RUN 12

1178

129685

6.7

(Q05920) Pyruvate carboxylase, mitochondrial precursor (EC 6.4.1.1) (Pyruvic carboxylase) (PCB)

	TK090902_P14_mitoch_2D_step11.3695.3695.2	3.0675	0.6604	2412.41	1	5000.0%	1	R.HIEVQILGDQYGNILHLYER.D
	TK090902_P14_mitoch_2D_step10.2381.2381.1	0.9538	0.0783	1047.0	123	5000.0%	1	R.RLEYKPIK.K
	TK090902_P14_mitoch_2D_step09.2259.2259.1	2.1246	0.2912	927.8	2	6670.0%	2	K.EMHFHPK.A
*	TK090902_P14_mitoch_2D_step04.2149.2149.1	0.8944	0.1421	1551.62	7	3080.0%	1	K.METVVTSPMEGTIR.K
*	TK090902_P14_mitoch_2D_step15.4063.4063.3	1.8026	0.043	3295.11	61	1250.0%	1	K.DLIDRHGEEVTPEDVLSAAMYPDVFAQFK.D
*	TK090902_P14_mitoch_2D_step15.4706.4706.3	2.0284	0.3361	4409.75	1	1550.0%	6	K.LLHYLGHVMVNGPTTPIPVNVSPSPVDPAVPVVPIGPPPAGFR.D
	TK090902_P14_mitoch_2D_step03.2070.2070.1	1.1105	0.19	1113.32	2	3890.0%	1	R.DAHQSLLATR.V

Q9EQ20

99.6%

23.6%

535

57916

8.1

(Q9EQ20) Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)

*	TK090902_P14_mitoch_2D_step03.3969.3969.2	0.8302	0.0479	3115.7	2	1610.0%	1	K.YAHMVDVGQVGVNVPIPVPLPMFSFTGSR.S
*	TK090902_P14_mitoch_2D_step03.3026.3026.1	1.6378	0.3127	1464.81	1	4620.0%	2	R.CMALSTAILVGEAK.K
*	TK090902_P14_mitoch_2D_step04.3130.3130.1	1.3042	0.0018	1156.15	120	3750.0%	1	K.KWLPELVDR.A
*	TK090902_P14_mitoch_2D_step12.4083.4083.2	1.824	0.2848	2346.34	1	3500.0%	1	K.EEIFGPVLVVLETETLDEAIK.I
*	TK090902_P14_mitoch_2D_step03.3087.3087.2	1.3656	0.2568	1890.04	1	3750.0%	1	K.AISFVGSNQAGEYIFER.G
*	TK090902_P14_mitoch_2D_step13.3136.3136.2	1.3415	0.2315	2689.66	8	1880.0%	1	R.GLQVVEHACSVTSLMLGETMPSITK.D
	TK090902_P14_mitoch_2D_step05.2048.2048.1	2.7851	0.4791	1184.06	1	5500.0%	4	K.NHGVVMPDANK.E

Q9D7G7

99.6%

20.8%

327

35217

8.1

(Q9D7G7) 0710008K08Rik protein

	TK090902_P14_mitoch_2D_step09.2937.2937.1	2.2926	0.4087	1189.4	1	5910.0%	7	R.LHALVVGPGLGR.D
	TK090902_P14_mitoch_2D_step02.3743.3743.2	1.0984	0.1502	2901.07	70	1400.0%	2	R.DIPVVIDADGLWLVAQQPALIHSYHK.A
	TK090902_P14_mitoch_2D_step04.1706.1706.1	1.1177	9.0E-4	798.77	65	5000.0%	1	K.HKGQDGR.I
	TK090902_P14_mitoch_2D_step14.2873.2873.2	1.0412	0.0285	2536.14	35	1820.0%	1	K.TNGSSPLLVAAWGACTLTRECNR.Q

PUR9_MOUSE

99.6%

7.4%

592

64157

6.8

(Q9CWJ9) Bifunctional purine biosynthesis protein PURH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) (AICAR transformylase); IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP synthetase) (ATIC)]

*	TK090902_P14_mitoch_2D_step15.2609.2609.3	1.9335	0.1643	2991.06	45	1670.0%	1	R.GAVDIPAAASFKHVSPAGAAVGVPLSEDEAR.V
	TK090902_P14_mitoch_2D_step13.2384.2384.1	2.4803	0.4321	1357.12	1	5000.0%	1	K.TLHPAVHAGILAR.N

RL30_HUMAN

99.6%

114

12653

9.6

(P04645) 60S ribosomal protein L30 (P04645) 60S ribosomal protein L30

	TK090902_P14_mitoch_2D_step08.2367.2367.2	3.1737	0.454	2017.1	1	4440.0%	3	K.TGVHHYSGNNIELGTACGK.Y

Q99K86

99.6%

650

70858

6.5

(Q99K86) Lutheran blood group (Auberger b antigen included)

	TK090902_P14_mitoch_2D_step06.4120.4120.3	1.6207	0.0611	4402.45	3	1340.0%	1	K.GHVFHFGSVAPQTAQAGVAVMAVAVSVGLLLLVVAAFYCMRR.K
	TK090902_P14_mitoch_2D_step08.2398.2398.2	3.8315	0.5331	2155.26	1	5830.0%	3	R.DANFHCAAHYDLPSGQHGR.L
	TK090902_P14_mitoch_2D_step09.3963.3963.2	1.3376	0.3273	2258.24	1	3060.0%	4	R.EHPEHYVLEWFLVDGTGAR.H
	TK090902_P14_mitoch_2D_step14.2734.2734.3	1.3854	0.0129	3705.93	2	1480.0%	1	K.LHVAYLDPLELSVPEELFVFLNSSSTVVNCSAR.G
	TK090902_P14_mitoch_2D_step03.3711.3711.2	0.6747	0.0272	2928.82	111	830.0%	1	R.LTLHYPTEHVEFWVGSPSTTEGWVR.E
	TK090902_P14_mitoch_2D_step13.3229.3229.2	0.9071	0.0909	2690.95	72	1360.0%	2	R.NQSGIYGCRVEDYDADEEVQLVK.K

PSPA_MOUSE

99.6%

973

17.7%

248

26157

5.4

(P35242) Pulmonary surfactant-associated protein A precursor (SP-A) (PSP-A) (PSAP)

*	TK090902_P14_mitoch_2D_step08.4062.4062.2	0.9605	0.2133	2346.68	3	2140.0%	28	K.HQILQTMGVLSLQGSMLSVGDK.V
*	TK090902_P14_mitoch_2D_step05.1776.1776.1	1.2288	0.1052	852.09	26	3750.0%	13	R.AGGHIAAPR.N
*	TK090902_P14_mitoch_2D_step01.0034.0034.1	1.6536	0.3551	1417.92	1	5420.0%	2	R.NPEENEAIASITK.K

MDHM_MOUSE

99.6%

221

40.5%

338

35596

8.6

(P08249) Malate dehydrogenase, mitochondrial precursor (EC 1.1.1.37)

	TK090902_P14_mitoch_2D_step01.2005.2005.1	2.7962	0.4306	1373.01	1	5910.0%	2	K.TIIPLISQCTPK.V
*	TK090902_P14_mitoch_2D_step01.3274.3274.3	3.6049	0.5757	2396.83	1	3210.0%	1	R.LTLYDIAHTPGVAADLSHIETR.A
	TK090902_P14_mitoch_2D_step06.2460.2460.1	1.4808	0.2861	1150.73	1	5450.0%	11	R.VNVPVIGGHAGK.T
*	TK090902_P14_mitoch_2D_step01.2038.2038.1	1.974	0.2841	1116.96	1	5560.0%	2	K.MIAEAIPELK.A
	TK090902_P14_mitoch_2D_step01.0785.0785.1	1.147	0.0155	993.02	12	5000.0%	1	R.ANTFVAELK.G
	TK090902_P14_mitoch_2D_step02.4547.4547.1	1.9201	0.3842	1235.29	3	5500.0%	1	K.IFGVTTLDIVR.A
	TK090902_P14_mitoch_2D_step07.1667.1667.1	1.5946	0.1956	930.69	5	6430.0%	5	K.HGVYNPNK.I
	TK090902_P14_mitoch_2D_step01.1838.1838.1	1.6851	0.1956	1341.84	1	4580.0%	5	K.GCDVVVIPAGVPR.K
	TK090902_P14_mitoch_2D_step06.3800.3800.3	1.1537	0.028	2547.33	65	1500.0%	1	K.VAVLGASGGIGQPLSLLLKNSPLVSR.L
	TK090902_P14_mitoch_2D_step13.1230.1230.1	2.0063	0.268	1056.94	3	5620.0%	1	K.KHGVYNPNK.I
	TK090902_P14_mitoch_2D_step01.2257.2257.1	2.3702	0.3521	1493.51	1	5420.0%	6	K.GYLGPEQLPDCLK.G

Q9Z2L6

99.6%

481

54537

7.5

(Q9Z2L6) Multiple inositol polyphosphate phosphatase

*	TK090902_P14_mitoch_2D_step11.3135.3135.2	2.3149	0.5498	2052.03	1	4410.0%	2	K.VLPLAHSQRPVGLYEELK.T

Q99KE1

99.6%

589

65799

7.6

(Q99KE1) Hypothetical 65.8 kDa protein

*	TK090902_P14_mitoch_2D_step11.3813.3813.3	0.8519	0.0651	4533.48	47	710.0%	1	R.VINKPVSEHKILFLGAGEAALGIANLIVLSMVESGLSEEEAQR.K
*	TK090902_P14_mitoch_2D_step15.3350.3350.2	4.7257	0.627	2177.14	1	5240.0%	3	K.LKPSVIIGVAGAGPLFTHGVIK.A

FBN1_MOUSE

99.6%

2871

312266

4.9

(Q61554) Fibrillin 1 precursor

	TK090902_P14_mitoch_2D_step07.1915.1915.2	2.4143	0.5822	1878.55	1	6070.0%	4	K.YQCACNPGYHPTHDR.L
	TK090902_P14_mitoch_2D_step11.2410.2410.2	3.7489	0.5323	2095.03	1	5310.0%	4	R.AWGHPCEMCPAQPHPCR.R
	TK090902_P14_mitoch_2D_step06.1965.1965.1	0.7921	0.0263	1166.84	178	2220.0%	1	K.DITNGKPFFK.D
	TK090902_P14_mitoch_2D_step10.3144.3144.3	1.304	0.0726	4366.39	48	990.0%	1	R.GFIPNIRTGACQDVDECQAIPGMCQGGNCINTVGSFECK.C

CALU_MOUSE

99.6%

25.7%

315

37064

4.7

(O35887) Calumenin precursor

	TK090902_P14_mitoch_2D_step05.3760.3760.2	1.0455	0.1466	2704.59	1	1740.0%	2	K.EEIVDKYDLFVGSQATDFGEALVR.H
*	TK090902_P14_mitoch_2D_step08.2424.2424.1	1.9893	0.4025	1242.28	1	5620.0%	4	K.RWIHEDVER.Q
	TK090902_P14_mitoch_2D_step09.2057.2057.1	2.0953	0.267	1462.75	1	4550.0%	2	K.DRVHHEPQLSDK.V
	TK090902_P14_mitoch_2D_step08.4144.4144.3	0.9401	0.129	4154.86	7	1000.0%	1	K.GHDLNEDGLVSWEEYKNATYGYVLDDPDPDDGFNYK.Q
	TK090902_P14_mitoch_2D_step08.2012.2012.2	1.3208	0.3136	1192.7	1	5000.0%	3	R.VHHEPQLSDK.V

Q9CXS9

99.6%

489

55789

6.4

(Q9CXS9) 3110009G03Rik protein

*	TK090902_P14_mitoch_2D_step15.3618.3618.2	2.4319	0.2977	3038.85	1	2690.0%	1	R.LAHQSWALLHEESPLNNFLLSHGPGIR.L
*	TK090902_P14_mitoch_2D_step15.2707.2707.2	1.0793	0.0132	1556.53	9	4090.0%	1	K.NDDEYMKYLAYK.Q
	TK090902_P14_mitoch_2D_step11.1615.1615.1	0.2064	0.016	711.33	12	1250.0%	1	R.DRYVR.E
*	TK090902_P14_mitoch_2D_step07.2309.2309.2	2.4996	0.4612	1571.55	1	5710.0%	2	K.AHASSHGDIPVPEPR.I

Q922L5

99.6%

910

102088

7.4

(Q922L5) Unknown (Protein for MGC:5677)

	TK090902_P14_mitoch_2D_step13.2345.2345.1	1.0579	0.2017	1276.88	15	4000.0%	1	K.TIHLSSIRPPR.L
	TK090902_P14_mitoch_2D_step15.2393.2393.2	3.273	0.5454	2264.64	1	5560.0%	1	R.HFVDSHHQKPVNAIIEHVR.D
*	TK090902_P14_mitoch_2D_step04.3014.3014.1	0.8707	0.0060	1015.63	83	2780.0%	1	R.RAAATQPDGK.D
*	TK090902_P14_mitoch_2D_step06.1880.1880.2	1.0289	0.0866	1679.44	28	2000.0%	1	R.ETDGSETPEPFAAEAK.F

Q9DA61

99.6%

357

40729

8.8

(Q9DA61) 2300004O14Rik protein

*	TK090902_P14_mitoch_2D_step09.1881.1881.2	1.4916	0.0489	1272.94	34	4500.0%	1	R.AAPIHEQTLYK.E
*	TK090902_P14_mitoch_2D_step01.1337.1337.1	1.2717	0.1321	964.94	50	3890.0%	4	R.LGLGGYGTPK.R
*	TK090902_P14_mitoch_2D_step08.3067.3067.2	2.66	0.6289	2633.75	1	3750.0%	3	R.AAPIHEQTLYKEEPCYIFHQR.C

ICA1_MOUSE

99.6%

537

58844

6.1

(P13597) Intercellular adhesion molecule-1 precursor (MALA-2)

*	TK090902_P14_mitoch_2D_step04.3126.3126.1	2.436	0.4793	1282.96	1	4580.0%	2	R.KADGALLPIGVVK.S
*	TK090902_P14_mitoch_2D_step01.2346.2346.1	1.5392	0.4113	1557.88	1	5000.0%	1	K.LDTPDLLEVGTQQK.L
*	TK090902_P14_mitoch_2D_step01.2404.2404.1	0.8842	0.2857	1152.7	119	2270.0%	1	K.ADGALLPIGVVK.S
*	TK090902_P14_mitoch_2D_step01.2001.2001.1	0.9589	0.0852	1105.14	63	2780.0%	2	R.TFDLPATIPK.L

Q9UFU8

99.6%

917

99439

6.9

(Q9UFU8) Hypothetical protein (Fragment)

*	TK090902_P14_mitoch_2D_step13.1981.1981.1	2.252	0.2642	1537.89	1	4330.0%	2	K.MHGGGPSVTAGVPLKK.E
*	TK090902_P14_mitoch_2D_step09.2365.2365.1	1.8592	0.1735	1393.0	4	4090.0%	1	K.THLSLSHQPDKK.G
*	TK090902_P14_mitoch_2D_step05.4860.4860.2	0.9943	0.2417	3138.72	20	1250.0%	1	R.IHFGGLIEEDDVILLAAALRIQNMVSSGR.R
*	TK090902_P14_mitoch_2D_step07.2193.2193.1	1.4466	0.3379	1263.97	1	5500.0%	2	K.THLSLSHQPDK.K

GR75_MOUSE

99.6%

417

15.6%

679

73528

6.2

(P38647) Stress-70 protein, mitochondrial precursor (75 kDa glucose regulated protein) (GRP 75) (Peptide-binding protein 74) (PBP74) (P66 MOT) (Mortalin)

	TK090902_P14_mitoch_2D_step07.4447.4447.2	2.2536	0.5546	2313.49	1	3330.0%	20	R.GVPQIEVTFDIDANGIVHVSAK.D
	TK090902_P14_mitoch_2D_step09.4020.4020.2	1.4906	0.2628	2121.44	70	1940.0%	1	K.NAVITVPAYFNDSQRQATK.D
	TK090902_P14_mitoch_2D_step01.1962.1962.1	1.0203	0.1538	1243.04	12	3180.0%	1	K.DAGQISGLNVLR.V
	TK090902_P14_mitoch_2D_step02.4448.4448.1	0.4802	0.0307	1494.8	22	1250.0%	1	K.VCQGEREMAGDNK.L
	TK090902_P14_mitoch_2D_step04.4927.4927.1	0.7581	0.0426	1451.03	74	1920.0%	1	R.TTPSVVAFTADGER.L
	TK090902_P14_mitoch_2D_step13.1610.1610.1	1.0369	0.025	1125.89	15	4090.0%	2	R.EGSGSSGTGEQK.E
	TK090902_P14_mitoch_2D_step04.2367.2367.1	1.3504	0.1761	1593.82	1	3850.0%	3	K.MKETAENYLGHTAK.N

Q9EQ06

99.6%

19.5%

298

32881

8.7

(Q9EQ06) Alcohol dehydrogenase Pan1b

*	TK090902_P14_mitoch_2D_step12.2221.2221.2	2.4974	0.5415	1814.78	1	5330.0%	1	R.KLGAQAHPFVVDCSQR.E
*	TK090902_P14_mitoch_2D_step10.4149.4149.3	1.3277	0.0367	4739.11	49	850.0%	1	R.TSCLCPNFINTGFIKNPSTNLGPTLEPEEVVEHLMHGILTEK.Q

Q99LX7

99.6%

18.4%

288

31257

8.5

(Q99LX7) Hypothetical 31.3 kDa protein (Fragment)

*	TK090902_P14_mitoch_2D_step08.4043.4043.2	2.4907	0.5005	3176.07	1	3280.0%	2	K.KPVIAAVNGYALGGGCELAMMCDIIYAGEK.A
*	TK090902_P14_mitoch_2D_step10.2865.2865.1	1.631	0.3377	1314.41	1	5000.0%	7	K.FLSHWDHITR.V
*	TK090902_P14_mitoch_2D_step04.2731.2731.2	1.8378	0.3414	1428.62	1	4580.0%	4	K.NSSVGLIQLNRPK.A

Q9CYS0

99.6%

19.3%

161

17731

5.1

(Q9CYS0) 2400001E08Rik protein

	TK090902_P14_mitoch_2D_step14.3338.3338.3	3.4834	0.4171	3413.29	1	3000.0%	1	K.KLPPLPSLTSQPHQVLASEPIPFSDLQQVSR.I

CPT2_MOUSE

99.6%

658

73927

8.2

(P52825) Carnitine O-palmitoyltransferase II, mitochondrial precursor (EC 2.3.1.21) (CPT II)

	TK090902_P14_mitoch_2D_step11.2997.2997.3	1.5613	0.0452	3458.98	33	1430.0%	1	R.LIRFVPSSLSWYGAYLVNAYPLDMSQYFR.L
*	TK090902_P14_mitoch_2D_step09.3077.3077.2	3.7356	0.5202	1906.04	1	5310.0%	4	K.DLVHLSHTMLHGDGTNR.W
*	TK090902_P14_mitoch_2D_step05.2515.2515.1	2.6941	0.3027	1277.09	1	6000.0%	6	K.ELHAHLLAQDK.Q
*	TK090902_P14_mitoch_2D_step14.3658.3658.2	1.2233	0.2444	3088.19	1	2120.0%	1	R.KGHFYVFDVLDQDGNIVNPSEIQAHLK.Y
	TK090902_P14_mitoch_2D_step03.1664.1664.1	0.2358	0.014	557.92	9	1670.0%	1	K.RLIR.F

THTR_MOUSE

99.6%

296

33335

7.9

(P52196) Thiosulfate sulfurtransferase (EC 2.8.1.1) (Rhodanese)

	TK090902_P14_mitoch_2D_step03.2512.2512.1	0.928	0.1136	1021.02	1	3570.0%	1	K.RFQLVDSR.A
*	TK090902_P14_mitoch_2D_step11.3618.3618.2	0.8933	0.0251	2404.62	66	1750.0%	1	K.ATLNLSLLKTYEQVLENLQSK.R
	TK090902_P14_mitoch_2D_step04.2746.2746.2	3.1344	0.6016	1503.47	1	7500.0%	1	K.KVDLSQPLIATCR.K

CAO1_MOUSE

99.6%

661

74660

8.6

(Q9R0H0) Acyl-coenzyme A oxidase 1, peroxisomal (EC 1.3.3.6) (Palmitoyl-CoA oxidase) (AOX)

	TK090902_P14_mitoch_2D_step09.3023.3023.2	3.1621	0.5922	1932.4	1	4720.0%	6	R.EIGTHKPLPGITVGDIGPK.F

RHOA_MOUSE

99.6%

39.9%

193

21782

6.1

(Q9QUI0) Transforming protein RhoA

	TK090902_P14_mitoch_2D_step05.2379.2379.1	2.2885	0.4265	1217.91	1	6360.0%	3	K.KLVIVGDGACGK.T
	TK090902_P14_mitoch_2D_step05.3435.3435.1	1.5108	0.275	1081.9	2	6250.0%	1	K.TCLLIVFSK.D
	TK090902_P14_mitoch_2D_step09.3325.3325.3	1.67	0.2165	4765.52	16	1120.0%	1	K.DQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR.L
	TK090902_P14_mitoch_2D_step13.3085.3085.2	2.8637	0.4545	1737.99	1	6790.0%	1	K.HFCPNVPIILVGNKK.D
	TK090902_P14_mitoch_2D_step05.3277.3277.2	1.9779	0.4498	1611.02	1	5380.0%	6	K.HFCPNVPIILVGNK.K

Q8R3F5

99.6%

17.2%

221

24875

8.8

(Q8R3F5) Hypothetical 24.9 kDa protein (Fragment)

*	TK090902_P14_mitoch_2D_step12.1837.1837.2	1.1153	0.29	1466.71	3	3080.0%	2	K.KPLVAVHSNVSGQK.Y
*	TK090902_P14_mitoch_2D_step06.3436.3436.2	2.0035	0.0926	2661.31	1	2830.0%	1	R.TKMLPVSGGFHTCLMEPAVDPLMK.V

Q9QYB1

99.6%

253

28729

5.6

(Q9QYB1) Intracellular chloride channel protein

	TK090902_P14_mitoch_2D_step10.3309.3309.2	2.6146	0.5457	2625.6	1	3040.0%	7	R.KPADLQNLAPGTHPPFITFNSEVK.T
	TK090902_P14_mitoch_2D_step15.2922.2922.2	1.6692	0.2743	2779.44	3	2080.0%	1	K.RKPADLQNLAPGTHPPFITFNSEVK.T

Q921H8

99.6%

424

43953

8.4

(Q921H8) Unknown (Protein for MGC:7090)

*	TK090902_P14_mitoch_2D_step01.2299.2299.1	2.4743	0.4518	1502.89	1	5000.0%	2	R.AEIVPVTTTVLDDK.G

AKP1_MOUSE

99.6%

857

92165

5.0

(O08715) A kinase anchor protein 1, mitochondrial precursor (Protein kinase A anchoring protein 1) (PRKA1) (Dual specificity A-Kinase anchoring protein 1) (D-AKAP-1) (Spermatid A-kinase anchor protein) (S-AKAP)

*	TK090902_P14_mitoch_2D_step14.2182.2182.3	1.5944	0.1479	3120.53	5	1700.0%	1	K.NSAHHISLAPCPPPVTPQRQSLEGASNPR.G
*	TK090902_P14_mitoch_2D_step15.2145.2145.2	2.3867	0.5286	2080.78	1	3330.0%	2	K.NSAHHISLAPCPPPVTPQR.Q

ODPA_MOUSE

99.6%

22.1%

390

43232

8.2

(P35486) Pyruvate dehydrogenase E1 component alpha subunit, somatic form, mitochondrial precursor (EC 1.2.4.1) (PDHE1-A type I)

	TK090902_P14_mitoch_2D_step08.2239.2239.1	1.4641	0.0348	1596.67	46	2310.0%	5	R.YHGHSMSDPGVSYR.T
	TK090902_P14_mitoch_2D_step15.3199.3199.3	1.3377	0.1783	3963.36	9	1320.0%	1	R.KEIEDAAQFATADPEPPLEELGYHIYSSDPPFEVR.G
	TK090902_P14_mitoch_2D_step01.1902.1902.1	0.8935	0.1683	917.31	24	4290.0%	1	K.SDPIMLLK.D
*	TK090902_P14_mitoch_2D_step01.2011.2011.1	1.326	0.2148	944.04	1	5620.0%	1	R.AILAELTGR.R
	TK090902_P14_mitoch_2D_step10.3936.3936.1	0.5532	0.1888	1321.73	7	2000.0%	1	K.GPILMELQTYR.Y
	TK090902_P14_mitoch_2D_step06.2869.2869.1	1.2195	0.0536	1032.64	1	5620.0%	3	K.RGDFIPGLR.V

H32_BOVIN

99.6%

23.7%

135

15257

11.3

(P16105) Histone H3 (H3.2)

*	TK090902_P14_mitoch_2D_step13.4264.4264.3	2.7275	0.5536	3518.24	1	1940.0%	9	R.FQSSAVMALQEASEAYLVGLFEDTNLCAIHAK.R

PCD8_MOUSE

99.6%

612

66766

9.2

(Q9Z0X1) Programmed cell death protein 8, mitochondrial precursor (EC 1.-.-.-) (Apoptosis-inducing factor)

*	TK090902_P14_mitoch_2D_step10.1696.1696.3	0.7155	0.0055	1317.51	90	1140.0%	1	-.MFRCGGLAGAFK.Q
	TK090902_P14_mitoch_2D_step10.1987.1987.1	1.8135	0.3412	1344.75	1	5000.0%	4	R.VEHHDHAVVSGR.L
	TK090902_P14_mitoch_2D_step13.1250.1250.1	1.9655	0.2896	1500.98	1	4170.0%	2	R.RVEHHDHAVVSGR.L
*	TK090902_P14_mitoch_2D_step05.3091.3091.2	2.4745	0.4117	2264.54	1	3250.0%	2	R.KVETDHIVTAVGLEPNVELAK.T

ATPG_MOUSE

99.6%

298

32886

9.0

(Q91VR2) ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14)

*	TK090902_P14_mitoch_2D_step04.2270.2270.1	2.5321	0.3614	1202.04	1	5000.0%	7	R.GLCGAIHSSVAK.Q
*	TK090902_P14_mitoch_2D_step04.3074.3074.1	2.1522	0.4312	1310.81	1	6000.0%	3	R.THSDQFLVSFK.D

TRFL_MOUSE

99.6%

707

77866

8.6

(P08071) Lactotransferrin precursor (Lactoferrin)

*	TK090902_P14_mitoch_2D_step13.2084.2084.2	3.4666	0.5125	1662.27	1	6430.0%	4	K.NCHLAIAPNHAVVSR.T
*	TK090902_P14_mitoch_2D_step13.4562.4562.3	1.1377	0.1414	3253.24	65	780.0%	1	R.SAGWKIPIGTLRPYLNWNGPPASLEEAVSK.F
*	TK090902_P14_mitoch_2D_step08.3420.3420.1	1.0381	0.0688	1576.8	43	2690.0%	1	R.GSTVFEELPNKAER.D

Q9D2F6

99.6%

22.2%

185

20160

6.0

(Q9D2F6) 4930552N12Rik protein

*	TK090902_P14_mitoch_2D_step11.2737.2737.2	4.2444	0.589	2160.61	1	5560.0%	3	K.SGVTDHYALDDHHALHLTR.K
*	TK090902_P14_mitoch_2D_step05.3597.3597.2	0.7646	0.1291	2313.11	21	1430.0%	1	R.IFGYPVGIIGNNGVLFSESAKK.G

Q9DBL1

99.6%

432

47874

7.9

(Q9DBL1) 1300003O09Rik protein

*	TK090902_P14_mitoch_2D_step04.2645.2645.1	1.1299	0.066	1130.09	100	3890.0%	1	R.LVEAGRPFIK.E
	TK090902_P14_mitoch_2D_step14.3341.3341.2	1.2745	0.0296	2637.25	16	1960.0%	1	K.IGTIYEGASNIQLNTIAKHIDAEY.-
*	TK090902_P14_mitoch_2D_step12.3973.3973.2	1.2173	0.1576	2659.1	1	2500.0%	3	K.RIFDFQGLQHQVAQVATQLEATR.L
*	TK090902_P14_mitoch_2D_step04.2897.2897.2	2.1443	0.4936	2120.05	1	5000.0%	3	K.KFAQEHVAPLVSSMDENSK.M

GLYM_HUMAN

99.6%

504

55993

8.5

(P34897) Serine hydroxymethyltransferase, mitochondrial precursor (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT)

*	TK090902_P14_mitoch_2D_step10.3549.3549.3	2.962	0.4053	2580.72	1	2500.0%	5	R.EVCDEVKAHLLADMAHISGLVAAK.V

KAD3_MOUSE

99.6%

219

24640

8.5

(Q9WTP7) GTP:AMP phosphotransferase mitochondrial (EC 2.7.4.10) (AK3) (Fragment)

	TK090902_P14_mitoch_2D_step04.2675.2675.1	2.484	0.4329	1510.68	1	5380.0%	1	K.KGVLETFSGTETNK.I
	TK090902_P14_mitoch_2D_step03.2395.2395.1	1.0552	0.1105	823.96	22	4170.0%	1	R.LALHELK.T

CYTB_MOUSE

99.6%

21.4%

11046

7.4

(Q62426) Cystatin B (Stefin B)

*	TK090902_P14_mitoch_2D_step10.2928.2928.2	3.3282	0.5228	2444.28	1	4250.0%	4	R.VFQPLPHENKPLTLSSYQTNK.E

CP4B_MOUSE

99.6%

511

58900

8.4

(Q64462) Cytochrome P450 4B1 (EC 1.14.14.1) (CYPIVB1)

*	TK090902_P14_mitoch_2D_step08.2194.2194.2	3.8237	0.4951	1675.11	1	6920.0%	2	R.ACQIAHDHTDHVIR.Q

Q9DBD3

99.6%

246

26237

7.8

(Q9DBD3) 1300017C12Rik protein

	TK090902_P14_mitoch_2D_step04.2654.2654.2	3.3858	0.5024	2294.75	1	5250.0%	2	R.ELGLVNHAVAQNEEGNAAYHR.A
	TK090902_P14_mitoch_2D_step08.3331.3331.2	0.7773	0.0432	2075.69	7	2110.0%	1	R.ALALAQEILPQAPIAVRLGK.V

YB1_MOUSE

99.6%

322

35730

9.9

(P27817) Nuclease sensitive element binding protein 1 (Y box binding protein-1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB)

	TK090902_P14_mitoch_2D_step05.2344.2344.3	3.7417	0.4065	3226.89	1	2410.0%	3	R.RPQYSNPPVQGEVMEGADNQGAGEQGRPVR.Q

GCDH_MOUSE

99.6%

15.3%

438

48647

8.6

(Q60759) Glutaryl-CoA dehydrogenase, mitochondrial precursor (EC 1.3.99.7) (GCD)

	TK090902_P14_mitoch_2D_step09.1458.1458.1	0.6996	0.0095	523.08	5	5000.0%	2	K.FSLR.A
*	TK090902_P14_mitoch_2D_step05.2001.2001.1	1.6169	0.3756	1533.73	4	3080.0%	1	R.HNPSNQSYTLSGTK.T
	TK090902_P14_mitoch_2D_step08.3500.3500.2	1.1714	0.0944	2677.53	1	2610.0%	3	R.HAMNLEAVNTYEGTHDIHALILGR.A
*	TK090902_P14_mitoch_2D_step05.2888.2888.3	1.9113	0.1419	2869.52	10	2080.0%	1	R.YGITWGVLGAAEFCLHTARQYALDR.I

Q99L23

99.6%

470

53332

6.9

(Q99L23) Similar to NADH dehydrogenase (Ubiquinone) Fe-S protein 2 (49kD) (NADH-coenzyme Q reductase) (Fragment)

	TK090902_P14_mitoch_2D_step07.3601.3601.3	1.2298	0.0333	3627.95	6	1170.0%	1	R.VSGARMHAAYIRPGGVHQDLPLGLLDDIYEFSK.N
	TK090902_P14_mitoch_2D_step06.3162.3162.1	2.2721	0.4703	1332.06	1	6000.0%	6	K.TSMESLIHHFK.L
	TK090902_P14_mitoch_2D_step06.2306.2306.1	0.6247	0.0044	1337.87	62	1540.0%	1	R.GVGAPVLRPGSGIR.L
	TK090902_P14_mitoch_2D_step14.3942.3942.3	3.4949	0.5125	3159.85	1	2590.0%	1	R.MHAAYIRPGGVHQDLPLGLLDDIYEFSK.N
	TK090902_P14_mitoch_2D_step14.2752.2752.2	3.4437	0.5359	2234.28	1	3750.0%	2	K.AVTNMTLNFGPQHPAAHGVLR.L
	TK090902_P14_mitoch_2D_step06.3465.3465.2	1.6923	0.3086	2049.65	1	3750.0%	2	K.ETAHWKPPPWNDVDILK.E

Q9DBD7

99.6%

14.4%

424

46226

8.1

(Q9DBD7) 1300016K07Rik protein

	TK090902_P14_mitoch_2D_step05.2104.2104.1	2.0613	0.1584	1247.87	1	6000.0%	7	K.KGDHYVLNGNK.F
	TK090902_P14_mitoch_2D_step13.4476.4476.2	1.0946	0.1551	2686.43	2	2080.0%	2	R.LVLAGGPLGIMQAVLDHTIPYLHVR.E
	TK090902_P14_mitoch_2D_step05.4911.4911.2	1.0595	0.1966	2781.37	17	1250.0%	1	R.GSNTCELVFEDCKVPAANVLSQESK.G

Q9D6E7

99.6%

15.5%

336

37157

5.1

(Q9D6E7) 2900073G06Rik protein

	TK090902_P14_mitoch_2D_step03.4050.4050.2	0.822	0.0229	2696.49	31	1040.0%	1	K.DTAVEGEEIEVNCTAMASKPATTIR.W
	TK090902_P14_mitoch_2D_step07.2833.2833.3	2.9489	0.4337	3029.94	1	2120.0%	1	K.VHKEDDGVPVICQVEHPAVTGNLQTQR.Y

ACDS_MOUSE

99.6%

412

44947

8.8

(Q07417) Acyl-CoA dehydrogenase, short-chain specific, mitochondrial precursor (EC 1.3.99.2) (SCAD) (Butyryl-CoA dehydrogenase)

	TK090902_P14_mitoch_2D_step01.4491.4491.1	0.6818	0.0384	442.7	1	8330.0%	1	R.GPLR.R
*	TK090902_P14_mitoch_2D_step06.3096.3096.2	4.1453	0.593	2184.69	1	5290.0%	6	R.LHTVYQSVELPETHQMLR.Q
*	TK090902_P14_mitoch_2D_step01.2417.2417.1	1.0038	0.2764	1227.42	1	3000.0%	1	K.ELVPIAAQLDR.E
*	TK090902_P14_mitoch_2D_step04.2630.2630.1	2.2596	0.4888	1171.04	1	7220.0%	2	R.EHLFPTAQVK.K

Q9Z2I0

99.6%

738

82989

6.5

(Q9Z2I0) Leucine zipper-EF-hand containing transmembrane protein 1

	TK090902_P14_mitoch_2D_step01.1914.1914.1	1.0135	0.0574	1302.37	14	3640.0%	1	K.STLQTLPEIVAK.E
	TK090902_P14_mitoch_2D_step06.1856.1856.3	1.1822	0.0263	1912.92	136	1830.0%	1	R.ETGERPSNEEIMRFSK.L
*	TK090902_P14_mitoch_2D_step09.4057.4057.2	1.1499	0.1194	2704.93	4	1740.0%	5	K.RVQQMIGQIDGLITQLETTQQDGK.L
	TK090902_P14_mitoch_2D_step12.4027.4027.2	1.1857	0.0054	2945.51	54	1350.0%	1	R.AMYLPDTLSPADQLKSTLQTLPEIVAK.E

ARSA_MOUSE

99.6%

506

53776

5.9

(P50428) Arylsulfatase A precursor (EC 3.1.6.8) (ASA) (Cerebroside-sulfatase)

	TK090902_P14_mitoch_2D_step15.3107.3107.2	1.8838	0.3541	2240.08	1	3950.0%	1	K.WHLGVGPEGAFLPPHQGFHR.F
	TK090902_P14_mitoch_2D_step09.2545.2545.2	2.5412	0.5357	2590.64	1	3700.0%	7	K.AHFFTQGSAHSDTTSDPACHAANR.L

ACTA_HUMAN

99.6%

200

32.6%

377

42009

5.4

(P03996) Actin, aortic smooth muscle (Alpha-actin 2) (P03996) Actin, aortic smooth muscle (Alpha-actin 2)

	TK090902_P14_mitoch_2D_step01.0076.0076.1	1.7165	0.1264	1163.96	1	5000.0%	8	K.EITALAPSTMK.I
	TK090902_P14_mitoch_2D_step01.0355.0355.1	0.9525	0.0452	644.85	3	6000.0%	1	R.GILTLK.Y
	TK090902_P14_mitoch_2D_step07.2293.2293.2	1.9345	0.2529	2351.09	1	3100.0%	1	R.HQGVMVGMGQKDSYVGDEAQSK.R
	TK090902_P14_mitoch_2D_step01.2599.2599.2	1.5277	0.0703	1962.95	4	3670.0%	1	K.YPIEHGIITNWDDMEK.I
	TK090902_P14_mitoch_2D_step10.2728.2728.1	0.8313	0.0896	801.92	69	5000.0%	1	K.RGILTLK.Y
	TK090902_P14_mitoch_2D_step01.2377.2377.1	1.6207	0.0977	1000.02	4	5710.0%	2	R.DLTDYLMK.I
	TK090902_P14_mitoch_2D_step06.3905.3905.3	1.4432	0.0048	3235.0	165	1210.0%	1	-.MCEEEDSTALVCDNGSGLCKAGFAGDDAPR.A
	TK090902_P14_mitoch_2D_step13.2613.2613.2	2.5847	0.3752	1504.29	1	7000.0%	1	K.IWHHSFYNELR.V
	TK090902_P14_mitoch_2D_step08.2256.2256.1	1.7404	0.403	1174.3	1	5000.0%	10	R.HQGVMVGMGQK.D
	TK090902_P14_mitoch_2D_step01.1833.1833.2	1.3645	0.1518	1959.33	1	4710.0%	3	R.VAPEEHPTLLTEAPLNPK.A

Q9D2G2

99.6%

120

454

48995

9.0

(Q9D2G2) 4930529O08Rik protein (RIKEN cDNA 4930529O08 gene)

	TK090902_P14_mitoch_2D_step02.3752.3752.1	0.8993	0.2314	1422.97	3	2500.0%	4	R.DYIDISVAVATPR.G
	TK090902_P14_mitoch_2D_step01.1687.1687.1	1.548	0.0901	853.47	4	5710.0%	2	R.GLVVPVIR.N
*	TK090902_P14_mitoch_2D_step08.1695.1695.2	1.6467	0.3689	1220.75	1	5000.0%	6	K.AKPAETPAPAHK.A

Q99L13

99.6%

335

35440

8.1

(Q99L13) Similar to 3-hydroxyisobutyrate dehydrogenase

*	TK090902_P14_mitoch_2D_step07.3535.3535.2	3.559	0.6631	1584.95	1	7690.0%	4	K.TPILLGSLAHQIYR.M
*	TK090902_P14_mitoch_2D_step03.4286.4286.3	1.0246	0.1219	4355.18	158	730.0%	1	R.SGNLTFMVGGVEDEFAAAQELLECMGSNVVYCGAVGTGQSAK.I

Q9CZU6

99.6%

123

464

51737

8.6

(Q9CZU6) 2610511A05Rik protein (Citrate synthase)

*	TK090902_P14_mitoch_2D_step06.3668.3668.2	1.3756	0.2504	2163.67	12	2810.0%	1	R.AKYWELIYEDCMDLIAK.L
*	TK090902_P14_mitoch_2D_step12.4047.4047.3	6.1377	0.6057	4171.33	1	2630.0%	11	R.AALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFAR.A
*	TK090902_P14_mitoch_2D_step15.3136.3136.2	1.073	0.0016	2082.08	77	2220.0%	1	R.ALGFPLERPKSMSTDGLMK.F

Q9DBY6

99.6%

407

44654

8.5

(Q9DBY6) 1200009K13Rik protein

	TK090902_P14_mitoch_2D_step07.2540.2540.2	3.2396	0.5771	2113.59	1	6470.0%	1	K.SKSEEAHAEDSVMDHHFR.K
	TK090902_P14_mitoch_2D_step07.2211.2211.1	1.2682	0.0274	1175.97	53	3750.0%	1	R.RFEKPLEEK.G

TPP1_MOUSE

99.6%

562

61342

6.6

(O89023) Tripeptidyl-peptidase I precursor (EC 3.4.14.9) (TPP-I) (Tripeptidyl aminopeptidase) (Lysosomal pepstatin insensitive protease) (LPIC)

*	TK090902_P14_mitoch_2D_step13.3226.3226.2	1.8623	0.1654	1566.48	7	3850.0%	1	R.ILNGRPPLGFLNPR.L
*	TK090902_P14_mitoch_2D_step08.3132.3132.2	3.4793	0.6133	2237.03	1	4500.0%	7	K.FRPSFPASSPYVTTVGGTSFK.N
*	TK090902_P14_mitoch_2D_step15.3110.3110.2	1.7527	0.4268	2538.01	1	2950.0%	1	R.SPHPYQLPQALAPHVDFVGGLHR.F
*	TK090902_P14_mitoch_2D_step01.1019.1019.1	1.0877	0.0038	1452.79	42	2310.0%	2	R.LFGGSFTHQASVAK.V

GBB1_HUMAN

99.6%

340

37377

6.0

(P04901) Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1 (Transducin beta chain 1) (P04901) Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1 (Transducin beta chain 1)

	TK090902_P14_mitoch_2D_step07.2329.2329.1	1.7696	0.4107	807.49	1	6670.0%	7	K.VHAIPLR.S
	TK090902_P14_mitoch_2D_step14.4065.4065.3	1.6328	0.0040	4156.29	15	1180.0%	1	R.EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR.L

CH60_MOUSE

99.6%

1171

31.4%

573

60956

6.2

(P19226) 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat shock protein 60) (HSP-60) (Mitochondrial matrix protein P1) (HSP-65)

*	TK090902_P14_mitoch_2D_step05.3333.3333.2	1.8429	0.3868	1907.4	1	3530.0%	2	K.ISSVQSIVPALEIANAHR.K
	TK090902_P14_mitoch_2D_step15.4351.4351.2	3.8202	0.6816	2369.04	1	5000.0%	23	R.KPLVIIAEDVDGEALSTLVLNR.L
	TK090902_P14_mitoch_2D_step07.4103.4103.1	1.6576	0.3093	1557.01	1	4290.0%	1	R.GVMLAVDAVIAELKK.Q
	TK090902_P14_mitoch_2D_step01.0008.0008.1	1.5329	0.1832	903.78	2	5620.0%	2	K.LSDGVAVLK.V
*	TK090902_P14_mitoch_2D_step08.3326.3326.2	4.544	0.6083	2037.16	1	6670.0%	18	K.KISSVQSIVPALEIANAHR.K
*	TK090902_P14_mitoch_2D_step11.3111.3111.2	1.2738	0.3489	2199.23	1	3240.0%	3	K.RIQEITEQLDITTSEYEK.E
*	TK090902_P14_mitoch_2D_step01.2980.2980.1	1.1935	0.1551	1178.52	1	4500.0%	1	K.DIGNIISDAMK.K
	TK090902_P14_mitoch_2D_step02.3995.3995.1	2.021	0.1	1432.37	8	3460.0%	8	R.GVMLAVDAVIAELK.K
*	TK090902_P14_mitoch_2D_step09.4211.4211.3	3.3384	0.3154	2844.73	1	2690.0%	11	R.TALLDAAGVASLLTTAEAVVTEIPKEEK.D
	TK090902_P14_mitoch_2D_step01.2317.2317.1	1.7326	0.3503	1347.07	1	5450.0%	2	R.TVIIEQSWGSPK.V
*	TK090902_P14_mitoch_2D_step04.4091.4091.2	1.49	0.2767	2534.93	1	2730.0%	1	K.ILQSSSEVGYDAMLGDFVNMVEK.G
	TK090902_P14_mitoch_2D_step04.2947.2947.2	3.3642	0.59	2516.62	1	3910.0%	3	K.KQSKPVTTPEEIAQVATISANGDK.D

ATPB_MOUSE

99.6%

136

3214

48.8%

529

56301

5.3

(P56480) ATP synthase beta chain, mitochondrial precursor (EC 3.6.3.14)

	TK090902_P14_mitoch_2D_step03.2926.2926.2	1.2076	0.1899	1654.61	2	3210.0%	9	R.LVLEVAQHLGESTVR.T
	TK090902_P14_mitoch_2D_step01.0240.0240.1	0.9806	0.0705	1041.14	4	3330.0%	3	K.IPVGPETLGR.I
	TK090902_P14_mitoch_2D_step02.3903.3903.1	1.7067	0.1355	1461.42	1	5420.0%	21	K.TVLIMELINNVAK.A
	TK090902_P14_mitoch_2D_step03.3625.3625.3	1.3785	0.2691	3718.65	1	1290.0%	3	K.GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSR.A
	TK090902_P14_mitoch_2D_step01.1835.1835.1	0.9557	0.1061	975.84	2	5500.0%	1	K.IGLFGGAGVGK.T
	TK090902_P14_mitoch_2D_step01.2392.2392.2	2.2684	0.3262	2268.15	1	3500.0%	1	R.IPSAVGYQPTLATDMGTMQER.I
	TK090902_P14_mitoch_2D_step02.2840.2840.1	1.3588	0.1735	1438.12	3	3080.0%	1	R.FTQAGSEVSALLGR.I
*	TK090902_P14_mitoch_2D_step09.2448.2448.3	1.2116	0.0014	1747.76	4	2790.0%	1	-.MLSLVGRVASASASGALR.G
	TK090902_P14_mitoch_2D_step01.1993.1993.1	1.7815	0.3589	1091.11	1	4440.0%	3	K.VVDLLAPYAK.G
	TK090902_P14_mitoch_2D_step06.3869.3869.2	2.5295	0.4472	2026.39	1	3820.0%	3	R.FLSQPFQVAEVFTGHMGK.L
	TK090902_P14_mitoch_2D_step11.4449.4449.2	1.1916	0.0945	3036.5	64	1070.0%	4	R.IVAVIGAVVDVQFDEGLPPILNALEVQGR.D
	TK090902_P14_mitoch_2D_step06.2802.2802.1	2.182	0.2631	1408.98	1	5770.0%	9	K.AHGGYSVFAGVGER.T
	TK090902_P14_mitoch_2D_step04.4293.4293.2	1.615	0.4338	2679.71	2	1960.0%	32	K.SLQDIIAILGMDELSEEDKLTVSR.A
	TK090902_P14_mitoch_2D_step06.5016.5016.3	2.5689	0.4193	3848.0	1	2010.0%	39	K.KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSR.A
	TK090902_P14_mitoch_2D_step01.0677.0677.1	1.1676	0.2979	1265.13	96	2730.0%	2	R.TIAMDGTEGLVR.G
	TK090902_P14_mitoch_2D_step01.1930.1930.1	1.5461	0.0387	1389.09	3	4090.0%	1	R.IMNVIGEPIDER.G

PDX5_MOUSE

99.6%

18.6%

210

21897

8.9

(P99029) Peroxiredoxin 5, mitochondrial precursor (Prx-V) (Peroxisomal antioxidant enzyme) (PLP) (Thioredoxin peroxidase PMP20) (Antioxidant enzyme B166) (AOEB166) (Liver tissue 2D-page spot 2D-0014IV)

*	TK090902_P14_mitoch_2D_step13.3758.3758.2	1.2712	0.1389	3046.54	32	1380.0%	1	K.GVLFGVPGAFTPGCSKTHLPGFVEQAGALK.A
	TK090902_P14_mitoch_2D_step07.3332.3332.1	1.7341	0.3084	1062.85	1	5620.0%	4	K.KVNLAELFK.G
	TK090902_P14_mitoch_2D_step06.2965.2965.1	2.753	0.4008	1470.13	1	4620.0%	7	K.THLPGFVEQAGALK.A

FLNA_HUMAN

99.6%

7.8%

2647

280759

6.1

(P21333) Filamin A (Alpha-filamin) (Filamin 1) (Endothelial actin-binding protein) (ABP-280) (Nonmuscle filamin)

*	TK090902_P14_mitoch_2D_step13.1368.1368.2	3.1222	0.633	1637.7	1	6000.0%	4	R.VHGPGIQSGTTNKPNK.F
*	TK090902_P14_mitoch_2D_step03.1848.1848.1	1.2922	0.0673	1109.8	80	3500.0%	5	R.ALTQTGGPHVK.A
*	TK090902_P14_mitoch_2D_step10.2272.2272.2	1.2315	0.0542	1553.25	20	3330.0%	1	R.DAGYGGLSLSIEGPSK.V
*	TK090902_P14_mitoch_2D_step09.2800.2800.2	1.6601	0.1889	2588.09	1	2730.0%	1	K.KTHIQDNHDGTYTVAYVPDVTGR.Y
*	TK090902_P14_mitoch_2D_step07.4476.4476.3	0.9987	0.2178	4571.42	52	640.0%	1	R.EAMQQADDWLGIPQVITPEEIVDPNVDEHSVMTYLSQFPK.A
*	TK090902_P14_mitoch_2D_step04.3689.3689.1	1.0506	0.0412	1200.78	13	3330.0%	1	K.ETADFKVYTK.G
*	TK090902_P14_mitoch_2D_step08.2624.2624.2	1.825	0.1529	1701.71	2	4000.0%	2	R.TGVELGKPTHFTVNAK.A
*	TK090902_P14_mitoch_2D_step04.2227.2227.1	1.7257	0.3083	1149.87	2	5000.0%	2	K.ETGEHLVHVK.K
*	TK090902_P14_mitoch_2D_step14.1734.1734.2	1.1225	0.1871	1077.8	1	5560.0%	1	K.LKPGAPLRPK.L
*	TK090902_P14_mitoch_2D_step05.4676.4676.3	1.2195	0.1282	4289.8	78	900.0%	1	K.AIVDGNLKLILGLIWTLILHYSISMPMWDEEEDEEAK.K
*	TK090902_P14_mitoch_2D_step03.3118.3118.2	0.8607	0.0935	1871.09	12	2190.0%	1	R.SPYTVTVGQACNPSACR.A

CLI5_HUMAN

99.6%

251

28110

5.8

(Q9NZA1) Chloride intracellular channel protein 5

*	TK090902_P14_mitoch_2D_step15.2954.2954.2	1.4323	0.1365	2745.66	20	1670.0%	1	K.RKPADLHNLAPGTHPPFLTFNGDVK.T
*	TK090902_P14_mitoch_2D_step14.3031.3031.3	3.8821	0.4274	2589.39	1	3700.0%	2	R.KPADLHNLAPGTHPPFLTFNGDVK.T

Q99NB1

99.6%

221

6.7%

682

74623

7.0

(Q99NB1) Acetyl-CoA synthetase 2

*	TK090902_P14_mitoch_2D_step12.2081.2081.1	1.3371	0.3313	1507.12	2	2500.0%	13	K.SCPTVQHVLVAHR.T
	TK090902_P14_mitoch_2D_step09.1895.1895.3	2.1367	0.1484	1581.18	2	3460.0%	1	R.LKINQFYGAPTAVR.L
*	TK090902_P14_mitoch_2D_step10.2404.2404.3	2.0829	0.3381	2259.64	1	2760.0%	5	K.IVDEAVKSCPTVQHVLVAHR.T
*	TK090902_P14_mitoch_2D_step05.4991.4991.1	0.8366	0.0424	1408.17	2	3640.0%	1	K.CKAVITFNQGLR.G

VINC_MOUSE

99.6%

1065

116674

5.9

(Q64727) Vinculin (Metavinculin)

	TK090902_P14_mitoch_2D_step13.2174.2174.1	1.4225	0.1467	1306.02	16	3640.0%	2	K.ETVREAEAASIK.I
	TK090902_P14_mitoch_2D_step12.2517.2517.3	2.4478	0.429	4030.14	1	1710.0%	3	R.LTDELAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQK.A
	TK090902_P14_mitoch_2D_step10.4331.4331.2	0.8168	0.0887	3048.57	36	1070.0%	1	K.IDAAQNWLADPNGGPEGEEQIRGALAEAR.K
	TK090902_P14_mitoch_2D_step14.2324.2324.3	3.2164	0.4054	3027.63	1	2500.0%	1	R.LTDELAPPKPPLPEGEVPPPRPPPPEEK.D

MY1C_MOUSE

99.6%

1028

118156

9.4

(Q9WTI7) Myosin Ic (Myosin I beta) (MMIb)

	TK090902_P14_mitoch_2D_step08.2740.2740.2	1.1473	0.0372	2734.09	19	1670.0%	1	R.IDYANLTGISVSSLSDSLFVLHVQR.E
*	TK090902_P14_mitoch_2D_step11.3785.3785.2	1.7442	0.1373	2471.75	14	2050.0%	1	K.GDVVLQSDHVIETLTKTALSADR.V
	TK090902_P14_mitoch_2D_step07.2208.2208.1	1.3447	0.2518	1034.71	3	4440.0%	2	K.NGHLAVVAPR.L
	TK090902_P14_mitoch_2D_step06.2308.2308.1	2.9993	0.3864	1266.13	1	6110.0%	7	R.HLGYKPEEYK.M
	TK090902_P14_mitoch_2D_step04.1614.1614.1	0.6008	0.0056	657.58	1	5000.0%	1	R.GTLGRR.K
	TK090902_P14_mitoch_2D_step10.2299.2299.2	2.7256	0.5196	1307.19	1	7500.0%	2	K.KRPETVATQFK.M

PDX1_MOUSE

99.6%

20.1%

199

22176

8.1

(P35700) Peroxiredoxin 1 (EC 1.11.1.-) (Thioredoxin peroxidase 2) (Thioredoxin-dependent peroxide reductase 2) (Osteoblast specific factor 3) (OSF-3) (Macrophage 23 kDa stress protein)

*	TK090902_P14_mitoch_2D_step05.3335.3335.2	1.7958	0.336	1767.83	1	4380.0%	2	K.KQGGLGPMNIPLISDPK.R
*	TK090902_P14_mitoch_2D_step13.3073.3073.2	1.6038	0.1201	1795.37	14	3120.0%	1	K.QGGLGPMNIPLISDPKR.T
*	TK090902_P14_mitoch_2D_step07.2499.2499.2	4.0295	0.5469	2394.37	1	4290.0%	4	K.HGEVCPAGWKPGSDTIKPDVNK.S

AATM_MOUSE

99.6%

212

39.8%

430

47411

9.0

(P05202) Aspartate aminotransferase, mitochondrial precursor (EC 2.6.1.1) (Transaminase A) (Glutamate oxaloacetate transaminase-2)

*	TK090902_P14_mitoch_2D_step12.3303.3303.2	4.5046	0.6539	2326.49	1	4550.0%	11	R.ISVAGVTSGNVGYLAHAIHQVTK.-
*	TK090902_P14_mitoch_2D_step08.2400.2400.3	1.7828	0.0737	2783.28	221	1390.0%	1	-.MALLHSSRILSGMAAAFHPGLAAAASAR.A
*	TK090902_P14_mitoch_2D_step01.2370.2370.1	1.3655	0.295	1272.34	2	5000.0%	1	R.IAATILTSPDLR.K
	TK090902_P14_mitoch_2D_step04.1689.1689.1	1.7395	0.0237	931.76	1	5000.0%	4	R.KAEAQIAAK.N
*	TK090902_P14_mitoch_2D_step14.3457.3457.3	2.7227	0.3222	3563.67	2	1980.0%	2	K.KEGSSHNWQHITDQIGMFCFTGLKPEQVER.L
	TK090902_P14_mitoch_2D_step12.2987.2987.2	1.7514	0.4483	3096.7	1	2120.0%	3	K.IPEQSVLLLHACAHNPTGVDPRPEQWK.E
	TK090902_P14_mitoch_2D_step01.2995.2995.1	1.3455	0.2777	1499.25	1	2920.0%	1	K.EYLPIGGLAEFCK.A
	TK090902_P14_mitoch_2D_step07.2028.2028.1	1.1606	0.0083	1461.65	35	4090.0%	1	K.QWLQEVKGMADR.I
	TK090902_P14_mitoch_2D_step04.2586.2586.1	1.9607	0.1732	1061.09	1	6430.0%	5	R.KQWLQEVK.G
*	TK090902_P14_mitoch_2D_step12.3527.3527.3	3.4946	0.518	3435.35	1	2410.0%	4	K.EGSSHNWQHITDQIGMFCFTGLKPEQVER.L
*	TK090902_P14_mitoch_2D_step05.3100.3100.2	1.8207	0.0447	1797.97	1	4670.0%	4	K.ILIRPLYSNPPLNGAR.I

PDA4_MOUSE

99.6%

100

638

71973

5.3

(P08003) Protein disulfide isomerase A4 precursor (EC 5.3.4.1) (Protein ERp-72) (ERp72)

	TK090902_P14_mitoch_2D_step04.2767.2767.1	2.4083	0.3698	1285.22	1	6000.0%	2	K.RFDVSGYPTLK.I
*	TK090902_P14_mitoch_2D_step12.2200.2200.1	1.7453	0.1392	1316.99	1	6000.0%	9	K.FHHTFSPEIAK.F
*	TK090902_P14_mitoch_2D_step07.5016.5016.1	0.5427	0.0476	1426.41	95	1360.0%	1	K.LVLTHPEKFQSK.Y
*	TK090902_P14_mitoch_2D_step13.2168.2168.1	1.2692	0.3318	1001.96	20	4380.0%	2	K.HALPLVGHR.K
	TK090902_P14_mitoch_2D_step12.2005.2005.2	1.5007	0.161	981.16	12	4380.0%	1	K.RSPPIPLAK.V
	TK090902_P14_mitoch_2D_step03.2185.2185.1	1.2643	0.1923	822.65	4	4290.0%	1	R.SPPIPLAK.V
*	TK090902_P14_mitoch_2D_step01.1745.1745.1	1.1812	0.135	1138.41	3	5000.0%	1	K.TFDAIVMDPK.K
	TK090902_P14_mitoch_2D_step01.1589.1589.1	0.8651	0.0722	1127.16	6	3890.0%	1	R.FDVSGYPTLK.I
	TK090902_P14_mitoch_2D_step01.1589.1589.1	0.8651	0.0722	1127.16	6	3890.0%	1	K.FDVSGYPTIK.I

RAC1_HUMAN

99.6%

192

21450

8.5

(P15154) Ras-related C3 botulinum toxin substrate 1 (p21-Rac1) (Ras-like protein TC25) (P15154) Ras-related C3 botulinum toxin substrate 1 (p21-Rac1) (Ras-like protein TC25)

	TK090902_P14_mitoch_2D_step13.2474.2474.1	2.3391	0.4728	1588.77	1	4230.0%	3	R.HHCPNTPIILVGTK.L

Q99KQ2

99.6%

18.4%

512

54007

7.0

(Q99KQ2) Hypothetical 54.0 kDa protein (Fragment)

	TK090902_P14_mitoch_2D_step06.3184.3184.2	3.8109	0.5061	2202.46	1	4740.0%	4	R.LVSNHSLHETSSVFVDSLTK.V
*	TK090902_P14_mitoch_2D_step05.1920.1920.2	3.0156	0.4742	1821.59	1	4440.0%	3	K.VATVPQHATSGPGPADVSK.V
	TK090902_P14_mitoch_2D_step08.2671.2671.2	2.8435	0.3899	1828.08	1	5310.0%	4	R.RAPSVANIGSHCDLSLK.I
	TK090902_P14_mitoch_2D_step13.3132.3132.2	3.2571	0.542	2306.29	1	4320.0%	3	K.GQHVPGSPFQFTVGPLGEGGAHK.V
	TK090902_P14_mitoch_2D_step04.2831.2831.1	1.407	0.0565	1381.86	1	4170.0%	1	K.YGGPYHIGGSPFK.A
	TK090902_P14_mitoch_2D_step15.2907.2907.2	2.9066	0.5229	2598.74	1	3750.0%	2	K.YKGQHVPGSPFQFTVGPLGEGGAHK.V

RL7A_MOUSE

99.6%

265

29845

10.6

(P12970) 60S ribosomal protein L7a (Surfeit locus protein 3)

	TK090902_P14_mitoch_2D_step11.2043.2043.1	1.01	0.0973	738.01	3	5000.0%	1	K.RPPVLR.A
	TK090902_P14_mitoch_2D_step14.2174.2174.1	1.4661	0.0883	1221.01	30	4000.0%	1	R.RHWGGNVLGPK.S
	TK090902_P14_mitoch_2D_step07.2531.2531.1	2.3713	0.4016	1065.98	1	6670.0%	4	R.HWGGNVLGPK.S
	TK090902_P14_mitoch_2D_step13.1816.1816.1	1.6489	0.2026	833.72	1	6670.0%	2	R.LGHLVHR.K
	TK090902_P14_mitoch_2D_step07.2009.2009.1	1.8737	0.4941	980.12	1	5000.0%	1	K.KVAPAPAVVK.K

DPP4_MOUSE

99.6%

760

87437

6.4

(P28843) Dipeptidyl peptidase IV (EC 3.4.14.5) (DPP IV) (T-cell activation antigen CD26) (Thymocyte-activating molecule) (THAM)

*	TK090902_P14_mitoch_2D_step13.1804.1804.1	0.9994	0.0513	938.82	7	5000.0%	1	K.HICHFPK.D
*	TK090902_P14_mitoch_2D_step10.2140.2140.1	0.9021	0.0272	1073.2	81	2500.0%	2	K.VEPHLPSHR.I
*	TK090902_P14_mitoch_2D_step06.2836.2836.2	3.2045	0.353	1974.98	1	5000.0%	5	R.FRPAEPHFTSDGSSFYK.I
	TK090902_P14_mitoch_2D_step13.1801.1801.2	0.7458	0.043	1721.17	15	1670.0%	1	R.FWYQMILPPHFDK.S
*	TK090902_P14_mitoch_2D_step05.5004.5004.2	1.013	0.0348	2927.14	3	1850.0%	1	K.TPWKVLLGLLGVAALVTIITVPIVLLSK.D

Q9QXG5

99.6%

17.1%

381

43431

7.0

(Q9QXG5) Lysophosphatidic acid phosphatase

*	TK090902_P14_mitoch_2D_step11.2158.2158.2	1.2459	0.1763	1418.29	32	3080.0%	1	K.TTLRGGVLAGQLTK.V
*	TK090902_P14_mitoch_2D_step10.2891.2891.2	1.6504	0.392	2672.31	1	2500.0%	4	R.FDYTVTNLAGGPKPHSHYDTEYR.K
*	TK090902_P14_mitoch_2D_step04.3251.3251.2	1.7725	0.394	2005.89	5	3120.0%	1	R.SPLKPLPLEEQVEWNPK.L
*	TK090902_P14_mitoch_2D_step03.2189.2189.3	1.8425	0.1517	2136.92	1	2380.0%	1	R.GGVLAGQLTKVGMQQMFALGK.R

ADT1_MOUSE

99.6%

37.9%

298

32904

9.7

(P48962) ADP,ATP carrier protein, heart/skeletal muscle isoform T1 (ADP/ATP translocase 1) (Adenine nucleotide translocator 1) (ANT 1) (mANC1)

	TK090902_P14_mitoch_2D_step06.4276.4276.2	0.8797	0.1646	3086.5	24	1300.0%	1	K.GLYQGFSVSVQGIIIYRAAYFGVYDTAK.G
	TK090902_P14_mitoch_2D_step05.3976.3976.2	1.4505	0.2043	2800.95	1	2880.0%	2	R.YFAGNLASGGAAGATSLCFVYPLDFAR.T
	TK090902_P14_mitoch_2D_step01.3243.3243.1	1.4648	0.3221	1449.26	1	3640.0%	2	R.YFPTQALNFAFK.D
	TK090902_P14_mitoch_2D_step15.3547.3547.2	0.7703	0.1026	2499.89	3	1140.0%	1	K.GAWSNVLRGMGGAFVLVLYDEIK.K
	TK090902_P14_mitoch_2D_step05.2581.2581.1	2.0574	0.2144	1139.24	1	5560.0%	5	K.LLLQVQHASK.Q
*	TK090902_P14_mitoch_2D_step03.2961.2961.1	2.1825	0.0105	1222.19	1	5830.0%	2	K.DFLAGGIAAAVSK.T

EHD4_MOUSE

99.6%

541

61481

6.8

(Q9EQP2) EH-domain containing protein 4 (mPAST2)

	TK090902_P14_mitoch_2D_step13.1697.1697.1	1.4231	0.0291	857.79	1	7500.0%	1	K.FHSLKPK.L
*	TK090902_P14_mitoch_2D_step15.2970.2970.2	3.3333	0.4785	2482.58	1	4290.0%	4	K.IKLDGYELPNSLPPHLVPPSHR.K
*	TK090902_P14_mitoch_2D_step08.3134.3134.2	1.3852	0.1361	2242.04	2	2370.0%	4	K.LDGYELPNSLPPHLVPPSHR.K

Q9D404

99.6%

459

48628

7.1

(Q9D404) 4933425A18Rik protein

*	TK090902_P14_mitoch_2D_step03.2009.2009.1	2.2744	0.4932	1274.58	1	5910.0%	1	R.DHACALAISSTK.G
*	TK090902_P14_mitoch_2D_step09.3527.3527.2	1.2813	0.0388	2616.13	2	2200.0%	1	K.GATGHLLGAAGAVEATFTALACYHQK.L

TRBM_MOUSE

99.6%

577

61868

4.6

(P15306) Thrombomodulin precursor (Fetomodulin) (TM)

*	TK090902_P14_mitoch_2D_step08.2472.2472.2	3.3639	0.6469	1825.55	1	5670.0%	2	R.CICAPGFAPKPDEPHK.C

Q8VI52

99.6%

386

43239

5.7

(Q8VI52) Endophilin B1b

	TK090902_P14_mitoch_2D_step13.2836.2836.2	3.7757	0.6264	1685.68	1	6790.0%	1	R.LLLEGISSTHAHHLR.C

HBB2_MOUSE

99.6%

27.4%

146

15747

8.1

(P02089) Hemoglobin beta-2 chain (B2) (Minor)

*	TK090902_P14_mitoch_2D_step05.2681.2681.1	2.7154	0.36	1222.17	1	6500.0%	4	K.KVITAFNEGLK.N
*	TK090902_P14_mitoch_2D_step15.3715.3715.2	2.7317	0.5334	1657.37	1	6000.0%	1	R.LLGNAIVIVLGHHLGK.D
*	TK090902_P14_mitoch_2D_step04.2895.2895.1	1.0979	0.0513	1314.02	174	2500.0%	1	K.VNPDEVGGEALGR.L

SPCB_MOUSE

99.6%

2128

245248

5.3

(P15508) Spectrin beta chain, erythrocyte (Beta-I spectrin)

	TK090902_P14_mitoch_2D_step07.2463.2463.2	4.1017	0.5973	1933.58	1	6880.0%	3	R.VHLENMGSHDIVDGNHR.L
*	TK090902_P14_mitoch_2D_step07.3583.3583.2	1.5049	0.2143	2611.64	1	2730.0%	1	K.HQAFMAELASHQGWLENIDAEGR.Q
	TK090902_P14_mitoch_2D_step08.2855.2855.1	1.4784	0.2751	1256.2	5	5000.0%	2	K.HRPDLIDFDK.L
*	TK090902_P14_mitoch_2D_step09.3581.3581.2	1.1926	0.0699	2705.43	1	2080.0%	1	K.AVASEDMPESLPEAEQLLQQHAAIK.E
*	TK090902_P14_mitoch_2D_step04.2131.2131.1	1.4475	0.2229	1143.08	1	5000.0%	1	K.RVEEQVNLR.K
	TK090902_P14_mitoch_2D_step09.2073.2073.1	1.6317	0.0145	916.82	2	8330.0%	1	K.RHEAFEK.S
	TK090902_P14_mitoch_2D_step12.2771.2771.2	2.7145	0.354	1498.43	1	6820.0%	1	K.HRPDLIDFDKLK.D
*	TK090902_P14_mitoch_2D_step06.3153.3153.1	3.2609	0.4031	1547.91	1	5910.0%	3	K.HKEFLEELEESR.G
	TK090902_P14_mitoch_2D_step04.2089.2089.1	2.0321	0.3468	1128.94	1	6880.0%	1	R.IHCLENVDK.A

COPE_MOUSE

99.6%

42.4%

144

16280

5.6

(O89079) Coatomer epsilon subunit (Epsilon-coat protein) (Epsilon-COP) (Fragment)

	TK090902_P14_mitoch_2D_step10.3913.3913.2	2.4239	0.5764	2969.0	1	3270.0%	4	K.DSGHPETLINLIVLSQHLGKPPEVTNR.Y
	TK090902_P14_mitoch_2D_step09.5111.5111.3	0.8665	0.1151	3728.27	2	980.0%	1	K.CSPTLLLLNGQAACHSAQGRWETAEGVLQEALDK.D

PSPB_MOUSE

99.6%

100

21.8%

377

41728

6.2

(P50405) Pulmonary surfactant-associated protein B precursor (SP-B) (Pulmonary surfactant-associated proteolipid SPL(Phe))

*	TK090902_P14_mitoch_2D_step12.4087.4087.2	3.1002	0.6161	2993.72	1	3150.0%	5	K.GVLAVAVSQVCHVVPLVVGGICQCLAER.Y
*	TK090902_P14_mitoch_2D_step10.4077.4077.3	1.6697	0.181	3578.04	2	1830.0%	3	R.ALGHCLQEVWGHAGANDLCQECEDIVHLLTK.M
*	TK090902_P14_mitoch_2D_step05.2301.2301.1	1.5179	0.2136	1300.01	1	4500.0%	8	K.AICNHVGLCPR.G
*	TK090902_P14_mitoch_2D_step01.2324.2324.1	0.6183	0.0135	1345.09	34	1820.0%	1	R.YTVLLLDALLGR.V

UCR2_MOUSE

99.6%

26.3%

453

48235

9.3

(Q9DB77) Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial precursor (EC 1.10.2.2) (Complex III subunit II)

*	TK090902_P14_mitoch_2D_step07.2405.2405.1	1.3007	0.1021	1575.89	46	3210.0%	1	K.RGNNTTSLLSQSVAK.G
*	TK090902_P14_mitoch_2D_step05.3225.3225.2	1.7219	0.4222	1413.62	1	4620.0%	2	R.MALVGLGVSHSVLK.Q
*	TK090902_P14_mitoch_2D_step06.3329.3329.2	2.9773	0.5449	2180.86	1	4710.0%	2	K.ITSEELHYFVQNHFTSAR.M
*	TK090902_P14_mitoch_2D_step08.4220.4220.3	4.4135	0.6485	4152.52	1	2310.0%	4	R.EQNGDNLVHAAIVAESAAIGNAEANAFSVLQHLLGAGPHIK.R
*	TK090902_P14_mitoch_2D_step15.4592.4592.3	1.0059	0.33	3602.3	4	830.0%	1	R.ENMAYTVEGIRSDIEILMEFLLNVTTAPEFR.R

ENPL_MOUSE

99.6%

166

28.4%

802

92476

4.8

(P08113) Endoplasmin precursor (Endoplasmic reticulum protein 99) (94 kDa glucose-regulated protein) (GRP94) (ERP99) (Polymorphic tumor rejection antigen 1) (Tumor rejection antigen gp96)

	TK090902_P14_mitoch_2D_step12.4575.4575.3	1.4001	0.01	3103.82	7	1900.0%	1	K.GYEVIYLTEPVDEYCIQALPEFDGKR.F
	TK090902_P14_mitoch_2D_step04.2321.2321.1	1.37	0.1132	1005.28	34	5000.0%	1	K.KTFEINPR.H
	TK090902_P14_mitoch_2D_step08.2144.2144.1	1.4142	0.0316	637.69	1	7500.0%	6	R.HPLIR.D
	TK090902_P14_mitoch_2D_step04.2901.2901.1	1.4262	0.0518	946.06	38	5000.0%	1	R.GTTITLVLK.E
*	TK090902_P14_mitoch_2D_step15.2436.2436.2	0.9808	0.0023	2075.37	51	1760.0%	1	K.TETVEEPLEEDEAAKEEK.E
	TK090902_P14_mitoch_2D_step01.1674.1674.1	1.647	0.2703	1515.88	1	4230.0%	2	K.NLLHVTDTGVGMTR.E
*	TK090902_P14_mitoch_2D_step05.3148.3148.3	1.6406	0.1325	2754.61	1	1980.0%	1	K.TVMDLAVVLFETATLRSGYLLPDTK.A
	TK090902_P14_mitoch_2D_step01.1841.1841.1	1.3173	0.0148	965.02	3	5710.0%	1	K.LIINSLYK.N
	TK090902_P14_mitoch_2D_step14.3055.3055.2	1.5684	0.1032	2290.31	1	2370.0%	2	K.ESDDPMAYIHFTAEGEVTFK.S
*	TK090902_P14_mitoch_2D_step06.2896.2896.2	4.2271	0.6751	2253.06	1	5830.0%	9	R.FQSSHHSTDITSLDQYVER.M
	TK090902_P14_mitoch_2D_step04.2097.2097.2	1.2442	0.0067	1931.54	142	1880.0%	1	K.EFGTNIKLGVIEDHSNR.T
*	TK090902_P14_mitoch_2D_step04.3431.3431.2	1.0593	0.0861	2032.09	40	2220.0%	1	R.LISLTDENALAGNEELTVK.I
	TK090902_P14_mitoch_2D_step01.2098.2098.1	1.6755	0.2763	1488.01	1	3460.0%	4	K.GVVDSDDLPLNVSR.E
	TK090902_P14_mitoch_2D_step09.4040.4040.2	2.3201	0.3695	2545.27	1	3420.0%	4	K.TVWDWELMNDIKPIWQRPSK.E
	TK090902_P14_mitoch_2D_step05.1904.1904.1	0.7437	0.0236	863.4	73	5000.0%	1	K.RFQNVAK.E

ECH1_MOUSE

99.6%

327

36118

7.7

(O35459) Delta3,5-delta2,4-dienoyl-CoA isomerase, mitochondrial precursor (EC 5.3.3.-)

*	TK090902_P14_mitoch_2D_step04.2337.2337.2	2.533	0.4942	2389.21	1	4250.0%	1	K.RAPEEVSDHNYESIQVTSAQK.H
*	TK090902_P14_mitoch_2D_step13.2190.2190.2	3.3872	0.587	1472.23	1	7270.0%	3	K.HVLHVQLNRPEK.R
	TK090902_P14_mitoch_2D_step01.2063.2063.1	1.5193	0.2913	1494.86	1	3850.0%	1	K.MMADEALDSGLVSR.V
*	TK090902_P14_mitoch_2D_step04.3583.3583.3	1.4793	0.0885	3612.52	100	1140.0%	1	K.TFTVIEKCPKPVIAAIHGGCIGGGVDLVSACDIR.Y

SPCN_HUMAN

99.6%

181

2472

284281

5.3

(Q13813) Spectrin alpha chain, brain (Spectrin, non-erythroid alpha chain) (Alpha-II spectrin) (Fodrin alpha chain)

*	TK090902_P14_mitoch_2D_step03.2362.2362.2	1.6916	0.4661	1777.06	1	4640.0%	1	K.LIQNNHYAMEDVATR.R
*	TK090902_P14_mitoch_2D_step04.2578.2578.1	2.145	0.4045	1046.35	2	6250.0%	2	K.KLLEATELK.G
	TK090902_P14_mitoch_2D_step05.3003.3003.1	1.7701	0.369	1460.62	1	5000.0%	1	R.LMVHTVATFNSIK.E
*	TK090902_P14_mitoch_2D_step12.4564.4564.2	0.7413	0.0705	2402.88	10	1820.0%	1	K.SADESGQALLAAGHYASDEVREK.L
	TK090902_P14_mitoch_2D_step12.2659.2659.2	1.2879	0.1046	1877.27	58	2330.0%	1	K.HQLLEADISAHEDRLK.D
*	TK090902_P14_mitoch_2D_step09.3419.3419.2	5.3651	0.6821	2179.53	1	6320.0%	6	K.KHEALMSDLSAYGSSIQALR.E
	TK090902_P14_mitoch_2D_step10.2644.2644.2	3.7339	0.6267	1764.86	1	7500.0%	2	K.KHQLLEADISAHEDR.L
	TK090902_P14_mitoch_2D_step10.3912.3912.2	1.0584	0.0077	2388.64	26	1900.0%	1	K.EAALTSEEVGADLEQVEVLQKK.F
*	TK090902_P14_mitoch_2D_step13.1892.1892.2	4.3779	0.6797	1686.57	1	7860.0%	1	K.KHQALQAEIAGHEPR.I
*	TK090902_P14_mitoch_2D_step04.3278.3278.1	2.5839	0.4738	1419.1	1	5420.0%	3	K.KGDILTLLNSTNK.D
	TK090902_P14_mitoch_2D_step01.2349.2349.1	1.2726	0.1796	1088.48	4	4440.0%	1	K.DLASVNNLLK.K
*	TK090902_P14_mitoch_2D_step12.2056.2056.2	1.4493	0.0667	2038.01	3	2650.0%	1	K.LQIASDENYKDPTNLQGK.L
*	TK090902_P14_mitoch_2D_step08.4672.4672.2	0.8266	0.0025	2697.18	1	1820.0%	1	R.NVEDIELWLYEVEGHLASDDYGK.D
*	TK090902_P14_mitoch_2D_step05.2400.2400.2	4.5513	0.5894	1559.43	1	7690.0%	4	K.HQALQAEIAGHEPR.I
	TK090902_P14_mitoch_2D_step07.3309.3309.3	1.3219	0.0051	3945.4	64	1320.0%	1	K.VAEDLESEGLMAEEVQAVQQQEVYGMMPRDETDSK.T
	TK090902_P14_mitoch_2D_step09.4091.4091.2	3.396	0.604	2879.36	1	3200.0%	4	R.AGTFQAFEQFGQQLLAHGHYASPEIK.Q
	TK090902_P14_mitoch_2D_step05.3189.3189.2	3.4616	0.5724	2221.06	1	4750.0%	1	K.RLEAELAAHEPAIQGVLDTGK.K

Q99PL5

99.6%

1605

172878

9.3

(Q99PL5) Ribosome binding protein 1 (Ribosome receptor protein) (RRp) (P180)

	TK090902_P14_mitoch_2D_step04.1875.1875.1	2.3964	0.359	1552.51	1	4620.0%	1	K.HMAAASAECQNYAK.E
*	TK090902_P14_mitoch_2D_step04.3201.3201.2	1.891	0.3358	1568.82	1	4620.0%	1	K.KPPTLEPSMDIVLK.L
*	TK090902_P14_mitoch_2D_step03.3998.3998.2	2.2842	0.4247	2974.21	1	3200.0%	1	K.ETLLALLPGLSISAHQNYAEWLQEFK.E
*	TK090902_P14_mitoch_2D_step04.1725.1725.2	0.7724	0.0117	999.2	13	3120.0%	1	R.AQTSHANLR.A
*	TK090902_P14_mitoch_2D_step04.1967.1967.1	1.4144	0.1247	944.97	2	5710.0%	1	K.KLQEQLGK.A
	TK090902_P14_mitoch_2D_step01.4490.4490.1	0.807	0.0506	1019.31	32	2780.0%	1	K.KGEGAQNQGK.K

TALI_MOUSE

99.6%

2541

269831

6.1

(P26039) Talin

*	TK090902_P14_mitoch_2D_step13.3758.3758.3	1.6508	0.0992	4569.3	1	1480.0%	1	R.AATAPLLEAVDNLSAFASNPEFSSVPAQISPEGRAAMEPIVISAK.T
	TK090902_P14_mitoch_2D_step09.2240.2240.1	1.0006	0.1107	1013.94	2	5000.0%	3	K.KLEQLKPR.A
	TK090902_P14_mitoch_2D_step05.3699.3699.2	1.5892	0.3517	1776.51	2	3440.0%	1	K.RVAGSVTELIQAAEAMK.G
*	TK090902_P14_mitoch_2D_step07.4237.4237.3	1.1761	0.2139	4430.39	2	950.0%	1	R.GTQACITAASAVSGIIADLDTTIMFATAGTLNREGAETFADHR.E
*	TK090902_P14_mitoch_2D_step05.3855.3855.2	0.8746	0.0387	2591.13	105	1400.0%	1	K.AVSSAIAKLLGEIAQGNENYAGIAAR.D
	TK090902_P14_mitoch_2D_step11.2143.2143.2	0.8562	0.0665	1520.51	3	3750.0%	1	R.IGITNHDEYSLVR.E
	TK090902_P14_mitoch_2D_step07.2673.2673.1	1.5286	0.4117	1337.53	1	3750.0%	4	K.VSHVLAALQAGNR.G
	TK090902_P14_mitoch_2D_step13.4501.4501.2	0.5567	0.093	2754.57	6	930.0%	1	R.GSQAQPDSPSAQLALIAASQSFLQPGGK.M
*	TK090902_P14_mitoch_2D_step12.2041.2041.2	1.2112	0.0296	2047.95	9	2500.0%	1	K.AAQKAAAFEDQENETVVVK.E
	TK090902_P14_mitoch_2D_step07.4136.4136.2	4.5609	0.681	2094.18	1	4750.0%	2	R.GVGAAATAVTQALNELLQHVK.A
	TK090902_P14_mitoch_2D_step11.2555.2555.2	1.0039	0.0872	1405.14	267	2690.0%	1	K.GISMSSSKLLLAAK.A

ACDL_MOUSE

99.6%

188

430

48082

8.2

(P51174) Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) (LCAD)

*	TK090902_P14_mitoch_2D_step13.1286.1286.1	0.5907	0.03	1232.76	9	1000.0%	1	K.ELIARQIVSDS.-
*	TK090902_P14_mitoch_2D_step08.3042.3042.1	1.7127	0.308	1409.04	1	5000.0%	4	R.RIFSSEHDIFR.E
	TK090902_P14_mitoch_2D_step07.1933.1933.1	0.7853	0.0892	887.84	67	4170.0%	1	K.THICVTR.A
*	TK090902_P14_mitoch_2D_step09.3123.3123.2	3.3562	0.5859	2086.51	1	5670.0%	4	R.KFFQEEVIPHHTEWEK.A
*	TK090902_P14_mitoch_2D_step05.2045.2045.1	2.3468	0.278	1264.97	1	6000.0%	11	K.TVAHIQTVQHK.L
*	TK090902_P14_mitoch_2D_step01.1661.1661.1	1.2417	0.1085	1252.98	2	4440.0%	2	R.IFSSEHDIFR.E

Q9UEV9

99.6%

2602

278190

5.7

(Q9UEV9) Actin-binding protein homolog ABP-278

	TK090902_P14_mitoch_2D_step08.3766.3766.2	1.3996	0.2122	2139.1	2	2630.0%	4	K.SGCIVNNLAEFTVDPKDAGK.A
	TK090902_P14_mitoch_2D_step09.3295.3295.2	4.5686	0.5804	2312.46	1	5000.0%	7	R.GQHVTGSPFQFTVGPLGEGGAHK.V
	TK090902_P14_mitoch_2D_step09.3096.3096.2	1.7133	0.2674	2196.33	2	2860.0%	2	K.AHGPGLEGGLVGKPAEFTIDTK.G
	TK090902_P14_mitoch_2D_step14.2860.2860.2	2.4514	0.3161	1635.19	1	6150.0%	1	K.RLPNNHIGISFIPR.E
	TK090902_P14_mitoch_2D_step13.1716.1716.1	1.5966	0.312	1047.99	1	5560.0%	1	K.LKPGAPLKPK.L

Q9CT05

99.6%

112

18.8%

654

75395

5.3

(Q9CT05) 2610027H02Rik protein (Fragment)

	TK090902_P14_mitoch_2D_step09.4667.4667.1	0.7666	0.0155	1300.73	184	2000.0%	1	K.ENSLKTDDYGR.D
	TK090902_P14_mitoch_2D_step04.2913.2913.1	1.3292	0.1291	1159.02	38	4380.0%	1	R.LAQFVEHWK.E
	TK090902_P14_mitoch_2D_step07.3107.3107.2	3.0614	0.5986	2244.44	1	4410.0%	3	R.QEFAQHANAFHQWIQETR.T
	TK090902_P14_mitoch_2D_step04.2010.2010.1	1.877	0.2187	1279.84	2	5450.0%	1	R.ALSSEGKPYVTK.E
	TK090902_P14_mitoch_2D_step02.3421.3421.2	1.7042	0.3209	2496.62	2	2730.0%	1	K.QETFDAGLQAFQQEGIANITALK.D
	TK090902_P14_mitoch_2D_step04.2271.2271.1	1.6953	0.1932	1498.73	3	4090.0%	5	R.MQHNLEQQIQAR.N
	TK090902_P14_mitoch_2D_step11.3689.3689.2	1.07	0.0405	2778.36	2	1880.0%	1	R.EAHDAFRSSLSSAQADFNQLAELDR.Q
	TK090902_P14_mitoch_2D_step08.2700.2700.1	2.869	0.3831	1591.85	1	5000.0%	8	K.KHEAFETDFTVHK.D

CTN1_MOUSE

99.6%

12.4%

906

100106

6.2

(P26231) Alpha-1 catenin (102 kDa cadherin-associated protein) (CAP102) (Alpha E-catenin)

	TK090902_P14_mitoch_2D_step09.2513.2513.3	1.5096	0.0331	2814.14	103	1480.0%	1	K.VKAEVQNLGGELVVSGVDSAMSLIQAAK.N
	TK090902_P14_mitoch_2D_step05.3884.3884.2	1.275	0.2612	2813.48	1	1730.0%	1	R.MSASQLEALCPQVINAALALAAKPQSK.L
	TK090902_P14_mitoch_2D_step09.3603.3603.2	4.6258	0.0875	2086.35	1	6390.0%	1	K.KAHVLAASVEQATENFLEK.G
	TK090902_P14_mitoch_2D_step06.4289.4289.2	0.7056	0.0629	2841.49	43	1000.0%	1	R.KAVMDHVSDSFLETNVPLLVLIEAAK.N
	TK090902_P14_mitoch_2D_step05.3205.3205.1	1.5534	0.2032	1369.68	3	3640.0%	1	K.HVNPVQALSEFK.A

KTHY_MOUSE

99.6%

227

25583

9.0

(P97930) Thymidylate kinase (EC 2.7.4.9) (dTMP kinase)

*	TK090902_P14_mitoch_2D_step09.3213.3213.2	2.3473	0.504	1999.67	1	5310.0%	2	K.KTELEDHSVHLLFSANR.W

TRFE_MOUSE

99.6%

114

20.9%

697

76724

7.2

(Q921I1) Serotransferrin precursor (Transferrin) (Siderophilin) (Beta-1-metal binding globulin)

*	TK090902_P14_mitoch_2D_step04.2038.2038.1	1.9272	0.3693	1113.82	1	5000.0%	3	K.KTSYPDCIK.A
*	TK090902_P14_mitoch_2D_step04.2661.2661.1	2.3177	0.3072	1478.76	1	5830.0%	2	K.KGTDFQLNQLEGK.K
*	TK090902_P14_mitoch_2D_step10.1771.1771.2	0.9483	0.1274	1623.76	437	1540.0%	1	R.TAGWNIPMGMLYNR.I
*	TK090902_P14_mitoch_2D_step05.2512.2512.2	4.0924	0.5426	2010.79	1	6470.0%	6	K.DFASCHLAQAPNHVVVSR.K
*	TK090902_P14_mitoch_2D_step01.4062.4062.1	0.9295	0.0221	1562.06	1	3080.0%	1	R.SAGWVIPIGLLFCK.L
*	TK090902_P14_mitoch_2D_step03.2304.2304.2	1.6334	0.2946	1660.16	1	5000.0%	1	R.KPVDQYEDCYLAR.I
*	TK090902_P14_mitoch_2D_step11.2566.2566.2	1.3499	0.1124	1960.19	107	2060.0%	1	K.GDVAFVKHQTVLDNTEGK.N
	TK090902_P14_mitoch_2D_step03.1742.1742.1	1.1266	0.0022	916.72	4	4290.0%	1	K.VAQEHFGK.G
*	TK090902_P14_mitoch_2D_step01.2336.2336.1	2.0772	0.2253	1161.41	1	6250.0%	1	K.EDLIWEILK.V
*	TK090902_P14_mitoch_2D_step08.1984.1984.1	1.1862	0.1873	951.91	1	5000.0%	7	R.IPSHAVVAR.K
*	TK090902_P14_mitoch_2D_step01.1973.1973.1	1.7361	0.0759	1316.3	4	5500.0%	1	K.HTTIFEVLPEK.A
*	TK090902_P14_mitoch_2D_step08.2431.2431.1	1.3739	0.1382	1258.02	1	5560.0%	3	R.LLEACTFHKH.-

Q91ZB1

99.6%

559

59088

6.0

(Q91ZB1) Dihydrolipoamide S-acetyltransferase (Fragment)

*	TK090902_P14_mitoch_2D_step03.3733.3733.2	1.0624	0.2122	2393.54	2	2140.0%	1	K.IXVPEGTRDVPLGAPXCIIVEK.Q
*	TK090902_P14_mitoch_2D_step01.3164.3164.1	1.5258	0.2171	1526.2	2	3080.0%	2	R.DVPLGAPXCIIVEK.Q
	TK090902_P14_mitoch_2D_step12.2048.2048.3	1.7816	0.1289	3142.64	59	1250.0%	1	K.AAPAAAAAMAPPGPRVAPAPAGVFTDIPISNIR.R
	TK090902_P14_mitoch_2D_step03.1960.1960.1	2.3629	0.3655	1321.69	1	6070.0%	2	K.AAPAAAAAMAPPGPR.V
	TK090902_P14_mitoch_2D_step01.0256.0256.1	1.3	0.1212	861.64	26	5000.0%	1	R.VFVSPLAK.K

HCD2_MOUSE

99.6%

261

27419

8.4

(O08756) 3-hydroxyacyl-CoA dehydrogenase type II (EC 1.1.1.35) (Type II HADH) (Endoplasmic reticulum-associated amyloid beta-peptide binding protein)

*	TK090902_P14_mitoch_2D_step04.2851.2851.2	3.3037	0.47	1853.04	1	6250.0%	1	K.KLGESCIFAPANVTSEK.E

MAP4_MOUSE

99.6%

10.3%

1125

117675

5.0

(P27546) Microtubule-associated protein 4 (MAP 4)

*	TK090902_P14_mitoch_2D_step09.3256.3256.3	3.6432	0.5697	4702.7	1	1800.0%	1	K.KKPCLDTSQVEGIPSSKPTLLANGDHGMEGNNTAGSPTDFLEER.V
*	TK090902_P14_mitoch_2D_step05.3744.3744.3	1.5271	0.1792	3019.89	2	1530.0%	1	K.TEAATTAGKPEPNAVTKAAGSIASAQKPPAGK.V
*	TK090902_P14_mitoch_2D_step04.3082.3082.1	0.864	0.0338	1377.67	37	1820.0%	1	K.TEFIPLLDGDEK.T
*	TK090902_P14_mitoch_2D_step05.3248.3248.3	1.3055	0.0432	3087.1	86	1390.0%	1	K.DVTLPLEAERPLVTDMTPSLETEMTLGK.E

AAC2_MOUSE

99.6%

894

103653

5.5

(Q9JI91) Alpha-actinin 2 (Alpha actinin skeletal muscle isoform 2) (F-actin cross linking protein)

	TK090902_P14_mitoch_2D_step07.2296.2296.1	1.5496	0.0546	1304.28	2	4440.0%	2	K.HTNYTMEHIR.V
	TK090902_P14_mitoch_2D_step08.2414.2414.2	3.3295	0.625	1756.3	1	7140.0%	2	R.KHEAFESDLAAHQDR.V
	TK090902_P14_mitoch_2D_step07.3833.3833.3	1.061	0.0615	4456.6	26	900.0%	1	R.IMTLVDPNGQGTVTFQSFIDFMTRETADTDTAEQVIASFR.I

Q91V41

99.6%

14.4%

215

23897

6.2

(Q91V41) Adult male kidney cDNA, RIKEN full-length enriched library, clone:0610030G24, full insert sequence (Unknown) (Protein for MGC:6512)

	TK090902_P14_mitoch_2D_step06.2708.2708.2	1.552	0.5449	3151.93	1	2240.0%	2	K.IYQNIQDGSLDLNAAESGVQHKPSAPQGGR.L
	TK090902_P14_mitoch_2D_step09.2808.2808.3	3.3652	0.6095	3282.65	1	3080.0%	4	K.KIYQNIQDGSLDLNAAESGVQHKPSAPQGGR.L

Q91ZA3

99.6%

20.7%

724

79660

7.4

(Q91ZA3) Propionyl CoA-carboxylase alpha-subunit

	TK090902_P14_mitoch_2D_step07.2919.2919.2	3.1638	0.4517	1926.74	1	6330.0%	2	R.HKQEDIPISGWAVECR.V
	TK090902_P14_mitoch_2D_step12.3463.3463.2	1.277	0.0224	2284.77	149	1750.0%	1	R.VDSGIQPGSDISIYYDPMISK.L
	TK090902_P14_mitoch_2D_step06.1608.1608.1	0.9662	0.0321	1217.7	22	1820.0%	1	R.QAMGEQAVALAK.A
	TK090902_P14_mitoch_2D_step13.1312.1312.1	0.9325	0.1131	1218.91	5	3330.0%	1	R.EVIINTRFVK.G
	TK090902_P14_mitoch_2D_step07.4092.4092.2	0.761	0.0455	2173.3	16	1320.0%	1	R.NQLLAIASSVFVASQLRAQR.F
	TK090902_P14_mitoch_2D_step01.4503.4503.1	1.077	0.1088	712.83	90	4000.0%	1	K.VHILTK.L
	TK090902_P14_mitoch_2D_step05.2996.2996.2	1.8701	0.2469	1639.22	2	3850.0%	2	R.LSQYQEPIHLPGVR.V
	TK090902_P14_mitoch_2D_step07.2816.2816.1	1.6536	0.3917	1121.05	2	5000.0%	1	R.GVTHNIPLLR.E
	TK090902_P14_mitoch_2D_step02.4577.4577.3	1.1063	0.2432	4321.37	74	810.0%	2	K.VPKDTSSTLCSPMPGVVVAVSVKPGDMVAEGQEICVIEAMK.M

SODM_MOUSE

99.6%

192

37.4%

222

24603

8.6

(P09671) Superoxide dismutase [Mn], mitochondrial precursor (EC 1.15.1.1)

*	TK090902_P14_mitoch_2D_step01.1631.1631.1	1.8305	0.3766	1443.26	1	4230.0%	4	K.GDVTTQVALQPALK.F
*	TK090902_P14_mitoch_2D_step03.1824.1824.1	1.3978	0.0486	833.48	49	5000.0%	2	K.YHEALAK.G
*	TK090902_P14_mitoch_2D_step13.2378.2378.2	1.2328	0.0059	2524.8	12	2380.0%	1	K.HHAAYVNNLNATEEKYHEALAK.G
*	TK090902_P14_mitoch_2D_step08.2254.2254.2	3.7041	0.4448	1714.61	1	7500.0%	9	K.HHAAYVNNLNATEEK.Y
*	TK090902_P14_mitoch_2D_step08.3374.3374.2	2.0902	0.3938	2144.26	1	4170.0%	9	K.FNGGGHINHTIFWTNLSPK.G
	TK090902_P14_mitoch_2D_step13.3414.3414.3	4.0631	0.5501	3229.31	1	2410.0%	3	K.HSLPDLPYDYGALEPHINAQIMQLHHSK.H

Q9DAB4

99.6%

14.3%

391

42890

6.7

(Q9DAB4) 1700015E05Rik protein

	TK090902_P14_mitoch_2D_step06.2941.2941.2	4.0983	0.6567	1819.33	1	6560.0%	5	K.HQSLGGQYGVQGFPTIK.I
	TK090902_P14_mitoch_2D_step01.2316.2316.1	2.301	0.5047	1531.12	1	5000.0%	4	K.NLEPEWAAAATEVK.E
	TK090902_P14_mitoch_2D_step04.3747.3747.2	2.5764	0.5559	2650.35	1	3260.0%	3	K.TCEEHQLCVVAVLPHILDTGAAGR.N
	TK090902_P14_mitoch_2D_step10.3631.3631.3	5.4932	0.5697	2777.76	1	3650.0%	3	K.KTCEEHQLCVVAVLPHILDTGAAGR.N

Q8QZU4

99.6%

24.7%

405

43913

8.2

(Q8QZU4) Similar to hydroxyacyl-coenzyme A dehydrogenase/3-ketoacyl-coenzyme A thiolase/enoyl-coenzyme A hydratase (Trifunctional protein), alpha subunit (Fragment)

*	TK090902_P14_mitoch_2D_step02.4012.4012.3	3.5355	0.5208	3614.87	1	2570.0%	1	K.KLDALTTGFGFPVGAATLADEVGVDVAQHVAEDLGK.A
*	TK090902_P14_mitoch_2D_step14.2983.2983.3	1.1784	0.0029	3627.43	17	1410.0%	1	K.EVESVTPEHCIFASNTSALPINQIAAVSKRPEK.V
	TK090902_P14_mitoch_2D_step03.2334.2334.1	1.4905	2.0E-4	673.47	2	7000.0%	3	K.VIIVVK.D
*	TK090902_P14_mitoch_2D_step06.3288.3288.2	4.469	0.67	2876.2	1	4580.0%	4	R.KYESAYGTQFTPCQLLLDHANNSSK.K

EZRI_MOUSE

99.6%

152

585

69215

6.1

(P26040) Ezrin (p81) (Cytovillin) (Villin 2)

	TK090902_P14_mitoch_2D_step04.3147.3147.2	1.3459	0.0969	1312.05	1	4000.0%	1	K.KAPDFVFYAPR.L
	TK090902_P14_mitoch_2D_step09.2679.2679.1	1.9949	0.0486	1090.22	2	6250.0%	8	K.KFVIKPIDK.K
	TK090902_P14_mitoch_2D_step10.2447.2447.1	1.3333	0.0495	1178.65	18	3120.0%	4	R.IQVWHAEHR.G
*	TK090902_P14_mitoch_2D_step05.2596.2596.1	1.3106	0.1041	1423.89	14	3640.0%	1	K.EMHKSGYLSSER.L
	TK090902_P14_mitoch_2D_step06.2229.2229.2	2.183	0.4869	1495.24	1	6820.0%	1	R.THNDIIHNENMR.Q
	TK090902_P14_mitoch_2D_step04.2638.2638.1	2.1272	0.2706	961.07	1	7140.0%	3	K.FVIKPIDK.K
	TK090902_P14_mitoch_2D_step08.2268.2268.1	1.8062	0.3136	1474.96	2	4090.0%	4	R.RKPDTIEVQQMK.A
	TK090902_P14_mitoch_2D_step04.2178.2178.1	2.8328	0.3963	1318.93	1	6500.0%	4	R.KPDTIEVQQMK.A
	TK090902_P14_mitoch_2D_step06.3528.3528.3	1.7198	0.0454	2870.32	3	1900.0%	1	-.PKPINVRVTTMDAELEFAIQPNTTGK.Q
*	TK090902_P14_mitoch_2D_step04.2147.2147.1	2.162	0.0746	989.72	2	6430.0%	1	R.KENPVQFK.F
	TK090902_P14_mitoch_2D_step13.1958.1958.3	1.5936	0.1377	1745.56	79	2680.0%	1	R.KPDTIEVQQMKAQAR.E
	TK090902_P14_mitoch_2D_step07.2549.2549.1	1.67	0.0911	1088.46	1	6250.0%	2	K.FVIKPIDKK.A

Q8QZU3

99.6%

313

34608

6.3

(Q8QZU3) Similar to hexose-6-phosphate dehydrogenase (Glucose 1-dehydrogenase) (Fragment)

*	TK090902_P14_mitoch_2D_step07.3415.3415.2	2.6147	0.5613	2634.96	1	3640.0%	3	R.CVPLSDPDSNFQGLQAHLLQHVR.V

RS3_MOUSE

99.6%

17.3%

243

26674

9.7

(P17073) 40S ribosomal protein S3

	TK090902_P14_mitoch_2D_step04.2307.2307.1	2.474	0.4408	1575.79	1	4330.0%	3	K.GGKPEPPAMPQPVPTA.-
	TK090902_P14_mitoch_2D_step08.3104.3104.2	2.3478	0.5078	2913.03	1	3400.0%	1	K.KPLPDHVSIVEPKDEILPTTPISEQK.G
	TK090902_P14_mitoch_2D_step07.2517.2517.1	2.5677	0.5133	1462.04	1	5000.0%	6	K.KPLPDHVSIVEPK.D

Q9D6U8

99.6%

155

17725

9.9

(Q9D6U8) 2310056P07Rik protein (RIKEN cDNA 2310056P07 gene)

*	TK090902_P14_mitoch_2D_step13.2028.2028.2	3.112	0.5644	1505.66	1	6670.0%	1	R.HGVPLHKPTDFEK.K
*	TK090902_P14_mitoch_2D_step11.2691.2691.2	2.2274	0.4467	1457.1	1	5910.0%	2	K.RHESLTSLNLER.K

NCB2_MOUSE

99.6%

420

50305

5.1

(P81117) Nucleobindin 2 precursor (DNA-binding protein NEFA)

*	TK090902_P14_mitoch_2D_step11.3054.3054.2	3.3251	0.5204	2020.72	1	5290.0%	3	K.AKLDALQDTGMNHHLLLK.Q

O55181

99.6%

280

31889

8.4

(O55181) RBP associated molecule RAM14-1

*	TK090902_P14_mitoch_2D_step04.2753.2753.1	1.8119	0.4072	1489.83	1	4580.0%	1	K.CLHPLASETFVSK.D
*	TK090902_P14_mitoch_2D_step10.2727.2727.2	3.1674	0.5828	2072.45	1	6000.0%	4	K.RFVFHNEQVYCPDCAK.K
	TK090902_P14_mitoch_2D_step06.2890.2890.2	2.4174	0.3658	2419.41	1	3680.0%	1	K.GSSVVAYEGQSWHDYCFHCK.K

IDHP_MOUSE

99.6%

17.2%

523

58749

8.7

(P54071) Isocitrate dehydrogenase [NADP], mitochondrial precursor (EC 1.1.1.42) (Oxalosuccinate decarboxylase) (IDH) (NADP+-specific ICDH) (IDP) (ICD-M)

	TK090902_P14_mitoch_2D_step09.1816.1816.1	0.9551	0.1945	955.67	1	4290.0%	1	R.HAHGDQYK.A
	TK090902_P14_mitoch_2D_step08.3084.3084.1	1.5404	4.0E-4	1440.04	1	5000.0%	6	R.LVPGWTKPITIGR.H
*	TK090902_P14_mitoch_2D_step02.2981.2981.1	1.2804	0.1058	1278.49	2	4000.0%	5	K.LILPHVDVQLK.Y
	TK090902_P14_mitoch_2D_step01.1721.1721.1	2.7994	0.5109	1385.88	1	5420.0%	3	K.DLAGCIHGLSNVK.L
*	TK090902_P14_mitoch_2D_step01.0038.0038.1	1.1678	0.1228	705.49	36	7000.0%	1	K.LVFTPK.N
	TK090902_P14_mitoch_2D_step01.3208.3208.1	1.3441	0.0714	1247.79	4	4000.0%	2	R.LIDDMVAQVLK.S
	TK090902_P14_mitoch_2D_step03.2220.2220.1	1.5811	0.3096	1231.09	8	3500.0%	1	R.GKLDGNQDLIR.F
*	TK090902_P14_mitoch_2D_step04.2702.2702.2	3.5758	0.5562	1977.88	1	6250.0%	2	R.IKVEKPVVEMDGDEMTR.I

GBLP_HUMAN

99.6%

17.4%

317

35077

7.7

(P25388) Guanine nucleotide-binding protein beta subunit-like protein 12.3 (P205) (Receptor of activated protein kinase C 1) (RACK1) (Receptor for activated C kinase) (P25388) Guanine nucleotide-binding protein beta subunit-like protein 12.3 (P205) (Receptor of activated protein kinase C 1) (RACK1) (Receptor for activated C kinase)

	TK090902_P14_mitoch_2D_step08.5104.5104.3	1.4761	0.3095	2964.95	1	1480.0%	1	R.GHSHFVSDVVISSDGQFALSGSWDGTLR.L
	TK090902_P14_mitoch_2D_step07.2716.2716.2	3.8952	0.6771	2747.22	1	3850.0%	5	K.TNHIGHTGYLNTVTVSPDGSLCASGGK.D

5NTD_MOUSE

99.6%

1.4%

576

63864

6.7

(Q61503) 5'-nucleotidase precursor (EC 3.1.3.5) (Ecto-5'-nucleotidase) (5'-NT) (CD73 antigen)

	TK090902_P14_mitoch_2D_step09.2049.2049.1	1.3138	0.1434	982.89	11	4290.0%	2	K.AFEHSVHR.Y

HA10_MOUSE

99.6%

322

36966

5.3

(P01898) H-2 class I histocompatibility antigen, Q10 alpha chain precursor

	TK090902_P14_mitoch_2D_step13.1580.1580.2	3.0636	0.5771	1744.86	1	5330.0%	1	K.THVTHHPGSEGDVTLR.C

O70304

99.6%

1012

112385

6.1

(O70304) Integrin alpha8 (Fragment)

*	TK090902_P14_mitoch_2D_step07.3184.3184.3	1.1511	0.0676	3261.62	11	1500.0%	1	R.FGSSVAHLGDLNQDGYNDIAIGVPFAGKDQR.G
*	TK090902_P14_mitoch_2D_step13.3152.3152.2	3.1107	0.5966	2179.68	1	5000.0%	1	R.GVSHPPQIVLPIHNWEPEK.K

Q9D0E1

99.6%

729

77649

8.6

(Q9D0E1) 2610023M21Rik protein

*	TK090902_P14_mitoch_2D_step15.3054.3054.3	4.678	0.6622	3793.65	1	2290.0%	2	K.GDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLSK.G
*	TK090902_P14_mitoch_2D_step04.2011.2011.1	0.973	0.0589	1187.91	222	3330.0%	1	K.GEERPTQNEK.R

Q9DCI7

99.6%

335

36256

8.9

(Q9DCI7) 1200012F07Rik protein

	TK090902_P14_mitoch_2D_step01.1814.1814.1	2.072	0.1534	1128.94	1	6110.0%	1	R.FNIIQPGPIK.T
	TK090902_P14_mitoch_2D_step04.1653.1653.3	0.9661	0.0239	2611.34	23	980.0%	2	K.AMTTFLSTLGAQCVIASRNIDVLK.A
	TK090902_P14_mitoch_2D_step04.2890.2890.2	3.6624	0.6097	2266.7	1	5000.0%	1	K.VAGHPDVVINNAAGNFISPSER.L

Q8VCQ8

99.6%

530

60453

7.4

(Q8VCQ8) Similar to caldesmon 1

*	TK090902_P14_mitoch_2D_step07.2561.2561.2	3.7179	0.645	2024.97	1	5260.0%	3	K.ASKPMKPAASDLPVPAEGVR.N
	TK090902_P14_mitoch_2D_step14.1308.1308.1	1.7708	0.1931	1528.81	2	4580.0%	1	K.QQEAALELEELKK.K

ALBU_MOUSE

99.6%

104

800

39.5%

608

68693

6.1

(P07724) Serum albumin precursor

*	TK090902_P14_mitoch_2D_step13.4193.4193.3	2.2863	0.3721	4418.21	1	1790.0%	2	R.HPYFYAPELLYYAEQYNEILTQCCAEADKESCLTPK.L
	TK090902_P14_mitoch_2D_step03.2085.2085.1	1.6355	0.224	1077.89	11	5710.0%	2	R.NECFLQHK.D
*	TK090902_P14_mitoch_2D_step05.2960.2960.3	1.6016	0.1833	1887.96	10	2330.0%	1	K.DTCFSTEGPNLVTRCK.D
*	TK090902_P14_mitoch_2D_step03.2201.2201.2	2.7612	0.253	1378.37	1	6500.0%	2	K.LQTCCDKPLLK.K
*	TK090902_P14_mitoch_2D_step01.0518.0518.1	1.8001	0.3711	1598.85	1	4230.0%	3	K.DTCFSTEGPNLVTR.C
*	TK090902_P14_mitoch_2D_step01.2153.2153.1	1.8374	0.3104	1151.84	1	5000.0%	3	K.LVQEVTDFAK.T
*	TK090902_P14_mitoch_2D_step03.2232.2232.1	1.463	0.056	900.46	3	6670.0%	5	R.VCLLHEK.T
*	TK090902_P14_mitoch_2D_step13.4528.4528.1	1.022	0.0272	1458.51	7	2270.0%	7	R.RHPDYSVSLLLR.L
*	TK090902_P14_mitoch_2D_step08.3316.3316.2	2.4618	0.4854	1905.38	1	4670.0%	6	K.ENPTTFMGHYLHEVAR.R
*	TK090902_P14_mitoch_2D_step02.2717.2717.2	2.2837	0.4822	2155.26	1	3530.0%	2	K.AETFTFHSDICTLPEKEK.Q
	TK090902_P14_mitoch_2D_step01.0365.0365.1	2.2199	0.2784	1019.77	1	5620.0%	9	K.SLHTLFGDK.L
*	TK090902_P14_mitoch_2D_step07.4603.4603.3	6.7587	0.6873	3630.65	1	3550.0%	13	K.KAHCLSEVEHDTMPADLPAIAADFVEDQEVCK.N
*	TK090902_P14_mitoch_2D_step10.3020.3020.2	2.9677	0.4916	1885.89	1	4670.0%	13	R.RPCFSALTVDETYVPK.E
*	TK090902_P14_mitoch_2D_step05.2731.2731.1	1.6743	0.1686	1103.07	2	5000.0%	7	K.KQTALAELVK.H
*	TK090902_P14_mitoch_2D_step03.1864.1864.1	1.294	0.0753	981.93	23	4290.0%	1	K.KYEATLEK.C
*	TK090902_P14_mitoch_2D_step01.1061.1061.1	1.5854	0.3517	1442.14	1	4230.0%	10	K.APQVSTPTLVEAAR.N
*	TK090902_P14_mitoch_2D_step04.1746.1746.1	1.5115	0.3084	999.98	1	4380.0%	7	K.TPVSEHVTK.C
*	TK090902_P14_mitoch_2D_step01.0949.0949.1	1.2595	0.1849	957.38	15	5000.0%	4	K.LCAIPNLR.E

Q9DBP9

99.6%

949

105833

6.6

(Q9DBP9) 1200017E13Rik protein

*	TK090902_P14_mitoch_2D_step12.2532.2532.1	2.4147	0.4878	1282.92	1	6360.0%	4	K.ILCFHGPPGVGK.T
*	TK090902_P14_mitoch_2D_step15.2802.2802.3	1.6423	0.1185	2766.88	47	1700.0%	1	R.KDYSDLAPFITEGLEVHFVEHYR.D

LGMN_MOUSE

99.6%

435

49373

6.4

(O89017) Legumain precursor (EC 3.4.22.34) (Asparaginyl endopeptidase) (Protease, cysteine 1)

	TK090902_P14_mitoch_2D_step13.2044.2044.2	1.2076	0.1781	1722.9	1	5380.0%	3	R.HQADACHAYQIIHR.N
*	TK090902_P14_mitoch_2D_step15.3938.3938.2	0.9138	0.0014	2974.83	76	1600.0%	1	R.DHVFIYFTDHGATGILVFPNDDLHVK.D

G3BP_MOUSE

99.6%

465

51829

5.6

(P97855) Ras-GTPase-activating protein binding protein 1 (GAP SH3-domain binding protein 1) (G3BP-1)

*	TK090902_P14_mitoch_2D_step14.1455.1455.3	1.3776	0.108	2598.18	7	1820.0%	1	K.VPASQPRPESKPDSQIPPQRPQR.D
	TK090902_P14_mitoch_2D_step04.1794.1794.1	0.8297	0.0364	697.55	20	4000.0%	1	R.GPRPIR.E
	TK090902_P14_mitoch_2D_step11.2985.2985.2	3.0407	0.4283	2085.95	1	4120.0%	2	R.HPDSHQLFIGNLPHEVDK.S
	TK090902_P14_mitoch_2D_step13.2733.2733.2	3.2588	0.5682	2541.51	1	3810.0%	1	R.HPDSHQLFIGNLPHEVDKSELK.D

Q9D0F3

99.6%

19.0%

517

57789

6.3

(Q9D0F3) 2610020P13Rik protein

*	TK090902_P14_mitoch_2D_step11.3754.3754.2	0.798	0.1457	2345.74	14	1320.0%	1	K.ITYYQKTLTVMINNGFTPDK.N
*	TK090902_P14_mitoch_2D_step09.2204.2204.1	1.5801	0.361	863.58	1	5830.0%	4	K.EHLHVVK.R
*	TK090902_P14_mitoch_2D_step07.3231.3231.2	1.6226	0.3174	2617.35	1	2610.0%	2	R.LVSGIQHPGSAGVYETTQHFMDIK.E
	TK090902_P14_mitoch_2D_step04.1730.1730.1	0.8785	0.0533	923.96	2	5000.0%	1	K.NSMSETVR.L
*	TK090902_P14_mitoch_2D_step03.4931.4931.1	0.8595	0.0399	1285.97	11	3500.0%	1	R.YVSSLTEEISR.R
*	TK090902_P14_mitoch_2D_step11.3302.3302.2	2.3989	0.538	2944.99	1	2960.0%	7	K.GPHLVQSDGTVPFWAHAGNAIPSADQIR.I

COXE_MOUSE

99.6%

61.3%

111

12352

10.0

(P43024) Cytochrome c oxidase polypeptide VIa-liver, mitochondrial precursor (EC 1.9.3.1)

	TK090902_P14_mitoch_2D_step14.3216.3216.3	2.5544	0.3793	3321.46	1	2050.0%	5	R.TKPFPWGDGNHTLFHNPHVNPLPTGYEDE.-
	TK090902_P14_mitoch_2D_step15.1717.1717.3	0.933	0.2319	2482.12	50	910.0%	1	K.ALTYFVALPGVGVSMLNVFLKSR.H
	TK090902_P14_mitoch_2D_step15.2606.2606.2	1.4531	0.3764	2260.3	1	3240.0%	4	K.SRHEEHERPPFVAYPHLR.I
	TK090902_P14_mitoch_2D_step13.2542.2542.2	1.7593	0.1981	2016.78	1	3330.0%	4	R.HEEHERPPFVAYPHLR.I

PDX3_MOUSE

99.6%

33.5%

257

28127

7.6

(P20108) Thioredoxin-dependent peroxide reductase, mitochondrial precursor (EC 1.11.1.-) (Perioredoxin 3) (Antioxidant protein 1) (AOP-1) (MER5 protein) (PRX III)

*	TK090902_P14_mitoch_2D_step05.3549.3549.2	1.6706	0.3335	1915.62	1	3820.0%	3	R.KNGGLGHMNITLLSDITK.Q
	TK090902_P14_mitoch_2D_step04.2677.2677.1	1.7941	0.2287	1209.05	6	4000.0%	1	K.HLSVNDLPVGR.S
*	TK090902_P14_mitoch_2D_step05.3179.3179.3	5.0385	0.5423	3417.74	1	3250.0%	4	K.AFQFVETHGEVCPANWTPESPTIKPSPTASK.E
*	TK090902_P14_mitoch_2D_step01.3015.3015.1	1.4543	0.1915	1273.99	6	3180.0%	1	R.GLFIIDPNGVVK.H
*	TK090902_P14_mitoch_2D_step02.3757.3757.1	1.0626	0.3007	1478.99	4	1920.0%	1	R.DYGVLLESAGIALR.G

Q8VCW8

99.6%

615

67951

8.2

(Q8VCW8) Similar to hypothetical protein FLJ20920

*	TK090902_P14_mitoch_2D_step07.2157.2157.2	1.9446	0.4135	1822.52	1	4670.0%	4	K.HPQVQEAQVVGVKDER.M
*	TK090902_P14_mitoch_2D_step07.2188.2188.1	1.3401	0.0894	1313.99	20	3890.0%	1	K.LREQMEQHLK.L
*	TK090902_P14_mitoch_2D_step07.2803.2803.2	3.6535	0.5785	2065.72	1	5000.0%	7	K.GATLSHHNIVNNSMLIGQR.L
*	TK090902_P14_mitoch_2D_step01.1862.1862.1	1.6598	0.2869	1436.08	2	3930.0%	1	R.GGVIAGSPAPPELIR.A
*	TK090902_P14_mitoch_2D_step05.2164.2164.1	2.7952	0.5168	1419.85	1	6250.0%	4	K.HPQVQEAQVVGVK.D

SPCA_MOUSE

99.6%

11.2%

2415

279993

5.0

(P08032) Spectrin alpha chain, erythrocyte (Erythroid alpha-spectrin)

*	TK090902_P14_mitoch_2D_step07.2280.2280.2	0.99	0.1524	2218.89	26	2000.0%	1	K.EPIVDNKNYGADEEAAGALLK.K
*	TK090902_P14_mitoch_2D_step12.2827.2827.3	0.7937	0.1316	3111.57	1	1200.0%	1	K.HQAFENEVNGRAEQVDGVINLGNSLIER.R
*	TK090902_P14_mitoch_2D_step12.3180.3180.2	0.9193	0.1294	2503.75	6	2250.0%	1	K.RLADEQYQLLSSAHAVEMFHR.E
*	TK090902_P14_mitoch_2D_step05.2796.2796.1	1.6075	0.2409	1497.82	1	5420.0%	2	K.DLVSSEALFHNHK.R
*	TK090902_P14_mitoch_2D_step09.2873.2873.2	2.206	0.3171	1736.68	1	5360.0%	4	R.KLAPDELPGFPQHQR.E
*	TK090902_P14_mitoch_2D_step09.4121.4121.3	0.7248	0.04	2908.52	27	800.0%	1	K.NFEMCQEFEQNASAFLQWIQETR.A
*	TK090902_P14_mitoch_2D_step11.3717.3717.2	2.7701	0.4301	1977.12	1	5940.0%	5	K.KHEAFLVDLNAFENSIK.A
*	TK090902_P14_mitoch_2D_step06.2482.2482.1	2.5533	0.225	1582.7	1	4620.0%	4	R.FENVQSLAAAHHEK.L
*	TK090902_P14_mitoch_2D_step12.2620.2620.1	2.337	0.3935	1438.99	1	5910.0%	2	K.KHQLLEAEMLAR.E
*	TK090902_P14_mitoch_2D_step05.3360.3360.2	1.364	0.1791	2347.38	1	3680.0%	1	R.LADEQYQLLSSAHAVEMFHR.E
*	TK090902_P14_mitoch_2D_step12.3424.3424.2	0.9398	0.0080	1681.36	111	2670.0%	1	K.TSDDIESAFQALAEGK.A
*	TK090902_P14_mitoch_2D_step05.3037.3037.2	4.2442	0.6604	1588.16	1	8460.0%	1	R.HEVILADIASHEPR.I
	TK090902_P14_mitoch_2D_step03.1841.1841.1	1.0571	0.0061	725.89	13	6000.0%	1	R.TEVLHK.K
	TK090902_P14_mitoch_2D_step05.2209.2209.1	1.8149	0.2723	1467.78	1	5000.0%	1	R.MQHNLEQQIQAK.D
*	TK090902_P14_mitoch_2D_step01.2137.2137.1	1.1638	0.0941	1133.28	39	3750.0%	1	K.LDLVSNWER.I
*	TK090902_P14_mitoch_2D_step11.4730.4730.3	1.21	0.1609	4130.28	62	860.0%	1	K.IEDLGDSMEEALILDIKYSTIGLAQQWDQLHQLGMR.M
*	TK090902_P14_mitoch_2D_step09.2575.2575.2	2.8181	0.5218	1539.28	1	6250.0%	1	K.KHEALENDFAVHK.N

ETFA_HUMAN

99.6%

126

17.1%

333

35080

8.4

(P13804) Electron transfer flavoprotein alpha-subunit, mitochondrial precursor (Alpha-ETF)

*	TK090902_P14_mitoch_2D_step09.4227.4227.2	4.3645	0.6123	2354.8	1	5680.0%	11	K.IVAPELYIAVGISGAIQHLAGMK.D
*	TK090902_P14_mitoch_2D_step11.3623.3623.3	1.4466	4.0E-4	3581.63	121	1140.0%	1	R.AASLLRFQSTLVIAEHANDSLAPITLNTITAATR.L

HS7C_MOUSE

99.6%

646

70871

5.5

(P08109) Heat shock cognate 71 kDa protein

	TK090902_P14_mitoch_2D_step05.2712.2712.1	1.8795	0.477	1484.91	1	4230.0%	6	K.SQIHDIVLVGGSTR.I
	TK090902_P14_mitoch_2D_step14.0753.0753.2	0.5448	0.0017	989.98	48	2140.0%	1	R.LSKEDIER.M
	TK090902_P14_mitoch_2D_step04.3131.3131.1	1.6497	0.2692	1237.12	2	3890.0%	1	R.MVNHFIAEFK.R
	TK090902_P14_mitoch_2D_step11.3265.3265.2	2.3204	0.3146	1657.2	2	4230.0%	5	K.HWPFMVVNDAGRPK.V
	TK090902_P14_mitoch_2D_step15.4550.4550.2	2.0925	0.4874	2915.53	1	2500.0%	1	R.NVLIFDLGGGTFDVSILTIEDGIFEVK.S

HMG1_MOUSE

99.6%

13.6%

214

24763

5.7

(P07155) High mobility group protein 1 (HMG-1) (Amphoterin) (Heparin-binding protein p30)

	TK090902_P14_mitoch_2D_step08.2638.2638.2	2.4529	0.539	1523.01	1	5710.0%	1	K.IKGEHPGLSIGDVAK.K
	TK090902_P14_mitoch_2D_step13.1349.1349.2	0.9762	0.1202	1595.44	90	2690.0%	1	K.KHPDASVNFSEFSK.K

Q9DBA2

99.6%

153

15793

4.8

(Q9DBA2) 1500000I11Rik protein

	TK090902_P14_mitoch_2D_step13.5028.5028.3	3.0378	0.5685	4172.36	1	1790.0%	4	K.QVDVPTLTGAFGILASHVPTLQVLRPGLVVVHTEDGTTTK.Y

Q9CQF9

99.6%

505

56495

6.9

(Q9CQF9) 1200015P13Rik protein (RIKEN cDNA 1200015P13 gene)

*	TK090902_P14_mitoch_2D_step08.2782.2782.1	0.9135	0.0208	1405.65	312	1820.0%	1	K.IDVFEREEVGGR.L
*	TK090902_P14_mitoch_2D_step11.2997.2997.2	4.7792	0.6611	2306.32	1	6250.0%	4	K.VQGHDYEAGGSVIHPLNLHMK.R

Q8VDD5

99.6%

1960

226355

5.7

(Q8VDD5) Nonmuscle heavy chain myosin II-A

	TK090902_P14_mitoch_2D_step05.2785.2785.1	1.5552	0.2621	1538.76	1	4170.0%	2	K.DKADFCIIHYAGK.V
	TK090902_P14_mitoch_2D_step03.2414.2414.1	1.2485	0.0030	878.81	123	5830.0%	2	K.KLEMDLK.D
	TK090902_P14_mitoch_2D_step05.3396.3396.1	1.5124	0.3461	1572.71	18	2690.0%	2	K.VSHLLGINVTDFTR.G
*	TK090902_P14_mitoch_2D_step04.2978.2978.1	0.9392	0.1361	1161.09	1	3890.0%	1	R.RGDLPFVVTR.R
	TK090902_P14_mitoch_2D_step07.2631.2631.1	2.5222	0.3093	1587.94	1	5830.0%	3	K.NKHEAMITDLEER.L
	TK090902_P14_mitoch_2D_step04.2930.2930.2	3.034	0.4777	1771.56	1	6920.0%	1	K.KQELEEICHDLEAR.V
	TK090902_P14_mitoch_2D_step04.2570.2570.1	2.8553	0.2291	1414.98	1	5910.0%	2	K.KVEAQLQELQVK.F

COF1_MOUSE

99.6%

488

166

18560

8.1

(P18760) Cofilin, non-muscle isoform

*	TK090902_P14_mitoch_2D_step09.4681.4681.2	3.461	0.5993	2020.69	1	5310.0%	22	K.KEDLVFIFWAPENAPLK.S
	TK090902_P14_mitoch_2D_step07.2036.2036.1	1.781	0.1434	659.9	1	8000.0%	2	K.KLTGIK.H

ATPA_MOUSE

99.6%

731

23.0%

553

59753

9.2

(Q03265) ATP synthase alpha chain, mitochondrial precursor (EC 3.6.3.14)

*	TK090902_P14_mitoch_2D_step09.3832.3832.3	3.5303	0.5953	2414.39	1	3500.0%	4	K.FENAFLSHVISQHQSLLGNIR.S
	TK090902_P14_mitoch_2D_step10.2856.2856.2	3.0032	0.5326	1441.89	1	6920.0%	5	K.GIRPAINVGLSVSR.V
	TK090902_P14_mitoch_2D_step08.1855.1855.1	1.1902	0.0199	583.34	4	6250.0%	6	R.VHGLR.N
	TK090902_P14_mitoch_2D_step01.1073.1073.1	1.091	0.025	1002.94	2	6110.0%	5	R.VLSIGDGIAR.V
	TK090902_P14_mitoch_2D_step03.3031.3031.1	1.4622	0.0788	1330.01	1	4500.0%	2	K.LYCIYVAIGQK.R
	TK090902_P14_mitoch_2D_step02.2707.2707.1	1.6783	0.3154	1317.06	4	4550.0%	1	K.TSIAIDTIINQK.R
	TK090902_P14_mitoch_2D_step01.0276.0276.1	1.0366	0.0811	1174.98	9	3640.0%	9	R.VVDALGNAIDGK.G
	TK090902_P14_mitoch_2D_step05.3851.3851.2	2.2327	0.3928	2313.55	1	4000.0%	2	K.QGQYSPMAIEEQVAVIYAGVR.G
	TK090902_P14_mitoch_2D_step01.1585.1585.1	1.0743	0.1365	1028.63	33	2780.0%	1	K.AVDSLVPIGR.G
	TK090902_P14_mitoch_2D_step01.2660.2660.1	1.7364	0.2872	1289.7	1	5000.0%	3	K.HALIIYDDLSK.Q

G6P1_MOUSE

99.6%

514

59131

6.5

(Q00612) Glucose-6-phosphate 1-dehydrogenase X (EC 1.1.1.49) (G6PD)

	TK090902_P14_mitoch_2D_step14.1430.1430.1	0.2368	0.0105	781.79	6	1000.0%	1	K.WVNPHK.L
*	TK090902_P14_mitoch_2D_step14.2021.2021.2	3.1978	0.5324	1960.48	1	5940.0%	1	K.HLNSHMNALHQGMQANR.L
	TK090902_P14_mitoch_2D_step10.2351.2351.3	1.5756	0.1348	2837.6	15	1960.0%	1	K.MMTKKPGMFFNPEESELDLTYGNR.Y

Q96HR0

99.6%

44.9%

254

27873

6.8

(Q96HR0) Similar to RIKEN cDNA 0610025L15 gene

	TK090902_P14_mitoch_2D_step03.3878.3878.3	1.0876	0.0535	4363.16	73	900.0%	1	K.TLYHSVHEKIFTLPGDCLIYPAHDYHGFTVSTVEEER.T
*	TK090902_P14_mitoch_2D_step10.2641.2641.2	0.8575	0.1835	2984.55	79	960.0%	1	R.GGSGAPILLRQMFEPVSCTFTYLLGDR.E
	TK090902_P14_mitoch_2D_step14.2527.2527.2	3.3419	8.0E-4	2350.46	1	4000.0%	1	R.LLYAVNTHCHADHITGSGLLR.S
	TK090902_P14_mitoch_2D_step08.3003.3003.3	1.1551	0.0963	3097.6	103	1340.0%	1	R.SLLPGCQSVISRLSGAQADLHIEDGDSIR.F

CATD_MOUSE

99.6%

410

44954

7.1

(P18242) Cathepsin D precursor (EC 3.4.23.5)

*	TK090902_P14_mitoch_2D_step14.4673.4673.3	1.5328	0.0868	4582.39	1	1220.0%	2	K.VSQGGKTICLSGFMGMDIPPPSGPLWILGDVFIGSYYTVFDR.D
*	TK090902_P14_mitoch_2D_step09.3393.3393.1	2.1185	0.4471	1394.99	1	5500.0%	7	K.ILDIACWVHHK.Y
*	TK090902_P14_mitoch_2D_step08.1630.1630.3	0.9612	0.047	1615.39	110	1250.0%	1	K.YYHGELSYLNVTR.K

KPY2_MOUSE

99.6%

12.5%

530

57756

7.5

(P52480) Pyruvate kinase, M2 isozyme (EC 2.7.1.40)

	TK090902_P14_mitoch_2D_step09.2649.2649.2	3.1279	0.5766	1885.83	1	6000.0%	3	R.LNFSHGTHEYHAETIK.N
	TK090902_P14_mitoch_2D_step03.2925.2925.3	1.2679	0.1668	2650.23	23	1380.0%	1	K.ITLDNAYMEKCDENILWLDYK.N
	TK090902_P14_mitoch_2D_step11.3267.3267.2	0.9883	0.1249	2780.9	2	2270.0%	1	R.MQHLIAREAEAAIYHLQLFEELR.R
	TK090902_P14_mitoch_2D_step12.1812.1812.1	0.6859	0.0614	727.83	30	4000.0%	1	K.ARGFFK.K

CA14_MOUSE

99.6%

9.5%

1669

160680

8.2

(P02463) Collagen alpha 1(IV) chain precursor

*	TK090902_P14_mitoch_2D_step04.2955.2955.1	1.014	0.0464	1296.9	365	2690.0%	1	R.AAAKGDCGGSGCGK.C
*	TK090902_P14_mitoch_2D_step03.3935.3935.3	0.8929	0.0405	4185.08	1	930.0%	1	K.GVDGLPGEIGRPGSPGRPGFNGLPGNPGPQGQKGEPGIGLPGLK.G
	TK090902_P14_mitoch_2D_step11.1612.1612.1	0.2806	0.0	601.03	5	1250.0%	1	R.THVSR.C
	TK090902_P14_mitoch_2D_step04.2083.2083.1	2.011	0.4343	1444.79	1	5380.0%	1	R.AHGQDLGTAGSCLR.K
*	TK090902_P14_mitoch_2D_step13.3020.3020.3	1.8302	0.1916	3357.66	8	1490.0%	1	R.GDIGPPGPPGVGPIGPVGEKGQAGFPGGPGSPGLPGPK.G
*	TK090902_P14_mitoch_2D_step04.3042.3042.3	1.2382	0.037	3759.72	57	930.0%	1	R.GDPGPPGVQGPAGPPGVPGIGPPGAMGPPGGEGPPGSSGPPGIK.G

CA26_MOUSE

99.6%

1029

109812

6.3

(Q02788) Collagen alpha 2(VI) chain precursor

	TK090902_P14_mitoch_2D_step11.2445.2445.1	0.9498	4.0E-4	538.95	28	3000.0%	1	K.GGPGPR.G
	TK090902_P14_mitoch_2D_step11.1796.1796.1	0.7397	0.1039	927.99	9	3120.0%	1	K.GDRGLPGPR.G
*	TK090902_P14_mitoch_2D_step11.3853.3853.2	3.6354	0.4931	2473.21	1	4320.0%	3	R.ATYLNSFSHVGTGIVHAINNVVR.G

STAU_MOUSE

99.6%

487

53925

9.5

(Q9Z108) Double-stranded RNA-binding protein Staufen homolog

*	TK090902_P14_mitoch_2D_step13.1565.1565.1	1.9828	0.431	1345.13	1	5830.0%	1	K.SNISSGHVPHGPR.T
	TK090902_P14_mitoch_2D_step06.2013.2013.1	0.9562	0.1053	1189.9	103	3000.0%	1	K.DFTRAAPNPAK.A

PDA3_MOUSE

99.6%

108

504

56621

6.4

(P27773) Protein disulfide isomerase A3 precursor (EC 5.3.4.1) (Disulfide isomerase ER-60) (ERp60) (58 kDa microsomal protein) (p58) (ERp57)

	TK090902_P14_mitoch_2D_step03.1940.1940.1	1.2743	0.0862	787.68	4	5830.0%	1	K.FLDAGHK.L
	TK090902_P14_mitoch_2D_step05.2388.2388.1	1.5043	0.1187	1169.67	6	4500.0%	1	R.TADGIVSHLKK.Q
*	TK090902_P14_mitoch_2D_step05.3444.3444.2	3.7051	0.5708	2283.0	1	5000.0%	2	K.KFIQDSIFGLCPHMTEDNK.D
	TK090902_P14_mitoch_2D_step05.1720.1720.1	1.0082	0.0211	587.49	2	7500.0%	5	K.KLTPK.K
	TK090902_P14_mitoch_2D_step03.2302.2302.1	1.485	0.2914	1041.44	8	4440.0%	2	R.TADGIVSHLK.K
	TK090902_P14_mitoch_2D_step01.2610.2610.1	1.2227	0.1266	1343.92	6	3180.0%	3	K.GFPTIYFSPANK.K
	TK090902_P14_mitoch_2D_step07.2195.2195.1	1.9733	0.0823	918.3	2	6430.0%	4	K.KFLDAGHK.L
	TK090902_P14_mitoch_2D_step04.2219.2219.2	3.211	0.5024	1350.08	1	6360.0%	1	K.RLAPEYEAAATR.L
*	TK090902_P14_mitoch_2D_step01.2475.2475.1	1.1556	0.0754	1397.47	9	3640.0%	1	R.DLFSDGHSEFLK.A
*	TK090902_P14_mitoch_2D_step05.3184.3184.3	1.4975	0.0456	2975.8	4	1770.0%	1	R.ELNDFISYLQREATNPPIIQEEKPK.K
	TK090902_P14_mitoch_2D_step09.2193.2193.1	2.2236	0.2643	1124.87	1	7000.0%	3	K.KQAGPASVPLR.T
*	TK090902_P14_mitoch_2D_step04.2871.2871.2	1.5384	0.2289	1261.3	1	6000.0%	2	R.FAHTNIESLVK.E

IQG1_MOUSE

99.6%

1657

188755

6.5

(Q9JKF1) Ras GTPase-activating-like protein IQGAP1

	TK090902_P14_mitoch_2D_step03.2144.2144.1	1.3276	0.0199	937.18	32	5710.0%	1	K.QDKMTNAK.N
*	TK090902_P14_mitoch_2D_step02.4241.4241.2	0.8596	0.1513	3166.4	2	1670.0%	2	K.NPNAMLVNLEEGLAPTYQDVLYQAKQDK.M
*	TK090902_P14_mitoch_2D_step12.2013.2013.2	1.275	0.0762	1539.77	1	4580.0%	1	R.LAYLHSHKDEVVK.I

UCP1_MOUSE

99.6%

306

33117

9.2

(P12242) Mitochondrial brown fat uncoupling protein 1 (UCP 1) (Thermogenin)

*	TK090902_P14_mitoch_2D_step13.1882.1882.2	3.862	0.5259	1504.76	1	6670.0%	2	R.MQAQSHLHGIKPR.Y

Q9QXT0

99.6%

182

20767

5.1

(Q9QXT0) Putative secreted protein ZSIG9 (5330432A10RIK protein) (Transmembrane protein 4)

*	TK090902_P14_mitoch_2D_step09.2247.2247.1	1.9991	0.3818	1396.73	3	4000.0%	6	K.RTDLCDHALHR.S
*	TK090902_P14_mitoch_2D_step04.2098.2098.1	1.3544	0.2834	1239.06	1	4440.0%	3	R.TDLCDHALHR.S

CRP1_MOUSE

99.6%

47.4%

8419

8.6

(P04006) Cysteine-rich protein 1 (Cysteine-rich intestinal protein) (CRIP)

	TK090902_P14_mitoch_2D_step09.2384.2384.1	1.2705	0.1131	1112.27	3	5710.0%	2	K.DWHRPCLK.C
*	TK090902_P14_mitoch_2D_step13.2478.2478.2	3.1409	0.5768	3137.9	1	2410.0%	2	K.TLTSGGHAEHEGKPYCNHPCYSAMFGPK.G

G3P_MOUSE

99.6%

118

20.2%

332

35679

8.2

(P16858) Glyceraldehyde 3-phosphate dehydrogenase (EC 1.2.1.12) (GAPDH)

	TK090902_P14_mitoch_2D_step10.3312.3312.2	2.8491	0.517	2372.14	1	3810.0%	6	K.RVIISAPSADAPMFVMGVNHEK.Y
*	TK090902_P14_mitoch_2D_step09.4037.4037.2	0.9711	0.0343	2291.7	94	1750.0%	1	K.WGEAGAEYVVESTGVFTTMEK.A
	TK090902_P14_mitoch_2D_step07.4115.4115.2	3.943	0.6529	2598.57	1	3910.0%	9	K.VIHDNFGIVEGLMTTVHAITATQK.T

ZYX_MOUSE

99.6%

564

60790

6.9

(Q62523) Zyxin

	TK090902_P14_mitoch_2D_step13.1985.1985.1	1.913	0.443	1182.15	1	5000.0%	1	K.KFAPVVAPKPK.V

Q9DBG2

99.6%

541

58409

7.7

(Q9DBG2) 1300012P06Rik protein

*	TK090902_P14_mitoch_2D_step07.2196.2196.1	2.1534	0.5101	981.18	1	7220.0%	5	R.HAALLGGGQR.R
*	TK090902_P14_mitoch_2D_step10.1881.1881.2	2.4085	0.5032	1168.25	1	7500.0%	4	K.THTTVSGVAHR.A

KCRU_MOUSE

99.6%

418

47004

8.2

(P30275) Creatine kinase, ubiquitous mitochondrial precursor (EC 2.7.3.2) (U-MtCK) (Mia-CK) (Acidic-type mitochondrial creatine kinase)

	TK090902_P14_mitoch_2D_step10.4219.4219.2	4.2698	0.5057	2465.85	1	5000.0%	1	K.SEVELVQLVIDGVNYLIDCER.R
*	TK090902_P14_mitoch_2D_step06.2444.2444.3	1.1174	0.0443	3616.42	13	1180.0%	1	R.LLSARPGLRLLALAGAGSLTAGILLRPESVGAAAAER.R

CRTC_MOUSE

99.6%

428

416

47995

4.5

(P14211) Calreticulin precursor (CRP55) (Calregulin) (HACBP) (ERp60)

	TK090902_P14_mitoch_2D_step06.3757.3757.3	2.0432	0.295	2860.92	1	2160.0%	1	R.CKDDEFTHLYTLIVRPDNTYEVK.I
*	TK090902_P14_mitoch_2D_step07.4127.4127.3	1.8982	0.2027	4142.35	1	1430.0%	4	K.GTWIHPEIDNPEYSPDANIYAYDSFAVLGLDLWQVK.S
	TK090902_P14_mitoch_2D_step01.0042.0042.2	1.5816	0.2319	2762.03	1	2610.0%	1	K.IDDPTDSKPEDWDKPEHIPDPDAK.K
	TK090902_P14_mitoch_2D_step13.2498.2498.1	2.2382	0.203	1150.23	1	6880.0%	5	K.KVHVIFNYK.G
	TK090902_P14_mitoch_2D_step07.3087.3087.1	1.3776	0.1379	1222.47	1	5000.0%	18	K.GQTLVVQFTVK.H
	TK090902_P14_mitoch_2D_step08.2788.2788.1	2.562	0.4174	1021.13	1	7140.0%	6	K.VHVIFNYK.G

Q921P5

99.6%

661

72326

7.4

(Q921P5) Unknown (Protein for IMAGE:3981915) (Fragment)

	TK090902_P14_mitoch_2D_step05.2929.2929.2	2.2625	0.5425	2953.34	1	2410.0%	2	K.HVNGQDQIVPGLYACGEAACASVHGANR.L
	TK090902_P14_mitoch_2D_step11.2959.2959.2	2.6648	0.3216	2170.97	1	4410.0%	8	K.DHVYLQLHHLPPEQLATR.L
*	TK090902_P14_mitoch_2D_step14.2743.2743.3	1.3404	0.0318	3289.93	1	1950.0%	1	K.ASAKVSDAISTQYPVVDHEFDAVVVGAGGAGLR.A
	TK090902_P14_mitoch_2D_step13.2802.2802.1	1.9024	0.2885	1357.0	1	5000.0%	3	R.TGHSLLHTLYGR.S
	TK090902_P14_mitoch_2D_step14.2499.2499.2	3.7308	0.5999	2800.09	1	4130.0%	3	R.GCGPEKDHVYLQLHHLPPEQLATR.L

Q9D6R2

99.6%

366

39639

6.7

(Q9D6R2) 1500012E04Rik protein

	TK090902_P14_mitoch_2D_step09.3221.3221.1	1.0617	0.0276	1594.73	1	3210.0%	5	K.TPIAAGHPSMNLLLR.K
	TK090902_P14_mitoch_2D_step02.2409.2409.2	0.8836	0.079	1988.09	27	1670.0%	1	K.GPLKTPIAAGHPSMNLLLR.K
*	TK090902_P14_mitoch_2D_step01.1746.1746.1	0.939	0.0779	974.24	67	4290.0%	1	K.WMIPPEAK.E
	TK090902_P14_mitoch_2D_step05.2335.2335.2	1.066	0.1816	1740.25	1	3080.0%	1	R.IAEFAFEYARNNHR.S
	TK090902_P14_mitoch_2D_step08.2758.2758.1	2.211	0.3589	1129.13	1	6110.0%	7	R.HMGLFDHAAK.I

G25B_HUMAN

99.6%

110

191

21311

6.0

(P21181) G25K GTP-binding protein, brain isoform (GP) (CDC42 homolog) (P21181) G25K GTP-binding protein, brain isoform (GP) (CDC42 homolog)

	TK090902_P14_mitoch_2D_step12.2473.2473.1	0.6157	0.0848	1581.94	5	2690.0%	1	K.QKPITPETAEKLAR.D
	TK090902_P14_mitoch_2D_step08.2618.2618.1	2.4283	0.5294	1406.03	1	5500.0%	10	K.WVPEITHHCPK.T

O08794

99.6%

171

18.3%

966

109404

6.2

(O08794) Alpha glucosidase II, alpha subunit

*	TK090902_P14_mitoch_2D_step10.4729.4729.3	2.395	0.4362	3901.79	1	2210.0%	8	K.THSDSKPYGPTSVGLDFSLPGMEHVYGIPEHADSLR.L
	TK090902_P14_mitoch_2D_step10.1885.1885.1	1.4521	0.1363	978.27	3	5620.0%	1	R.AHAHLDTGR.R
	TK090902_P14_mitoch_2D_step15.3643.3643.3	3.3215	0.4754	2394.09	1	4120.0%	1	K.HHGPQTLYLPVTLSSIPVFQR.G
	TK090902_P14_mitoch_2D_step11.2802.2802.1	1.3313	0.062	1233.16	4	4500.0%	4	R.KLVAIVDPHIK.V
*	TK090902_P14_mitoch_2D_step10.3835.3835.2	4.3944	0.6771	2404.64	1	5250.0%	4	R.DIHNIYGLYVHMATADGLIQR.S
*	TK090902_P14_mitoch_2D_step04.2921.2921.2	2.581	0.4201	1683.67	1	5620.0%	1	R.VVIMGAGKPAAVVLQTK.G
*	TK090902_P14_mitoch_2D_step05.2284.2284.1	2.0423	0.2235	1328.0	2	5000.0%	2	K.DAVHYGGWEHR.D
	TK090902_P14_mitoch_2D_step13.1163.1163.3	1.3199	0.0362	2641.4	41	1500.0%	1	K.NPEPELLVRWYQMGAYQPFFR.A
*	TK090902_P14_mitoch_2D_step13.2214.2214.3	1.659	0.0056	1775.64	2	2970.0%	1	R.RFSFSGSTLVSSSADPK.G
	TK090902_P14_mitoch_2D_step01.1333.1333.1	0.8815	0.0148	1106.19	1	3890.0%	1	K.LVAIVDPHIK.V
*	TK090902_P14_mitoch_2D_step04.2105.2105.1	0.9176	0.0327	1350.9	418	2080.0%	1	R.VPDVLVADPPTAR.L

Q91W90

99.6%

22.3%

323

36115

5.3

(Q91W90) Similar to hypothetical protein MGC3178

*	TK090902_P14_mitoch_2D_step10.3139.3139.3	1.2462	0.0656	4361.85	1	1280.0%	1	R.DYVQSQQQGSEAAPETVEPSEAPVMAAEPTGDKGTVLALTEK.S
	TK090902_P14_mitoch_2D_step04.2077.2077.2	3.3011	0.6777	1991.63	1	5330.0%	3	K.VDCTQHYAVCSEHQVR.G
	TK090902_P14_mitoch_2D_step13.2414.2414.2	1.9268	0.2628	1558.55	1	4620.0%	2	K.SFEDTIAQGITFVK.F

PAGT_MOUSE

99.6%

559

64255

7.7

(O08912) Polypeptide N-acetylgalactosaminyltransferase (EC 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase) (UDP-GalNAc:polypeptide, N-acetylgalactosaminyltransferase) (GalNAc-T1) (ppGaNTase-T1)

*	TK090902_P14_mitoch_2D_step11.3423.3423.3	1.6708	0.3038	2994.81	1	2050.0%	3	R.GLPAGDVLELVQKPHEGPGEMGKPVVIPK.E
	TK090902_P14_mitoch_2D_step13.2189.2189.3	1.803	0.0682	2633.31	6	2500.0%	1	R.LAEVWMDEFKNFFYIISPGVTK.V
	TK090902_P14_mitoch_2D_step13.2970.2970.1	1.048	0.108	1496.03	87	2270.0%	1	R.DFLKRPLESYVK.K

KAD4_MOUSE

99.6%

223

25062

7.5

(Q9WUR9) Adenylate kinase isoenzyme 4, mitochondrial (EC 2.7.4.3) (ATP-AMP transphosphorylase)

*	TK090902_P14_mitoch_2D_step02.3585.3585.1	0.6759	0.0545	1538.86	1	2920.0%	1	R.YKDAAKPVIELYK.S
*	TK090902_P14_mitoch_2D_step12.2951.2951.2	3.5721	0.5426	1893.21	1	5620.0%	2	R.IAQNFGLQHLSSGHLLR.E

Q8R1S2

99.6%

549

60346

8.1

(Q8R1S2) Similar to aldehyde dehydrogenase 4 family, member A1 (Fragment)

*	TK090902_P14_mitoch_2D_step05.2661.2661.1	2.4806	0.4233	1390.99	1	6500.0%	3	R.KEWDLKPMADR.A
*	TK090902_P14_mitoch_2D_step05.2508.2508.1	1.5371	0.0867	1241.26	1	6110.0%	3	K.ETHKPLGDWR.Y
	TK090902_P14_mitoch_2D_step07.2448.2448.2	1.6819	0.1326	1686.59	1	4670.0%	3	R.ASGTNDKPGGPHYILR.W
*	TK090902_P14_mitoch_2D_step08.3210.3210.2	4.5053	0.6292	2177.6	1	5530.0%	5	K.NFHFVHSSADVDSVVSGTLR.S

Q8QZT1

99.6%

18.9%

424

44816

8.5

(Q8QZT1) Similar to acetyl-Co A acetyltransferase 1, mitochondrial

*	TK090902_P14_mitoch_2D_step04.1909.1909.1	1.2275	0.1391	841.69	3	5000.0%	1	K.GKPDVVVK.E
*	TK090902_P14_mitoch_2D_step05.1907.1907.1	2.5528	0.4516	1347.68	1	5910.0%	3	K.IHMGNCAENTAK.K
*	TK090902_P14_mitoch_2D_step09.2851.2851.2	4.183	0.625	1933.12	1	6320.0%	8	K.VNIHGGAVSLGHPIGMSGAR.I
*	TK090902_P14_mitoch_2D_step14.3644.3644.3	5.8523	0.6235	3321.57	1	2970.0%	3	R.IVVHMAHALKPGEFGLASICNGGGGASALLIEK.L
	TK090902_P14_mitoch_2D_step01.0124.0124.1	1.6253	0.0708	829.43	7	6670.0%	1	K.LEDLIVK.D

Q9CV45

99.6%

225

25522

5.3

(Q9CV45) 2310038O07Rik protein (Fragment)

	TK090902_P14_mitoch_2D_step12.2828.2828.2	4.4643	0.6406	1941.5	1	5590.0%	3	R.VALVTFNSAAHNKPSLIR.D

Q8R3B4

99.6%

1085

124966

7.0

(Q8R3B4) Similar to dysferlin (Fragment)

*	TK090902_P14_mitoch_2D_step07.3783.3783.2	1.6045	0.0278	2415.52	2	3160.0%	1	R.AMEELEDREGWEYASLIGWK.F
	TK090902_P14_mitoch_2D_step12.1872.1872.1	2.6292	0.2722	1401.85	2	6360.0%	4	K.ILHQHLGAPEER.L
	TK090902_P14_mitoch_2D_step13.1733.1733.1	1.4411	0.0732	943.81	1	5000.0%	1	K.EDIVPQLK.A
*	TK090902_P14_mitoch_2D_step06.4922.4922.3	0.9611	0.0043	4204.49	11	860.0%	1	R.ELPDSVPQECTVRIYIVQGLQLQPQDNNGLCDPYIK.I
*	TK090902_P14_mitoch_2D_step15.3111.3111.3	1.2642	0.089	3720.88	101	1290.0%	1	R.FKWVIIGLLLLLILLLFVAVLLYSLPNYLSMK.I
	TK090902_P14_mitoch_2D_step08.4076.4076.2	1.0592	0.222	1919.52	17	2330.0%	1	K.VFLPKEELYMPPLVIK.V

CAP1_MOUSE

99.6%

7.4%

474

51575

7.5

(P40124) Adenylyl cyclase-associated protein 1 (CAP 1)

	TK090902_P14_mitoch_2D_step13.3492.3492.2	0.9675	0.1156	2739.31	22	1670.0%	1	R.SALFAQINQGESITHALKHVSDDMK.T
	TK090902_P14_mitoch_2D_step04.3249.3249.2	1.8225	0.2601	1929.4	1	2940.0%	1	R.SALFAQINQGESITHALK.H
	TK090902_P14_mitoch_2D_step08.2260.2260.1	1.9412	0.3275	1125.02	1	5560.0%	3	K.HAEMVHTGLK.L

Q9D2Y1

99.6%

19.8%

288

31607

8.4

(Q9D2Y1) 9130022B02Rik protein

*	TK090902_P14_mitoch_2D_step13.3168.3168.3	1.1025	0.0905	3705.78	137	810.0%	1	R.HGLRPWCWSPCRSIQTLHVLSGDMSQLPAGVR.D
	TK090902_P14_mitoch_2D_step09.2901.2901.2	2.2969	0.5053	2772.86	1	3750.0%	6	K.CLHSVGQPLTGHGDPVGQWPCNPEK.T

Q9CT85

99.6%

10.5%

191

21723

8.4

(Q9CT85) 2310034D06Rik protein (Fragment)

	TK090902_P14_mitoch_2D_step06.2326.2326.1	1.9995	0.4423	1162.11	1	5560.0%	2	K.SMQNHAAVFR.V
	TK090902_P14_mitoch_2D_step11.2527.2527.1	1.5705	0.1483	1204.0	1	5560.0%	2	R.KHTLSYVDIK.T

GRN_MOUSE

99.6%

14.3%

589

63458

6.8

(P28798) Granulins precursor (Acrogranin) [Contains: Granulin 1; Granulin 2; Granulin 3; Granulin 4; Granulin 5; Granulin 6; Granulin 7]

*	TK090902_P14_mitoch_2D_step07.2292.2292.2	3.8975	0.6464	2618.84	1	4750.0%	4	K.AVCCEDHIHCCPAGFQCHTEK.G
*	TK090902_P14_mitoch_2D_step04.2058.2058.3	1.322	0.0791	3258.34	279	980.0%	1	R.QTTPLQIGDIGCDQHTSCPVGQTCCPSLK.G
*	TK090902_P14_mitoch_2D_step04.3003.3003.3	1.7035	0.0323	2159.38	16	2790.0%	1	K.DSAGVWACCPYLKGVCCR.D
*	TK090902_P14_mitoch_2D_step13.1721.1721.2	2.9031	0.6632	1906.91	1	6670.0%	1	R.VHCCPHGASCDLVHTR.C

Q9JJB2

99.6%

20.3%

227

25172

7.7

(Q9JJB2) Brain cDNA, clone MNCb-4134

*	TK090902_P14_mitoch_2D_step09.3347.3347.1	2.8938	0.4728	1560.02	1	5000.0%	1	R.NLHHEVELGVLLGK.R
*	TK090902_P14_mitoch_2D_step09.2097.2097.3	0.9001	0.0945	3548.06	16	970.0%	1	R.GEAIPEAAAMDYVAGYALCLDMTARDVQEECK.K

RAC2_MOUSE

99.6%

21.9%

192

21441

7.6

(Q05144) Ras-related C3 botulinum toxin substrate 2 (p21-Rac2) (EN-7 protein)

	TK090902_P14_mitoch_2D_step10.3047.3047.3	1.4597	0.0078	3275.28	10	1570.0%	1	R.LRPLSYPQTDVFLICFSLVSPASYENVR.A
	TK090902_P14_mitoch_2D_step13.2525.2525.1	2.3792	0.4634	1561.85	1	5000.0%	2	R.HHCPSTPIILVGTK.L

EFTU_HUMAN

99.6%

23.7%

452

49542

7.6

(P49411) Elongation factor Tu, mitochondrial precursor (P43)

*	TK090902_P14_mitoch_2D_step13.1865.1865.2	3.3178	0.5846	1813.61	1	6880.0%	1	R.DKPHVNVGTIGHVDHGK.T
*	TK090902_P14_mitoch_2D_step08.2198.2198.2	3.7424	0.6482	1773.5	1	5710.0%	5	R.HYAHTDCPGHADYVK.N
*	TK090902_P14_mitoch_2D_step13.2313.2313.2	2.7552	0.4351	1621.81	1	5360.0%	4	R.GLVMVKPGSIKPHQK.V
*	TK090902_P14_mitoch_2D_step05.3703.3703.3	1.3475	0.1862	3658.12	2	1560.0%	1	K.LLDAVDTYIPVPARDLEKPFLLPVEAVYSVPGR.G
*	TK090902_P14_mitoch_2D_step08.4438.4438.3	1.0235	0.2053	4569.08	4	550.0%	1	R.HYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTR.E

TSP1_MOUSE

99.6%

1170

129647

5.0

(P35441) Thrombospondin 1 precursor

	TK090902_P14_mitoch_2D_step02.3831.3831.3	1.3368	0.1294	4459.52	1	1450.0%	1	R.CECKPGYAGNGIICGEDTDLDGWPNENLVCVANATYHCK.K
*	TK090902_P14_mitoch_2D_step12.2285.2285.2	3.1092	0.5732	1619.24	1	6670.0%	1	K.RPPLCFHNGVQYK.N

Q9DCJ5

99.6%

30.8%

172

19992

8.5

(Q9DCJ5) 0610033L03Rik protein (RIKEN cDNA 0610033L03 gene)

*	TK090902_P14_mitoch_2D_step05.2505.2505.2	3.5565	0.62	1834.09	1	5310.0%	4	R.ARPEPNPVIEGDLKPAK.H
*	TK090902_P14_mitoch_2D_step06.1805.1805.1	0.8774	0.0258	1328.56	13	3180.0%	1	K.AAAHHYGAQCDK.T
*	TK090902_P14_mitoch_2D_step04.2950.2950.1	1.2167	0.1836	1311.97	194	3500.0%	1	K.LVNGCALNFFR.Q
*	TK090902_P14_mitoch_2D_step05.2175.2175.2	1.8924	0.328	1584.05	1	5000.0%	3	K.TDRPLPENPYHSR.A

OAT_MOUSE

99.6%

349

29.6%

439

48355

6.6

(P29758) Ornithine aminotransferase, mitochondrial precursor (EC 2.6.1.13) (Ornithine--oxo-acid aminotransferase)

*	TK090902_P14_mitoch_2D_step06.3568.3568.2	2.3748	0.4885	2316.41	1	2890.0%	11	R.QYFDFLSAYGAVSQGHCHPK.I
	TK090902_P14_mitoch_2D_step10.2756.2756.2	2.018	0.356	1892.48	1	4690.0%	6	R.LRDNGLLAKPTHGDIIR.L
	TK090902_P14_mitoch_2D_step06.3537.3537.2	2.802	0.5658	1815.03	1	5000.0%	10	R.HQVLFIADEIQTGLAR.T
*	TK090902_P14_mitoch_2D_step10.4012.4012.3	1.02	0.1878	4107.75	3	1250.0%	4	K.ALSGGLYPVSAVLCDDEIMLTIKPGEHGSTYGGNPLGCR.I
*	TK090902_P14_mitoch_2D_step04.2707.2707.2	3.758	0.581	1769.56	1	5710.0%	2	K.KTEQGPPSSEYIFER.E
*	TK090902_P14_mitoch_2D_step01.1330.1330.1	1.1024	0.0754	852.64	10	4290.0%	2	R.LAPPLVIK.E
	TK090902_P14_mitoch_2D_step05.2623.2623.2	1.6835	0.3035	1621.23	1	4640.0%	2	R.DNGLLAKPTHGDIIR.L
	TK090902_P14_mitoch_2D_step10.2903.2903.2	3.2798	0.5479	1739.86	1	5710.0%	8	K.YGAHNYHPLPVALER.G

COMT_MOUSE

99.6%

265

29496

5.8

(O88587) Catechol O-methyltransferase, membrane-bound form (EC 2.1.1.6) (MB-COMT) [Contains: Catechol O-methyltransferase, soluble form (S-COMT)]

*	TK090902_P14_mitoch_2D_step12.3064.3064.3	4.2821	0.583	2840.56	1	2810.0%	1	R.HVQQHAKPGDPQSVLEAIDTYCSEK.E

ANX2_MOUSE

99.6%

338

38545

7.7

(P07356) Annexin II (Lipocortin II) (Calpactin I heavy chain) (Chromobindin 8) (P36) (Protein I) (Placental anticoagulant protein IV) (PAP-IV)

*	TK090902_P14_mitoch_2D_step10.3861.3861.3	0.9653	0.112	4011.05	65	790.0%	1	-.STVHEILCKLSLEGDHSTPPSAYGSVKPYTNFDAER.D
	TK090902_P14_mitoch_2D_step06.1832.1832.1	0.8979	0.0697	746.18	14	5000.0%	1	R.KGTDVPK.W
	TK090902_P14_mitoch_2D_step07.4113.4113.2	4.8558	0.5582	1653.05	1	7330.0%	3	K.SALSGHLETVILGLLK.T

CD36_MOUSE

99.6%

20.6%

471

52567

8.3

(Q08857) Platelet glycoprotein IV (GPIV) (GPIIIB) (CD36 antigen) (PAS IV) (PAS-4 protein)

*	TK090902_P14_mitoch_2D_step05.3823.3823.3	1.3494	0.0151	3851.14	5	1590.0%	4	K.EGKPVYISLPHFLHASPDVSEPIEGLHPNEDEHR.T
*	TK090902_P14_mitoch_2D_step15.3699.3699.3	0.9983	0.0166	3590.38	4	1030.0%	1	-.GCDRNCGLIAGAVIGAVLAVFGGILMPVGDMLIEK.T
*	TK090902_P14_mitoch_2D_step09.3193.3193.3	1.3899	0.1035	3252.05	32	1390.0%	1	R.NLSYWPSYCDMINGTDAASFPPFVEKSR.T

Q9CYY9

99.6%

741

84962

6.3

(Q9CYY9) Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3

	TK090902_P14_mitoch_2D_step13.3744.3744.3	1.3896	0.0175	3632.35	1	1500.0%	1	R.ISLFLHNSEVYHEPHIADAWPQLQDHFSAVK.L
	TK090902_P14_mitoch_2D_step08.1706.1706.3	1.3838	0.1103	1826.01	123	2330.0%	1	R.VLLAVFVEQPTPFLPR.F
	TK090902_P14_mitoch_2D_step10.2328.2328.2	1.6114	0.4532	1427.26	2	5000.0%	4	R.LTHYHEGLPTTR.G
	TK090902_P14_mitoch_2D_step08.2324.2324.1	0.8373	0.116	1486.74	9	2080.0%	1	K.GVDYEGGGCRFLR.Y
	TK090902_P14_mitoch_2D_step03.2947.2947.2	0.7529	0.0291	2179.28	19	1670.0%	1	K.EVFSSSDTDPDMAFCKSVR.D
	TK090902_P14_mitoch_2D_step01.3338.3338.1	0.6627	0.0202	1016.41	17	3120.0%	1	R.KVIAPMLSR.H

HS9B_MOUSE

99.6%

723

83194

5.0

(P11499) Heat shock protein HSP 90-beta (HSP 84) (Tumor specific transplantation 84 kDa antigen) (TSTA)

	TK090902_P14_mitoch_2D_step06.4910.4910.2	0.8129	0.0082	3190.26	56	1070.0%	1	K.HNDDEQYAWESSAGGSFTVRADHGEPIGR.G
	TK090902_P14_mitoch_2D_step05.3065.3065.2	2.2509	0.4326	1785.04	1	4640.0%	1	K.HLEINPDHPIVETLR.Q
	TK090902_P14_mitoch_2D_step11.2954.2954.2	3.4488	0.4126	1913.68	1	5670.0%	2	K.KHLEINPDHPIVETLR.Q

Q9ERD3

99.6%

26.4%

159

17543

4.2

(Q9ERD3) Telokin

*	TK090902_P14_mitoch_2D_step08.3735.3735.3	4.281	0.6235	4552.82	1	2320.0%	2	K.SSTGSPTSPINAEKLESEDDVSQAFLEAVAEEKPHVKPYFSK.T

SUCA_MOUSE

99.6%

245

333

34994

9.4

(Q9WUM5) Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial precursor (EC 6.2.1.4) (Succinyl-CoA synthetase, alpha chain) (SCS-alpha)

*	TK090902_P14_mitoch_2D_step11.2122.2122.1	1.6124	0.326	916.93	1	6670.0%	1	R.KHIYIDK.N
	TK090902_P14_mitoch_2D_step03.2170.2170.1	2.3619	0.2763	1085.01	1	6360.0%	11	R.MGHAGAIIAGGK.G
*	TK090902_P14_mitoch_2D_step11.3311.3311.2	4.3803	0.612	1684.7	1	6560.0%	11	K.AKPVVSFIAGITAPPGR.R
	TK090902_P14_mitoch_2D_step13.1944.1944.2	3.8677	0.4591	1240.25	1	7920.0%	1	R.RMGHAGAIIAGGK.G

SDFL_MOUSE

99.6%

42.5%

221

23648

7.4

(Q9ESP1) Stromal cell-derived factor 2-like protein 1 precursor (SDF2 like protein 1)

	TK090902_P14_mitoch_2D_step14.3314.3314.3	3.4178	0.5546	3937.49	1	2130.0%	2	K.NLHTHHFPSPLSNNQEVSAFGEDGEGDDLDLWTVR.C
*	TK090902_P14_mitoch_2D_step13.1869.1869.2	3.6531	0.6216	2003.35	1	5290.0%	1	R.GQHEVHGMPSANAHNTWK.A
*	TK090902_P14_mitoch_2D_step06.4048.4048.3	1.8841	0.118	2982.34	2	2120.0%	2	R.EASVRFQHVGTSVFLSVTGEQYGNPIR.G
	TK090902_P14_mitoch_2D_step13.1394.1394.1	0.7423	0.1612	1540.84	7	1540.0%	1	R.CGQAVRLTHVLTGK.N

D3D2_MOUSE

99.6%

21.5%

289

32078

8.7

(P42125) 3,2-trans-enoyl-CoA isomerase, mitochondrial precursor (EC 5.3.3.8) (Dodecenoyl-CoA delta-isomerase)

*	TK090902_P14_mitoch_2D_step11.2333.2333.3	0.8354	0.1189	3262.47	1	1120.0%	1	R.LYTSNMILVSAINGASPAGGCLLALCCDYR.V
*	TK090902_P14_mitoch_2D_step04.2722.2722.1	1.3177	0.2553	1020.87	1	5710.0%	1	K.SLHMYLEK.L
*	TK090902_P14_mitoch_2D_step05.2745.2745.2	3.7955	0.4973	1657.98	1	6000.0%	2	K.RVLVETEGPAGVAVMK.L
*	TK090902_P14_mitoch_2D_step01.2226.2226.1	1.5421	0.3439	1501.88	1	4640.0%	3	R.VLVETEGPAGVAVMK.L
*	TK090902_P14_mitoch_2D_step05.4711.4711.3	1.2907	0.1111	4304.31	29	1080.0%	1	K.NVQELWLRLYTSNMILVSAINGASPAGGCLLALCCDYR.V

HBB1_MOUSE

99.6%

362

63.0%

146

15709

7.6

(P02088) Hemoglobin beta-1 chain (B1) (Major)

	TK090902_P14_mitoch_2D_step03.2378.2378.1	1.3214	0.0585	1139.13	1	5910.0%	5	K.VVAGVATALAHK.Y
	TK090902_P14_mitoch_2D_step01.2760.2760.2	1.0576	0.1342	1758.46	10	3330.0%	1	K.VITAFNDGLNHLDSLK.G
	TK090902_P14_mitoch_2D_step03.2629.2629.2	1.2904	0.1894	1467.67	1	4170.0%	1	K.GTFASLSELHCDK.L
	TK090902_P14_mitoch_2D_step07.2709.2709.1	1.2532	0.2352	1438.96	1	3460.0%	2	K.VVAGVATALAHKYH.-
	TK090902_P14_mitoch_2D_step01.0051.0051.1	2.85	0.2496	1296.86	1	6360.0%	1	K.DFTPAAQAAFQK.V
	TK090902_P14_mitoch_2D_step07.3233.3233.3	2.4869	0.4921	2575.44	1	2620.0%	2	K.GTFASLSELHCDKLHVDPENFR.L
	TK090902_P14_mitoch_2D_step03.1822.1822.1	1.4967	0.3012	914.9	2	5000.0%	2	-.VHLTDAEK.A
	TK090902_P14_mitoch_2D_step06.3214.3214.2	4.1645	0.5611	1887.47	1	6560.0%	4	K.KVITAFNDGLNHLDSLK.G
	TK090902_P14_mitoch_2D_step04.2517.2517.1	1.3577	0.2656	1129.22	10	4380.0%	2	K.LHVDPENFR.L
	TK090902_P14_mitoch_2D_step02.3087.3087.2	1.9347	0.3417	1982.19	1	3610.0%	2	R.YFDSFGDLSSASAIMGNAK.V

COPP_MOUSE

99.6%

905

102449

5.3

(O55029) Coatomer beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)

*	TK090902_P14_mitoch_2D_step14.2148.2148.2	0.8691	0.0373	1998.93	62	1760.0%	1	K.HSEVQQANLKAMGDTEIK.D
*	TK090902_P14_mitoch_2D_step11.2597.2597.3	4.6791	0.602	3669.18	1	2580.0%	3	K.GFQPSRPTAQQEPDGKPASSPVIMASQTTHKEEK.S

VIME_MOUSE

99.6%

2251

465

53557

5.1

(P20152) Vimentin

	TK090902_P14_mitoch_2D_step01.3235.3235.1	1.627	0.0491	1169.89	1	6110.0%	1	K.ILLAELEQLK.G
*	TK090902_P14_mitoch_2D_step09.4983.4983.3	1.7471	0.247	4042.4	1	1840.0%	46	K.KLHDEEIQELQAQIQEQHVQIDVDVSKPDLTAALR.D
	TK090902_P14_mitoch_2D_step02.3317.3317.1	0.8357	0.142	1298.18	9	2500.0%	9	K.MALDIEIATYR.K
	TK090902_P14_mitoch_2D_step04.4727.4727.1	1.6577	0.1765	1537.0	2	3330.0%	7	R.KVESLQEEIAFLK.K

Q99ML1

99.6%

21.2%

193

20749

7.4

(Q99ML1) PUMA/JFY1 protein

*	TK090902_P14_mitoch_2D_step15.2408.2408.3	4.214	0.5467	4026.25	1	2620.0%	1	R.GPRPDGPQPSLSPAQQHLESPVPSAPEALAGGPTQAAPGVR.V

CCHL_MOUSE

99.6%

272

31008

6.9

(P53702) Cytochrome c-type heme lyase (EC 4.4.1.17) (CCHL) (Holocytochrome c-type synthase)

*	TK090902_P14_mitoch_2D_step09.2880.2880.2	2.8242	0.5978	2021.03	1	4690.0%	2	K.WEALHAHECPCGPSLVR.F

Q9ER58

99.6%

25.3%

423

46863

4.9

(Q9ER58) Testican-2 protein precursor

	TK090902_P14_mitoch_2D_step13.4152.4152.2	0.7923	0.0523	2963.83	95	1200.0%	1	K.EGETPGNFMEDEQWLSSISQYSGKIK.H
*	TK090902_P14_mitoch_2D_step03.4341.4341.3	1.0811	0.2803	3833.4	1	880.0%	1	R.CEGPCPCPTEQSTASTTDSKSETCTGQDLADLGDR.L
*	TK090902_P14_mitoch_2D_step14.3962.3962.2	1.053	0.2138	3175.71	1	1610.0%	1	R.MHGTPDCDDIVGFSGDFGSGVGWEDEEEK.E
*	TK090902_P14_mitoch_2D_step09.2804.2804.2	2.6511	0.4052	2033.58	1	5000.0%	2	K.KKPGVFIPSCDEDGYYR.K

EFB1_MOUSE

99.6%

345

37859

9.0

(P52795) Ephrin-B1 precursor (EPH-related receptor tyrosine kinase ligand 2) (LERK-2) (ELK ligand) (ELK-L) (STRA1 protein) (CEK5 receptor ligand) (CEK5-L)

*	TK090902_P14_mitoch_2D_step12.3087.3087.3	3.1507	0.4519	3694.19	1	2100.0%	1	K.LYLVRPEQAAACSTVLDPNVLVTCNKPHQEIR.F

O35114

99.6%

478

54044

5.1

(O35114) CD36 antigen (Collagen type I receptor, thrombospondin receptor)-like 2 (MLGP85/LIMP II)

*	TK090902_P14_mitoch_2D_step02.3121.3121.3	0.6691	0.0392	3976.73	173	500.0%	1	R.YKVPAEILANTSENAGFCIPEGNCMDSGVLNISICK.N
*	TK090902_P14_mitoch_2D_step15.2253.2253.2	1.0099	0.0312	2001.8	10	2810.0%	1	R.TMVFPVMYLNESVLIDK.E
*	TK090902_P14_mitoch_2D_step12.4549.4549.2	1.5764	0.2181	2750.6	1	2390.0%	7	K.GMHPNKEEHESFVDINPLTGIILR.G

VINC_HUMAN

99.6%

1.2%

1133

123668

5.7

(P18206) Vinculin (Metavinculin)

*	TK090902_P14_mitoch_2D_step01.1469.1469.1	2.3475	0.5146	1460.95	1	4620.0%	1	K.AQQVSQGLDVLTAK.V

Q9Z1Y4

99.6%

22.1%

480

50934

7.3

(Q9Z1Y4) Zyxin related protein-1 (Thyroid hormone receptor interactor 6) (TRIP6)

*	TK090902_P14_mitoch_2D_step14.1247.1247.3	1.3949	0.0715	2002.58	1	2760.0%	1	R.RGASQASGPLPGPHFPLTGR.G
*	TK090902_P14_mitoch_2D_step15.2940.2940.3	3.9156	0.5906	4280.91	1	1880.0%	1	R.GGSLKPSGGAVPTPMLPASHYGGPTPASYATASTPAGPAFPVQVK.V
*	TK090902_P14_mitoch_2D_step06.4128.4128.3	1.6225	0.0608	4022.9	34	1190.0%	2	R.EPGPGVPEGPSGVHIPAGGGRGGGHEPQGPLGQPPEEELER.L

AC48_MOUSE

99.6%

439

50560

8.6

(Q9R0X4) 48 kDa acyl-CoA thioester hydrolase, mitochondrial precursor (EC 3.1.2.-) (p48) (Mt-ACT48) (Protein U8)

*	TK090902_P14_mitoch_2D_step11.3457.3457.1	1.4504	0.0957	1084.41	1	4380.0%	2	R.KLLHSFLPK.S
*	TK090902_P14_mitoch_2D_step12.3784.3784.2	1.6639	0.2162	2698.08	1	2500.0%	1	R.ILEDLDSLGVLVCYMHNHNHSTK.M
*	TK090902_P14_mitoch_2D_step09.2585.2585.2	2.6953	0.5613	1331.83	1	7500.0%	1	K.ISEPLHIHQVR.D
	TK090902_P14_mitoch_2D_step08.1822.1822.1	0.8131	0.1269	567.84	11	5000.0%	1	R.ILPPK.A

Q9CZN1

99.6%

265

29261

9.3

(Q9CZN1) 9430083G14Rik protein (RIKEN cDNA 9430083G14 gene)

*	TK090902_P14_mitoch_2D_step09.3161.3161.2	2.2211	0.347	2177.08	1	3890.0%	7	K.QLVRPDQLPIYTAPPLHSK.Y

Q9CPV3

99.6%

142

16493

9.2

(Q9CPV3) 2900055D03Rik protein (RIKEN cDNA 2900055D03 gene)

*	TK090902_P14_mitoch_2D_step12.3069.3069.3	2.674	0.4854	4408.83	1	1670.0%	2	R.TIVCYHPSVDIPYEHTKPIPQPDLLHNNEETHEQILK.A

CBR2_MOUSE

99.6%

212

8652

84.8%

244

25958

9.0

(P08074) Lung carbonyl reductase [NADPH] (EC 1.1.1.184) (NADPH-dependent carbonyl reductase) (LCR) (Adipocyte P27 protein) (AP27)

*	TK090902_P14_mitoch_2D_step04.1568.1568.1	1.1095	0.2538	756.34	23	3570.0%	5	K.ALHASGAK.V
*	TK090902_P14_mitoch_2D_step10.4727.4727.2	4.5628	0.6261	2070.13	1	6470.0%	66	K.FAEVEDVVNSILFLLSDR.S
*	TK090902_P14_mitoch_2D_step01.2554.2554.1	2.7618	0.4778	1576.79	1	5360.0%	6	R.VNSVNPTVVLTDMGK.K
*	TK090902_P14_mitoch_2D_step04.2405.2405.1	2.1456	0.2718	1087.1	5	6110.0%	10	K.AMAMELGPHK.I
*	TK090902_P14_mitoch_2D_step11.4783.4783.2	2.3443	0.3652	2197.8	1	4170.0%	18	R.KFAEVEDVVNSILFLLSDR.S
*	TK090902_P14_mitoch_2D_step12.2937.2937.2	1.7116	0.0944	1917.23	8	3240.0%	1	K.GAMTMLTKAMAMELGPHK.I
*	TK090902_P14_mitoch_2D_step01.2807.2807.2	0.8987	0.1172	2291.89	2	1840.0%	1	K.ECPGIEPVCVDLGDWDATEK.A
*	TK090902_P14_mitoch_2D_step01.0345.0345.1	1.4683	0.2234	823.73	25	5000.0%	3	R.SFSVNLR.S
*	TK090902_P14_mitoch_2D_step03.2788.2788.2	0.8433	0.1081	1253.17	2	3500.0%	1	R.SVFQVSQMVAR.D
*	TK090902_P14_mitoch_2D_step01.0430.0430.1	0.9614	0.0246	1049.94	1	5000.0%	2	R.TNSDLVSLAK.E
*	TK090902_P14_mitoch_2D_step11.2663.2663.1	1.6537	0.1739	1356.17	1	5000.0%	4	K.AMAMELGPHKIR.V
*	TK090902_P14_mitoch_2D_step03.2820.2820.2	1.5146	0.4618	1627.73	3	2350.0%	1	R.SASTSGGGILVDAGYLAS.-
*	TK090902_P14_mitoch_2D_step12.1260.1260.1	0.8958	0.05	809.13	3	8000.0%	3	K.ERHPLR.K
*	TK090902_P14_mitoch_2D_step12.4169.4169.2	4.4143	0.6274	2897.28	1	3520.0%	54	K.ALGGIGPVDLLVNNAALVIMQPFLEVTK.E
*	TK090902_P14_mitoch_2D_step07.4973.4973.2	3.6176	0.6827	2910.32	1	3150.0%	29	R.GVPGSIVNVSSMVAHVTFPNLITYSSTK.G
*	TK090902_P14_mitoch_2D_step04.2151.2151.2	1.6776	0.3598	1122.78	1	5560.0%	2	K.KVSADPEFAR.K
*	TK090902_P14_mitoch_2D_step01.0941.0941.1	1.1174	0.0025	806.79	12	6670.0%	1	K.LNFSGLR.A

T9S2_MOUSE

99.6%

662

75330

7.4

(P58021) Transmembrane 9 superfamily protein member 2 precursor

*	TK090902_P14_mitoch_2D_step09.2385.2385.2	3.8243	0.5885	2125.34	1	4720.0%	2	K.HTHIDKPDCSGPAMDISNK.A

Q9CZN7

99.6%

504

55759

8.5

(Q9CZN7) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT)

	TK090902_P14_mitoch_2D_step03.1900.1900.1	0.9284	0.2623	888.32	24	2500.0%	1	R.LGAPALTSR.Q
	TK090902_P14_mitoch_2D_step08.3595.3595.2	6.0244	0.6892	1721.65	1	8120.0%	6	R.AHLLADMAHISGLVAAK.V

RADI_MOUSE

99.6%

8.6%

583

68452

6.1

(P26043) Radixin

	TK090902_P14_mitoch_2D_step12.1752.1752.1	0.6805	0.0137	1414.78	14	1500.0%	1	K.KEEEATEWQHK.A
	TK090902_P14_mitoch_2D_step11.3810.3810.2	1.5624	0.0889	2019.61	1	3440.0%	2	K.EIHKPGYLANDRLLPQR.V
	TK090902_P14_mitoch_2D_step13.2012.2012.1	1.4457	0.0245	1496.87	4	3330.0%	3	K.KTQNDVLHAENVK.A
	TK090902_P14_mitoch_2D_step06.2104.2104.1	2.2728	0.3887	1250.99	2	5620.0%	4	R.IQNWHEEHR.G

Q9D050

99.6%

312

34554

8.1

(Q9D050) 2310034D24Rik protein

	TK090902_P14_mitoch_2D_step14.1597.1597.1	1.0975	0.0728	1120.01	4	5000.0%	1	R.RGLFTGLTPR.L
	TK090902_P14_mitoch_2D_step13.3442.3442.2	2.6428	0.5534	1780.41	1	5330.0%	2	R.SAATLITHPFHVITLR.S
*	TK090902_P14_mitoch_2D_step10.2516.2516.1	1.2057	0.01	1331.01	16	4000.0%	1	K.EYSSSFDRVIK.E

MVP_MOUSE

99.6%

2.1%

861

95952

5.6

(Q9EQK5) Major vault protein (MVP)

	TK090902_P14_mitoch_2D_step12.2725.2725.2	3.9417	0.6433	2155.34	1	6180.0%	4	R.IPPYHYIHVLDQNSNVSR.V

Q924V8

99.6%

208

36.6%

565

61810

6.8

(Q924V8) Carboxylesterase MH1 (EC 3.1.1.1)

	TK090902_P14_mitoch_2D_step02.3159.3159.1	0.611	0.0303	1138.04	6	2500.0%	1	K.EVSFWAELR.A
	TK090902_P14_mitoch_2D_step09.4135.4135.3	1.653	0.0463	3556.24	1	1850.0%	1	K.SFSTVPYIVGINKQEFGWIIPTLMGYPLAEGK.L
	TK090902_P14_mitoch_2D_step05.3464.3464.3	1.3692	0.1684	2807.59	4	1740.0%	1	R.DAGASTYMYEFEYRPSFVSAMRPK.A
	TK090902_P14_mitoch_2D_step06.2445.2445.1	1.8032	0.3422	1377.85	1	5000.0%	4	K.TTTSAVMVHCLR.Q
	TK090902_P14_mitoch_2D_step02.3695.3695.2	4.2822	0.5874	2138.22	1	5790.0%	1	K.AVIGDHGDEIFSVFGSPFLK.D
	TK090902_P14_mitoch_2D_step03.3682.3682.2	1.5689	0.1783	2862.15	1	2610.0%	3	K.ENIPLQFSEDCLYLNIYTPADLTK.N
	TK090902_P14_mitoch_2D_step01.1697.1697.1	2.7487	0.3843	1332.07	1	6360.0%	3	K.ISENMIPVVAEK.Y
	TK090902_P14_mitoch_2D_step03.4107.4107.2	0.9399	0.2945	3148.51	1	1610.0%	12	R.AISESGVSLTAALITTDVKPIAGLVATLSGCK.T
	TK090902_P14_mitoch_2D_step01.0239.0239.1	1.141	0.2445	871.63	5	4290.0%	2	K.LDLLGNPK.E
	TK090902_P14_mitoch_2D_step03.4582.4582.2	3.2767	0.5074	2309.01	1	4750.0%	3	K.DLFQDLMADVVFGVPSVIVSR.S
	TK090902_P14_mitoch_2D_step01.4088.4088.2	1.6598	0.2277	2152.76	4	2780.0%	1	K.QEFGWIIPTLMGYPLAEGK.L
	TK090902_P14_mitoch_2D_step04.3003.3003.2	2.9604	0.4892	1439.92	1	7080.0%	1	R.GNWGHLDQVAALR.W

CLH1_HUMAN

99.6%

16.8%

1675

191613

5.7

(Q00610) Clathrin heavy chain 1 (CLH-17)

	TK090902_P14_mitoch_2D_step05.2115.2115.1	1.6469	0.3474	1070.15	1	6250.0%	2	R.AHIAQLCEK.A
*	TK090902_P14_mitoch_2D_step05.2108.2108.2	1.8738	0.4004	1779.77	1	4670.0%	1	R.IHEGCEEPATHNALAK.I
*	TK090902_P14_mitoch_2D_step11.4362.4362.3	1.5005	0.323	3468.24	4	1250.0%	3	R.DPHLACVAYERGQCDLELINVCNENSLFK.S
*	TK090902_P14_mitoch_2D_step08.1872.1872.1	0.7817	0.1264	753.93	7	5000.0%	1	K.KDSLYK.D
	TK090902_P14_mitoch_2D_step01.2403.2403.1	1.3741	0.0718	1453.77	4	4090.0%	1	K.TLQIFNIEMKSK.M
*	TK090902_P14_mitoch_2D_step07.4533.4533.3	0.8748	0.0427	3630.75	58	750.0%	1	K.SFEGLFYFLGSIVNFSQDPDVHFKYIQAACK.T
*	TK090902_P14_mitoch_2D_step07.4083.4083.2	4.7485	0.6055	2371.49	1	5500.0%	5	R.KFDVNTSAVQVLIEHIGNLDR.A
*	TK090902_P14_mitoch_2D_step04.2962.2962.3	1.2051	0.0124	2361.57	6	2140.0%	1	K.MEGNAEESTLFCFAVRGQAGGK.L
*	TK090902_P14_mitoch_2D_step04.3397.3397.3	1.0233	0.1363	3501.02	13	1210.0%	1	R.AVVHTHLLNPEWLVNYFGSLSVEDSLECLR.A
*	TK090902_P14_mitoch_2D_step04.3749.3749.2	0.887	0.0644	2443.45	5	1740.0%	1	R.GQAGGKLHIIEVGTPPTGNQPFPK.K
*	TK090902_P14_mitoch_2D_step11.3923.3923.3	0.8817	0.0221	3437.75	91	930.0%	1	K.HDVVFLITKYGYIHLYDLETGTCIYMNR.I
*	TK090902_P14_mitoch_2D_step02.2688.2688.3	1.1309	0.0087	2835.9	92	1670.0%	1	K.TNRLAELEEFINGPNNAHIQQVGDR.C
*	TK090902_P14_mitoch_2D_step14.3748.3748.3	0.9237	0.1181	3634.27	3	730.0%	1	K.AVDVFFPPEAQNDFPVAMQISEKHDVVFLITK.Y
*	TK090902_P14_mitoch_2D_step11.2489.2489.1	1.3007	0.0232	1427.86	1	4550.0%	1	R.ENPYYDSRVVGK.Y

Q99KI0

99.6%

174

34.2%

780

85464

7.9

(Q99KI0) Similar to mitochondrial aconitase (Nuclear aco2 gene)

	TK090902_P14_mitoch_2D_step01.0144.0144.1	1.087	0.0653	773.18	26	5000.0%	1	K.LTIQGLK.D
	TK090902_P14_mitoch_2D_step06.2736.2736.2	3.971	0.6465	2263.87	1	5250.0%	3	K.VAVPSTIHCDHLIEAQVGGEK.D
	TK090902_P14_mitoch_2D_step09.1992.1992.2	1.0147	0.0556	1864.04	2	3000.0%	1	K.CTTDHISAAGPWLKFR.G
	TK090902_P14_mitoch_2D_step04.1672.1672.1	1.1043	0.1903	708.9	3	6000.0%	1	K.IHPVDK.L
	TK090902_P14_mitoch_2D_step01.2190.2190.1	2.124	0.2393	1270.74	1	6000.0%	5	K.FNPETDFLTGK.D
	TK090902_P14_mitoch_2D_step09.4073.4073.3	1.468	0.2107	4560.85	11	1050.0%	4	K.GGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHR.M
	TK090902_P14_mitoch_2D_step03.3277.3277.2	2.5035	0.5154	2223.2	1	4750.0%	5	R.GHLDNISNNLLIGAINIENGK.A
	TK090902_P14_mitoch_2D_step01.0501.0501.1	0.8239	0.2733	1558.81	2	2690.0%	1	K.CTTDHISAAGPWLK.F
	TK090902_P14_mitoch_2D_step04.2393.2393.1	1.4646	0.3236	1171.43	245	4440.0%	3	R.LNRPLTLSEK.I
	TK090902_P14_mitoch_2D_step01.2768.2768.1	1.3623	0.3195	1103.35	6	3750.0%	1	R.LQLLEPFDK.W
*	TK090902_P14_mitoch_2D_step10.3616.3616.2	0.875	0.106	2940.63	5	1400.0%	1	K.LEAPDADELPRSDFDPGQDTYQHPPK.D
	TK090902_P14_mitoch_2D_step03.1794.1794.1	1.3186	0.1089	856.29	6	5830.0%	8	R.IHETNLK.K
	TK090902_P14_mitoch_2D_step02.3843.3843.2	1.8694	0.396	2784.92	1	2500.0%	2	R.NDANPETHAFVTSPEIVTALAIAGTLK.F
	TK090902_P14_mitoch_2D_step03.2068.2068.1	1.3521	0.1959	975.13	1	5620.0%	1	K.DFAPGKPLK.C
*	TK090902_P14_mitoch_2D_step01.1854.1854.1	2.0183	0.2004	1567.62	1	5830.0%	2	K.VAMSHFEPSEYIR.Y
	TK090902_P14_mitoch_2D_step01.2363.2363.1	1.0723	0.052	1201.12	15	3890.0%	1	K.DLEDLQILIK.V
	TK090902_P14_mitoch_2D_step11.2305.2305.2	1.2749	0.161	1590.25	80	2920.0%	1	R.LQLLEPFDKWDGK.D
	TK090902_P14_mitoch_2D_step11.3666.3666.3	2.5826	0.4877	2929.44	1	2170.0%	2	K.HPNGTQETILLNHTFNETQIEWFR.A
	TK090902_P14_mitoch_2D_step01.2026.2026.1	1.129	0.4014	1500.75	4	2920.0%	1	K.FKLEAPDADELPR.S

Q9D120

99.6%

22.6%

168

17788

4.8

(Q9D120) 18 days embryo cDNA, RIKEN full-length enriched library, clone:1110033H09, full insert sequence

	TK090902_P14_mitoch_2D_step11.4367.4367.1	0.6887	0.0531	1426.29	23	1820.0%	1	K.TQEKDDDMLFAL.-
	TK090902_P14_mitoch_2D_step14.2103.2103.3	3.3194	0.5182	2584.05	1	3200.0%	1	K.AADRLPNLASPSAEGPPRPSPGTAPR.R
	TK090902_P14_mitoch_2D_step14.2092.2092.2	1.0987	0.024	2170.47	38	1900.0%	1	R.LPNLASPSAEGPPRPSPGTAPR.R

CACP_MOUSE

99.6%

106

627

70835

8.2

(P47934) Carnitine O-acetyltransferase (EC 2.3.1.7) (Carnitine acetylase) (CAT)

*	TK090902_P14_mitoch_2D_step04.2438.2438.2	0.9955	0.0094	3122.99	14	1400.0%	1	K.QNLSIMIQDLDIMMLTFHHFGKDFPK.S
*	TK090902_P14_mitoch_2D_step08.2920.2920.2	1.2085	0.0192	1712.69	2	4670.0%	1	R.TVVKPLGLLKPSSLMK.V
*	TK090902_P14_mitoch_2D_step09.2195.2195.1	3.3111	0.5347	1395.0	1	6150.0%	10	R.NHVAGQMLHGGGSK.F

HBA_MOUSE

99.6%

110

3484

61.7%

141

14954

8.2

(P01942) Hemoglobin alpha chain

	TK090902_P14_mitoch_2D_step03.2937.2937.1	1.1609	0.1251	1254.0	10	4090.0%	2	K.FLASVSTVLTSK.Y
	TK090902_P14_mitoch_2D_step13.3508.3508.3	1.8235	0.33	3854.25	2	1320.0%	1	R.VDPVNFKLLSHCLLVTLASHHPADFTPAVHASLDK.F
	TK090902_P14_mitoch_2D_step01.0453.0453.1	1.5822	0.1871	1031.96	1	5620.0%	15	R.MFASFPTTK.T
	TK090902_P14_mitoch_2D_step01.1535.1535.1	0.9087	0.093	818.1	6	5830.0%	2	R.VDPVNFK.L
	TK090902_P14_mitoch_2D_step08.2963.2963.2	2.9612	0.4177	1823.52	1	4670.0%	6	K.TYFPHFDVSHGSAQVK.G
	TK090902_P14_mitoch_2D_step03.2289.2289.1	2.6006	0.0404	1531.65	1	5360.0%	2	K.IGGHGAEYGAEALER.M
	TK090902_P14_mitoch_2D_step14.3565.3565.2	4.0452	0.6332	3055.38	1	3890.0%	46	K.LLSHCLLVTLASHHPADFTPAVHASLDK.F
	TK090902_P14_mitoch_2D_step13.3321.3321.3	1.4772	0.0449	2831.91	1	2080.0%	2	R.MFASFPTTKTYFPHFDVSHGSAQVK.G

MY1A_MOUSE

99.6%

1107

128528

9.2

(P46735) Myosin IA (Myosin I alpha) (MMI-alpha) (MMIa) (MIH-L)

	TK090902_P14_mitoch_2D_step08.2176.2176.2	1.5859	0.4202	1728.48	1	4620.0%	1	K.LNQVCATHQHFESR.M
*	TK090902_P14_mitoch_2D_step13.2205.2205.2	1.5351	0.2438	1832.27	42	2500.0%	2	R.AGYAFRQAYEPCLER.Y
*	TK090902_P14_mitoch_2D_step09.3008.3008.2	3.4085	0.5872	1796.24	1	6790.0%	1	K.AAHIFNESLVCHQIR.Y

O88653

99.6%

124

13553

7.3

(O88653) MEK binding partner 1 (Mitogen-activated protein kinase kinase 1 interacting protein 1)

	TK090902_P14_mitoch_2D_step08.3182.3182.2	3.4919	0.5831	1722.59	1	6670.0%	5	K.KLPSVEGLHAIVVSDR.D

MPPB_MOUSE

99.6%

16.0%

489

54615

7.0

(Q9CXT8) Mitochondrial processing peptidase beta subunit, mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) (P-52)

	TK090902_P14_mitoch_2D_step05.2968.2968.1	0.9348	0.0476	1195.22	2	2780.0%	1	R.RIPIPELEAR.I
	TK090902_P14_mitoch_2D_step14.2382.2382.2	0.7655	0.0854	2131.92	40	1110.0%	1	K.TNMLLQLDGSTPICEDIGR.Q
*	TK090902_P14_mitoch_2D_step03.3162.3162.2	1.3946	0.2489	1978.65	2	2780.0%	1	R.IVLAAAGGVCHNELLELAK.F
*	TK090902_P14_mitoch_2D_step08.2739.2739.1	1.1878	0.161	1338.38	1	4000.0%	3	K.FHFGDSLCSHK.G
	TK090902_P14_mitoch_2D_step15.2024.2024.3	1.5686	0.179	2280.26	2	2640.0%	1	R.YENEKNNGTAHFLEHMAFK.G

Q9CQU0

99.6%

28.2%

170

19049

5.3

(Q9CQU0) 0610040B21Rik protein (RIKEN cDNA 0610040B21 gene)

*	TK090902_P14_mitoch_2D_step05.3839.3839.3	3.6703	0.553	4504.63	1	2170.0%	2	K.FAESTEISELSHNFVMVNLEDEEEPRDEDFSPDGGYIPR.I
	TK090902_P14_mitoch_2D_step11.2799.2799.1	1.2711	0.2143	1126.13	5	4380.0%	2	K.GFGDHIHWR.T

EPPL_HUMAN

99.6%

5065

553102

5.6

(P58107) Epiplakin (450 kDa epidermal antigen)

	TK090902_P14_mitoch_2D_step08.3327.3327.3	1.5173	8.0E-4	3049.35	20	1250.0%	1	K.GVLRPGTALVLLEAQAATGFVIDPVRNLR.L
*	TK090902_P14_mitoch_2D_step14.1759.1759.2	1.3105	0.109	2248.22	19	2220.0%	1	R.CRPQEDTGWVLFPVNKAAR.D
*	TK090902_P14_mitoch_2D_step14.3238.3238.3	2.203	0.2767	3583.27	2	1670.0%	2	R.VGRTGGQALSTLECVKPYLEGSDCIAGVTVPSTR.E
*	TK090902_P14_mitoch_2D_step10.2113.2113.3	1.3478	0.0309	3192.37	17	1500.0%	1	R.VALALLEAQAATGTIMDPHSPESLSVDEAVR.R
*	TK090902_P14_mitoch_2D_step10.4791.4791.2	0.9073	0.1646	2988.3	1	1350.0%	1	R.AVTGYTDPYTGQQISLFQAMQKGLIVR.E
*	TK090902_P14_mitoch_2D_step06.3166.3166.2	2.9677	0.5773	2030.28	1	4720.0%	2	R.LLEAQIATGGIIDPVHSHR.V
*	TK090902_P14_mitoch_2D_step05.4780.4780.3	1.1428	0.0582	4519.71	33	650.0%	1	R.QLSQAGSFSDGTHGGLRYEQLLALCVTDPETGLAFLPLSGGPR.G
*	TK090902_P14_mitoch_2D_step06.2597.2597.1	1.9687	0.0649	1049.23	4	5560.0%	2	K.RAEGAIAGFR.D

Q91VM9

99.6%

330

38115

7.0

(Q91VM9) Similar to pyrophosphatase (Inorganic)

*	TK090902_P14_mitoch_2D_step13.2912.2912.2	3.8176	0.4239	1832.29	1	6000.0%	1	K.HVAGHYISPFHDIPLK.A
*	TK090902_P14_mitoch_2D_step04.2250.2250.2	0.7701	0.066	2368.91	58	1320.0%	1	R.LFFKHVAGHYISPFHDIPLK.A
*	TK090902_P14_mitoch_2D_step10.2875.2875.1	0.8912	0.1889	1051.92	7	3890.0%	1	R.VGAAARPPRR.V

HO2_MOUSE

99.6%

315

35739

5.9

(O70252) Heme oxygenase 2 (EC 1.14.99.3) (HO-2)

*	TK090902_P14_mitoch_2D_step13.3261.3261.2	3.637	0.5746	2156.96	1	5000.0%	2	R.NKDHPAFAPLYFPTELHR.K
*	TK090902_P14_mitoch_2D_step08.3139.3139.2	1.6752	0.4225	2212.85	1	3610.0%	2	R.IHYVGQNEPELLVAHAYTR.Y

Q9CWK5

99.6%

742

84087

5.4

(Q9CWK5) 2410024C15Rik protein

	TK090902_P14_mitoch_2D_step09.2508.2508.1	1.7335	0.3221	1512.83	1	4090.0%	2	R.DLEAKPHMHEFR.L

Q8VC64

99.6%

416

46538

8.1

(Q8VC64) Similar to choline/ethanolaminephosphotransferase

	TK090902_P14_mitoch_2D_step11.2761.2761.2	2.8758	0.5666	2733.41	1	3750.0%	1	K.RCGDSHPESPVGFGHMSTTGCVLNK.L

Q91YX4

99.6%

16.6%

356

38475

9.6

(Q91YX4) Similar to thioredoxin reductase 2

	TK090902_P14_mitoch_2D_step03.2789.2789.3	1.09	0.1206	2520.91	10	1390.0%	1	R.GAASAAGGQQSFDLLVIGGGSGGLACAK.E
	TK090902_P14_mitoch_2D_step10.2851.2851.2	4.3465	0.6549	2204.63	1	5880.0%	2	R.DAHHYGWEVAQPVQHNWK.T
	TK090902_P14_mitoch_2D_step09.3500.3500.3	1.4433	0.026	3595.89	12	1420.0%	2	K.LMHQAALLGGMIRDAHHYGWEVAQPVQHNWK.T

Q9Z1X5

99.6%

701

78642

6.0

(Q9Z1X5) GLUT4 vesicle protein (Fragment)

	TK090902_P14_mitoch_2D_step12.3508.3508.2	2.0041	0.2515	2157.11	3	2890.0%	2	R.GITSRPEPPSAAILVVYLDR.A
	TK090902_P14_mitoch_2D_step01.1778.1778.1	1.1507	0.0601	1416.95	33	4090.0%	1	R.LEWLSLLPDAEK.L
	TK090902_P14_mitoch_2D_step02.4203.4203.3	0.9521	0.1859	4342.49	46	640.0%	1	R.GEGTGTLGSVSLPLSELLQEDQLCLDHWFALSGQGQVLMR.A
	TK090902_P14_mitoch_2D_step13.2137.2137.2	3.2469	0.4644	2100.17	1	5260.0%	1	R.KGTKPPSPYATITVGETSHK.T
	TK090902_P14_mitoch_2D_step12.2095.2095.1	1.3668	0.2941	1409.09	1	3640.0%	5	R.KPHAESLELQVR.G
	TK090902_P14_mitoch_2D_step08.2520.2520.2	1.5725	0.3913	1973.65	1	3890.0%	1	K.GTKPPSPYATITVGETSHK.T

ALDR_MOUSE

99.6%

315

35601

7.2

(P45376) Aldose reductase (EC 1.1.1.21) (AR) (Aldehyde reductase)

	TK090902_P14_mitoch_2D_step07.2620.2620.1	1.7588	0.4554	1243.44	1	5000.0%	2	K.HKDYPFHAEV.-
	TK090902_P14_mitoch_2D_step09.1984.1984.2	0.8904	0.074	1423.47	1	3180.0%	1	R.FPIQRNLVVIPK.S
	TK090902_P14_mitoch_2D_step01.0905.0905.1	0.7965	0.0697	1105.52	8	2780.0%	1	K.MPTLGLGTWK.S

ACF7_MOUSE

99.6%

5327

607984

5.5

(Q9QXZ0) Actin cross-linking family protein 7 (Microtubule actin crosslinking factor) (MACF)

*	TK090902_P14_mitoch_2D_step05.1853.1853.2	0.8155	0.1086	1496.63	173	1820.0%	1	R.FDIEDSEAECRK.M
	TK090902_P14_mitoch_2D_step02.4809.4809.2	1.0645	0.0818	2549.51	28	1430.0%	1	R.LEQDQTTAQLQVQKAFSIDIIR.H
*	TK090902_P14_mitoch_2D_step10.1880.1880.2	0.8726	0.0038	2222.05	113	1670.0%	1	K.MFELQVTLDPVQLESSLLR.S
*	TK090902_P14_mitoch_2D_step11.3559.3559.3	1.9557	0.2534	3965.05	1	1670.0%	5	R.HQELLSQQQNFIVATQSAQSFLDQHSHNLTPEER.Q
*	TK090902_P14_mitoch_2D_step10.3220.3220.2	1.2607	0.016	2217.91	2	2380.0%	1	K.TGSILPPVGSSVGSVNGYHTCK.D
	TK090902_P14_mitoch_2D_step02.3005.3005.1	0.9573	0.254	1449.83	7	2270.0%	1	K.CTNFSSCWSDGK.M
	TK090902_P14_mitoch_2D_step03.2165.2165.1	1.3286	0.0356	1325.78	10	4000.0%	1	R.DQEPIPQNIDR.V
	TK090902_P14_mitoch_2D_step12.2360.2360.1	1.149	0.0049	1484.04	45	2730.0%	1	K.VVEEEKQEHVEK.V
*	TK090902_P14_mitoch_2D_step03.3661.3661.2	0.9728	0.0079	2809.75	8	1520.0%	1	R.IAEQEHTQEDLQHLRSDLDAISMK.C
*	TK090902_P14_mitoch_2D_step08.2187.2187.1	1.3953	0.1205	907.93	1	6670.0%	2	K.IHQQIIR.H
	TK090902_P14_mitoch_2D_step13.1273.1273.1	1.2854	0.0971	633.84	2	7500.0%	1	K.HHVLK.N
	TK090902_P14_mitoch_2D_step12.2969.2969.3	1.1728	0.0239	3875.49	67	980.0%	1	K.NTLQADAAHLESGQPVQCESDVIMYIQECEGLIR.Q
*	TK090902_P14_mitoch_2D_step01.1949.1949.1	0.6711	0.0244	1267.85	22	2220.0%	1	K.EEIYNQLLDK.G
	TK090902_P14_mitoch_2D_step07.2125.2125.1	2.0408	0.4392	1405.8	1	4090.0%	2	R.ESIAEHKPHIDK.I
*	TK090902_P14_mitoch_2D_step12.2508.2508.3	5.7448	0.6841	3216.92	1	3020.0%	1	R.RQQHEQLNEAAQGILTGPGDMSPSASQVHK.D

Q9DC11

99.6%

22.5%

530

59616

6.6

(Q9DC11) 1200007L24Rik protein

	TK090902_P14_mitoch_2D_step13.2082.2082.1	1.5963	0.1601	1149.76	4	5000.0%	2	K.IHGILSNTHR.Q
*	TK090902_P14_mitoch_2D_step11.4217.4217.2	1.1047	0.0257	3013.79	1	1920.0%	1	K.TEPGETSQTTTTSHTTTMQFRVLTTTR.R
*	TK090902_P14_mitoch_2D_step06.2285.2285.2	3.0207	0.5371	2059.55	1	5620.0%	2	R.HRQDWVDSGCPEEVQSK.E
*	TK090902_P14_mitoch_2D_step13.4534.4534.3	1.1184	0.1474	4476.16	50	580.0%	1	R.ASMGQASPESKGFTDLLLDDGQDNNTQIEEDTDHNYYISR.I
	TK090902_P14_mitoch_2D_step02.4604.4604.2	0.9859	0.0481	2680.51	55	1460.0%	1	R.GSGHPAYAEVEPVGEKEGFIVSEQC.-

HCDH_MOUSE

99.6%

164

40.1%

314

34464

8.6

(Q61425) Short chain 3-hydroxyacyl-CoA dehydrogenase, mitochondrial precursor (EC 1.1.1.35) (HCDH) (Medium and short chain L-3-hydroxyacyl-coenzyme A dehydrogenase)

	TK090902_P14_mitoch_2D_step15.4376.4376.3	1.9486	0.4224	3614.46	1	1670.0%	2	K.HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAK.S
*	TK090902_P14_mitoch_2D_step03.4014.4014.2	3.0387	0.5049	3164.1	1	2410.0%	10	K.TLSCLSTSTDAASVVHSTDLVVEAIVENLK.L
*	TK090902_P14_mitoch_2D_step01.2696.2696.1	1.9993	0.3608	1248.2	1	5560.0%	1	K.TFESLVDFCK.T
*	TK090902_P14_mitoch_2D_step04.2615.2615.1	1.8375	0.074	1049.07	3	6430.0%	1	K.LKNELFQR.L
	TK090902_P14_mitoch_2D_step04.2085.2085.1	1.6915	0.2332	931.64	2	6430.0%	2	K.KTGEGFYK.Y
*	TK090902_P14_mitoch_2D_step13.4500.4500.2	0.9646	0.0385	2783.39	2	1800.0%	2	K.FAAEHTIFASNTSSLQITNIANATTR.Q
*	TK090902_P14_mitoch_2D_step15.1504.1504.1	0.5547	0.0045	866.18	13	2500.0%	1	K.KFTENPK.A

Q9R0E2

99.6%

728

83595

6.5

(Q9R0E2) Lysyl hydroxylase 1 (Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1)

*	TK090902_P14_mitoch_2D_step13.2089.2089.2	1.0043	0.0788	2725.39	104	1740.0%	1	K.EDLVILFVDSYDVVFASGPRELLK.K
*	TK090902_P14_mitoch_2D_step07.2273.2273.1	2.4055	0.369	1398.94	1	6360.0%	4	R.LTHYHEGLPTTK.G

Q8VC93

99.6%

14.1%

128

14551

8.4

(Q8VC93) Prion protein interacting protein

	TK090902_P14_mitoch_2D_step13.2317.2317.2	3.6804	0.6039	1991.69	1	5590.0%	1	K.GLSLQHIGRPHSGIDDCK.N

Q9CQV5

99.6%

167

18901

9.8

(Q9CQV5) 3110030K20Rik protein

*	TK090902_P14_mitoch_2D_step13.1916.1916.2	3.6544	0.6652	2177.62	1	6110.0%	1	K.GNKPVSYEEAHAPHYIAHR.K

NPS2_MOUSE

99.6%

17.1%

281

32933

9.3

(O55126) NipSnap2 protein (Glioblastoma amplified sequence)

*	TK090902_P14_mitoch_2D_step09.2776.2776.2	3.6457	0.3456	1979.09	1	5670.0%	5	K.LQFHNVKPECLDAYNK.I
*	TK090902_P14_mitoch_2D_step08.3184.3184.3	1.584	0.1594	2947.23	4	1850.0%	1	K.LQFHNVKPECLDAYNKICQEVLPK.I
	TK090902_P14_mitoch_2D_step13.1920.1920.1	1.0091	0.0485	1571.85	41	2690.0%	1	R.YEGGYPALTEVMNK.L
	TK090902_P14_mitoch_2D_step07.2137.2137.1	1.2738	0.3056	1097.01	1	4440.0%	1	R.KDAHSNLLAK.K

ZO1_MOUSE

99.6%

1745

194710

6.7

(P39447) Tight junction protein ZO-1 (Zonula occludens 1 protein) (Zona occludens 1 protein) (Tight junction protein 1)

	TK090902_P14_mitoch_2D_step07.2883.2883.3	1.6512	0.0276	2732.45	1	2730.0%	1	K.TITPVYNRFTPKPYTSSARPFER.K
	TK090902_P14_mitoch_2D_step05.3615.3615.3	1.4751	0.0459	3922.78	51	1110.0%	1	R.ATLLNVPDLSDSIHSANASERDDISEIQSLASDHSGR.S
	TK090902_P14_mitoch_2D_step10.2544.2544.2	3.5554	0.5834	1974.09	1	5940.0%	6	R.LPEPQKPQVKPPEDIVR.S
	TK090902_P14_mitoch_2D_step14.2348.2348.3	3.0488	0.5182	3963.09	1	1890.0%	1	K.DVNDTASFKPPEVASKPPGASLAGPKPVPQSQFSEHDK.T
*	TK090902_P14_mitoch_2D_step13.1797.1797.1	1.3167	0.157	1290.92	1	5000.0%	1	R.DGDIQEGDVVLK.I
	TK090902_P14_mitoch_2D_step11.2773.2773.2	2.9634	0.4832	2179.94	1	5000.0%	3	K.FNHNLLPSETVHKPELSSK.T
	TK090902_P14_mitoch_2D_step03.2294.2294.1	1.0011	0.0062	1141.91	139	2780.0%	1	K.ESPYGLSFNK.G
	TK090902_P14_mitoch_2D_step05.3427.3427.2	2.185	0.2844	2069.33	1	3330.0%	3	K.EKGETLLSPLVMCGPHGLK.F
	TK090902_P14_mitoch_2D_step15.2525.2525.3	1.5949	0.2018	3595.19	1	1520.0%	1	R.YDPAQATPPPPPLPSQYSQPAPPLSSSSLHIHSK.G
*	TK090902_P14_mitoch_2D_step12.2640.2640.2	2.0822	0.0677	1803.29	1	4380.0%	1	R.GEGPPLPPHADPAKVYR.K

CD93_MOUSE

99.6%

644

69355

5.1

(O89103) Complement component C1q receptor precursor (Complement component 1, q subcomponent, receptor 1) (C1qRp) (C1qR(p)) (C1q/MBL/SPA receptor) (CD93 antigen) (Cell surface antigen AA4) (Lymphocyte antigen 68)

*	TK090902_P14_mitoch_2D_step04.3117.3117.1	1.5472	0.0112	1281.1	5	5000.0%	7	R.HVQQALTQLLK.T
*	TK090902_P14_mitoch_2D_step02.2533.2533.3	0.9056	0.0596	4392.72	7	670.0%	1	-.MAISTGLFLLLGLLGQPWAGAAADSQAVVCEGTACYTAHWGK.L
*	TK090902_P14_mitoch_2D_step12.3205.3205.2	2.9133	0.5817	1929.79	1	4710.0%	1	K.TPGIFHWGSSGPLCVSPK.F

UCRP_MOUSE

99.6%

37.7%

159

17458

7.9

(Q64339) Ubiquitin cross-reactive protein (Interferon-stimulated protein 15)

*	TK090902_P14_mitoch_2D_step13.3806.3806.3	1.7159	0.2118	4308.41	1	1620.0%	1	R.LAHQTAVLQDGLTLSSLGLGPSSTVMLVVQNCSEPLSILVR.N
*	TK090902_P14_mitoch_2D_step07.3984.3984.2	3.2136	0.5739	2067.38	1	5290.0%	4	R.GHSNIYEVFLTQTVDTLK.K
*	TK090902_P14_mitoch_2D_step09.3976.3976.2	2.119	0.359	2196.02	1	3060.0%	1	R.GHSNIYEVFLTQTVDTLKK.K

CPSM_HUMAN

99.6%

1500

164939

6.7

(P31327) Carbamoyl-phosphate synthase [ammonia], mitochondrial precursor (EC 6.3.4.16) (Carbamoyl-phosphate synthetase I) (CPSASE I)

*	TK090902_P14_mitoch_2D_step03.2467.2467.1	0.9097	0.161	1162.7	34	3120.0%	1	K.FVHDNYVIR.R
*	TK090902_P14_mitoch_2D_step12.3987.3987.2	0.9067	0.1201	2867.77	35	1250.0%	1	K.GQILTMANPIIGNGGAPDTTALDELGLSK.Y
*	TK090902_P14_mitoch_2D_step06.3242.3242.3	3.87	0.5533	3746.9	1	2210.0%	1	R.VISHAISEHVEDAGVHSGDATLMLPTQTISQGAIEK.V
*	TK090902_P14_mitoch_2D_step03.2066.2066.1	2.1524	0.256	1238.76	2	5000.0%	2	R.VSQEHPVVLTK.F

Q9NPL8

99.6%

285

32193

8.2

(Q9NPL8) C3orf1 hypothetical protein

	TK090902_P14_mitoch_2D_step10.3211.3211.2	0.8793	0.1133	2160.47	85	1390.0%	1	R.TAVFVTIFNTVNTSLNVYR.N
	TK090902_P14_mitoch_2D_step11.3997.3997.3	3.3115	0.0806	3010.14	1	2330.0%	6	R.INVGLRGLVAGGIIGALLGTPVGGLLMAFQK.Y

Q9D172

99.6%

35.0%

266

28090

8.8

(Q9D172) DNA segment, Chr 10, Johns Hopkins University 81 expressed (Hypothetical 28.1 kDa protein)

*	TK090902_P14_mitoch_2D_step12.4816.4816.2	1.9135	0.3516	2739.82	1	2080.0%	5	K.VVTTPAFMCETALHHIHDGIGAMVK.N
*	TK090902_P14_mitoch_2D_step08.4108.4108.2	0.8331	0.0867	3049.03	24	1300.0%	2	R.GGAEVQIFAPDVPQMHVIDHTKGEPSER.E
*	TK090902_P14_mitoch_2D_step02.3064.3064.2	1.167	0.1759	2459.49	1	3120.0%	4	K.ITSLAQLNAANHDAAIFPGGFGAAK.N
*	TK090902_P14_mitoch_2D_step12.2991.2991.2	2.1022	0.26	1612.83	1	5360.0%	1	K.KPIGLCCIAPVLAAK.V

Q9CQX8

99.6%

70.6%

102

11101

10.0

(Q9CQX8) 1110018B13Rik protein (RIKEN cDNA 1110018B13 gene)

*	TK090902_P14_mitoch_2D_step11.2721.2721.2	3.218	0.4642	1812.44	1	6920.0%	3	R.RKPMSQEEMEFIQR.G
*	TK090902_P14_mitoch_2D_step13.3586.3586.3	0.886	0.1599	4528.31	151	450.0%	2	K.LSASEALGSAALPSHSSAISQHSKGSTSPDLLMHQGPPDTAEIIK.S
*	TK090902_P14_mitoch_2D_step01.1462.1462.2	0.9605	0.1432	2340.03	1	1960.0%	5	K.LSASEALGSAALPSHSSAISQHSK.G
*	TK090902_P14_mitoch_2D_step13.2324.2324.1	2.5265	0.1408	1429.94	1	5830.0%	2	R.VVQVVKPHAPLIK.F

SPRC_MOUSE

99.6%

16.9%

302

34450

4.9

(P07214) SPARC precursor (Secreted protein acidic and rich in cysteine) (Osteonectin) (ON) (Basement membrane protein BM-40)

*	TK090902_P14_mitoch_2D_step15.1470.1470.3	1.0189	0.0109	3122.43	197	700.0%	2	K.LHLDYIGPCKYIAPCLDSELTEFPLR.M
	TK090902_P14_mitoch_2D_step04.3077.3077.2	1.4757	0.4029	1579.39	4	3080.0%	5	K.RLEAGDHPVELLAR.D
	TK090902_P14_mitoch_2D_step04.2787.2787.1	2.6241	0.4193	1218.0	1	7780.0%	2	K.LHLDYIGPCK.Y
	TK090902_P14_mitoch_2D_step02.3168.3168.1	0.759	0.1741	1404.23	39	2000.0%	1	R.FFETCDLDNDK.Y

Q9CR86

99.6%

10.8%

148

16062

8.2

(Q9CR86) 1200011K09Rik protein (Calcineurin substrate CRHSP-24) (RIKEN cDNA 1200011K09 gene)

	TK090902_P14_mitoch_2D_step06.3490.3490.2	2.9947	0.5995	1677.09	1	6330.0%	1	K.LQAVEVVITHLAPGTK.H

ADT2_MOUSE

99.6%

170

298

32931

9.7

(P51881) ADP,ATP carrier protein, fibroblast isoform (ADP/ATP translocase 2) (Adenine nucleotide translocator 2) (ANT 2)

	TK090902_P14_mitoch_2D_step04.3134.3134.2	1.2968	0.1359	1819.16	7	3930.0%	1	R.KGTDIMYTGTLDCWR.K
	TK090902_P14_mitoch_2D_step01.4378.4378.1	1.0384	0.055	1222.46	1	3330.0%	13	K.DFLAGGVAAAISK.T

Q9CR98

99.6%

138

15674

7.6

(Q9CR98) 2010309E21Rik protein

*	TK090902_P14_mitoch_2D_step06.3517.3517.2	4.7649	0.6423	1996.62	1	6760.0%	2	R.CHAPLAQAQALVTSELER.F

Q99K35

99.6%

315

36269

4.8

(Q99K35) Similar to hypothetical protein LOC57333 (Fragment)

*	TK090902_P14_mitoch_2D_step15.2368.2368.3	2.4648	0.3424	3258.59	1	2230.0%	2	R.VHHGTPLSEAPHDDAHGNFQYDHEAFLGR.D

ACDM_MOUSE

99.6%

421

46481

8.4

(P45952) Acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (EC 1.3.99.3) (MCAD)

*	TK090902_P14_mitoch_2D_step10.2371.2371.2	3.5095	0.5413	1470.37	1	6790.0%	6	R.TRPTVAAGAVGLAQR.A
*	TK090902_P14_mitoch_2D_step01.2201.2201.1	0.8474	0.0535	1234.7	1	3640.0%	1	K.ENVLIGEGAGFK.I
*	TK090902_P14_mitoch_2D_step12.3192.3192.2	1.9912	0.4152	2004.92	1	3610.0%	7	K.AFTGFIVEADTPGIHIGKK.E
*	TK090902_P14_mitoch_2D_step04.3433.3433.2	1.8775	0.3723	1874.94	1	3820.0%	3	K.AFTGFIVEADTPGIHIGK.K

FUMH_MOUSE

99.6%

197

507

54371

9.0

(P97807) Fumarate hydratase, mitochondrial precursor (EC 4.2.1.2) (Fumarase) (EF-3)

	TK090902_P14_mitoch_2D_step07.4091.4091.2	3.9252	0.5539	2470.36	1	4250.0%	9	K.ETAIELGYLTAEQFDEWVKPK.D
*	TK090902_P14_mitoch_2D_step09.3257.3257.2	1.5463	0.3109	2345.57	3	2620.0%	7	K.SQSSNDTFPTAMHIAAAVEVHK.V
*	TK090902_P14_mitoch_2D_step01.1251.1251.1	1.0376	0.2095	868.16	3	5000.0%	2	K.VLLPGLQK.L
	TK090902_P14_mitoch_2D_step01.1783.1783.1	2.4428	0.2675	1206.55	1	6360.0%	1	R.AIEMLGGELGSK.K
*	TK090902_P14_mitoch_2D_step03.1944.1944.1	1.35	0.1558	855.01	1	5710.0%	2	K.LHDALSAK.S
*	TK090902_P14_mitoch_2D_step13.0743.0743.1	1.4374	0.3989	1288.39	1	4500.0%	7	K.KPVHPNDHVNK.S

ILK_MOUSE

99.6%

452

51347

8.1

(O55222) Integrin-linked protein kinase (EC 2.7.1.-)

	TK090902_P14_mitoch_2D_step10.2477.2477.2	3.763	0.6191	1587.02	1	7140.0%	2	R.GDDTPLHLAASHGHR.D

MTE1_MOUSE

99.6%

453

49652

7.4

(Q9QYR9) Acyl coenzyme A thioester hydrolase, mitochondrial precursor (EC 3.1.2.2) (Very-long-chain acyl-CoA thioesterase) (MTE-I)

*	TK090902_P14_mitoch_2D_step05.2159.2159.1	1.0758	0.0128	1079.71	114	2780.0%	1	-.MVASSFAVLR.A
*	TK090902_P14_mitoch_2D_step07.3816.3816.2	3.6398	0.5239	2227.98	1	6110.0%	4	R.AHAVAQVDAWQQLQTFFHK.Q

ACTB_HUMAN

99.6%

106

4216

34.9%

375

41737

5.5

(P02570) Actin, cytoplasmic 1 (Beta-actin) (P02570) Actin, cytoplasmic 1 (Beta-actin)

	TK090902_P14_mitoch_2D_step05.3867.3867.3	1.1658	0.0539	3234.04	1	1940.0%	1	R.CPEALFQPSFLGMESCGIHETTFNSIMK.C
	TK090902_P14_mitoch_2D_step15.3270.3270.3	1.1584	0.1171	3452.82	1	1520.0%	1	K.IWHHTFYNELRVAPEEHPVLLTEAPLNPK.A
	TK090902_P14_mitoch_2D_step03.2990.2990.2	1.6318	0.231	2219.3	2	3000.0%	2	K.DLYANTVLSGGTTMYPGIADR.M
	TK090902_P14_mitoch_2D_step09.3041.3041.2	2.4636	0.4784	1519.46	1	6500.0%	21	K.IWHHTFYNELR.V
	TK090902_P14_mitoch_2D_step01.1754.1754.2	2.7297	0.4713	1954.84	1	5590.0%	2	R.VAPEEHPVLLTEAPLNPK.A
	TK090902_P14_mitoch_2D_step04.4541.4541.2	1.6871	0.5159	2554.74	1	2950.0%	20	K.LCYVALDFEQEMATAASSSSLEK.S
	TK090902_P14_mitoch_2D_step01.3199.3199.2	0.6265	0.1041	3185.31	4	860.0%	1	R.TTGIVMDSGDGVTHTVPIYEGYALPHAILR.L

SPCO_MOUSE

99.6%

141

2363

274421

6.0

(Q62261) Spectrin beta chain, brain 1 (Spectrin, non-erythroid beta chain 1) (Beta-II spectrin) (Fodrin beta chain)

	TK090902_P14_mitoch_2D_step06.2108.2108.3	1.5011	0.0472	2896.55	8	1770.0%	3	R.MHTTFEHDIQALGTQVRQLQEDAAR.L
*	TK090902_P14_mitoch_2D_step08.3798.3798.2	1.6943	0.0885	1980.25	1	4060.0%	1	K.WLHGLEKPGFQSDDYGK.D
	TK090902_P14_mitoch_2D_step05.3200.3200.2	4.408	0.6506	1987.93	1	6560.0%	8	R.MHTTFEHDIQALGTQVR.Q
	TK090902_P14_mitoch_2D_step04.2475.2475.2	0.6427	0.0826	1902.23	28	1390.0%	1	R.AQTLPTSVVTITSESSPGK.R
	TK090902_P14_mitoch_2D_step04.2769.2769.1	1.8476	0.1555	1346.91	1	5000.0%	1	K.HQAFMAELASNK.E
	TK090902_P14_mitoch_2D_step12.3512.3512.2	3.3806	0.6123	2487.54	1	4520.0%	4	K.SNAHYNLQNAFNLAEQHLGLTK.L
	TK090902_P14_mitoch_2D_step06.2721.2721.2	3.2078	0.5676	1776.66	1	6070.0%	2	K.KHEAIETDIAAYEER.V
	TK090902_P14_mitoch_2D_step07.1929.1929.1	1.0373	0.0655	530.72	2	6670.0%	1	K.HVFK.L
	TK090902_P14_mitoch_2D_step12.1517.1517.1	1.0596	0.0618	1181.12	1	3750.0%	1	R.KHEWEAHNK.K
	TK090902_P14_mitoch_2D_step05.3148.3148.2	1.7597	0.3027	1836.74	1	4290.0%	1	R.QNLLSQSHAYQQFLR.D
	TK090902_P14_mitoch_2D_step04.2778.2778.2	2.5924	0.3696	2061.35	1	3160.0%	1	R.AQTLPTSVVTITSESSPGKR.A
	TK090902_P14_mitoch_2D_step03.1728.1728.1	0.4701	0.0165	1026.53	28	1430.0%	1	R.NLHSKWLK.H
	TK090902_P14_mitoch_2D_step05.3201.3201.2	1.3931	0.3634	1979.81	1	3750.0%	1	K.TAGYPNVNIHNFTTSWR.D
	TK090902_P14_mitoch_2D_step13.3553.3553.2	1.036	0.0687	2612.86	4	2270.0%	1	K.KSNAHYNLQNAFNLAEQHLGLTK.L
	TK090902_P14_mitoch_2D_step14.3464.3464.2	1.5168	0.3524	2470.68	1	2250.0%	5	K.KHQILEQAVEDYAETVHQLSK.T
	TK090902_P14_mitoch_2D_step05.1911.1911.1	0.5832	0.0116	592.79	3	6670.0%	1	R.RFDR.K
	TK090902_P14_mitoch_2D_step03.2016.2016.1	1.3088	0.0613	1117.96	8	3330.0%	1	R.EGKLISDINK.A
	TK090902_P14_mitoch_2D_step10.1920.1920.1	1.173	0.181	1255.64	18	3500.0%	1	K.EKILSSDDYGK.D
	TK090902_P14_mitoch_2D_step04.1922.1922.1	0.99	0.0663	669.65	15	6000.0%	2	K.LTGLHK.M
	TK090902_P14_mitoch_2D_step07.1715.1715.1	0.9042	0.0703	685.45	1	7000.0%	1	R.LPKPTK.G
	TK090902_P14_mitoch_2D_step05.2993.2993.3	1.6645	0.2148	3002.65	2	2100.0%	1	R.LEEASLLHQFQADADDIDAWMLDILK.I
*	TK090902_P14_mitoch_2D_step10.3216.3216.3	2.75	0.4175	4014.68	1	2140.0%	2	K.HKDVAEEITNYRPTIDTLHEQASALPQAHAESPDVK.G

CATA_MOUSE

99.6%

242

39.7%

526

59634

7.9

(P24270) Catalase (EC 1.11.1.6)

	TK090902_P14_mitoch_2D_step04.2362.2362.1	2.1502	0.2776	1157.12	10	5000.0%	3	R.LCENIAGHLK.D
*	TK090902_P14_mitoch_2D_step05.2088.2088.2	3.3626	0.1748	1652.85	1	6920.0%	2	K.RFNSANEDNVTQVR.T
*	TK090902_P14_mitoch_2D_step10.2268.2268.2	2.4055	0.404	1703.35	1	5000.0%	5	K.NAIHTYTQAGSHMAAK.G
	TK090902_P14_mitoch_2D_step09.2563.2563.1	1.2677	0.0203	1313.16	2	5500.0%	4	K.RLCENIAGHLK.D
*	TK090902_P14_mitoch_2D_step01.1422.1422.1	2.3866	0.4675	1545.76	1	3850.0%	5	R.SALEHSVQCAVDVK.R
*	TK090902_P14_mitoch_2D_step03.2233.2233.3	3.039	0.4688	2830.91	1	1850.0%	3	R.ASQRPDVLTTGGGNPIGDKLNIMTAGSR.G
	TK090902_P14_mitoch_2D_step10.3113.3113.2	2.4549	0.463	1651.7	1	6920.0%	5	K.VWPHKDYPLIPVGK.L
	TK090902_P14_mitoch_2D_step06.2273.2273.1	1.6911	0.1835	1282.03	1	6500.0%	10	R.HMNGYGSHTFK.L
*	TK090902_P14_mitoch_2D_step04.3277.3277.2	1.3078	0.0243	1742.38	29	2670.0%	3	K.GAGAFGYFEVTHDITR.Y
	TK090902_P14_mitoch_2D_step04.1655.1655.1	1.0359	0.1647	838.08	9	4170.0%	3	R.NPQTHLK.D
	TK090902_P14_mitoch_2D_step13.0690.0690.2	0.9495	0.1885	994.8	3	5000.0%	1	K.RNPQTHLK.D
*	TK090902_P14_mitoch_2D_step10.2324.2324.1	1.6261	0.2333	986.02	2	5000.0%	1	K.VFEHIGKR.T
*	TK090902_P14_mitoch_2D_step02.2204.2204.2	3.2827	0.5795	1885.7	1	5830.0%	2	R.ASQRPDVLTTGGGNPIGDK.L
*	TK090902_P14_mitoch_2D_step09.3776.3776.3	1.2973	0.0721	4098.16	7	1250.0%	1	R.LAQEDPDYGLRDLFNAIANGNYPSWTFYIQVMTFK.E
	TK090902_P14_mitoch_2D_step03.2112.2112.1	1.2439	0.1353	831.35	1	5830.0%	1	K.VFEHIGK.R
*	TK090902_P14_mitoch_2D_step07.3707.3707.3	1.5908	0.1347	3901.79	54	1140.0%	1	R.VANYQRDGPMCMHDNQGGAPNYYPNSFSAPEQQR.S

Q9DCC6

99.6%

169

18.6%

291

32884

8.8

(Q9DCC6) 2010012D11Rik protein

	TK090902_P14_mitoch_2D_step05.2489.2489.1	1.7904	0.4207	926.69	1	6430.0%	4	R.LHLMPEGK.H
	TK090902_P14_mitoch_2D_step07.2460.2460.1	1.1989	0.1255	1394.85	11	3180.0%	2	K.VAVNGVHLHYQR.V
	TK090902_P14_mitoch_2D_step12.2997.2997.1	2.2224	0.344	1357.84	1	5500.0%	8	R.FHADFLLQHVK.G
	TK090902_P14_mitoch_2D_step11.3391.3391.2	3.6719	0.6164	1958.07	1	6250.0%	8	R.HLLPLVQCPTLIVHGEK.D
	TK090902_P14_mitoch_2D_step14.3337.3337.3	3.4311	0.5907	2635.41	1	3750.0%	1	R.HLLPLVQCPTLIVHGEKDPLVPR.F

COX2_MOUSE

99.6%

17.2%

227

25976

4.7

(P00405) Cytochrome c oxidase polypeptide II (EC 1.9.3.1)

*	TK090902_P14_mitoch_2D_step09.2121.2121.3	1.1248	0.182	4400.4	11	920.0%	9	R.LNQATVTSNRPGLFYGQCSEICGSNHSFMPIVLEMVPLK.Y

GPC4_MOUSE

99.6%

557

62616

6.3

(P51655) Glypican-4 precursor (K-glypican)

	TK090902_P14_mitoch_2D_step13.1960.1960.2	2.6719	0.6079	1583.95	1	5360.0%	3	K.VFQGCGPPKPLPAGR.I

STX4_MOUSE

99.6%

298

34165

6.1

(P70452) Syntaxin 4

	TK090902_P14_mitoch_2D_step12.3076.3076.2	2.9988	0.5611	1972.46	1	5000.0%	1	K.KTQHGVLSQQFVELINK.C

GR78_MOUSE

99.6%

1345

36.5%

655

72422

5.2

(P20029) 78 kDa glucose-regulated protein precursor (GRP 78) (Immunoglobulin heavy chain binding protein) (BIP)

	TK090902_P14_mitoch_2D_step08.2610.2610.2	4.3092	0.5529	1736.35	1	6670.0%	4	K.KTKPYIQVDIGGGQTK.T
	TK090902_P14_mitoch_2D_step08.3015.3015.2	3.3887	0.4927	2019.62	1	5880.0%	12	K.KVTHAVVTVPAYFNDAQR.Q
	TK090902_P14_mitoch_2D_step11.4393.4393.2	4.1114	0.6723	2003.22	1	6760.0%	32	R.GVPQIEVTFEIDVNGILR.V
	TK090902_P14_mitoch_2D_step01.3237.3237.2	0.9649	0.0237	2345.2	6	1670.0%	1	R.LIGDAAKNQLTSNPENTVFDAK.R
*	TK090902_P14_mitoch_2D_step05.3895.3895.2	1.6457	0.1139	2152.73	3	3530.0%	7	R.IEIESFFEGEDFSETLTR.A
	TK090902_P14_mitoch_2D_step01.3145.3145.1	1.4181	0.1969	1539.15	11	2690.0%	1	K.TFAPEEISAMVLTK.M
	TK090902_P14_mitoch_2D_step01.2563.2563.1	1.1878	0.0516	1400.33	1	4550.0%	1	K.ELEEIVQPIISK.L
	TK090902_P14_mitoch_2D_step04.2969.2969.2	1.6517	0.1535	1892.03	3	3440.0%	2	K.VTHAVVTVPAYFNDAQR.Q
	TK090902_P14_mitoch_2D_step03.4859.4859.1	1.2984	0.2235	1591.28	2	2860.0%	9	K.KSDIDEIVLVGGSTR.I
	TK090902_P14_mitoch_2D_step01.1703.1703.1	1.5529	0.1634	1568.9	1	3850.0%	2	R.ITPSYVAFTPEGER.L
	TK090902_P14_mitoch_2D_step11.4441.4441.3	1.2633	0.0281	4572.14	1	1370.0%	3	K.NILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQR.V
	TK090902_P14_mitoch_2D_step03.2451.2451.1	1.2443	0.0378	903.85	10	5000.0%	1	R.VMEHFIK.L
	TK090902_P14_mitoch_2D_step04.1688.1688.1	1.0776	0.1767	919.07	7	4290.0%	1	R.STMKPVQK.V
	TK090902_P14_mitoch_2D_step02.2897.2897.2	4.0856	0.6153	1977.03	1	6330.0%	1	K.IEWLESHQDADIEDFK.A
	TK090902_P14_mitoch_2D_step04.2627.2627.2	4.1262	0.6122	1968.99	1	5880.0%	2	K.KSQIFSTASDNQPTVTIK.V

Q9D1H8

99.6%

16.9%

118

12738

9.5

(Q9D1H8) 1110007K17Rik protein (Mitochondrial ribosomal protein L53)

*	TK090902_P14_mitoch_2D_step06.2753.2753.2	1.3174	0.1744	2205.57	1	2890.0%	1	R.GAHLTTQEMLSALASHIRDR.N
*	TK090902_P14_mitoch_2D_step11.3673.3673.2	4.4722	0.6429	1939.68	1	7060.0%	4	R.GAHLTTQEMLSALASHIR.D

Q99JA3

99.6%

578

65360

8.4

(Q99JA3) Neuronal development-associated protein (Neuronal development-associated protein 7)

	TK090902_P14_mitoch_2D_step15.1780.1780.1	0.9404	0.0686	1333.81	44	2000.0%	1	R.EGVSHYRLFPK.A
*	TK090902_P14_mitoch_2D_step13.3057.3057.2	3.2576	0.5625	1959.0	1	5620.0%	1	K.RPPDNEALPVPFLHAQR.Y
	TK090902_P14_mitoch_2D_step09.2783.2783.1	1.0507	0.0104	801.01	68	3570.0%	1	K.AGLSVLLK.A

GLSK_HUMAN

99.6%

669

73461

7.8

(O94925) Glutaminase, kidney isoform, mitochondrial precursor (EC 3.5.1.2) (GLS) (L-glutamine amidohydrolase) (K-glutaminase)

*	TK090902_P14_mitoch_2D_step13.3254.3254.2	4.4781	0.6796	2634.4	1	5250.0%	2	K.GIHFCHDLVSLCNFHNYDNLR.H
*	TK090902_P14_mitoch_2D_step03.3867.3867.2	1.0481	0.0416	2837.64	19	1800.0%	1	K.LFLNEDDKPHNPMVNAGAIVVTSLIK.Q

Q9ERI6

99.6%

334

36366

8.2

(Q9ERI6) Alcohol dehydrogenase PAN2 (RIKEN cDNA 3110030G19 gene)

	TK090902_P14_mitoch_2D_step10.3061.3061.2	2.4656	0.3797	1977.76	1	3530.0%	3	R.RLEGTNVTVNVLHPGIVR.T

Q9CYA0

99.6%

350

38220

4.6

(Q9CYA0) 5730592L21Rik protein

*	TK090902_P14_mitoch_2D_step12.3881.3881.2	2.0969	0.3352	1958.55	1	3930.0%	2	K.EHPNLFEWFCVHTLK.A

Q9R0B9

99.6%

737

84526

6.8

(Q9R0B9) Lysyl hydroxylase isoform 2

	TK090902_P14_mitoch_2D_step06.2372.2372.3	1.3583	0.0216	2873.37	9	1700.0%	1	K.IFTENIVEQPCPDVFWFPIFSER.A
	TK090902_P14_mitoch_2D_step10.2545.2545.1	1.7907	0.2489	1245.96	2	5500.0%	5	R.LTHLHEGLPVK.N

Q9ESL5

99.6%

254

27739

7.2

(Q9ESL5) HSCO protein (RIKEN cDNA 0610025L15 gene)

*	TK090902_P14_mitoch_2D_step10.2620.2620.2	1.3965	0.0028	1936.88	5	3120.0%	1	R.ESREAVLIDPVLETAHR.D
	TK090902_P14_mitoch_2D_step06.2170.2170.1	1.6846	0.1908	1114.03	1	5620.0%	3	K.TLYHSVHEK.I
*	TK090902_P14_mitoch_2D_step15.2483.2483.2	1.7982	0.0018	2350.88	2	2750.0%	2	K.LLYAVNTHCHADHITGTGVLR.S

THIM_HUMAN

99.6%

226

397

42039

8.3

(P42765) 3-ketoacyl-CoA thiolase, mitochondrial (EC 2.3.1.16) (Beta-ketothiolase) (Acetyl-CoA acyltransferase) (Mitochondrial 3-oxoacyl-CoA thiolase) (T1)

*	TK090902_P14_mitoch_2D_step10.2567.2567.1	1.9727	0.2388	1191.39	1	5560.0%	13	R.ITAHLVHELR.R
*	TK090902_P14_mitoch_2D_step07.2165.2165.1	1.2413	0.1317	716.92	2	5830.0%	1	K.KAGLSLK.D
*	TK090902_P14_mitoch_2D_step01.2570.2570.1	0.7556	0.0188	1124.53	9	4000.0%	2	R.TPFGAYGGLLK.D
*	TK090902_P14_mitoch_2D_step09.2031.2031.1	1.2297	0.0485	582.03	1	8750.0%	6	R.HVGLR.V

TMLH_MOUSE

99.6%

421

49610

8.3

(Q91ZE0) Trimethyllysine dioxygenase, mitochondrial precursor (EC 1.14.11.8) (Epsilon-trimethyllysine 2-oxoglutarate dioxygenase) (TML-alpha-ketoglutarate dioxygenase) (TML hydroxylase) (TML dioxygenase) (TMLD)

*	TK090902_P14_mitoch_2D_step06.2754.2754.3	1.2996	0.0111	2489.06	16	2050.0%	1	K.HEGTGGRTLLVDGFYAAQQVLQK.A
*	TK090902_P14_mitoch_2D_step09.3993.3993.2	2.6608	0.594	2406.13	1	3950.0%	2	K.TVHLDETMLFFTWPDGHVTR.Y

Q9D023

99.6%

127

14286

10.6

(Q9D023) 2610205H19Rik protein (RIKEN cDNA 2610205H19 gene)

	TK090902_P14_mitoch_2D_step14.1955.1955.2	2.7955	0.619	1391.59	1	7730.0%	1	K.LRPLYNHPAGPR.T
*	TK090902_P14_mitoch_2D_step15.2024.2024.2	2.0797	0.3674	1520.51	1	5420.0%	1	K.KLRPLYNHPAGPR.T

Q9D1J6

99.6%

196

22236

10.1

(Q9D1J6) 1110004O20Rik protein

*	TK090902_P14_mitoch_2D_step13.2533.2533.2	2.6069	0.5554	1999.75	1	5000.0%	2	R.AGLLPNHRPQLPEGCLPK.D

O35598

99.6%

749

83967

8.0

(O35598) Kuzbanian

*	TK090902_P14_mitoch_2D_step14.1433.1433.1	0.8385	0.0664	1315.94	3	2500.0%	1	R.RPPQPIQQPPR.Q
	TK090902_P14_mitoch_2D_step01.0064.0064.2	0.9673	0.0132	2204.44	107	1670.0%	1	K.QCSPSQGPCCTAQCAFKSK.S
	TK090902_P14_mitoch_2D_step13.2365.2365.3	3.3911	0.4905	3223.7	1	2240.0%	1	K.VSHITFAHEVGHNFGSPHDSGTECTPGESK.N

CES5_MOUSE

99.6%

20.0%

419

46306

7.9

(Q91WM2) Cat eye syndrome critical region protein 5 homolog precursor

*	TK090902_P14_mitoch_2D_step08.4588.4588.3	1.9166	0.0178	3105.02	2	1920.0%	1	K.LYAIGDNPMSDVYGANLFHQYLQMANR.G
*	TK090902_P14_mitoch_2D_step04.3303.3303.2	2.0604	0.494	1853.23	1	4690.0%	4	R.VPVVFVTNAGNILQHNK.A
*	TK090902_P14_mitoch_2D_step15.4012.4012.3	0.9992	0.0371	4552.97	14	1030.0%	1	R.ELPFHGHRDFSFSPGLLEASHIVHDVNEAVQLVFHQEGWA.-
*	TK090902_P14_mitoch_2D_step11.2337.2337.1	1.444	0.2112	993.01	1	7140.0%	1	R.ELPFHGHR.D

C2F2_MOUSE

99.6%

491

55949

7.9

(P33267) Cytochrome P450 2F2 (EC 1.14.14.-) (CYPIIF2) (Naphthalene dehydrogenase) (Naphthalene hydroxylase) (P450-NAH-2)

*	TK090902_P14_mitoch_2D_step08.3187.3187.3	1.5669	0.1311	2900.77	26	1670.0%	1	K.IMSSPWGEMYNIFPSVLDWIPGPHK.R
*	TK090902_P14_mitoch_2D_step06.3248.3248.2	3.8949	0.5395	2332.35	1	4720.0%	1	K.TPQEFNPEHFLDDNHSFKK.S
*	TK090902_P14_mitoch_2D_step15.2958.2958.3	1.0141	0.1457	4351.03	34	690.0%	1	K.GTDVITLLNTVHYDSDQFKTPQEFNPEHFLDDNHSFK.K

Q9DC69

99.6%

12.2%

377

42509

9.7

(Q9DC69) 1010001N11Rik protein

*	TK090902_P14_mitoch_2D_step13.2422.2422.1	2.9921	0.4606	1385.8	1	6360.0%	2	R.FIHVSHLNASMK.S
*	TK090902_P14_mitoch_2D_step13.1813.1813.2	1.2866	0.0623	2305.63	1	2630.0%	1	K.EVRSVFPEAIIIRPSDIFGR.E
*	TK090902_P14_mitoch_2D_step06.3129.3129.1	2.4311	0.4186	1521.99	1	4230.0%	8	K.AVQHSNVVINLIGR.E

ALD2_MOUSE

99.6%

315

35989

6.4

(P45377) Aldose reductase-related protein 2 (EC 1.1.1.21) (AR) (Aldehyde reductase) (Fibroblast growth factor regulated protein) (FR-1 protein)

*	TK090902_P14_mitoch_2D_step13.1872.1872.2	3.0766	0.5872	2210.56	1	5590.0%	1	K.HKPVTNQVECHPYLTQEK.L

2AAA_HUMAN

99.6%

588

65092

5.1

(P30153) Serine/threonine protein phosphatase 2A, 65 KDA regulatory subunit A, alpha isoform (PP2A, subunit A, PR65-alpha isoform) (PP2A, subunit A, R1-alpha isoform) (Medium tumor antigen-associated 61 KDA protein)

	TK090902_P14_mitoch_2D_step11.3185.3185.2	3.9465	0.4829	2215.89	1	4740.0%	4	R.AISHEHSPSDLEAHFVPLVK.R

Q61291

99.6%

129

4545

504769

5.4

(Q61291) AM2 receptor

*	TK090902_P14_mitoch_2D_step04.4922.4922.3	1.0289	0.1837	4574.44	10	510.0%	1	R.QTIIQGILIEHLYGLTVFENYLYATNSDNANTQQKTSVIR.V
	TK090902_P14_mitoch_2D_step04.2087.2087.3	1.2341	0.0289	2758.8	1	1820.0%	1	R.IFVCNRNGDTCVTLLDLELYNPK.G
	TK090902_P14_mitoch_2D_step10.3116.3116.1	3.1706	0.5512	1461.99	1	6360.0%	5	K.KPEHELFLVYGK.G
	TK090902_P14_mitoch_2D_step15.3059.3059.3	1.3251	0.1676	3183.89	61	1110.0%	1	R.ACACAHGMLAEDGASCREYAGYLLYSER.T
*	TK090902_P14_mitoch_2D_step09.2991.2991.2	2.0977	0.4972	2490.82	1	3330.0%	2	R.SLFPGHPHSAYEQTFQGDESVR.I
	TK090902_P14_mitoch_2D_step07.2719.2719.1	1.1091	0.0596	957.04	3	5000.0%	1	R.SGFSLGSDGK.S
	TK090902_P14_mitoch_2D_step12.2391.2391.3	1.8	0.0283	2888.84	109	1500.0%	1	R.VDIPQQPMGIIAVANDTNSCELSPCR.I
	TK090902_P14_mitoch_2D_step03.2930.2930.2	0.96	0.0060	2078.85	278	1390.0%	1	K.TLISGMIDEPHAIVVDPLR.G
	TK090902_P14_mitoch_2D_step03.4550.4550.2	0.9182	0.2265	2923.48	209	1090.0%	1	R.AIVVDPLNGWMYWTDWEEDPKDSR.R
*	TK090902_P14_mitoch_2D_step05.3009.3009.3	1.2537	0.0080	3300.27	77	1520.0%	1	R.VVLVNVSISWPNGISVDYQGGKLYWCDAR.M
	TK090902_P14_mitoch_2D_step12.2104.2104.3	1.1201	0.0455	2489.87	50	1880.0%	1	K.CEWLCLLSPSGPVCTCPNGKR.L
	TK090902_P14_mitoch_2D_step05.2761.2761.3	1.2602	0.0596	2996.69	1	1790.0%	1	R.AFINGTGVETVVSADLPNAHGLAVDWVSR.N
	TK090902_P14_mitoch_2D_step11.3014.3014.2	5.3358	0.6835	2066.87	1	6110.0%	8	K.NAVVQGLEQPHGLVVHPLR.G
	TK090902_P14_mitoch_2D_step05.2693.2693.2	2.558	0.4685	2922.66	1	3800.0%	5	R.SHACENDQYGKPGGCSDICLLANSHK.A
*	TK090902_P14_mitoch_2D_step14.2885.2885.2	1.1738	0.0053	1954.92	14	3000.0%	1	R.ILQEDFTCRAVNSSCR.A

Q9D1L0

99.6%

15.7%

153

15661

9.6

(Q9D1L0) Ethanol induced 6

*	TK090902_P14_mitoch_2D_step12.1681.1681.2	1.7462	0.3118	2156.27	1	3040.0%	4	R.RAPAAQPPAAAAPSAVGSPAAAPR.Q

MLEV_MOUSE

99.6%

45.1%

5085

9.1

(P09542) Myosin light chain 1, slow-twitch muscle B/ventricular isoform (Fragment)

	TK090902_P14_mitoch_2D_step06.1986.1986.2	2.4079	0.5607	2094.82	1	3410.0%	4	K.AAPAPAAAPAAAPAAAPEPERPK.E

DHE3_MOUSE

99.6%

291

39.8%

558

61337

8.0

(P26443) Glutamate dehydrogenase, mitochondrial precursor (EC 1.4.1.3) (GDH)

	TK090902_P14_mitoch_2D_step06.4197.4197.2	1.2063	0.2697	2743.82	1	1520.0%	1	R.NIMVIPDLYLNAGGVTVSYFEWLK.N
	TK090902_P14_mitoch_2D_step03.2101.2101.1	1.3175	0.0902	827.7	4	5000.0%	1	K.AGVKINPK.N
	TK090902_P14_mitoch_2D_step02.3983.3983.2	1.6644	0.2167	3034.38	2	2040.0%	4	R.GVFHGIENFINEASYMSILGMTPGFGDK.T
	TK090902_P14_mitoch_2D_step04.1636.1636.1	0.4825	0.0297	546.25	39	3750.0%	1	K.SNAPR.V
	TK090902_P14_mitoch_2D_step13.3776.3776.3	2.2444	0.3586	4018.61	1	1390.0%	6	R.EMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGR.I
	TK090902_P14_mitoch_2D_step13.3241.3241.2	1.5104	0.1435	1897.45	1	3670.0%	5	R.IIKPCNHVLSLSFPIR.R
	TK090902_P14_mitoch_2D_step06.2845.2845.1	0.69	0.0055	1583.06	14	1670.0%	1	R.RDDGSWEVIEGYR.A
*	TK090902_P14_mitoch_2D_step07.3981.3981.2	1.1181	0.0685	2852.03	1	1720.0%	1	R.LGEALLLSRAGPAALGSAAADSAALLGWAR.G
	TK090902_P14_mitoch_2D_step05.3293.3293.2	2.879	0.6158	1752.71	1	5330.0%	6	K.TFVVQGFGNVGLHSMR.Y
	TK090902_P14_mitoch_2D_step02.3093.3093.2	1.2721	0.0439	1921.11	1	4000.0%	1	R.DSNYHLLMSVQESLER.K
	TK090902_P14_mitoch_2D_step05.4844.4844.3	1.1095	0.0040	4599.87	22	770.0%	1	R.EMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGR.G
	TK090902_P14_mitoch_2D_step01.1541.1541.1	1.1661	0.3513	1220.12	17	2730.0%	1	K.CAVVDVPFGGAK.A
	TK090902_P14_mitoch_2D_step09.3072.3072.1	1.9647	0.1445	1199.26	1	6000.0%	13	K.LQHGSILGFPK.A

Q91WP2

99.6%

12.6%

1023

116449

6.8

(Q91WP2) Hypothetical 116.4 kDa protein

	TK090902_P14_mitoch_2D_step08.3499.3499.3	2.0367	0.3894	2816.45	1	2100.0%	2	R.QNGIVLLLPHGMEGMGPEHSSARPER.F
	TK090902_P14_mitoch_2D_step13.1410.1410.1	1.4251	0.1859	1501.16	1	4550.0%	3	R.HHVLHDQNVDKR.T
	TK090902_P14_mitoch_2D_step13.1350.1350.1	1.0963	0.0171	1344.16	1	3500.0%	5	R.HHVLHDQNVDK.R
	TK090902_P14_mitoch_2D_step04.2166.2166.1	1.5451	0.0637	998.36	9	5000.0%	2	K.THLTELQR.F
*	TK090902_P14_mitoch_2D_step04.2815.2815.2	1.5216	0.1695	2197.61	1	3500.0%	1	R.SSLATMAHAQSLVEAQPNVDK.L
*	TK090902_P14_mitoch_2D_step12.4015.4015.3	0.9987	0.0617	4262.38	5	970.0%	1	K.HWLDSPWPGFFTLDGQPRSMTCPSTGLEEDVLFHIGK.V
*	TK090902_P14_mitoch_2D_step01.2095.2095.1	0.9879	0.3762	1533.11	6	2500.0%	1	R.FLDTAFDLDAFKK.F
*	TK090902_P14_mitoch_2D_step08.2988.2988.2	1.4795	0.0759	2383.08	8	2890.0%	1	K.THLTELQRFLDTAFDLDAFK.K
	TK090902_P14_mitoch_2D_step03.2198.2198.1	0.9108	0.0092	1402.79	4	3000.0%	1	K.NQGYYDYVKPR.L
	TK090902_P14_mitoch_2D_step10.2259.2259.1	1.6968	0.0325	1127.78	3	5620.0%	3	K.KTHLTELQR.F

A2HS_MOUSE

99.6%

18.8%

345

37326

6.5

(P29699) Alpha-2-HS-glycoprotein precursor (Fetuin-A) (Countertrypin)

*	TK090902_P14_mitoch_2D_step11.1918.1918.1	1.2918	0.0269	959.91	30	2860.0%	1	K.QVLNQIDK.V
*	TK090902_P14_mitoch_2D_step09.1904.1904.1	0.7062	0.0134	751.6	9	3000.0%	1	K.QDGQFR.V
*	TK090902_P14_mitoch_2D_step10.4923.4923.2	0.8565	0.1579	2928.11	255	960.0%	1	R.TYHDLRHAFSPVASVESASGETLHSPK.V
*	TK090902_P14_mitoch_2D_step04.4199.4199.2	4.0067	0.6496	2548.03	1	4350.0%	7	R.AQNVPLPVSTLVEFVIAATDCTAK.E
*	TK090902_P14_mitoch_2D_step07.2859.2859.2	4.449	0.5991	2140.45	1	6250.0%	2	R.HAFSPVASVESASGETLHSPK.V

KCRB_MOUSE

99.6%

381

42713

5.7

(Q04447) Creatine kinase, B chain (EC 2.7.3.2) (B-CK)

	TK090902_P14_mitoch_2D_step01.2110.2110.1	1.0671	0.3246	1575.94	1	3330.0%	1	R.GFCLPPHCSRGER.R
*	TK090902_P14_mitoch_2D_step11.3181.3181.2	2.0102	0.3898	2459.54	1	3250.0%	3	K.LRFPAEDEFPDLSSHNNHMAK.V
*	TK090902_P14_mitoch_2D_step06.1960.1960.1	1.0833	0.04	1271.9	21	3180.0%	1	R.AGVHIKLPHLGK.H

COXS_MOUSE

99.6%

32.3%

6653

7.7

(P56394) Cytochrome c oxidase copper chaperone

	TK090902_P14_mitoch_2D_step06.2228.2228.1	2.5876	0.5111	1518.92	1	5830.0%	4	K.GEEHCGHLIEAHK.E
	TK090902_P14_mitoch_2D_step06.2613.2613.2	2.5793	0.5885	2348.87	1	4470.0%	2	R.DACIIEKGEEHCGHLIEAHK.E

CTN2_MOUSE

99.6%

953

105298

5.9

(Q61301) Alpha-2 catenin (Alpha-catenin related protein) (Alpha N-catenin)

	TK090902_P14_mitoch_2D_step06.4208.4208.2	0.9309	0.0754	2868.18	10	1540.0%	1	R.MAATQIDSLCPQVINAALTLAARPQSK.V
	TK090902_P14_mitoch_2D_step10.3535.3535.2	4.7709	0.0076	2087.96	1	6940.0%	2	K.KAHVLAASVEQATQNFLEK.G

Q91W48

99.6%

511

57230

6.2

(Q91W48) Archain 1

*	TK090902_P14_mitoch_2D_step12.2384.2384.1	2.4148	0.4448	1591.87	1	5770.0%	2	K.VHAPPINMESVHMK.I

Q9JK16

99.6%

19.2%

421

46827

6.6

(Q9JK16) Von Willebrand factor (Fragment)

*	TK090902_P14_mitoch_2D_step14.2845.2845.2	3.0615	0.5061	1629.81	1	6670.0%	1	K.KVIVIPVGIGPHASLK.Q
	TK090902_P14_mitoch_2D_step10.3267.3267.2	2.0628	0.3976	2628.81	2	2610.0%	5	K.RLPGDIQVVPIGVGPHANMQELER.I
	TK090902_P14_mitoch_2D_step07.3203.3203.2	1.424	0.0714	2347.09	1	3250.0%	2	K.IDRPEASHITLLLTASQEPPR.M
	TK090902_P14_mitoch_2D_step10.3415.3415.2	0.9193	0.0232	2143.45	2	2630.0%	1	R.ITSQIKYTGSQVASTSEVLK.Y
*	TK090902_P14_mitoch_2D_step09.3304.3304.1	2.1119	0.4215	1501.14	1	4290.0%	4	K.VIVIPVGIGPHASLK.Q

Q9DAU7

99.6%

19.0%

174

18032

5.3

(Q9DAU7) 1600023A02Rik protein (WAP domain protein HE4)

*	TK090902_P14_mitoch_2D_step10.2312.2312.3	3.5854	0.5231	3323.89	1	2340.0%	2	K.LSETGTTTQSAGLDHTTKPPGGQVSTKPPAVTR.E

Q99LE7

99.6%

378

41782

7.5

(Q99LE7) Similar to paxillin (Fragment)

	TK090902_P14_mitoch_2D_step10.2776.2776.2	4.2633	0.5634	2413.31	1	5280.0%	3	K.TWHPEHFVCTHCQEEIGSR.N
	TK090902_P14_mitoch_2D_step13.3577.3577.2	1.3014	0.2887	2924.38	1	3040.0%	1	R.TWHPEHFFCAQCGAFFGPEGFHEK.D

Q91WP8

99.6%

15.4%

469

50525

8.9

(Q91WP8) Similar to MIPP65 protein

*	TK090902_P14_mitoch_2D_step10.3743.3743.2	2.2764	0.3726	2566.16	1	3500.0%	2	K.NLQHHDYNTYTFLDLNLDLSK.F
*	TK090902_P14_mitoch_2D_step13.2294.2294.3	3.1991	0.4617	3221.72	1	2500.0%	1	K.VRVPTQPTSGPVPTTQIQEASAEHPPAVAPR.K
*	TK090902_P14_mitoch_2D_step15.2234.2234.2	1.2207	0.0152	1943.97	12	2630.0%	1	K.GKAGSSKPEASRPLTTGAPK.I

MUTA_MOUSE

99.6%

748

82965

7.1

(P16332) Methylmalonyl-CoA mutase, mitochondrial precursor (EC 5.4.99.2) (MCM)

	TK090902_P14_mitoch_2D_step04.3045.3045.2	3.082	0.579	2478.29	1	4500.0%	1	R.AHCQTSGWSLTEQDPYNNIVR.T
	TK090902_P14_mitoch_2D_step01.1959.1959.1	1.0911	0.0484	913.92	53	4290.0%	1	K.TLVPELIK.E
*	TK090902_P14_mitoch_2D_step10.3497.3497.2	3.1951	0.6147	2654.71	1	3860.0%	2	K.GKNPEDLIWHTPEGISIKPLYSR.A
	TK090902_P14_mitoch_2D_step12.3049.3049.2	1.2175	0.0736	1671.71	4	3670.0%	1	K.AGQQGLSVAFDLATHR.G

IDHP_HUMAN

99.6%

452

50909

8.7

(P48735) Isocitrate dehydrogenase [NADP], mitochondrial precursor (EC 1.1.1.42) (Oxalosuccinate decarboxylase) (IDH) (NADP+-specific ICDH) (IDP) (ICD-M)

	TK090902_P14_mitoch_2D_step11.3055.3055.3	1.7565	0.2116	4336.66	4	1310.0%	1	K.SSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGK.T
	TK090902_P14_mitoch_2D_step11.3933.3933.2	3.0746	0.4877	1877.81	1	5310.0%	9	K.GRPTSTNPIASIFAWTR.G

PDI_MOUSE

99.6%

188

8334

42.4%

509

57144

4.9

(P09103) Protein disulfide isomerase precursor (PDI) (EC 5.3.4.1) (Prolyl 4-hydroxylase beta subunit) (Cellular thyroid hormone binding protein) (P55) (ERP59)

	TK090902_P14_mitoch_2D_step04.4117.4117.3	1.5547	0.0491	3755.47	69	1290.0%	1	K.KFLESGGQDGAGDDEDLDLEEALEPDMEEDDDQK.A
	TK090902_P14_mitoch_2D_step01.3290.3290.1	1.4047	0.227	967.14	19	4290.0%	2	R.ILEFFGLK.K
	TK090902_P14_mitoch_2D_step04.4786.4786.1	0.7513	0.1379	1468.13	242	1540.0%	1	K.NGDTASPKEYTAGR.E
	TK090902_P14_mitoch_2D_step01.2023.2023.1	1.0406	0.0267	1208.2	6	4440.0%	1	R.LITLEEEMTK.Y
	TK090902_P14_mitoch_2D_step10.4109.4109.2	3.3767	0.5707	3146.25	1	2670.0%	10	K.RTGPAATTLSDTAAAESLVDSSEVTVIGFFK.D
	TK090902_P14_mitoch_2D_step14.4629.4629.2	0.7671	0.0241	2990.22	39	1210.0%	14	R.TGPAATTLSDTAAAESLVDSSEVTVIGFFK.D
	TK090902_P14_mitoch_2D_step12.2493.2493.2	2.4647	0.5114	2406.02	1	3950.0%	1	K.IKPHLMSQEVPEDWDKQPVK.V
	TK090902_P14_mitoch_2D_step03.3387.3387.2	2.0173	0.3834	1968.27	1	3120.0%	7	K.HNQLPLVIEFTEQTAPK.I
	TK090902_P14_mitoch_2D_step01.2555.2555.1	1.0485	0.0239	749.01	39	6000.0%	1	K.LLDFIK.H
	TK090902_P14_mitoch_2D_step03.3285.3285.1	1.6652	0.1297	1084.44	4	5000.0%	65	K.THILLFLPK.S
	TK090902_P14_mitoch_2D_step09.2600.2600.1	1.4829	0.2434	930.73	1	5710.0%	7	K.VHSFPTLK.F
	TK090902_P14_mitoch_2D_step03.3177.3177.2	2.7439	0.4715	1837.57	1	6070.0%	60	K.ILFIFIDSDHTDNQR.I
	TK090902_P14_mitoch_2D_step04.2022.2022.1	1.0736	0.2097	963.25	4	5830.0%	2	K.ITEFCHR.F
	TK090902_P14_mitoch_2D_step06.2553.2553.1	1.8775	0.2492	1347.99	1	5000.0%	6	K.KSNFEEALAAHK.Y
	TK090902_P14_mitoch_2D_step07.2827.2827.2	3.0279	0.3983	1954.65	1	5330.0%	8	K.IKPHLMSQEVPEDWDK.Q
	TK090902_P14_mitoch_2D_step12.3840.3840.2	0.6393	0.0336	2643.21	426	620.0%	1	K.QFLLAAEAIDDIPFGITSNSGVFSK.Y

SAP_MOUSE

99.6%

557

61422

5.2

(Q61207) Sulfated glycoprotein 1 precursor (SGP-1) (Prosaposin)

	TK090902_P14_mitoch_2D_step01.1425.1425.1	0.9813	0.083	1313.84	1	3000.0%	1	K.GCSFLPDPYQK.Q
*	TK090902_P14_mitoch_2D_step14.2280.2280.3	1.0448	0.0796	3222.65	12	930.0%	1	K.IPEVDMARVVAPFMSNIPLLLYPQDHPR.S
*	TK090902_P14_mitoch_2D_step08.3191.3191.1	3.4666	0.4321	1501.04	1	6820.0%	9	K.KLVLYLEHNLEK.N

Q9JII6

99.6%

324

36456

7.4

(Q9JII6) Alcohol dehydrogenase [NADP+] (EC 1.1.1.2) (Aldehyde reductase)

	TK090902_P14_mitoch_2D_step06.2281.2281.1	1.6267	0.2076	1299.9	1	5500.0%	1	K.HHPEDVEPALR.K
*	TK090902_P14_mitoch_2D_step13.3549.3549.3	4.0827	0.5819	4114.17	1	2140.0%	1	R.QIDDVLSVASVRPAVLQVECHPYLAQNELIAHCHAR.G

DHAM_MOUSE

99.6%

686

32.6%

519

56538

7.6

(P47738) Aldehyde dehydrogenase, mitochondrial precursor (EC 1.2.1.3) (ALDH class 2) (AHD-M1) (ALDHI) (ALDH-E2)

	TK090902_P14_mitoch_2D_step01.3481.3481.1	1.6517	0.1517	1407.07	2	4090.0%	2	K.EEIFGPVMQILK.F
*	TK090902_P14_mitoch_2D_step04.2883.2883.2	2.0744	0.3352	2378.84	1	3100.0%	1	R.KTFPTVNPSTGEVICQVAEGNK.E
*	TK090902_P14_mitoch_2D_step08.3587.3587.2	3.8437	0.6033	2446.05	1	3700.0%	5	K.VAFTGSTEVGHLIQVAAGSSNLKR.V
*	TK090902_P14_mitoch_2D_step03.3034.3034.2	1.3948	0.1153	1776.85	4	3460.0%	1	R.TFVQENVYDEFVER.S
	TK090902_P14_mitoch_2D_step01.2963.2963.1	1.3083	0.2344	1534.15	1	2920.0%	1	K.TIPIDGDFFSYTR.H
	TK090902_P14_mitoch_2D_step05.4204.4204.2	0.7635	0.0062	3161.54	2	1850.0%	1	R.TYLAALETLDNGKPYVISYLVDLDMVLK.C
*	TK090902_P14_mitoch_2D_step06.2669.2669.1	1.5289	0.0646	836.72	12	5000.0%	6	K.KILGYIK.S
	TK090902_P14_mitoch_2D_step01.2313.2313.1	1.4192	0.1813	1373.36	1	3850.0%	6	K.LGPALATGNVVVMK.V
*	TK090902_P14_mitoch_2D_step08.3652.3652.2	4.2553	0.5019	2290.32	1	5000.0%	24	K.VAFTGSTEVGHLIQVAAGSSNLK.R
*	TK090902_P14_mitoch_2D_step01.2891.2891.1	1.9526	0.3319	1473.18	1	5420.0%	1	R.GYFIQPTVFGDVK.D
	TK090902_P14_mitoch_2D_step01.1252.1252.1	0.914	0.1502	903.02	19	3570.0%	1	K.TIEEVVGR.A
	TK090902_P14_mitoch_2D_step02.2628.2628.2	1.829	0.4777	1601.69	1	4620.0%	1	R.ELGEYGLQAYTEVK.T

COXD_MOUSE

99.6%

29.9%

10749

9.1

(P43023) Cytochrome c oxidase polypeptide VIa-heart, mitochondrial precursor (EC 1.9.3.1) (COXVIAH)

*	TK090902_P14_mitoch_2D_step15.3034.3034.3	3.9909	0.391	3280.07	1	2410.0%	1	R.TKPFAWGDGNHTLFHNPHVNPLPTGYEHP.-

HS47_MOUSE

99.6%

200

27.3%

417

46590

8.8

(P19324) 47 kDa heat shock protein precursor (Collagen-binding protein 1) (Serine protease inhibitor J6)

	TK090902_P14_mitoch_2D_step01.0279.0279.1	0.8232	0.0658	799.78	4	6430.0%	1	K.AVAISLPK.G
*	TK090902_P14_mitoch_2D_step02.4044.4044.2	1.9349	0.403	2582.24	1	2600.0%	1	K.DQAVENILLSPLVVASSLGLVSLGGK.A
	TK090902_P14_mitoch_2D_step01.2495.2495.1	2.2746	0.3326	1340.26	1	5000.0%	5	K.HLAGLGLTEAIDK.N
	TK090902_P14_mitoch_2D_step01.0039.0039.1	1.1983	0.0245	1225.18	4	3500.0%	1	K.GVVEVTHDLQK.H
*	TK090902_P14_mitoch_2D_step04.3146.3146.2	1.291	0.2495	1993.36	4	2940.0%	1	K.RSALQSINEWASQTTDGK.L
	TK090902_P14_mitoch_2D_step12.3416.3416.3	2.5323	0.4581	1987.89	1	3750.0%	1	K.LSSLIILMPHHVEPLER.L
	TK090902_P14_mitoch_2D_step14.2553.2553.2	1.697	0.1932	2245.78	1	3000.0%	1	-.MRSLLLGTLCLLAVALAAEVK.K

OPA1_MOUSE

99.6%

960

111339

7.5

(P58281) Dynamin-like 120 kDa protein, mitochondrial precursor (Large GTP binding protein) (LargeG)

	TK090902_P14_mitoch_2D_step10.2943.2943.1	2.1805	0.471	1536.94	1	4230.0%	6	K.VTLSEGPHHVALFK.D
	TK090902_P14_mitoch_2D_step06.2017.2017.3	1.166	0.072	1784.14	2	2500.0%	1	R.HFLKTALNHCNLCR.R

UCR1_MOUSE

99.6%

480

52769

6.1

(Q9CZ13) Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial precursor (EC 1.10.2.2)

	TK090902_P14_mitoch_2D_step04.3237.3237.2	3.1714	0.4775	2094.69	1	5260.0%	5	R.MVLAAAGGVEHQQLLDLAQK.H
	TK090902_P14_mitoch_2D_step07.2909.2909.1	1.4683	0.2872	1259.04	1	4440.0%	5	R.RIPLAEWESR.I
*	TK090902_P14_mitoch_2D_step09.2371.2371.3	1.8486	0.0056	2781.47	41	1770.0%	1	K.DLPKVVELLADIVQNSSLEDSQIEK.E
*	TK090902_P14_mitoch_2D_step03.1725.1725.1	0.9883	0.0992	786.61	15	5000.0%	1	K.HLSSVSR.V

VINE_MOUSE

99.6%

733

82349

9.2

(Q9R1Z8) Vinexin (SH3-containing adapter molecule-1) (SCAM-1) (SH3 domain-containing protein SH3P3)

*	TK090902_P14_mitoch_2D_step08.2423.2423.1	1.6325	0.1972	1318.01	4	4440.0%	1	R.KVNEHWYEGR.I
*	TK090902_P14_mitoch_2D_step09.3120.3120.3	2.5249	0.3907	4108.47	1	1780.0%	3	R.LCDDGPQLPASPNPTTTAHLSSHSHPSSIPVDPTDWGGR.T
*	TK090902_P14_mitoch_2D_step02.3013.3013.1	0.7221	0.0325	1502.58	20	2920.0%	1	R.SAFPFPITLQEPR.S

HYEP_MOUSE

99.6%

10.8%

455

52576

8.7

(Q9D379) Epoxide hydrolase 1 (EC 3.3.2.3) (Microsomal epoxide hydrolase) (Epoxide hydratase)

	TK090902_P14_mitoch_2D_step13.3070.3070.3	1.1601	0.0025	3389.63	142	1070.0%	1	R.TPKPLLMVHGWPGSFYEFYKIIPLLTDPK.T
	TK090902_P14_mitoch_2D_step15.3120.3120.2	3.5615	0.5943	2255.55	1	4210.0%	2	K.IEGLDIHFIHVKPPQLPSGR.T

ETFB_MOUSE

99.6%

30.2%

252

27310

8.4

(Q9DCW4) Electron transfer flavoprotein beta-subunit (Beta-ETF)

*	TK090902_P14_mitoch_2D_step01.2766.2766.1	0.6535	0.0602	1161.81	126	2220.0%	1	K.EKVDLLFLGK.Q
*	TK090902_P14_mitoch_2D_step03.3113.3113.2	1.305	0.2498	2145.6	6	2000.0%	3	R.GIHVEIPGAQAESLGPLQVAR.V
*	TK090902_P14_mitoch_2D_step01.2944.2944.1	1.1636	0.147	905.46	5	5000.0%	1	K.VDLLFLGK.Q
*	TK090902_P14_mitoch_2D_step04.2075.2075.1	1.5169	0.0235	716.98	1	8000.0%	3	K.KIEVVK.A
*	TK090902_P14_mitoch_2D_step13.1926.1926.3	1.1485	0.0401	2835.65	87	1400.0%	1	K.EIIAVSCGPSQCQETIRTALAMGADR.G
*	TK090902_P14_mitoch_2D_step05.1724.1724.1	0.7756	0.0404	571.52	1	7500.0%	1	K.EVGRI.-
*	TK090902_P14_mitoch_2D_step04.2766.2766.1	1.0954	0.1822	949.97	29	4290.0%	3	K.RVIDFAVK.I

MPPA_MOUSE

99.6%

19.5%

524

58279

6.8

(Q9DC61) Mitochondrial processing peptidase alpha subunit, mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP) (P-55)

*	TK090902_P14_mitoch_2D_step06.3813.3813.3	4.4164	0.5363	2798.1	1	3460.0%	2	R.GKPAVAALGDLTDLPTYEHIQAALSSR.N
	TK090902_P14_mitoch_2D_step13.2670.2670.1	1.5646	0.1565	1382.09	1	6000.0%	1	R.KLPHELCTLIR.N
	TK090902_P14_mitoch_2D_step02.3955.3955.3	1.0373	0.0481	4456.21	2	970.0%	1	R.LYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPR.Q
*	TK090902_P14_mitoch_2D_step06.2550.2550.3	1.4512	0.1999	3049.43	1	1540.0%	1	K.GLDTVVDLLADVVLHPRLTDEEIEMTR.M

Q9JJL8

99.6%

518

58302

7.9

(Q9JJL8) Seryl-tRNA synthetase, mitochondrial precursor (EC 6.1.1.11)

*	TK090902_P14_mitoch_2D_step06.2665.2665.3	1.408	0.0455	3072.11	90	1540.0%	1	R.LYIMFETETGELQFAHTVNATACAVPR.V
*	TK090902_P14_mitoch_2D_step09.4007.4007.2	1.7604	0.3065	2295.5	1	3160.0%	1	R.KGELRPADLPAIISTWQELR.Q
*	TK090902_P14_mitoch_2D_step14.2474.2474.2	3.355	0.5899	2359.66	1	4250.0%	2	R.ITAPTHVPLQYIGPNQPQKPR.L

TBA1_HUMAN

99.6%

20.2%

451

50152

5.1

(P05209) Tubulin alpha-1 chain (Alpha-tubulin 1) (P05209) Tubulin alpha-1 chain (Alpha-tubulin 1)

	TK090902_P14_mitoch_2D_step07.3472.3472.2	2.6416	0.5681	1758.89	1	5000.0%	4	R.IHFPLATYAPVISAEK.A
	TK090902_P14_mitoch_2D_step01.0991.0991.1	1.2909	0.0894	1015.56	219	3330.0%	1	K.DVNAAIATIK.T
	TK090902_P14_mitoch_2D_step10.3783.3783.3	3.4621	0.5432	4302.34	1	1960.0%	2	R.ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK.T
	TK090902_P14_mitoch_2D_step03.3322.3322.2	0.9555	0.2344	2333.5	1	2370.0%	1	R.AFVHWYVGEGMEEGEFSEAR.E
	TK090902_P14_mitoch_2D_step04.1978.1978.1	1.1372	0.2269	776.24	9	5000.0%	3	R.GHYTIGK.E

Q91VA7

99.6%

142

21.9%

384

42195

8.6

(Q91VA7) Tumor-related protein (Unknown) (Protein for MGC:6572)

	TK090902_P14_mitoch_2D_step09.3399.3399.1	2.5142	0.427	1385.21	1	6360.0%	6	R.KLDLFANVVHVK.S
	TK090902_P14_mitoch_2D_step05.3140.3140.1	1.4942	0.2243	1207.87	1	5000.0%	1	R.HNNLDLVIIR.E
	TK090902_P14_mitoch_2D_step02.2893.2893.2	2.4407	0.4958	1831.13	1	5000.0%	5	R.HLNLEYHSSMIADAVK.K
	TK090902_P14_mitoch_2D_step07.2111.2111.1	1.0874	0.0416	984.96	1	5620.0%	6	R.HPFAQAVGR.N
*	TK090902_P14_mitoch_2D_step13.2052.2052.1	2.2955	0.5593	1112.76	1	6000.0%	2	K.SVIGHLHPHGG.-
*	TK090902_P14_mitoch_2D_step13.2722.2722.2	2.4952	0.4263	1465.29	1	5450.0%	1	K.TRHNNLDLVIIR.E
*	TK090902_P14_mitoch_2D_step07.3555.3555.2	3.3753	0.6084	2787.66	1	3700.0%	6	K.EHHLSEVQNMASEEKLEQVLSSMK.E

ANK1_MOUSE

99.6%

118

1862

204242

6.6

(Q02357) Ankyrin 1 (Erythrocyte ankyrin)

	TK090902_P14_mitoch_2D_step07.2968.2968.2	1.6461	0.4318	2064.43	1	2630.0%	5	R.GGSPHSPAWNGYTPLHIAAK.Q
	TK090902_P14_mitoch_2D_step09.1510.1510.1	0.5969	0.0111	460.18	4	5000.0%	1	K.GKVR.L
	TK090902_P14_mitoch_2D_step15.3122.3122.3	4.5263	0.5072	3875.33	1	2710.0%	1	R.LAELLLEHDAHPNAAGKNGLTPLHVAVHHNNLDIVK.L
	TK090902_P14_mitoch_2D_step08.2998.2998.2	1.3049	0.3804	2529.58	2	2710.0%	7	K.LLLENGASPNLATTAGHTPLHTAAR.E
	TK090902_P14_mitoch_2D_step11.3018.3018.2	1.6	0.2693	2095.08	1	3330.0%	5	K.NGLTPLHVAVHHNNLDIVK.L
	TK090902_P14_mitoch_2D_step14.3888.3888.3	4.2802	0.6326	2832.01	1	2980.0%	1	R.IIALGPTGAQFLSPVIVEIPHFASHGR.G
	TK090902_P14_mitoch_2D_step04.2002.2002.1	1.9011	0.3816	1483.64	1	5000.0%	1	K.AKDDQTPLHCAAR.I
	TK090902_P14_mitoch_2D_step11.2735.2735.3	0.9396	0.1176	3515.3	14	700.0%	1	R.DSGEGDTTSLRLLCSVIGGTDQAQWEDITGTTK.L
	TK090902_P14_mitoch_2D_step08.3008.3008.2	4.3332	0.6315	1964.86	1	6390.0%	1	K.KGNTALHIAALAGQDEVVR.E
	TK090902_P14_mitoch_2D_step03.2523.2523.3	1.2678	0.0122	2711.55	23	1930.0%	1	R.EHLGLSWAELARELQFSVEDINR.I
	TK090902_P14_mitoch_2D_step06.2365.2365.1	1.9884	0.3665	1513.22	2	4170.0%	1	R.TKDELTPLHCAAR.N
	TK090902_P14_mitoch_2D_step15.2867.2867.3	0.9332	0.0299	4281.86	197	900.0%	1	K.EYDEDSLIPSSPATETSDNISPVASPVHTGFLVSFMVDAR.G
	TK090902_P14_mitoch_2D_step01.1137.1137.1	0.9303	0.0851	1326.85	26	3180.0%	1	K.LDQVVESPAIPR.I

DLDH_MOUSE

99.6%

181

33.8%

509

54212

7.9

(O08749) Dihydrolipoamide dehydrogenase, mitochondrial precursor (EC 1.8.1.4)

*	TK090902_P14_mitoch_2D_step06.3677.3677.2	1.3198	0.1955	2172.98	1	3330.0%	1	R.RPFTQNLGLEELGIELDPK.G
	TK090902_P14_mitoch_2D_step11.2665.2665.2	2.9384	0.4936	1527.55	1	7080.0%	7	R.VCHAHPTLSEAFR.E
*	TK090902_P14_mitoch_2D_step04.2335.2335.1	1.2152	0.3224	959.08	1	6880.0%	4	K.VVHVNGFGK.I
	TK090902_P14_mitoch_2D_step04.3309.3309.1	1.0712	0.1848	1130.25	12	3000.0%	7	K.ALTGGIAHLFK.Q
	TK090902_P14_mitoch_2D_step04.3866.3866.2	2.5434	0.433	1980.5	1	4440.0%	1	K.IPNIYAIGDVVAGPMLAHK.A
	TK090902_P14_mitoch_2D_step11.2567.2567.2	3.5042	0.5331	1759.0	1	7140.0%	5	K.ALLNNSHYYHMAHGK.D
*	TK090902_P14_mitoch_2D_step01.3005.3005.1	1.4334	0.4968	1465.31	1	4620.0%	1	R.EANLAAAFGKPINF.-
*	TK090902_P14_mitoch_2D_step01.1454.1454.1	1.0666	5.0E-4	913.37	51	4290.0%	1	R.GIEIPEVR.L
	TK090902_P14_mitoch_2D_step06.4521.4521.3	1.3909	0.2167	4246.66	2	1250.0%	2	K.AEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGK.S
*	TK090902_P14_mitoch_2D_step04.4203.4203.2	2.8926	0.5491	2532.06	1	4380.0%	3	R.LGADVTAVEFLGHVGGIGIDMEISK.N

Q9D9S0

99.6%

15.7%

268

29658

6.0

(Q9D9S0) 1700030F05Rik protein

*	TK090902_P14_mitoch_2D_step13.3008.3008.2	4.2228	0.4837	1725.26	1	6790.0%	1	R.SRPVLQVFVHGESLR.S
*	TK090902_P14_mitoch_2D_step14.3858.3858.2	1.0098	0.2292	3121.08	5	1730.0%	1	K.LEDVADMNYFSVNNEGEICIKGNNVFK.G

FKB2_MOUSE

99.6%

14.3%

140

15344

8.9

(P45878) FK506-binding protein precursor (FKBP-13) (Peptidyl-prolyl cis-trans isomerase) (PPiase) (EC 5.2.1.8)

	TK090902_P14_mitoch_2D_step09.2011.2011.2	1.4578	0.2702	1026.88	1	6430.0%	1	K.RVDHCPIK.S
	TK090902_P14_mitoch_2D_step13.2090.2090.2	2.6808	0.4381	1388.28	1	6820.0%	1	R.KGDVLHMHYTGK.L

Q91YQ5

99.6%

608

68528

6.5

(Q91YQ5) Similar to ribophorin I

*	TK090902_P14_mitoch_2D_step01.4494.4494.1	0.8187	0.0026	997.33	109	2780.0%	1	K.LPVALDPGSK.I
*	TK090902_P14_mitoch_2D_step06.2644.2644.1	1.667	0.1818	981.09	1	6250.0%	7	R.LAHLGVQIK.G
*	TK090902_P14_mitoch_2D_step11.3687.3687.2	2.9219	0.5916	2872.57	1	3120.0%	6	K.ISVVVETVYTHVLHPYPTQITQSEK.Q

Q9QZF7

99.6%

535

61003

8.6

(Q9QZF7) Flavin-containing monooxygenase 2

*	TK090902_P14_mitoch_2D_step04.2051.2051.1	1.2578	0.0744	871.38	1	5000.0%	1	K.HPVGFEGK.R
*	TK090902_P14_mitoch_2D_step13.3449.3449.2	2.4467	0.3759	2390.66	1	3250.0%	6	R.TVFDAVMVCSGHHIQPHLPLK.S
	TK090902_P14_mitoch_2D_step07.2239.2239.1	1.2348	0.0117	712.24	2	7000.0%	1	R.ILKPLK.T

Q99LB7

99.6%

919

101682

6.7

(Q99LB7) Similar to CG6385 gene product

	TK090902_P14_mitoch_2D_step13.2574.2574.2	4.0838	0.7158	1723.94	1	7140.0%	1	K.VPLVAMHHAYVVTER.I
*	TK090902_P14_mitoch_2D_step13.1701.1701.1	1.5873	0.1617	1250.65	1	6110.0%	1	R.FHHSLTDHTR.W
	TK090902_P14_mitoch_2D_step12.3269.3269.2	1.275	0.2318	2539.95	1	2620.0%	4	R.HWHADLRPDDSPLEAGLAFTCK.L
	TK090902_P14_mitoch_2D_step11.3603.3603.2	1.4442	0.0763	2780.36	12	2170.0%	2	R.HWHADLRPDDSPLEAGLAFTCKLK.T

SSDH_HUMAN

99.6%

535

57215

8.3

(P51649) Succinate semialdehyde dehydrogenase, mitochondrial precursor (EC 1.2.1.24) (NAD(+)-dependent succinic semialdehyde dehydrogenase)

*	TK090902_P14_mitoch_2D_step15.2074.2074.2	0.7687	0.0345	2225.61	5	1590.0%	1	R.AGGLVPASGPAPGPAQLRCYAGR.L
*	TK090902_P14_mitoch_2D_step13.1936.1936.1	2.5594	0.4397	1205.11	1	5000.0%	2	K.ILLHHAANSVK.R

Z219_HUMAN

99.6%

722

76876

9.5

(Q9P2Y4) Zinc finger protein 219

*	TK090902_P14_mitoch_2D_step10.3947.3947.2	1.7148	0.026	3052.13	8	1900.0%	3	R.APQPPDLGLLAYEPLGPALLLAPAPTPAER.R

H11_MOUSE

99.6%

212

21654

10.9

(P43275) Histone H1.1 (H1 VAR.3) (H1A)

*	TK090902_P14_mitoch_2D_step13.3377.3377.2	2.6513	0.6168	2013.88	1	4740.0%	1	R.KKPAGPSVSELIVQAVSSSK.E

Q9DB20

99.6%

114

19.7%

213

23364

10.0

(Q9DB20) DNA segment, Chr 12, Wayne state University 28, expressed (Unknown) (Protein for MGC:19017)

*	TK090902_P14_mitoch_2D_step01.1205.1205.1	0.7095	0.0299	1031.42	14	3120.0%	1	K.YVDMSAKSK.I
	TK090902_P14_mitoch_2D_step07.2787.2787.2	2.624	0.497	1585.82	1	5380.0%	7	K.LVRPPVQVYGIEGR.Y
*	TK090902_P14_mitoch_2D_step10.4021.4021.2	2.2919	0.4394	2034.78	1	3610.0%	8	R.LGNTQGIISAFSTIMSVHR.G

B3AT_MOUSE

99.6%

19.7%

929

103135

5.4

(P04919) Band 3 anion transport protein (Anion exchange protein 1) (AE 1) (MEB3)

*	TK090902_P14_mitoch_2D_step01.2641.2641.1	1.0861	0.0131	1095.28	44	3890.0%	1	K.ALLNLVPVQK.E
*	TK090902_P14_mitoch_2D_step01.2568.2568.1	1.212	0.2644	1498.01	1	3080.0%	2	K.IPPDSETTLVLVGR.A
*	TK090902_P14_mitoch_2D_step06.3888.3888.2	2.8369	0.5501	2438.66	1	4470.0%	1	R.NQELQWVEAAHWIGLEENLR.E
*	TK090902_P14_mitoch_2D_step10.3083.3083.2	1.5622	0.3152	2546.49	1	2950.0%	2	R.RYLPSPAKPDPNLYNTLDLNGGK.G
*	TK090902_P14_mitoch_2D_step04.4221.4221.3	2.4263	0.4705	3837.36	1	1890.0%	4	K.GTFLLGLAETSLAGVANHLLDCFIYEDQIRPQDR.E
*	TK090902_P14_mitoch_2D_step04.2681.2681.2	1.3374	0.0404	1643.92	12	3460.0%	4	R.ITASMAHNREELLR.S
*	TK090902_P14_mitoch_2D_step05.2872.2872.2	4.6134	0.616	2010.22	1	6670.0%	3	R.SHAEDLGNLEGVKPAVLTR.S
	TK090902_P14_mitoch_2D_step03.2440.2440.1	1.3653	0.2669	1329.74	1	5000.0%	2	R.SVTHANALTVMGK.A
	TK090902_P14_mitoch_2D_step06.3474.3474.3	1.8425	0.0417	3925.7	24	1320.0%	1	R.IPLAVLFGIFLYMGVTSLSGIQLFDRILLLFKPPK.Y
*	TK090902_P14_mitoch_2D_step10.2985.2985.2	3.3718	0.5862	2165.63	1	4470.0%	5	K.RSHAEDLGNLEGVKPAVLTR.S

ACE_MOUSE

99.6%

1312

150948

6.6

(P09470) Angiotensin-converting enzyme, somatic isoform precursor (EC 3.4.15.1) (ACE) (Dipeptidyl carboxypeptidase I) (Kininase II)

	TK090902_P14_mitoch_2D_step13.1297.1297.1	1.3935	0.0994	991.07	3	4440.0%	4	R.AAGHTGPLHK.C
	TK090902_P14_mitoch_2D_step03.2432.2432.1	0.6165	0.0873	956.96	61	3330.0%	1	R.FVEEYDR.T
*	TK090902_P14_mitoch_2D_step07.3587.3587.2	5.1964	0.71	2080.18	1	6180.0%	8	R.RQEEAALVSQEFAEVWGK.K
	TK090902_P14_mitoch_2D_step01.3143.3143.1	1.055	0.2013	933.0	23	3570.0%	1	R.AILPFFPK.Y
	TK090902_P14_mitoch_2D_step03.1805.1805.2	0.5373	0.0185	2514.66	22	750.0%	1	K.IAFLPFGYLVDQWRWGVFSGR.T

H33_HUMAN

99.6%

23.7%

135

15197

11.3

(P06351) Histone H3.3 (H3.A) (H3.B) (H3.3Q) (P06351) Histone H3.3 (H3.A) (H3.B) (H3.3Q)

	TK090902_P14_mitoch_2D_step08.4159.4159.3	3.4285	0.5331	3442.52	1	2500.0%	4	R.FQSAAIGALQEASEAYLVGLFEDTNLCAIHAK.R

ABD3_MOUSE

99.6%

659

75483

9.3

(P55096) ATP-binding cassette, sub-family D, member 3 (70 kDa peroxisomal membrane protein) (PMP70) (PMP68)

*	TK090902_P14_mitoch_2D_step13.2424.2424.2	4.0834	0.6489	2173.11	1	5880.0%	1	R.HLHSTHSELLEDYYQSGR.M
	TK090902_P14_mitoch_2D_step12.2259.2259.1	1.4856	0.3067	1457.85	1	4500.0%	1	K.HHEYYLHMDGR.G
*	TK090902_P14_mitoch_2D_step13.2477.2477.2	0.6299	0.0054	2673.04	22	600.0%	1	K.LTSAIGAQGPASMMAYLLVSGLFLTR.L

TBBX_HUMAN

99.6%

444

49671

4.9

(P05218) Class I beta tubulin. Tubulin beta-5 chain (P05218) Class I beta tubulin. Tubulin beta-5 chain

	TK090902_P14_mitoch_2D_step05.3929.3929.2	2.6091	0.2924	1962.79	1	5000.0%	4	K.GHYTEGAELVDSVLDVVR.K
	TK090902_P14_mitoch_2D_step05.3768.3768.2	2.4447	0.4392	2800.38	1	3400.0%	1	R.SGPFGQIFRPDNFVFGQSGAGNNWAK.G
	TK090902_P14_mitoch_2D_step04.4629.4629.3	1.1273	0.0763	4742.26	1	1100.0%	1	R.SGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR.K

Q9D846

99.6%

121

14322

9.4

(Q9D846) 2010300P09Rik protein

	TK090902_P14_mitoch_2D_step08.3294.3294.2	3.812	0.5061	1702.04	1	6920.0%	3	K.KTYAEILEPFHPVR.-
	TK090902_P14_mitoch_2D_step03.4626.4626.1	0.5824	0.0347	1571.81	32	1670.0%	1	K.TYAEILEPFHPVR.-

RS4_HUMAN

99.6%

262

29467

10.2

(P12750) 40S ribosomal protein S4, X isoform (Single copy abundant mRNA protein) (SCR10) (P12750) 40S ribosomal protein S4, X isoform (Single copy abundant mRNA protein) (SCR10)

	TK090902_P14_mitoch_2D_step09.2543.2543.1	1.5543	0.0606	1218.13	1	5500.0%	7	K.GIPHLVTHDAR.T
	TK090902_P14_mitoch_2D_step12.2144.2144.1	2.2789	0.4596	1509.14	1	4580.0%	4	R.ERHPGSFDVVHVK.D
	TK090902_P14_mitoch_2D_step09.2620.2620.1	1.4284	0.4225	1222.78	1	5000.0%	3	R.HPGSFDVVHVK.D

Q9CY40

99.6%

162

24.6%

122

13184

8.8

(Q9CY40) Hemoglobin, beta adult major chain

	TK090902_P14_mitoch_2D_step11.3910.3910.2	3.2501	0.4431	2996.29	1	2760.0%	10	K.KVADALANAAGHLDDLPGALSALSDLHAHK.L
	TK090902_P14_mitoch_2D_step06.3953.3953.3	4.9854	0.6888	2866.51	1	3570.0%	1	K.VADALANAAGHLDDLPGALSALSDLHAHK.L

T9S3_MOUSE

99.6%

587

67545

7.2

(Q9ET30) Transmembrane 9 superfamily protein member 3 precursor

	TK090902_P14_mitoch_2D_step10.4100.4100.2	3.4477	0.5836	2875.06	1	3400.0%	3	K.SISHYHETLGEALQGVELEFSGLDIK.F
	TK090902_P14_mitoch_2D_step14.3569.3569.3	1.2585	0.0601	4218.18	65	950.0%	1	K.MYGLFQTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVR.K

MLEN_MOUSE

99.6%

27.0%

141

15731

4.9

(Q60605) Myosin light chain alkali, non-muscle isoform (MLC3nm) (Fragment)

	TK090902_P14_mitoch_2D_step01.3907.3907.2	2.3493	0.4205	1890.78	1	4670.0%	1	K.VLDFEHFLPMLQTVAK.N
*	TK090902_P14_mitoch_2D_step08.4254.4254.1	0.8058	0.0346	1421.16	15	2920.0%	1	K.VLGTPKSDEMNVK.V
	TK090902_P14_mitoch_2D_step03.2541.2541.1	2.4555	0.3547	997.89	1	6250.0%	4	R.HVLVTLGEK.M

Q8VCH0

99.6%

424

43995

8.5

(Q8VCH0) Similar to acetyl-CoA acyltransferase, 3-oxo acyl-CoA thiolase A, peroxisomal

	TK090902_P14_mitoch_2D_step05.3192.3192.2	2.8641	0.6166	1934.52	1	4210.0%	6	K.VNPLGGAIALGHPLGCTGAR.Q

LYCM_MOUSE

99.6%

37.8%

148

16689

8.8

(P08905) Lysozyme C, type M precursor (EC 3.2.1.17) (1,4-beta-N-acetylmuramidase C)

*	TK090902_P14_mitoch_2D_step02.4613.4613.2	0.7591	0.0408	3032.41	125	930.0%	1	K.TPRAVNACGINCSALLQDDITAAIQCAK.R
*	TK090902_P14_mitoch_2D_step11.3839.3839.3	4.1156	0.6396	3237.19	1	2960.0%	1	K.RNGMAGYYGVSLADWVCLAQHESNYNTR.A
*	TK090902_P14_mitoch_2D_step04.3890.3890.2	1.8486	0.3652	3079.53	1	2690.0%	2	R.NGMAGYYGVSLADWVCLAQHESNYNTR.A

DYHC_MOUSE

99.6%

4644

532030

6.4

(Q9JHU4) Dynein heavy chain, cytosolic (DYHC) (Cytoplasmic dynein heavy chain)

	TK090902_P14_mitoch_2D_step12.2256.2256.2	1.2963	0.0172	1853.36	9	3570.0%	1	K.VFEEDALSWEDKLNR.I
	TK090902_P14_mitoch_2D_step03.3817.3817.2	0.9689	0.0514	2552.48	15	1590.0%	1	R.VLITLGDQDIDLSPSFVIFLSTR.D
*	TK090902_P14_mitoch_2D_step04.3738.3738.2	1.9757	0.1603	1860.65	1	4000.0%	5	R.ILVDDTIITTLENLKR.E
	TK090902_P14_mitoch_2D_step12.3423.3423.3	1.1872	0.0779	4286.69	132	830.0%	1	R.KVEETDIVMQEVETVSQQYLPLSTACSSIYFTMESLK.Q
	TK090902_P14_mitoch_2D_step15.3620.3620.2	2.5117	0.4529	2775.15	1	2920.0%	1	R.HEALLYTWLAEHKPLVLCGPPGSGK.T
	TK090902_P14_mitoch_2D_step07.3464.3464.2	2.8748	0.4202	2532.04	1	2950.0%	2	K.TKPVTGNLRPEEALQALTIYEGK.F
*	TK090902_P14_mitoch_2D_step13.3954.3954.2	5.1687	0.5675	2374.75	1	5250.0%	2	R.TLHTTASNWLHLIPQTLSPLK.R
*	TK090902_P14_mitoch_2D_step02.4642.4642.3	1.4059	0.3404	4571.65	6	1120.0%	1	R.ITTVPLPTAPNVPIIDYEVSISGEWSPWQAKVPQIEVETHK.V
	TK090902_P14_mitoch_2D_step13.3185.3185.2	4.1539	0.597	1616.61	1	7500.0%	1	R.KLEHLITELVHQR.D
	TK090902_P14_mitoch_2D_step12.2881.2881.2	1.0274	0.0113	2201.01	5	3060.0%	1	K.TLMAQSIYGGRVDNEFDQR.L
	TK090902_P14_mitoch_2D_step05.4225.4225.2	1.0191	0.0693	3145.32	3	1670.0%	1	K.ASVVTLPVYLNFTRADLIFTVDFEIATK.E
	TK090902_P14_mitoch_2D_step14.4674.4674.3	1.5655	0.0847	3111.01	29	1540.0%	1	R.FLRHVPVVYVDYPGPASLTQIYGTFNR.A

Q9CY30

99.6%

13.7%

153

18301

9.1

(Q9CY30) 2510015F01Rik protein

	TK090902_P14_mitoch_2D_step12.3131.3131.2	3.539	0.5434	2574.32	1	4750.0%	1	R.RTPLQHEAPLWMDQLCTGCMK.T

O35129

99.6%

299

33296

9.8

(O35129) BAP

	TK090902_P14_mitoch_2D_step01.3077.3077.1	1.1979	0.0304	1212.77	31	3500.0%	2	R.VLPSIVNEVLK.S
	TK090902_P14_mitoch_2D_step10.2377.2377.3	1.6124	0.0387	3098.93	2	2210.0%	1	K.TIATSQNRIYLTADNLVLNLQDESFTR.G
	TK090902_P14_mitoch_2D_step05.2600.2600.2	2.6767	0.3387	1891.99	1	5330.0%	4	R.VLSRPNAQELPSMYQR.L
	TK090902_P14_mitoch_2D_step02.3825.3825.2	0.931	0.0449	2928.13	165	1400.0%	1	R.IYLTADNLVLNLQDESFTRGSDSLIK.G

MCCA_MOUSE

99.6%

717

79344

7.8

(Q99MR8) Methylcrotonyl-CoA carboxylase alpha chain, mitochondrial precursor (EC 6.4.1.4) (3-Methylcrotonyl-CoA carboxylase 1) (MCCase alpha subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase alpha subunit)

*	TK090902_P14_mitoch_2D_step04.4873.4873.3	0.7289	0.0090	4566.49	2	910.0%	1	K.MGVQSVAVYSEADRNSMHVDMADEAYSIGPAPSQQSYLAMEK.I
*	TK090902_P14_mitoch_2D_step07.3307.3307.2	0.8744	0.0795	2614.24	15	1820.0%	1	R.QGDEVSVHYDPMIAKLVVWASDR.Q
*	TK090902_P14_mitoch_2D_step13.2460.2460.2	3.153	0.5278	2498.34	1	5000.0%	1	R.LSGHPEFEAGNVHTDFIPQHHK.D

ETFA_MOUSE

99.6%

15.9%

333

35039

8.4

(Q99LC5) Electron transfer flavoprotein alpha-subunit, mitochondrial precursor (Alpha-ETF)

	TK090902_P14_mitoch_2D_step03.3290.3290.2	3.1859	0.4833	1814.59	1	5940.0%	1	K.LLYDLADQLHAAVGASR.A
	TK090902_P14_mitoch_2D_step01.1662.1662.1	1.1336	0.0265	1292.09	5	3750.0%	1	R.LGGEVSCLVAGTK.C
*	TK090902_P14_mitoch_2D_step03.2000.2000.1	1.9961	0.297	1145.79	1	4440.0%	2	K.VLVAQHDAYK.G
*	TK090902_P14_mitoch_2D_step01.2932.2932.1	1.4579	0.2912	1414.37	5	3330.0%	2	K.LNVAPVSDIIEIK.S

RAGE_MOUSE

99.6%

43.2%

403

42669

6.1

(Q62151) Advanced glycosylation end product-specific receptor precursor (Receptor for advanced glycosylation end products)

*	TK090902_P14_mitoch_2D_step06.2461.2461.1	2.2242	0.1701	1154.99	1	6880.0%	4	K.KPPQQLEWK.L
*	TK090902_P14_mitoch_2D_step15.3794.3794.3	1.5793	0.1073	4697.95	2	1020.0%	3	R.VREPGPPEGIQLLVEPEGGIVAPGGTVTLTCAISAQPPPQVHWIK.D
*	TK090902_P14_mitoch_2D_step10.4673.4673.2	0.8734	0.1957	3045.67	167	930.0%	1	R.SELTVIPTQGGTTHPTFSCSFSLGLPRR.R
*	TK090902_P14_mitoch_2D_step01.2587.2587.2	0.9232	0.0903	2555.29	9	1520.0%	1	R.VYQIPGKPEIVDPASELTASVPNK.V
*	TK090902_P14_mitoch_2D_step06.4892.4892.3	0.7995	0.0208	4757.05	2	720.0%	1	K.DGAPLPLAPSPVLLLPEVGHADEGTYSCVATHPSHGPQESPPVSIR.V
*	TK090902_P14_mitoch_2D_step13.2656.2656.2	2.3676	0.5322	1328.83	1	7000.0%	1	R.RHPETGLFTLR.S
*	TK090902_P14_mitoch_2D_step12.2265.2265.2	1.3583	0.2056	1280.08	1	4500.0%	1	R.RPLNTAPIQLR.V

ILK1_HUMAN

99.6%

452

51419

8.1

(Q13418) Integrin-linked protein kinase 1 (EC 2.7.1.-) (ILK-1) (59 kDa serine/threonine protein kinase) (p59ILK)

	TK090902_P14_mitoch_2D_step13.2958.2958.2	2.2497	0.4394	2144.58	1	3420.0%	4	K.VALEGLRPTIPPGISPHVCK.L

Q62418

99.6%

433

48428

4.9

(Q62418) Drebrin-like SH3 domain-containing protein SH3P7

*	TK090902_P14_mitoch_2D_step12.3405.3405.2	1.9963	0.2411	1990.47	2	3160.0%	2	R.VAGTGEGGLEELVEELNSGK.V
*	TK090902_P14_mitoch_2D_step08.2190.2190.2	3.1477	0.5287	1880.68	1	6000.0%	1	R.TRQEWESAGQQAPHPR.E

O88299

99.5%

16.4%

438

47809

6.5

(O88299) 50 kDa glycoprotein (RH50) (Erythrocyte membrane protein RH50)

	TK090902_P14_mitoch_2D_step01.0395.0395.3	0.9529	0.0516	2716.25	42	1150.0%	1	R.AIVNTYMSLAACVITAYALSSLVER.R
	TK090902_P14_mitoch_2D_step13.4877.4877.3	1.3483	0.0053	3550.52	2	1330.0%	1	K.KYGFSGVGFNLFLAALGLQWGTIMQGLLHSHGK.E
	TK090902_P14_mitoch_2D_step11.2495.2495.2	3.2077	0.3746	1748.61	1	6150.0%	5	R.FFQHANHNHVEHEV.-

ZNT1_MOUSE

99.5%

503

54716

6.6

(Q60738) Zinc transporter 1 (ZnT-1)

	TK090902_P14_mitoch_2D_step13.2713.2713.2	3.0473	0.5163	2494.81	1	4770.0%	1	K.DVFHNHGIHATTIQPEFASVGSK.S

H2AZ_HUMAN

99.5%

127

13422

10.6

(P17317) Histone H2A.z (H2A/z) (P17317) Histone H2A.z (H2A/z)

	TK090902_P14_mitoch_2D_step12.2383.2383.1	1.7851	0.1765	1373.18	1	4230.0%	4	K.ATIAGGGVIPHIHK.S

DHB4_MOUSE

99.5%

14.0%

735

79524

8.6

(P51660) Estradiol 17 beta-dehydrogenase 4 (EC 1.1.1.62) (17-beta-HSD 4) (17-beta-hydroxysteroid dehydrogenase 4)

*	TK090902_P14_mitoch_2D_step08.2464.2464.2	1.8631	0.258	1768.75	2	3330.0%	5	R.TSHAAPAATSGFVGAVGHK.L
*	TK090902_P14_mitoch_2D_step11.1975.1975.2	2.1646	0.3949	1767.86	1	4330.0%	1	R.KNNIHCNTIAPNAGSR.M
	TK090902_P14_mitoch_2D_step04.3219.3219.2	1.1404	0.0047	2023.7	8	3120.0%	1	R.FAKPVYPGQTLQTEMWK.E
*	TK090902_P14_mitoch_2D_step15.4155.4155.3	1.2219	0.1168	4388.89	14	1120.0%	1	K.FVYEGSADFSCLPTFGVIVAQKSMMNGGLAEVPGLSFNFAK.A
	TK090902_P14_mitoch_2D_step08.2439.2439.1	0.7088	1.0E-4	1203.02	73	1670.0%	1	R.WERTLGAIVR.K

SCB1_MOUSE

99.5%

426

46244

5.9

(Q9Z2I9) Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial precursor (EC 6.2.1.5) (Succinyl-CoA synthetase, betaA chain) (SCS-betaA) (ATP-specific succinyl-CoA synthetase beta subunit) (Fragment)

*	TK090902_P14_mitoch_2D_step05.3615.3615.2	3.0187	0.5288	2615.52	1	4800.0%	2	K.LHGGTPANFLDVGGGATVQQVTEAFK.L
*	TK090902_P14_mitoch_2D_step08.1950.1950.1	1.2127	0.0872	1557.72	12	3210.0%	1	K.GFVAKSSDEAYAIAK.K

TRXB_MOUSE

99.5%

499

54497

6.3

(Q9JMH6) Thioredoxin reductase, cytoplasmic (EC 1.6.4.5) (TR)

	TK090902_P14_mitoch_2D_step11.4202.4202.2	1.034	0.0602	2841.66	1	2040.0%	1	R.VVGFHVLGPNAGEVTQGFAAALKCGLTK.Q
*	TK090902_P14_mitoch_2D_step13.2700.2700.1	2.4444	0.4106	1522.92	1	6150.0%	1	K.KLMHQAALLGQALK.D
*	TK090902_P14_mitoch_2D_step03.2333.2333.1	0.8755	0.1215	1173.01	1	3000.0%	1	K.IEQIEAGTPGR.L

Q9JHL1

99.4%

337

37393

7.6

(Q9JHL1) MSlc9a3r2/E3karp/Sip-1/Tka-1/Octs2

	TK090902_P14_mitoch_2D_step04.2282.2282.2	2.5211	0.3801	1425.39	1	6920.0%	3	R.RVEPGSPAEAAALR.A
*	TK090902_P14_mitoch_2D_step06.3042.3042.2	2.1718	0.4635	2991.14	2	2040.0%	1	R.GLPPAHNPWEPKPDWACSGSLGSDTGQK.D
	TK090902_P14_mitoch_2D_step06.2549.2549.1	2.1244	0.2573	1460.88	1	4580.0%	3	R.GEQGYGFHLHGEK.G
	TK090902_P14_mitoch_2D_step04.2926.2926.2	2.8082	0.5052	2056.27	1	4170.0%	3	K.RDPFQESGLHLSPTAAEAK.E
	TK090902_P14_mitoch_2D_step11.2499.2499.2	2.7271	0.3155	1577.43	1	5380.0%	3	R.RGPQGYGFNLHSDK.S

Q99KS1

99.4%

26.4%

144

16511

7.8

(Q99KS1) Hypothetical 16.5 kDa protein (Fragment)

	TK090902_P14_mitoch_2D_step01.2273.2273.1	1.0228	0.0311	1546.92	14	2690.0%	1	R.DLAGALDEKELIEK.M
	TK090902_P14_mitoch_2D_step08.3786.3786.2	1.528	0.2865	2555.27	1	2730.0%	2	K.NELHNLLDKPQLQGIPVLVLGNK.R
	TK090902_P14_mitoch_2D_step14.3462.3462.2	1.4374	0.2144	2710.84	1	2610.0%	1	K.NELHNLLDKPQLQGIPVLVLGNKR.D

POR2_MOUSE

99.4%

295

31733

7.5

(Q60930) Voltage-dependent anion-selective channel protein 2 (VDAC-2) (mVDAC2) (mVDAC6) (Outer mitochondrial membrane protein porin 2)

	TK090902_P14_mitoch_2D_step07.2847.2847.2	2.0186	0.5141	2106.68	1	3950.0%	3	K.VNNSSLIGVGYTQTLRPGVK.L
*	TK090902_P14_mitoch_2D_step04.1845.1845.1	0.9018	0.0461	915.82	5	4290.0%	1	R.SNFAVGYR.T
	TK090902_P14_mitoch_2D_step01.2716.2716.1	0.8397	0.0893	1017.25	27	3890.0%	1	K.LTLSALVDGK.S

RS23_HUMAN

99.4%

143

15808

10.5

(P39028) 40S ribosomal protein S23 (P39028) 40S ribosomal protein S23

	TK090902_P14_mitoch_2D_step12.1933.1933.1	0.9691	0.0203	1208.14	17	2730.0%	2	R.KGHAVGDIPGVR.F
	TK090902_P14_mitoch_2D_step13.1692.1692.1	2.0578	0.3947	939.22	1	5620.0%	1	K.KAHLGTALK.A
	TK090902_P14_mitoch_2D_step04.2323.2323.1	1.4262	0.3091	1078.11	19	3500.0%	1	K.GHAVGDIPGVR.F

CYPM_MOUSE

99.4%

206

21737

9.2

(Q99KR7) Peptidyl-prolyl cis-trans isomerase, mitochondrial precursor (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin F)

	TK090902_P14_mitoch_2D_step13.2009.2009.1	1.8924	0.4072	924.89	1	5710.0%	2	K.HVVFGHVK.E

NCPR_MOUSE

99.4%

677

76913

5.5

(P37040) NADPH-cytochrome P450 reductase (EC 1.6.2.4) (CPR) (P450R)

*	TK090902_P14_mitoch_2D_step05.3723.3723.2	1.9275	0.3126	2587.95	1	3100.0%	1	R.TNVLYELAQYASEPSEQEHLHK.M
*	TK090902_P14_mitoch_2D_step11.3682.3682.2	1.2412	0.204	2905.69	5	2000.0%	1	R.YGMRGMSADPEEYDLADLSSLPEIDK.S
	TK090902_P14_mitoch_2D_step10.3189.3189.1	1.3479	0.0068	1538.93	2	3750.0%	3	R.HLMHLELDISDSK.I
*	TK090902_P14_mitoch_2D_step05.2296.2296.1	1.0477	0.0277	955.82	2	5000.0%	1	R.DKEHLWK.L
*	TK090902_P14_mitoch_2D_step13.4120.4120.2	2.9053	0.506	2992.23	1	2960.0%	1	R.LPFKPTTPVIMVGPGTGVAPFMGFIQER.A

Q925I1

99.4%

591

66742

9.3

(Q925I1) TOB3

*	TK090902_P14_mitoch_2D_step07.2488.2488.2	2.14	0.2786	2165.51	1	3890.0%	4	K.VERPDSQTNKPPHPSLLSC.-

RL1X_MOUSE

99.4%

176

20732

10.7

(P11249) 60S ribosomal protein L18a

	TK090902_P14_mitoch_2D_step05.2353.2353.1	2.2044	0.3965	928.2	3	7140.0%	2	R.AHSIQIMK.V
	TK090902_P14_mitoch_2D_step03.1828.1828.1	0.6404	0.2596	718.37	43	4000.0%	1	R.CLPTPK.C

Q63918

99.4%

418

46764

5.2

(Q63918) Serum deprivation response (Sdpr protein)

	TK090902_P14_mitoch_2D_step10.2472.2472.1	0.886	0.0517	1366.14	1	5000.0%	9	K.RLENNHAQLLR.R
*	TK090902_P14_mitoch_2D_step08.5051.5051.3	1.0331	0.06	3599.79	42	1020.0%	1	R.RGNNSAVGSNADLTIEEDEEEEPVALQQAQQVR.Y
*	TK090902_P14_mitoch_2D_step10.2840.2840.3	1.371	0.0078	3100.21	34	960.0%	1	K.EELADENKSLEETLHNVDLSSDDELPR.D

A4_MOUSE

99.4%

770

86752

4.8

(P12023) Alzheimer's disease amyloid A4 protein homolog precursor (Amyloidogenic glycoprotein) (AG)

	TK090902_P14_mitoch_2D_step13.2290.2290.1	2.0601	0.2693	1236.77	1	5560.0%	1	K.THTHIVIPYR.C
	TK090902_P14_mitoch_2D_step11.2758.2758.2	2.8274	0.5007	1866.26	1	5360.0%	2	R.MDVCETHLHWHTVAK.E

MTPN_MOUSE

99.4%

117

12730

5.5

(P80144) Myotrophin (V-1 protein) (Granule cell differentiation protein)

	TK090902_P14_mitoch_2D_step14.3043.3043.2	2.6318	0.501	2149.14	1	4720.0%	1	K.HHITPLLSAVYEGHVSCVK.L

Q9ERN6

99.4%

4967

564908

6.1

(Q9ERN6) Cardiac Ca2+ release channel

*	TK090902_P14_mitoch_2D_step08.1680.1680.3	1.1804	0.1969	1584.04	131	1040.0%	1	K.DKETPKPEFNNHK.D
	TK090902_P14_mitoch_2D_step01.1939.1939.1	0.7208	0.0075	816.57	280	3330.0%	1	K.GEAIRIR.S
	TK090902_P14_mitoch_2D_step07.1646.1646.3	1.0737	0.0284	1915.23	24	1560.0%	1	R.MGFFSLLTIQSALFALR.Y
	TK090902_P14_mitoch_2D_step13.4196.4196.2	1.0652	0.0022	3041.68	16	1430.0%	1	R.GSTPLDVAAASVMDNNELALALREPDLEK.V
	TK090902_P14_mitoch_2D_step07.2032.2032.1	0.9042	0.0222	1002.15	16	4290.0%	1	K.YLSLMEDK.N
	TK090902_P14_mitoch_2D_step02.4423.4423.2	1.1938	0.2356	2897.84	1	1740.0%	1	R.LAENIHELWVMNKIELGWQYGPVR.D
	TK090902_P14_mitoch_2D_step14.2759.2759.3	1.3517	0.0096	3371.99	3	1720.0%	1	K.NYQLTSGYKPAPMDLSFIKLTPSQEAMVDK.L
	TK090902_P14_mitoch_2D_step01.4440.4440.1	0.813	0.0037	826.5	11	3330.0%	2	K.VKPQLLK.T
*	TK090902_P14_mitoch_2D_step03.3259.3259.3	1.0038	0.0586	3826.04	128	810.0%	1	R.TALSLPANVEDVCPNIPSLEKLMTEIIELAESGIR.Y
	TK090902_P14_mitoch_2D_step10.4071.4071.2	1.741	0.0534	3007.32	2	2410.0%	1	R.ALGMHETVMEVMVNVLGGGESKEITFPK.M
	TK090902_P14_mitoch_2D_step11.3007.3007.3	1.4549	0.0976	3296.07	10	1730.0%	1	R.ISERQGWLVQCLDPLQFMSLHIPEENR.S
*	TK090902_P14_mitoch_2D_step10.4747.4747.3	1.5415	0.1784	3028.53	6	1730.0%	1	R.VGWSRPGCQPDLELGSDDRAFAFDGFK.A
	TK090902_P14_mitoch_2D_step13.2454.2454.2	1.4047	0.0119	2135.93	15	2350.0%	1	R.MLALFVAFAINFILLFYK.V
	TK090902_P14_mitoch_2D_step13.2548.2548.2	0.9054	0.1131	2068.26	29	1560.0%	1	K.LFYTLLIMGIFHNEDLK.H
	TK090902_P14_mitoch_2D_step04.4977.4977.2	0.7027	0.0748	2798.32	35	1040.0%	1	K.VAELLANMPDPTQDEVRGDEEEGER.K
	TK090902_P14_mitoch_2D_step12.2175.2175.1	1.244	0.1036	1575.99	6	2860.0%	1	K.KDSSLSAVLNSIDVK.Y

IDHG_MOUSE

99.4%

393

42785

9.0

(P70404) Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial precursor (EC 1.1.1.41) (Isocitric dehydrogenase) (NAD+-specific ICDH)

	TK090902_P14_mitoch_2D_step09.1957.1957.3	0.8145	0.0534	2142.45	146	1180.0%	1	R.NNILRTSLDLYANVIHCK.S
	TK090902_P14_mitoch_2D_step11.3035.3035.1	1.5115	0.283	1222.16	2	5560.0%	1	R.HKDIDILIVR.E
	TK090902_P14_mitoch_2D_step09.3600.3600.2	2.6651	0.4058	2149.48	1	4210.0%	3	R.HTVTMIPGDGIGPELMLHVK.S
	TK090902_P14_mitoch_2D_step10.1740.1740.1	1.5066	0.1583	784.25	1	5830.0%	2	K.KVTAVHK.A
	TK090902_P14_mitoch_2D_step08.1959.1959.2	1.3818	0.0393	1560.83	1	5770.0%	3	K.GNIETNHNLPPSHK.S

MDHC_MOUSE

99.4%

10.5%

333

36346

6.6

(P14152) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37)

	TK090902_P14_mitoch_2D_step04.2363.2363.2	1.0196	0.0986	1812.65	449	2140.0%	1	K.TWKFVEGLPINDFSR.E
	TK090902_P14_mitoch_2D_step04.2935.2935.2	1.9565	0.4676	2283.3	1	4210.0%	2	K.NVIIWGNHSSTQYPDVNHAK.V

LCFD_MOUSE

99.4%

711

79223

8.2

(Q9QUJ7) Long-chain-fatty-acid--CoA ligase 4 (EC 6.2.1.3) (Long-chain acyl-CoA synthetase 4) (LACS 4) (mACS4)

*	TK090902_P14_mitoch_2D_step09.2553.2553.2	2.4595	0.5259	2142.72	1	5000.0%	1	K.LKDWQEGGYTVHDKPNPR.G

SCB2_MOUSE

99.4%

404

43857

6.2

(Q9Z2I8) Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial precursor (EC 6.2.1.4) (Succinyl-CoA synthetase, betaG chain) (SCS-betaG) (GTP-specific succinyl-CoA synthetase beta subunit) (Fragment)

*	TK090902_P14_mitoch_2D_step07.2957.2957.2	1.0545	0.0608	2175.35	81	2110.0%	1	K.DPKVVGELAQQMIGYNLATK.Q
*	TK090902_P14_mitoch_2D_step11.2097.2097.1	1.3017	0.2118	1057.09	2	5000.0%	3	K.KLMSEHGVR.V
*	TK090902_P14_mitoch_2D_step01.1710.1710.1	1.6924	0.2122	1558.77	2	4230.0%	1	R.LEGTNVQEAQNILK.S

Q8R2X0

99.4%

443

50025

6.4

(Q8R2X0) Similar to EH-domain containing 2

*	TK090902_P14_mitoch_2D_step05.2507.2507.1	1.4732	0.3035	1304.21	1	5000.0%	1	K.LEGHGLPTNLPR.R
	TK090902_P14_mitoch_2D_step15.3342.3342.3	1.3493	4.0E-4	2789.71	37	1740.0%	1	K.LPVIFAKIQLEHHISPGDFPDCQK.M
	TK090902_P14_mitoch_2D_step06.2706.2706.2	2.8421	0.5068	2023.04	1	4690.0%	1	K.IQLEHHISPGDFPDCQK.M

CALX_MOUSE

99.4%

12.5%

591

67278

4.6

(P35564) Calnexin precursor

	TK090902_P14_mitoch_2D_step04.2127.2127.1	2.3623	0.4104	1301.96	1	6110.0%	3	R.KPEDWDERPK.I
	TK090902_P14_mitoch_2D_step02.2600.2600.3	1.2767	0.2277	4441.07	34	710.0%	1	K.THLYTLILNPDNSFEILVDQSVVNSGNLLNDMTPPVNPSR.E
	TK090902_P14_mitoch_2D_step09.3281.3281.1	1.7524	0.1431	834.97	1	8000.0%	7	K.LHFIFR.H
*	TK090902_P14_mitoch_2D_step12.3092.3092.2	1.3267	0.0059	2243.49	26	2650.0%	3	K.WKPPMIDNPNYQGIWKPR.K

Q9CZH0

99.4%

9.0%

321

36551

5.6

(Q9CZH0) 11 days embryo cDNA, RIKEN full-length enriched library, clone:2700098C24, full insert sequence

	TK090902_P14_mitoch_2D_step06.3481.3481.2	0.8896	0.0265	1871.05	70	2190.0%	1	K.TLEEQNQLLSAELGGLR.A
	TK090902_P14_mitoch_2D_step15.1512.1512.2	2.4911	0.5111	1270.6	1	5910.0%	1	R.RPPAPAHASPIR.A

Q8R1S0

99.4%

470

50793

7.0

(Q8R1S0) Similar to CGI-10 protein (Fragment)

*	TK090902_P14_mitoch_2D_step12.3343.3343.2	2.0356	0.3482	1868.82	1	4060.0%	2	R.ALFPLGLGHAAEYVRPR.V
*	TK090902_P14_mitoch_2D_step11.2422.2422.1	1.571	0.0897	1079.76	1	5560.0%	5	R.HAVALLKPTK.V
	TK090902_P14_mitoch_2D_step13.2716.2716.1	1.5024	0.0642	1083.3	1	6110.0%	1	K.KILLLEAGPK.K

Q9D6M7

99.4%

186

21862

6.6

(Q9D6M7) 2900010I05Rik protein

	TK090902_P14_mitoch_2D_step09.3228.3228.2	2.617	0.5007	2271.45	1	4690.0%	4	R.SQHERDPWYQWDHSELR.M

PEC1_MOUSE

99.4%

727

81263

6.7

(Q08481) Platelet endothelial cell adhesion molecule precursor (PECAM-1) (CD31 antigen)

*	TK090902_P14_mitoch_2D_step05.3185.3185.2	2.4556	0.4191	1856.41	1	5000.0%	3	R.ADNCHSHPAVFSEILR.V
*	TK090902_P14_mitoch_2D_step10.2936.2936.3	0.8653	0.0047	3116.88	6	770.0%	1	K.QSSEAVYSVMAMVEYSGHYTCKVESNR.I

PODX_MOUSE

99.4%

503

53389

5.0

(Q9R0M4) Podocalyxin-like protein 1 precursor

	TK090902_P14_mitoch_2D_step05.3424.3424.2	2.5674	0.5243	2808.26	1	3200.0%	2	K.ASFKPAEDLCTLHVAPILDNQAVAVK.R
	TK090902_P14_mitoch_2D_step11.2606.2606.2	1.5312	0.3406	3053.47	10	1720.0%	1	K.SGDSFTTAPTTTLGLINVSSQPTDLNTTSK.L
*	TK090902_P14_mitoch_2D_step06.3428.3428.3	1.1049	0.0656	3608.65	26	1210.0%	1	K.VVNLNGELGDSWIVPLDNLTKDDLDEEEDTHL.-

APA2_MOUSE

99.4%

102

11319

7.2

(P09813) Apolipoprotein A-II precursor (Apo-AII)

*	TK090902_P14_mitoch_2D_step04.2562.2562.1	1.867	0.4084	1195.09	1	6110.0%	2	K.THEQLTPLVR.S

SRC8_MOUSE

99.4%

546

61260

5.4

(Q60598) Src substrate cortactin

	TK090902_P14_mitoch_2D_step11.2082.2082.2	2.9508	0.4981	1686.03	1	5710.0%	1	K.TVQGSGHQEHINIHK.L

Q9DBT6

99.4%

624

65369

9.5

(Q9DBT6) 1200014E20Rik protein

	TK090902_P14_mitoch_2D_step12.1677.1677.1	0.8577	0.2552	1524.67	15	1070.0%	1	K.TEGGAPAKLFGFVAR.K
*	TK090902_P14_mitoch_2D_step15.2262.2262.3	2.1601	0.2114	2592.06	1	2400.0%	1	R.HPVGSHQVPGLHSSVVTTPGSPSLGR.H

ODBA_HUMAN

99.4%

445

50471

8.3

(P12694) 2-oxoisovalerate dehydrogenase alpha subunit, mitochondrial precursor (EC 1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase component alpha chain (E1)) (BCKDH E1-alpha)

*	TK090902_P14_mitoch_2D_step07.2819.2819.2	2.9724	0.5158	2003.13	1	4670.0%	5	R.HLQTYGEHYPLDHFDK.-

NNTM_MOUSE

99.4%

12.3%

1086

113898

7.6

(Q61941) NAD(P) transhydrogenase, mitochondrial precursor (EC 1.6.1.2) (Pyridine nucleotide transhydrogenase) (Nicotinamide nucleotide transhydrogenase)

	TK090902_P14_mitoch_2D_step04.1862.1862.1	1.2091	0.0998	843.87	2	5000.0%	1	K.QLTVGVPK.E
*	TK090902_P14_mitoch_2D_step05.3824.3824.3	1.1943	0.0047	3226.69	1	1580.0%	1	R.VTIAQGYDALSSMANISGYKAVVLAANHFGR.F
*	TK090902_P14_mitoch_2D_step15.3818.3818.3	3.0085	0.4124	4239.07	1	1710.0%	1	K.VRAPMVNPTLGAHEADFLKPSGTLISFIYPAQNPDLLNK.L
*	TK090902_P14_mitoch_2D_step06.2254.2254.1	1.2829	0.0525	1086.7	8	4440.0%	2	K.SPVKPGIPYK.Q
	TK090902_P14_mitoch_2D_step01.0330.0330.1	0.826	0.0279	970.44	6	3750.0%	1	K.VIFPAPTPK.N
*	TK090902_P14_mitoch_2D_step01.0779.0779.1	0.8031	0.0422	1233.62	5	3500.0%	1	K.TTVLAMDQVPR.V
	TK090902_P14_mitoch_2D_step04.2626.2626.1	1.7152	0.0455	1429.91	8	4170.0%	1	K.GITHIGYTDLPSR.M
*	TK090902_P14_mitoch_2D_step01.2381.2381.1	1.9431	0.4174	1254.53	1	5830.0%	1	R.VALSPAGVQALVK.Q

O35371

99.4%

445

52152

5.6

(O35371) Peripherial benzodiazepine receptor associated protein

	TK090902_P14_mitoch_2D_step09.2101.2101.1	0.6898	0.0414	1189.62	130	1880.0%	1	K.FDNSYSLWR.S
	TK090902_P14_mitoch_2D_step08.2164.2164.2	2.4703	0.5306	2064.22	1	5000.0%	1	R.RDCHEEVYAGSHQYPGR.G

ODO1_MOUSE

99.4%

170

17.7%

130

15177

9.0

(Q60597) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) (Alpha-ketoglutarate dehydrogenase) (Fragment)

	TK090902_P14_mitoch_2D_step05.2919.2919.1	1.248	0.0749	1045.26	3	3750.0%	13	R.KPLIVFTPK.S
	TK090902_P14_mitoch_2D_step03.1685.1685.2	0.8897	0.0755	1476.28	23	3080.0%	1	R.VIPENGPAAQDPHK.V

GLG1_MOUSE

99.4%

1175

133734

6.8

(Q61543) Golgi apparatus protein 1 precursor (Golgi sialoglycoprotein MG-160) (E-selectin ligand 1) (ESL-1) (Selel)

	TK090902_P14_mitoch_2D_step13.1408.1408.1	1.5182	0.2432	1120.05	3	5560.0%	1	K.HHCAAITPGR.G
*	TK090902_P14_mitoch_2D_step02.4039.4039.3	1.2321	0.1265	4566.45	21	1090.0%	1	R.LDPQLQLHCSDEIANLCAEEAAAQEQTGQVEECLKVNLLK.I
	TK090902_P14_mitoch_2D_step10.2109.2109.1	2.0408	0.341	1433.86	1	5000.0%	3	R.GEIEHHCSGLHR.K

K1CS_MOUSE

99.4%

403

44542

5.4

(P19001) Keratin, type I cytoskeletal 19 (Cytokeratin 19) (K19) (CK 19)

	TK090902_P14_mitoch_2D_step04.2699.2699.1	1.4775	0.2486	1366.89	20	4500.0%	1	K.SRLEQEIATYR.S
*	TK090902_P14_mitoch_2D_step07.2241.2241.1	2.1268	0.409	1234.04	1	6670.0%	4	R.TKFETEHALR.L
*	TK090902_P14_mitoch_2D_step06.2388.2388.1	2.0956	0.0599	1342.24	1	6000.0%	4	K.KNHEEEITALR.S

Q9ESW4

99.4%

13.3%

421

46976

8.4

(Q9ESW4) Putative lipid kinase (Similar to hypothetical protein FLJ10842)

*	TK090902_P14_mitoch_2D_step06.2652.2652.2	1.2957	0.1061	2164.91	2	3530.0%	2	R.ERPPIEPEETPPRPSLYR.R
*	TK090902_P14_mitoch_2D_step08.3418.3418.2	1.4029	0.0882	2862.75	1	2290.0%	4	K.AAHFFSTLQEWPQTHQASISYTGPR.E
	TK090902_P14_mitoch_2D_step04.2878.2878.1	1.6347	0.0438	1409.63	8	3750.0%	1	K.VQHITDATLAIVK.G

Q9WV69

99.3%

405

45468

8.4

(Q9WV69) Dematin 52 kDa subunit

	TK090902_P14_mitoch_2D_step14.2218.2218.2	3.0864	0.4491	2381.6	1	4470.0%	1	R.TSLPHFHHPETTRPDSNIYK.K

S110_MOUSE

99.3%

11055

6.8

(P08207) Calpactin I light chain (P10 protein) (P11) (Cellular ligand of annexin II)

*	TK090902_P14_mitoch_2D_step04.1994.1994.1	1.9629	0.2216	1133.85	1	6110.0%	5	R.FAGDKDHLTK.E

TERA_MOUSE

99.3%

806

89308

5.3

(Q01853) Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)-ATPase p97 subunit) (Valosin containing protein) (VCP) [Contains: Valosin]

	TK090902_P14_mitoch_2D_step01.2780.2780.2	0.8903	0.1375	1727.24	13	2190.0%	1	R.GILLYGPPGTGKTLIAR.A
	TK090902_P14_mitoch_2D_step06.2248.2248.1	1.9656	0.388	1192.02	2	5000.0%	1	R.RDHFEEAMR.F
	TK090902_P14_mitoch_2D_step08.2067.2067.1	1.5878	0.1641	837.78	2	6430.0%	1	K.AIGVKPPR.G
	TK090902_P14_mitoch_2D_step13.4210.4210.2	0.8206	0.0124	2163.32	7	2500.0%	1	K.MTNGFSGADLTEICQRACK.L
	TK090902_P14_mitoch_2D_step08.3658.3658.2	1.5848	0.3461	2522.9	4	2270.0%	3	K.NVFIIGATNRPDIIDPAILRPGR.L
	TK090902_P14_mitoch_2D_step01.3887.3887.1	1.4765	0.2034	1433.77	4	2500.0%	1	R.IVSQLLTLMDGLK.Q
	TK090902_P14_mitoch_2D_step09.3591.3591.2	0.8495	0.0029	2146.27	28	2110.0%	1	R.AHVIVMAATNRPNSIDPALR.R

Q9D1L9

99.3%

9642

4.9

(Q9D1L9) 1110003H18Rik protein (RIKEN cDNA 1110003H18 gene)

	TK090902_P14_mitoch_2D_step06.2166.2166.1	1.869	0.345	1078.9	1	5560.0%	4	K.HDGITVAVHK.M

Q922S5

99.3%

571

64839

4.8

(Q922S5) Unknown (Protein for IMAGE:3598453) (Fragment)

*	TK090902_P14_mitoch_2D_step14.1369.1369.1	2.1113	0.3906	1569.28	2	3210.0%	1	R.VVPQKPPPSPHPTGK.I

PRTP_MOUSE

99.3%

474

53844

5.9

(P16675) Lysosomal protective protein precursor (EC 3.4.16.5) (Cathepsin A) (Carboxypeptidase C) (MO54)

*	TK090902_P14_mitoch_2D_step13.3197.3197.2	1.9015	0.4689	1836.4	1	4230.0%	1	K.HFHYWFVESQNDPK.N
*	TK090902_P14_mitoch_2D_step09.2045.2045.2	2.4921	0.4951	1267.58	1	5000.0%	2	K.GAGHMVPTDKPR.A
*	TK090902_P14_mitoch_2D_step06.2814.2814.1	1.1308	0.1717	1132.71	1	5000.0%	1	K.ALHIPESLPR.W

P97315

99.3%

8.8%

193

20583

8.6

(P97315) CYSTEIN rich protein-1 (Similar to cysteine rich protein)

	TK090902_P14_mitoch_2D_step11.1917.1917.2	2.5209	0.4463	1845.59	1	4380.0%	2	K.HEEAPGHRPTTNPNASK.F

TRAL_MOUSE

99.3%

706

80209

6.7

(Q9CQN1) Heat shock protein 75 kDa, mitochondrial precursor (HSP 75) (Tumor necrosis factor type 1 receptor associated protein) (TRAP-1) (TNFR-associated protein 1)

	TK090902_P14_mitoch_2D_step06.2566.2566.1	1.686	0.3914	1575.83	1	5420.0%	1	R.HLAEHSPYYEAMK.Q
	TK090902_P14_mitoch_2D_step11.4458.4458.2	1.291	0.188	2843.37	2	2270.0%	1	R.NIYYLCAPNRHLAEHSPYYEAMK.Q

ADHA_MOUSE

99.3%

16.0%

374

39640

8.1

(P00329) Alcohol dehydrogenase A chain (EC 1.1.1.1) (ADH-A2)

*	TK090902_P14_mitoch_2D_step06.2708.2708.3	0.9085	0.0067	4727.39	33	760.0%	1	R.LDTMTSALLSCHAACGVSVVVGVPPNAQNLSMNPMLLLLGRTWK.G
*	TK090902_P14_mitoch_2D_step06.4070.4070.2	1.9275	0.3784	1897.84	1	5330.0%	7	K.KFPLDPLITHVLPFEK.I

PDX4_MOUSE

99.3%

274

31053

7.2

(O08807) Peroxiredoxin 4 (EC 1.11.1.-) (Prx-IV) (Thioredoxin peroxidase AO372) (Thioredoxin-dependent peroxide reductase A0372) (Antioxidant enzyme AOE372)

	TK090902_P14_mitoch_2D_step05.2389.2389.1	2.1126	0.2993	1295.29	1	5000.0%	5	R.VSVADHSLHLSK.A

UTER_MOUSE

99.3%

19.8%

10519

6.5

(Q06318) Clara cell phospholipid-binding protein precursor (CCPBP) (Clara cells 10 kDa secretory protein) (CC10) (Uteroglobin) (PCB-binding protein) (Clara cell 17 kDa protein)

*	TK090902_P14_mitoch_2D_step03.4727.4727.1	0.991	0.08	1330.44	21	2000.0%	7	K.RLVDTLPQETR.I
*	TK090902_P14_mitoch_2D_step01.0152.0152.1	1.346	0.1185	933.64	3	5000.0%	5	K.ILTSPLCK.Q

Q9CX81

99.3%

462

51815

6.4

(Q9CX81) 3100002P13Rik protein

	TK090902_P14_mitoch_2D_step14.2771.2771.2	2.6221	0.1843	1666.37	1	6150.0%	1	R.RLPAFTLSHLESHR.A
	TK090902_P14_mitoch_2D_step13.1462.1462.1	2.1116	0.3802	933.89	1	7140.0%	1	R.LHVSKPPR.E

NFS1_MOUSE

99.3%

12.2%

451

50001

8.5

(Q9Z1J3) Cysteine desulfurase, mitochondrial precursor (EC 4.4.1.-) (m-Nfs1)

	TK090902_P14_mitoch_2D_step07.2397.2397.1	1.1564	0.0649	1535.02	1	3460.0%	3	R.KVYFHTDAAQAVGK.I
	TK090902_P14_mitoch_2D_step08.2404.2404.2	1.7959	0.0186	1483.72	2	4620.0%	1	R.ARQQVASLIGADPR.E
	TK090902_P14_mitoch_2D_step05.1992.1992.1	1.3919	0.0786	1193.85	1	5000.0%	1	K.HLVTTQTEHK.C
	TK090902_P14_mitoch_2D_step02.4130.4130.2	0.6377	0.1268	3048.05	11	890.0%	1	R.QQVASLIGADPREIIFTSGATESNNIAIK.G

Q923C1

99.3%

569

64795

7.1

(Q923C1) Similar to alpha 1,2-mannosidase (Fragment)

*	TK090902_P14_mitoch_2D_step15.2154.2154.2	2.3074	0.4961	1643.35	1	4290.0%	1	R.GPPHLQIRPPNTVSK.D
*	TK090902_P14_mitoch_2D_step01.0859.0859.1	0.6892	0.0104	1396.88	171	2000.0%	1	R.KWVSENLDFQK.N

MYHA_HUMAN

99.3%

1976

228937

5.5

(P35580) Myosin heavy chain, nonmuscle type B (Cellular myosin heavy chain, type B) (Nonmuscle myosin heavy chain-B) (NMMHC-B)

*	TK090902_P14_mitoch_2D_step12.3528.3528.2	0.7719	0.0158	2403.45	349	1190.0%	1	K.ATISALEAKIGQLEEQLEQEAK.E
*	TK090902_P14_mitoch_2D_step06.2290.2290.1	2.2074	0.3545	1382.1	1	5000.0%	4	K.KLDAQVQELHAK.V
*	TK090902_P14_mitoch_2D_step13.4740.4740.3	1.3159	0.2506	4257.83	34	1030.0%	1	R.YYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYR.G
*	TK090902_P14_mitoch_2D_step13.2466.2466.2	0.8178	0.0292	2244.21	20	1580.0%	1	R.RQLHLEGASLELSDDDTESK.T

Q99J99

99.2%

297

33023

6.6

(Q99J99) Similar to thiosulfate sulfurtransferase (Rhodanese)

*	TK090902_P14_mitoch_2D_step12.2968.2968.2	2.91	0.4851	1600.99	1	5710.0%	1	R.AFGHHSVSLLDGGFR.H
*	TK090902_P14_mitoch_2D_step03.1990.1990.1	1.2869	0.3371	1237.75	1	4500.0%	1	R.AQPEHIISEGR.G
*	TK090902_P14_mitoch_2D_step15.2050.2050.2	0.8097	0.0775	3074.28	225	930.0%	1	R.AFGHHSVSLLDGGFRHWLNQNLPISSGK.S

TKT_MOUSE

99.2%

623

67631

7.5

(P40142) Transketolase (EC 2.2.1.1) (TK) (P68)

	TK090902_P14_mitoch_2D_step06.2234.2234.1	2.2952	0.3632	1394.86	1	5420.0%	2	R.KISSDLDGHPVPK.Q
*	TK090902_P14_mitoch_2D_step09.2321.2321.1	1.4976	0.1459	1163.06	1	5560.0%	1	K.EAWHGKPLPK.N
	TK090902_P14_mitoch_2D_step09.4056.4056.2	0.88	0.0039	3084.73	157	860.0%	1	K.QAFTDVATGSLGQGLGAACGMAYTGKYFDK.A

Q9NSE4

99.2%

993

111801

6.9

(Q9NSE4) Mitochondrial isoleucine tRNA synthetase (Fragment)

*	TK090902_P14_mitoch_2D_step06.2770.2770.2	2.8061	0.4762	2649.53	1	3260.0%	2	K.TEFCLHDGPPYANGDPHVGHALNK.I
*	TK090902_P14_mitoch_2D_step03.4514.4514.3	1.3704	0.3186	4261.14	17	860.0%	1	K.DEYLINSQTTEHIVKLVEQHGSDIWWTLPPEQLLPK.E
*	TK090902_P14_mitoch_2D_step11.2779.2779.2	1.1314	0.213	2876.5	2	1800.0%	1	K.VKTEFCLHDGPPYANGDPHVGHALNK.I
*	TK090902_P14_mitoch_2D_step01.2523.2523.1	1.3366	0.2538	1477.0	4	3750.0%	1	R.DTVLLPQTSFPMK.L

PAB1_MOUSE

99.2%

15.6%

636

70643

9.5

(P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1) (PABP1)

	TK090902_P14_mitoch_2D_step11.2389.2389.3	1.5593	0.1361	2182.65	14	2220.0%	1	K.GYGFVHFETQEAAERAIEK.M
	TK090902_P14_mitoch_2D_step15.2181.2181.3	1.9632	0.0321	2520.76	1	2610.0%	1	K.GFGFVCFSSPEEATKAVTEMNGR.I
	TK090902_P14_mitoch_2D_step05.2763.2763.2	2.2578	0.4942	1697.07	1	5330.0%	1	R.SKVDEAVAVLQAHQAK.E
	TK090902_P14_mitoch_2D_step09.3029.3029.3	2.3144	0.3474	4461.86	1	1810.0%	1	R.NPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQK.Q

GTP1_MOUSE

99.1%

209

23406

7.8

(P46425) Glutathione S-transferase P 1 (EC 2.5.1.18) (GST YF-YF) (GST-piA) (GST class-pi)

	TK090902_P14_mitoch_2D_step13.3242.3242.2	2.5355	0.29	2138.22	1	5000.0%	2	K.ALPGHLKPFETLLSQNQGGK.A

ITA2_MOUSE

99.1%

1178

128927

5.2

(Q62469) Integrin alpha-2 precursor (Platelet membrane glycoprotein Ia) (GPIa) (Collagen receptor) (VLA-2 alpha chain) (CD49b)

*	TK090902_P14_mitoch_2D_step11.3122.3122.2	2.2402	0.5037	2445.85	1	4250.0%	1	K.CSEHHISIQKPSDVVNPLDLR.V
*	TK090902_P14_mitoch_2D_step09.3464.3464.3	1.5616	0.0756	3949.38	2	1470.0%	1	K.ECGSDGICISDLILDVQQLPAIQTQSFIVSNQNKR.L
*	TK090902_P14_mitoch_2D_step03.2418.2418.2	0.9225	0.1803	1314.58	7	2730.0%	1	K.EIKAIASTPTER.Y

Q9CQ83

99.1%

145

17086

9.4

(Q9CQ83) 2410011G03Rik protein

*	TK090902_P14_mitoch_2D_step12.2404.2404.1	2.0613	0.3396	1584.04	1	5000.0%	4	K.KIHEWVPPSTPYK.-
*	TK090902_P14_mitoch_2D_step04.2715.2715.1	1.3163	0.3092	1453.98	5	3640.0%	1	K.IHEWVPPSTPYK.-
	TK090902_P14_mitoch_2D_step12.2375.2375.1	1.3344	0.0246	1075.89	1	5710.0%	2	R.KFIWTNHK.F

Q61595

99.1%

1327

152592

5.9

(Q61595) Kinectin

*	TK090902_P14_mitoch_2D_step08.2470.2470.1	2.1707	0.2274	1426.92	1	4550.0%	1	K.KQKPSLEEQVIK.E
*	TK090902_P14_mitoch_2D_step05.1821.1821.1	1.0399	0.0338	1342.73	9	3640.0%	1	R.KLQTAVSQQPNK.D
*	TK090902_P14_mitoch_2D_step10.3013.3013.2	1.5832	0.0565	2240.76	4	2890.0%	1	R.EIIDMIKPDHVEGIQKSGTK.K
*	TK090902_P14_mitoch_2D_step01.1591.1591.1	1.166	0.0232	885.55	40	5000.0%	1	K.VEPVLVTK.Q
	TK090902_P14_mitoch_2D_step07.2176.2176.1	1.2276	0.0443	1102.72	68	3750.0%	1	R.QNEELNLLK.T
*	TK090902_P14_mitoch_2D_step09.2492.2492.1	0.9169	0.0616	1438.9	3	3640.0%	2	R.RQHVEAIELESK.D

MOES_MOUSE

99.1%

576

67636

6.6

(P26041) Moesin (Membrane-organizing extension spike protein)

	TK090902_P14_mitoch_2D_step07.2367.2367.1	2.2122	0.2779	1236.26	1	6250.0%	6	R.IQVWHEEHR.G
	TK090902_P14_mitoch_2D_step04.2319.2319.1	1.4384	0.1934	1530.8	2	4170.0%	2	K.KTANDMIHAENMR.L
	TK090902_P14_mitoch_2D_step04.2818.2818.1	2.0765	0.3695	963.96	2	6430.0%	3	R.KESPLLFK.F
*	TK090902_P14_mitoch_2D_step01.1411.1411.1	1.0673	0.0566	779.98	45	6000.0%	1	K.EELMEK.L
	TK090902_P14_mitoch_2D_step04.3934.3934.2	1.1609	0.0684	2366.42	30	2000.0%	1	K.GSELWLGVDALGLNIYEQNDR.L

ECHA_HUMAN

99.1%

763

83000

9.0

(P40939) Trifunctional enzyme alpha subunit, mitochondrial precursor (TP-alpha) (78 kDa gastrin-binding protein) [Includes: Long-chain enoyl-CoA hydratase (EC 4.2.1.17); Long chain 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)]

*	TK090902_P14_mitoch_2D_step04.4214.4214.2	0.9638	0.013	2747.09	6	1880.0%	1	K.TGIEQGSDAGYLCESQKFGELVMTK.E
*	TK090902_P14_mitoch_2D_step01.0185.0185.1	0.7076	0.0132	860.05	126	2860.0%	1	K.GLYPAPLK.I
*	TK090902_P14_mitoch_2D_step05.2080.2080.1	1.8557	0.3564	932.79	1	6430.0%	2	R.THINYGVK.G
*	TK090902_P14_mitoch_2D_step13.3004.3004.3	1.2268	0.0837	2870.31	34	1670.0%	1	K.ALTSFERDSIFSNLTGQLDYQGFEK.A

Q99LR1

99.1%

179

20880

7.6

(Q99LR1) Hypothetical 20.9 kDa protein

	TK090902_P14_mitoch_2D_step13.2001.2001.1	0.5545	0.1226	849.24	147	3000.0%	1	R.HKYIYK.S
*	TK090902_P14_mitoch_2D_step13.3816.3816.2	2.5326	0.4821	2639.12	1	3640.0%	2	K.HISCPLLILHAEDDPVVPFHLGR.K

Q9JJZ3

99.1%

709

77277

8.9

(Q9JJZ3) Shank3b protein

*	TK090902_P14_mitoch_2D_step08.2263.2263.1	1.3867	0.0782	1529.98	35	3460.0%	3	K.AHSPQGEGEIPLHR.G
*	TK090902_P14_mitoch_2D_step14.1247.1247.2	1.2472	0.0059	1335.39	11	4500.0%	1	K.RDHEGFGFVLR.G
	TK090902_P14_mitoch_2D_step11.2243.2243.1	1.1634	0.17	642.82	5	5000.0%	1	K.LPGSLR.K
*	TK090902_P14_mitoch_2D_step10.3060.3060.2	1.2845	0.0921	2046.34	17	2350.0%	1	-.MGLCGSLLPTFSLSEQFR.Y
*	TK090902_P14_mitoch_2D_step02.4068.4068.2	0.5403	0.0122	2923.8	62	620.0%	1	R.GGHNKISPSGPGGSGPAPGPGPASPAPPAPPPR.G

POR1_MOUSE

99.1%

31.8%

296

32351

8.4

(Q60932) Voltage-dependent anion-selective channel protein 1 (VDAC-1) (mVDAC1) (mVDAC5) (Outer mitochondrial membrane protein porin 1) (Plasmalemmal porin)

	TK090902_P14_mitoch_2D_step08.4436.4436.1	0.7556	0.1169	1531.97	20	1920.0%	1	K.LTFDSSFSPNTGKK.N
	TK090902_P14_mitoch_2D_step02.2815.2815.2	2.3309	0.4698	1948.1	1	3530.0%	4	K.KLETAVNLAWTAGNSNTR.F
	TK090902_P14_mitoch_2D_step06.3124.3124.2	2.6661	0.4504	2105.85	1	3950.0%	4	K.VNNSSLIGLGYTQTLKPGIK.L
*	TK090902_P14_mitoch_2D_step07.4967.4967.3	0.9153	0.1077	4546.87	160	620.0%	1	R.EHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSK.S
*	TK090902_P14_mitoch_2D_step07.3311.3311.2	2.3819	0.478	2286.27	1	3680.0%	2	K.REHINLGCDVDFDIAGPSIR.G

CYPB_MOUSE

99.1%

37.5%

208

22713

9.5

(P24369) Peptidyl-prolyl cis-trans isomerase B precursor (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin B) (S-cyclophilin) (SCYLP) (CYP-S1)

	TK090902_P14_mitoch_2D_step01.1354.1354.1	2.0641	0.2232	1247.06	1	4500.0%	3	K.IEVEKPFAIAK.E
	TK090902_P14_mitoch_2D_step01.2241.2241.1	0.8592	0.0064	1459.07	15	2500.0%	1	K.DTNGSQFFITTVK.T
	TK090902_P14_mitoch_2D_step01.1559.1559.1	1.7598	0.1951	1376.53	1	3640.0%	3	K.IEVEKPFAIAKE.-
	TK090902_P14_mitoch_2D_step09.2095.2095.1	1.4739	0.1543	1299.68	1	4170.0%	1	R.GDGTGGKSIYGER.F
*	TK090902_P14_mitoch_2D_step08.4024.4024.2	0.9561	0.0922	2742.44	22	1730.0%	1	K.VLFAAALIVGSVVFLLLPGPSVANDKK.K
	TK090902_P14_mitoch_2D_step01.2558.2558.1	1.7038	0.3552	1366.69	1	4580.0%	1	K.TVDNFVALATGEK.G

COPB_MOUSE

99.1%

953

107066

6.0

(Q9JIF7) Coatomer beta subunit (Beta-coat protein) (Beta-COP)

	TK090902_P14_mitoch_2D_step07.3224.3224.2	1.3165	0.1753	2093.67	1	3060.0%	4	K.LVEKPSPLTLAPHDFANIK.A
	TK090902_P14_mitoch_2D_step03.2508.2508.1	1.0733	0.0524	1129.02	12	3890.0%	1	K.LPGLLMTIIR.F

Q9CVB6

99.1%

16.5%

170

19913

8.4

(Q9CVB6) 2210023N03Rik protein (Fragment)

	TK090902_P14_mitoch_2D_step12.2317.2317.1	1.5169	0.263	1453.67	1	3750.0%	5	R.ASHTAPQVLFSHR.E
	TK090902_P14_mitoch_2D_step06.2561.2561.1	1.9204	0.3005	1090.03	1	6430.0%	2	R.DYLHYHIK.C
	TK090902_P14_mitoch_2D_step13.2796.2796.2	2.0979	0.3477	2259.22	1	3420.0%	1	R.ASHTAPQVLFSHREPPLELK.D

Q8R1K5

99.1%

222

21634

9.4

(Q8R1K5) Similar to heterogeneous nuclear ribonucleoprotein A3 (H. sapiens)

	TK090902_P14_mitoch_2D_step05.2005.2005.1	1.8738	0.3663	1472.68	1	5910.0%	1	K.YHTINGHNCEVK.K

Q9DAS8

99.1%

637

69301

6.0

(Q9DAS8) 1600029N02Rik protein

*	TK090902_P14_mitoch_2D_step09.1933.1933.2	1.3017	0.113	1591.15	12	3570.0%	1	R.SHDGKLLVSADDFGK.V
*	TK090902_P14_mitoch_2D_step12.2984.2984.2	2.3915	0.487	1963.11	1	4670.0%	1	K.LVHLWSSETHQPVWSR.S

41_MOUSE

99.1%

858

95990

5.6

(P48193) Protein 4.1 (Band 4.1) (P4.1) (4.1R)

	TK090902_P14_mitoch_2D_step05.1991.1991.3	1.3314	1.0E-4	2873.23	7	1700.0%	1	K.FYPPDPAQLTEDITRYYLCLQLR.Q
	TK090902_P14_mitoch_2D_step05.2649.2649.2	1.3344	0.0857	1709.34	1	4290.0%	1	R.QASALIDRPAPHFER.T
*	TK090902_P14_mitoch_2D_step04.3018.3018.3	1.7394	0.2143	3464.08	2	1590.0%	1	K.EEGEGATNSGQQETQLEEASQAAAAEGSDQGEQK.L
*	TK090902_P14_mitoch_2D_step04.0378.0378.1	0.7257	0.0216	1498.29	108	2080.0%	1	R.AEREPEASQKPVR.R
	TK090902_P14_mitoch_2D_step13.1741.1741.1	2.1426	0.3688	1150.13	1	6110.0%	1	K.KHHASISELK.K
	TK090902_P14_mitoch_2D_step11.2251.2251.1	1.74	0.1773	1023.99	5	5000.0%	3	K.HHASISELK.K

O60310

99.1%

1441

162836

6.8

(O60310) Hypothetical protein KIAA0564 (Fragment)

*	TK090902_P14_mitoch_2D_step04.5093.5093.1	1.4119	0.0676	1082.01	21	3750.0%	5	R.EILINTLHK.Y
*	TK090902_P14_mitoch_2D_step09.2548.2548.2	2.4185	0.4908	2448.75	1	3260.0%	1	K.HGKEDPDNMPHVGGNTWAGGTGGR.D
*	TK090902_P14_mitoch_2D_step02.4541.4541.3	1.1514	0.1422	4241.1	7	860.0%	1	R.SESLSPYTTWLSTISDTDALLAEWDKSGVVTVDMGGHIR.L
*	TK090902_P14_mitoch_2D_step08.5043.5043.1	0.6987	0.0625	1344.83	140	2080.0%	1	R.DSGEDVSSPKHGK.E
*	TK090902_P14_mitoch_2D_step02.4178.4178.2	1.0562	0.0442	2900.04	25	1200.0%	1	R.SFVAMDTKDIPQILQQIFTSTMLSSV.-

Q9DCT8

99.1%

33.7%

208

22727

8.6

(Q9DCT8) 0610010I23Rik protein (Cysteine-rich protein 2)

*	TK090902_P14_mitoch_2D_step09.4657.4657.3	0.7593	0.0595	4564.4	30	730.0%	1	K.TLTPGGHAEHDGQPYCHKPCYGILFGPKGVNTGAVGSYIYDK.D
	TK090902_P14_mitoch_2D_step14.2798.2798.2	2.6472	0.4741	3141.7	3	1850.0%	2	K.TLTPGGHAEHDGQPYCHKPCYGILFGPK.G
	TK090902_P14_mitoch_2D_step15.2778.2778.3	1.5896	0.3399	3126.73	1	1480.0%	1	K.TLTPGGHAEHDGKPFCHKPCYATLFGPK.G

O88493

99.0%

2.1%

2657

286881

8.6

(O88493) Type VI collagen alpha 3 subunit

*	TK090902_P14_mitoch_2D_step06.3961.3961.2	2.2627	0.4889	2339.43	1	4000.0%	3	K.LLTPITTLTSQQIHQILASTR.Y
*	TK090902_P14_mitoch_2D_step12.4419.4419.1	1.3018	0.0957	1573.89	20	2920.0%	2	K.RFWYGGCGGNENR.F
*	TK090902_P14_mitoch_2D_step05.3193.3193.2	0.7873	0.1018	1882.14	4	2060.0%	1	R.QQAKPAATKPATTKPLAR.V
*	TK090902_P14_mitoch_2D_step15.3267.3267.2	1.0949	0.0336	2835.5	1	2080.0%	1	R.LEQKLLTPITTLTSQQIHQILASTR.Y

Q9CQZ5

98.9%

20.6%

131

15283

10.1

(Q9CQZ5) 2700038D15Rik protein

*	TK090902_P14_mitoch_2D_step03.3254.3254.2	1.6151	0.2661	1840.94	4	3670.0%	1	R.EVPNTVHLMQLDITVK.Q
*	TK090902_P14_mitoch_2D_step07.2348.2348.1	2.3826	0.3434	1390.78	1	5500.0%	4	R.FFHETETPRPK.D

Q9D7P7

98.9%

16.4%

207

23551

6.5

(Q9D7P7) 2300003G24Rik protein

*	TK090902_P14_mitoch_2D_step05.2624.2624.2	2.2521	0.2644	1628.16	1	4620.0%	1	R.APLDHELAQEPHLR.E
*	TK090902_P14_mitoch_2D_step09.2983.2983.2	2.81	0.4593	2284.33	1	3950.0%	1	K.YTCPHSAEILAAYQPAVHPR.-

Q9JKR6

98.9%

999

111181

5.2

(Q9JKR6) 170 kDa glucose regulated protein GRP170 precursor

*	TK090902_P14_mitoch_2D_step08.4131.4131.1	1.5258	0.0074	1558.22	2	4230.0%	1	K.ESGDKPEAQKPNEK.G
*	TK090902_P14_mitoch_2D_step07.2736.2736.2	2.6104	0.3679	1725.7	1	6150.0%	5	R.SRFPEHELIVDPQR.Q
*	TK090902_P14_mitoch_2D_step01.3856.3856.2	0.8545	0.0392	3010.59	7	1540.0%	1	R.SLAEDFAEQPIKDAVITVPAFFNQAER.R
	TK090902_P14_mitoch_2D_step06.3317.3317.2	2.8697	0.4456	1710.56	1	5670.0%	5	K.VAIVKPGVPMEIVLNK.E
*	TK090902_P14_mitoch_2D_step03.4705.4705.1	0.6674	0.096	1361.51	10	1500.0%	1	K.LEELTLRDLEK.Q
*	TK090902_P14_mitoch_2D_step05.4136.4136.3	1.0754	0.0639	4025.98	7	1000.0%	2	K.AHFNLDESGVLSLDRVESVFETLVEDSPEEESTLTK.L
*	TK090902_P14_mitoch_2D_step10.3408.3408.2	0.9771	0.019	3136.5	19	1380.0%	1	R.VPGPVQQALQSAEMSLDQIEQVILVGGATR.V

RS20_HUMAN

98.9%

119

13373

9.9

(P17075) 40S ribosomal protein S20 (P17075) 40S ribosomal protein S20

	TK090902_P14_mitoch_2D_step08.2982.2982.2	2.8235	0.4599	1509.99	1	7080.0%	2	K.RLIDLHSPSEIVK.Q

ACDV_MOUSE

98.8%

656

70876

8.7

(P50544) Acyl-CoA dehydrogenase, very-long-chain specific, mitochondrial precursor (EC 1.3.99.-) (VLCAD) (MVLCAD)

	TK090902_P14_mitoch_2D_step11.1739.1739.1	0.6721	0.2943	523.02	5	5000.0%	5	R.LYAR.E
*	TK090902_P14_mitoch_2D_step06.2848.2848.2	2.0963	0.5098	2273.89	1	3890.0%	5	R.IRENMASLQSSPQHQELFR.N
	TK090902_P14_mitoch_2D_step10.3632.3632.3	1.6035	0.1669	3102.82	119	1200.0%	1	K.GIVNEQFLLQRLADGAIDLYAMVVVLSR.A
*	TK090902_P14_mitoch_2D_step01.3057.3057.1	1.1976	0.1711	1505.21	1	2860.0%	1	K.NPFGNVGLLMGEAGK.Q
*	TK090902_P14_mitoch_2D_step14.3705.3705.2	0.8174	0.1277	3084.73	257	1150.0%	1	K.LARMAILQYVTESMAYMLSANMDQGFK.D

CH10_MOUSE

98.8%

31.7%

101

10831

8.3

(Q64433) 10 kDa heat shock protein, mitochondrial (Hsp10) (10 kDa chaperonin) (CPN10)

	TK090902_P14_mitoch_2D_step01.2364.2364.1	1.6203	0.263	1287.96	10	4230.0%	7	K.VLQATVVAVGSGGK.G
	TK090902_P14_mitoch_2D_step01.0079.0079.1	1.5844	0.3818	1078.67	4	4440.0%	2	K.VLLPEYGGTK.V
	TK090902_P14_mitoch_2D_step10.1877.1877.1	0.6865	0.0736	1036.97	107	2140.0%	2	R.KFLPLFDR.V

AKA2_HUMAN

98.8%

1103

122071

5.1

(Q9Y2D5) A-kinase anchor protein 2 (Protein kinase A anchoring protein 2) (PRKA2)

*	TK090902_P14_mitoch_2D_step07.3345.3345.3	1.4445	0.0732	3111.07	3	1960.0%	1	R.GPPQPLPAVQPSGPINMEETRPEGSYFSK.Y
*	TK090902_P14_mitoch_2D_step07.2665.2665.1	2.3151	0.3424	1589.92	1	4580.0%	1	R.KVRPSEEMLELEK.E

AKA2_MOUSE

98.8%

885

97501

5.4

(O54931) A-kinase anchor protein 2 (Protein kinase A anchoring protein 2) (PRKA2) (AKAP expressed in kidney and lung) (AKAP-KL)

*	TK090902_P14_mitoch_2D_step07.2665.2665.1	2.3151	0.3424	1589.92	1	4580.0%	1	R.KVRPSEEMIELEK.E
*	TK090902_P14_mitoch_2D_step06.3082.3082.2	2.1489	0.4924	3119.59	1	2410.0%	1	K.DHSSPFYSPSHNGLLADHHESLDNDVAR.E
*	TK090902_P14_mitoch_2D_step07.3705.3705.3	1.3773	0.1594	3018.4	8	1790.0%	1	K.GPSQPPTAAQPSGPVNMEETRPEGGYFSK.Y

Q9Z2W5

98.8%

16.5%

834

91861

9.0

(Q9Z2W5) Glucosidase I

*	TK090902_P14_mitoch_2D_step07.2476.2476.3	1.5751	0.0695	2793.99	12	1670.0%	1	R.LNSWFQHRPPGASPDRYLGLPGSLK.W
*	TK090902_P14_mitoch_2D_step15.3299.3299.2	1.1944	0.1529	2410.16	13	1900.0%	1	R.DLALPTLLNPKTLPSGLDDYPR.A
*	TK090902_P14_mitoch_2D_step09.4928.4928.3	1.1422	0.0344	4362.95	19	1060.0%	1	R.VTVEPQASGTPSFPLVSLFFYVVTDGQEVLLPEIGAKGQLK.S
*	TK090902_P14_mitoch_2D_step14.4033.4033.3	2.3247	0.4902	3163.35	1	2140.0%	1	R.AAHANPPTLLLPVVHMLEGHDPDDLAFLR.K
*	TK090902_P14_mitoch_2D_step14.2047.2047.2	1.2609	0.0526	1387.86	12	5000.0%	1	R.SLSASSLFYKQR.N
*	TK090902_P14_mitoch_2D_step02.3615.3615.3	0.8983	0.0858	4228.24	2	810.0%	1	R.VPPEFLVQRAAHANPPTLLLPVVHMLEGHDPDDLAFLR.K

POR3_MOUSE

98.7%

283

30753

8.8

(Q60931) Voltage-dependent anion-selective channel protein 3 (VDAC-3) (mVDAC3) (Outer mitochondrial membrane protein porin 3)

	TK090902_P14_mitoch_2D_step06.3144.3144.2	3.0085	0.312	2102.58	1	5000.0%	2	K.VNNASLIGLGYTQTLRPGVK.L

DCOL_MOUSE

98.7%

103

11740

6.8

(Q9CZL5) DcoH-like protein 2700061N24Rik

	TK090902_P14_mitoch_2D_step11.3023.3023.2	3.025	0.4406	1719.29	1	6250.0%	2	K.MNHHPEWFNVYNK.V
*	TK090902_P14_mitoch_2D_step01.1521.1521.1	1.045	0.0094	885.13	28	3570.0%	1	R.DQLIPGLK.A

NCB1_MOUSE

98.6%

459

53409

5.1

(Q02819) Nucleobindin 1 precursor (CALNUC)

	TK090902_P14_mitoch_2D_step05.2361.2361.2	2.388	0.4671	1832.61	1	5710.0%	1	R.DLAQYDAAHHEEFKR.Y
	TK090902_P14_mitoch_2D_step01.0047.0047.1	0.6891	0.0174	1091.91	47	2860.0%	1	R.EMEEERLR.M
*	TK090902_P14_mitoch_2D_step06.3860.3860.2	2.6694	0.2585	1935.17	1	6000.0%	3	R.YLQEVINVLETDGHFR.E

Q9D773

98.6%

306

33341

11.1

(Q9D773) Ribosomal protein, mitochondrial, L14

	TK090902_P14_mitoch_2D_step13.1237.1237.1	1.5745	0.3731	863.07	1	5620.0%	1	R.VHGIGGGHK.Q
*	TK090902_P14_mitoch_2D_step14.1472.1472.3	0.767	0.0775	2349.15	21	570.0%	1	-.MALCALTSALRSLSLASAAITAR.V
*	TK090902_P14_mitoch_2D_step10.2867.2867.1	0.9096	0.0121	836.4	1	5830.0%	1	K.YTVKPVK.M

CG51_HUMAN

98.6%

469

51976

6.9

(Q9Y512) Protein CGI-51

	TK090902_P14_mitoch_2D_step11.3746.3746.2	0.9826	0.0373	2434.33	32	2000.0%	1	K.QEILENKDVVVQHVHFDGLGR.T
	TK090902_P14_mitoch_2D_step05.2865.2865.1	2.2381	0.3458	1579.84	1	3850.0%	3	K.DVVVQHVHFDGLGR.T

CERU_MOUSE

98.6%

2.2%

1062

121162

5.8

(Q61147) Ceruloplasmin precursor (EC 1.16.3.1) (Ferroxidase)

*	TK090902_P14_mitoch_2D_step08.2056.2056.1	1.6731	0.2125	1169.04	1	5000.0%	5	R.IYHSHVDAPK.D
*	TK090902_P14_mitoch_2D_step04.2598.2598.2	0.9632	0.2403	1545.04	9	3330.0%	1	K.ALYFEYTDGTFSK.T

Q9HAM5

98.6%

199

21598

8.4

(Q9HAM5) Hypothetical protein

	TK090902_P14_mitoch_2D_step04.2614.2614.1	1.652	0.3462	1494.98	3	4000.0%	2	R.RPRCCTSWLTR.C

ROA2_MOUSE

98.6%

341

35993

8.6

(O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 / hnRNP B1)

	TK090902_P14_mitoch_2D_step05.2064.2064.1	1.6987	0.2972	1413.78	3	4090.0%	5	K.YHTINGHNAEVR.K

RL31_HUMAN

98.6%

125

14463

10.5

(P12947) 60S ribosomal protein L31 (P12947) 60S ribosomal protein L31

	TK090902_P14_mitoch_2D_step06.2330.2330.1	2.0513	0.3383	757.9	1	8330.0%	1	R.IHGVGFK.K

AAC4_MOUSE

98.6%

912

104977

5.4

(P57780) Alpha-actinin 4 (Non-muscle alpha-actinin 4) (F-actin cross linking protein)

	TK090902_P14_mitoch_2D_step06.2224.2224.1	1.9385	0.3341	1327.95	3	4000.0%	2	K.RDHALLEEQSK.Q
	TK090902_P14_mitoch_2D_step01.1990.1990.1	0.9641	0.1971	1430.13	170	2270.0%	1	R.TINEVENQILTR.D
	TK090902_P14_mitoch_2D_step08.2522.2522.1	1.7263	0.203	1301.0	29	3890.0%	2	R.HRPELIEYDK.L
	TK090902_P14_mitoch_2D_step03.2345.2345.1	1.2526	0.1659	896.07	15	4290.0%	2	R.EAILAIHK.E
*	TK090902_P14_mitoch_2D_step09.3121.3121.2	0.9993	0.0041	1860.33	282	2500.0%	1	K.QLETIDQLHLEYAKR.A
	TK090902_P14_mitoch_2D_step05.4615.4615.2	0.629	0.0512	2720.11	14	1040.0%	1	K.AIMTYVSSFYHAFSGAQKAETAANR.I

O00461

98.5%

696

81880

4.8

(O00461) 130 kDa golgi-localized phosphoprotein (GPP130/GIMPC)

*	TK090902_P14_mitoch_2D_step04.2246.2246.1	2.1483	0.297	1533.68	1	4580.0%	3	K.AHQDIHTQLQDVK.Q

Q9D8S9

98.5%

137

14379

8.8

(Q9D8S9) 1810037G04Rik protein

*	TK090902_P14_mitoch_2D_step06.3505.3505.2	2.8735	0.4347	2298.28	1	4050.0%	1	R.LVHEALSEELAGPVHALAIQAK.T

Q9JJF9

98.4%

523

58071

7.3

(Q9JJF9) Brain cDNA, clone MNCb-3763, similar to AC004410 fos39554_1 (Homo sapiens)

*	TK090902_P14_mitoch_2D_step12.3057.3057.2	2.8435	0.43	1680.75	1	5380.0%	1	K.AVVVHWGPCHFLEK.A

Q8R2M5

98.4%

536

60129

5.7

(Q8R2M5) Hypothetical 60.1 kDa protein (Fragment)

*	TK090902_P14_mitoch_2D_step01.1538.1538.1	0.9646	0.087	1319.1	1	4090.0%	1	R.TVMVHGFTLGEK.G
*	TK090902_P14_mitoch_2D_step04.3282.3282.3	1.0983	0.0376	3091.26	2	1110.0%	1	R.WWIAESNVFTEVTIGPSVLSAARDDISK.L
*	TK090902_P14_mitoch_2D_step04.2839.2839.2	2.7994	0.4348	2034.25	1	4690.0%	1	K.TKDEYLINSQTTEHIIK.L

Q9D5G9

98.4%

12.6%

159

17877

10.6

(Q9D5G9) 4930442D21Rik protein

*	TK090902_P14_mitoch_2D_step14.2561.2561.2	2.5249	0.4538	2381.25	1	3680.0%	1	R.KPFHTDNPSIQGQWHPFTNK.R

RL26_HUMAN

98.3%

145

17258

10.6

(Q02877) 60S ribosomal protein L26 (Q02877) 60S ribosomal protein L26

	TK090902_P14_mitoch_2D_step05.2157.2157.1	1.2426	0.1755	1421.5	16	2690.0%	2	K.ANGTTVHVGIHPSK.V

SFX5_MOUSE

98.3%

181

19968

9.7

(Q925N0) Sideroflexin 5 (Fragment)

	TK090902_P14_mitoch_2D_step11.2689.2689.2	1.9751	0.3833	2023.56	1	3240.0%	2	K.HGTLRPGVTNEQLWSAQK.I

Q9CXI5

98.3%

20.7%

179

20374

8.1

(Q9CXI5) 3230402M22Rik protein

	TK090902_P14_mitoch_2D_step03.4884.4884.1	0.8133	0.0074	1306.32	28	1500.0%	1	K.INELMPKYAPK.A
	TK090902_P14_mitoch_2D_step08.2611.2611.1	0.9494	0.0408	1122.81	9	3120.0%	1	K.KDSQICELK.Y
	TK090902_P14_mitoch_2D_step13.2356.2356.2	3.0374	0.3964	1926.51	1	6250.0%	2	K.IINEVSKPLAHHIPVEK.I

CA13_MOUSE

98.3%

1464

138944

6.5

(P08121) Collagen alpha 1(III) chain precursor

	TK090902_P14_mitoch_2D_step12.1935.1935.1	0.8075	0.09	977.15	7	2500.0%	1	R.GFDGRNGEK.G
*	TK090902_P14_mitoch_2D_step08.2899.2899.1	1.1306	0.0121	1507.86	27	2350.0%	1	R.GETGPAGPSGAPGPAGAR.G
*	TK090902_P14_mitoch_2D_step10.2572.2572.1	2.274	0.3247	1344.83	1	6500.0%	1	R.KHWWTDSGAEK.K
*	TK090902_P14_mitoch_2D_step04.2649.2649.3	1.7469	0.0939	2836.29	27	1250.0%	1	R.GGPGGPGLPGPAGKNGETGPQGPPGPTGPAGDK.G
*	TK090902_P14_mitoch_2D_step12.1768.1768.3	1.1191	0.1265	2324.31	31	1060.0%	1	R.GETGPAGPSGAPGPAGARGAPGPQGPR.G

O09003

98.3%

17.4%

190

22674

6.7

(O09003) B-IND1 protein (Fragment)

*	TK090902_P14_mitoch_2D_step13.5049.5049.2	0.8949	0.0192	3148.89	5	1600.0%	1	K.GDNVYEFHLEFLDLVKPEPAYRLTQR.Q
*	TK090902_P14_mitoch_2D_step06.2701.2701.1	1.4933	0.2618	958.68	4	5000.0%	2	K.GSHWWER.L

PMG1_MOUSE

98.2%

253

28701

7.2

(Q9DBJ1) Phosphoglycerate mutase 1 (EC 5.4.2.1) (EC 5.4.2.4) (EC 3.1.3.13) (Phosphoglycerate mutase isozyme B) (PGAM-B) (BPG-dependent PGAM 1)

	TK090902_P14_mitoch_2D_step08.3274.3274.2	2.4695	0.4518	2118.78	1	4710.0%	4	K.NLKPIKPMQFLGDEETVR.K

Q61484

98.2%

8.8%

1231

132114

6.2

(Q61484) Desmoyokin (Fragment)

	TK090902_P14_mitoch_2D_step03.2260.2260.1	1.2779	0.0073	1158.99	47	4000.0%	2	K.VKGDVDVSLPK.V
	TK090902_P14_mitoch_2D_step01.2501.2501.1	1.3915	0.1121	1268.76	15	4000.0%	1	K.ISMPDVDLHLK.G
*	TK090902_P14_mitoch_2D_step15.1426.1426.2	0.5186	0.012	1261.75	33	1360.0%	1	K.GEGAEVDVNLQK.A
*	TK090902_P14_mitoch_2D_step15.1683.1683.1	0.7074	0.0333	1214.56	1	2000.0%	1	K.VSLPDVDLDLK.G
*	TK090902_P14_mitoch_2D_step12.4673.4673.2	1.1881	0.1324	1987.77	3	3610.0%	1	K.GSRVDIETPNLEGTLTGPK.I
	TK090902_P14_mitoch_2D_step01.0459.0459.1	1.4166	0.1734	1270.42	5	4550.0%	4	K.AEGPEVDVNLPK.A
*	TK090902_P14_mitoch_2D_step13.2386.2386.2	0.6007	0.013	2318.28	84	1000.0%	1	K.GPKMDISAPDVEVHGPEWNLK.M
*	TK090902_P14_mitoch_2D_step01.2501.2501.1	1.3915	0.1121	1268.76	15	4000.0%	1	K.ISMPDVDLHIK.G

Q9CPW2

98.2%

174

18766

6.0

(Q9CPW2) B230118G17Rik protein

*	TK090902_P14_mitoch_2D_step05.2605.2605.1	1.9083	0.325	1425.74	2	4550.0%	3	R.NFYVDGHIPKPH.-

Q9EQ18

98.1%

389

43256

5.4

(Q9EQ18) SIR2L2

*	TK090902_P14_mitoch_2D_step07.2088.2088.2	2.4043	0.4455	2564.91	1	3120.0%	1	R.REHANIDAQSGSQAPNPSTTISPGK.S

CTE1_MOUSE

97.9%

15.3%

419

46136

6.6

(O55137) Cytosolic acyl coenzyme A thioester hydrolase, inducible (EC 3.1.2.2) (Long chain acyl-CoA thioester hydrolase) (Long chain acyl-CoA hydrolase) (CTE-I)

	TK090902_P14_mitoch_2D_step03.3430.3430.2	0.9558	0.1796	2025.94	1	3120.0%	1	R.SDTTFLFLVGQDDHNWK.S
	TK090902_P14_mitoch_2D_step05.2548.2548.1	1.6764	0.3022	897.16	1	6430.0%	3	R.HFLAPGVR.R
	TK090902_P14_mitoch_2D_step06.4086.4086.3	1.4386	0.0174	4286.46	2	1320.0%	1	R.ADSHGELDLARTPALGGSFSGLEPMGLLWAMEPDRPFWR.L

AUP1_MOUSE

97.9%

410

46121

8.4

(P70295) Ancient ubiquitous protein 1 precursor

*	TK090902_P14_mitoch_2D_step14.2611.2611.3	2.8759	0.4549	3023.33	1	2500.0%	1	R.LRPQSVQSSFPSPPSPSSDVQLTTLAHR.V

O08795

97.9%

22.5%

521

58793

4.5

(O08795) Alpha glucosidase II, beta subunit

	TK090902_P14_mitoch_2D_step02.3360.3360.3	0.9751	0.0346	4756.03	2	860.0%	1	R.SLEQEISFDFGPSGEFAYLYSQCYELTTNEYVYRLCPFK.L
	TK090902_P14_mitoch_2D_step13.3910.3910.3	1.2159	0.0465	4110.12	5	1360.0%	1	R.SLEQEISFDFGPSGEFAYLYSQCYELTTNEYVYR.L
	TK090902_P14_mitoch_2D_step06.3476.3476.3	1.7662	0.2949	4470.98	2	1350.0%	1	R.GVSLSNHHFYEESKPFTCLDGTATIPFDQVNDDYCDCK.D
	TK090902_P14_mitoch_2D_step05.3047.3047.2	2.1766	0.5106	2152.97	1	5000.0%	1	K.HGGSPTSLGTWGSWAGPDHDK.F
	TK090902_P14_mitoch_2D_step04.2291.2291.1	1.9401	0.3192	1304.04	1	5500.0%	2	R.KLWEEQQAAAK.A
	TK090902_P14_mitoch_2D_step05.3012.3012.1	1.9394	0.186	1061.2	8	5000.0%	4	K.KILIEEWK.T

RL4_MOUSE

97.8%

419

47154

11.0

(Q9D8E6) 60S ribosomal protein L4 (L1)

	TK090902_P14_mitoch_2D_step04.2365.2365.1	1.9776	0.3192	1189.04	1	5450.0%	2	K.KLEAAATALATK.S
	TK090902_P14_mitoch_2D_step01.2784.2784.1	0.7654	0.1543	1269.16	18	1820.0%	1	R.NIPGITLLNVSK.L

Q9D8L6

97.8%

14.6%

137

14988

7.4

(Q9D8L6) 1110004C05Rik protein

	TK090902_P14_mitoch_2D_step05.2540.2540.2	2.222	0.4562	2162.0	1	4470.0%	1	R.IKEEYEVAEMGAPHGSASVR.T

RL15_MOUSE

97.8%

14.0%

214

24668

11.1

(Q9CZM2) 60S ribosomal protein L15

	TK090902_P14_mitoch_2D_step04.2567.2567.1	1.4045	0.1794	1564.87	1	5000.0%	2	R.NPDTQWITKPVHK.H
	TK090902_P14_mitoch_2D_step11.2178.2178.2	1.0613	0.0951	1707.71	217	2330.0%	1	K.GATYGKPVHHGVNQLK.F
	TK090902_P14_mitoch_2D_step13.2128.2128.2	2.8108	0.4277	1722.15	1	5770.0%	1	R.RNPDTQWITKPVHK.H

PRAX_MOUSE

97.7%

1391

147688

8.1

(O55103) Periaxin

*	TK090902_P14_mitoch_2D_step05.3813.3813.2	1.028	0.0208	2753.37	8	1600.0%	1	K.MVTGALGTPADLAPVDVEFSFPKFSR.L
*	TK090902_P14_mitoch_2D_step02.3012.3012.1	1.0693	0.1253	1484.44	23	2500.0%	1	K.LPKMPEMAVPDVR.L
	TK090902_P14_mitoch_2D_step01.1419.1419.1	1.2812	0.0157	925.53	9	6430.0%	3	Q.LPEVQLPK.M
*	TK090902_P14_mitoch_2D_step01.1890.1890.1	1.5577	0.3309	1508.97	1	4640.0%	1	R.LPSAEVGVPQVSVPK.G

RN5A_HUMAN

97.7%

741

83533

6.7

(Q05823) 2-5A-dependent ribonuclease (EC 3.1.26.-) (2-5A-dependent RNase) (Ribonuclease L) (RNase L) (Ribonuclease 4)

*	TK090902_P14_mitoch_2D_step13.1304.1304.1	1.252	0.0699	1125.88	25	4440.0%	3	K.KGSISFEDLK.A

Q8R016

97.7%

455

52511

6.5

(Q8R016) Similar to bleomycin hydrolase

*	TK090902_P14_mitoch_2D_step10.2736.2736.2	2.4543	0.4003	2729.93	1	2920.0%	3	R.ATVQGAQHVFQHVVPQEGKPVTNQK.S

Q9CY59

97.7%

29.8%

302

33632

9.1

(Q9CY59) 2500002N19Rik protein

	TK090902_P14_mitoch_2D_step13.4832.4832.2	2.328	0.436	2561.32	1	3640.0%	5	R.FALPSPQHILGLPIGQHIYLSTR.I
	TK090902_P14_mitoch_2D_step05.4924.4924.2	0.9044	0.1753	2964.55	1	1540.0%	1	R.IDGNLVIRPYTPVSSDDDKGFVDLVVK.V
	TK090902_P14_mitoch_2D_step05.3287.3287.2	1.9046	0.4836	2565.77	1	3330.0%	1	R.AVLKDPNDHTVCYLLFANQSEK.D
*	TK090902_P14_mitoch_2D_step14.1516.1516.3	0.9687	0.1044	1856.0	13	1470.0%	1	R.VGTPDLASWSPTLPQAGR.E

Q9WUB2

97.6%

10946

10.0

(Q9WUB2) NADH-ubiquinone oxidoreductase B8 subunit

	TK090902_P14_mitoch_2D_step08.3179.3179.1	1.5418	0.218	1144.53	2	5000.0%	4	K.AHPNLPILIR.E
	TK090902_P14_mitoch_2D_step14.2638.2638.1	1.4194	0.2498	1273.57	2	4000.0%	2	K.KAHPNLPILIR.E

LKHA_MOUSE

97.4%

610

68890

6.4

(P24527) Leukotriene A-4 hydrolase (EC 3.3.2.6) (LTA-4 hydrolase) (Leukotriene A(4) hydrolase)

*	TK090902_P14_mitoch_2D_step07.1969.1969.2	1.1531	0.0794	1581.59	1	4170.0%	1	K.SHDQAVHTYQEHK.A
*	TK090902_P14_mitoch_2D_step03.4469.4469.3	0.6876	0.1439	4425.87	3	330.0%	2	K.VDLLNQVDWNAWLYAPGLPPVKPNYDVTLTNACIALSQR.W

Q61646

97.3%

347

38752

6.3

(Q61646) Haptoglobin

*	TK090902_P14_mitoch_2D_step03.3399.3399.2	1.0151	0.106	2525.05	52	1140.0%	1	R.AEGDGVYTLNDEKQWVNTVAGEK.L
*	TK090902_P14_mitoch_2D_step07.2300.2300.2	1.0832	0.0756	1741.5	11	3000.0%	1	K.VVLHPNHSVVDIGLIK.L
*	TK090902_P14_mitoch_2D_step06.3641.3641.2	2.2923	0.416	2129.13	1	3680.0%	2	R.HGLTTGATLISDQWLLTTAK.N

Q91WS0

97.3%

26.9%

108

12097

9.1

(Q91WS0) Similar to uncharacterized hematopoietic stem/progenitor cells protein MDS029 (Hypothetical 12.1 kDa protein)

	TK090902_P14_mitoch_2D_step09.2877.2877.1	2.1736	0.3105	1322.01	1	5500.0%	4	K.KFPFCDGAHIK.H
	TK090902_P14_mitoch_2D_step04.3033.3033.2	1.0214	0.0964	2127.47	5	2650.0%	1	K.VVHAFDMEDLGDKAVYCR.C

Q9D8T7

97.2%

112

12645

9.8

(Q9D8T7) 1810035L17Rik protein

	TK090902_P14_mitoch_2D_step10.2560.2560.1	1.5643	0.2955	1230.07	1	6670.0%	2	R.EHFAQFGHVR.R

TPM1_MOUSE

97.2%

284

32681

4.7

(P58771) Tropomyosin 1 alpha chain (Alpha-tropomyosin)

	TK090902_P14_mitoch_2D_step04.2885.2885.1	1.0036	0.2518	1399.82	30	2500.0%	1	R.RIQLVEEELDR.A
	TK090902_P14_mitoch_2D_step06.2934.2934.1	1.9569	0.3084	1316.14	1	6000.0%	2	R.KLVIIESDLER.A
	TK090902_P14_mitoch_2D_step04.3662.3662.1	1.2084	0.0144	1462.18	2	3850.0%	1	K.KATDAEADVASLNR.R

2ABA_HUMAN

97.2%

447

51692

6.2

(Q00007) Serine/threonine protein phosphatase 2A, 55 KDA regulatory subunit B, alpha isoform (PP2A, subunit B, B-alpha isoform) (PP2A, subunit B, B55-alpha isoform) (PP2A, subunit B, PR55-alpha isoform) (PP2A, subunit B, R2-alpha isoform)

*	TK090902_P14_mitoch_2D_step13.2165.2165.1	1.912	0.3161	1102.85	2	6250.0%	1	K.ILHTAWHPK.E

Q99KN9

97.1%

531

56758

5.9

(Q99KN9) Similar to KIAA0171 gene product (Fragment)

*	TK090902_P14_mitoch_2D_step04.5099.5099.1	0.7603	0.1406	1425.26	46	1670.0%	1	R.SQNTDMVQKSASK.T
	TK090902_P14_mitoch_2D_step11.2215.2215.2	2.607	0.4251	1611.48	1	5000.0%	1	K.HIHITQATETTTTR.H

APA1_MOUSE

97.0%

15.9%

264

30587

5.9

(Q00623) Apolipoprotein A-I precursor (Apo-AI)

*	TK090902_P14_mitoch_2D_step13.1376.1376.3	1.0862	0.029	2320.77	66	1840.0%	1	K.ARPALEDLRHSLMPMLETLK.T
*	TK090902_P14_mitoch_2D_step04.1989.1989.1	1.1777	0.0452	1332.79	33	3500.0%	1	K.SNPTLNEYHTR.A
*	TK090902_P14_mitoch_2D_step04.1970.1970.1	1.5381	0.3315	1298.0	1	5500.0%	1	R.TQLAPHSEQMR.E

EF2_MOUSE

97.0%

857

95183

6.8

(P58252) Elongation factor 2 (EF-2)

	TK090902_P14_mitoch_2D_step05.2415.2415.1	1.3314	0.2082	1307.93	5	3640.0%	2	R.NMSVIAHVDHGK.S
	TK090902_P14_mitoch_2D_step11.3139.3139.2	1.6078	0.2784	2120.68	1	3610.0%	2	K.RGHVFEESQVAGTPMFVVK.A
	TK090902_P14_mitoch_2D_step15.0101.0101.1	0.2959	0.0037	445.52	4	1670.0%	5	K.SPNK.H
	TK090902_P14_mitoch_2D_step08.1719.1719.1	0.6716	0.031	514.73	2	5000.0%	3	K.KLPR.T
	TK090902_P14_mitoch_2D_step03.1448.1448.2	1.0286	0.2064	1740.85	86	2140.0%	1	R.QAIAERIKPVLMMNK.M
	TK090902_P14_mitoch_2D_step08.1862.1862.2	1.4351	0.1765	1276.41	1	5500.0%	5	R.YFDPANGKFSK.S

Q99J39

96.9%

492

54736

8.9

(Q99J39) Similar to malonyl-CoA decarboxylase

	TK090902_P14_mitoch_2D_step13.2224.2224.1	1.522	0.3548	938.67	2	5000.0%	1	R.GLFHHISK.L

Q9QWJ7

96.9%

1.5%

2154

250928

5.5

(Q9QWJ7) Non-erythrocyte beta spectrin

	TK090902_P14_mitoch_2D_step04.2350.2350.1	1.4696	0.1382	1533.8	4	4550.0%	1	K.KQQMLENQMEVR.K
	TK090902_P14_mitoch_2D_step08.3282.3282.2	1.8679	0.2497	2320.66	1	3000.0%	7	R.MPLATSTDHGHNLQTVQLLIK.K

NPS1_MOUSE

96.8%

284

33363

9.4

(O55125) NipSnap1 protein

*	TK090902_P14_mitoch_2D_step09.3519.3519.2	1.4271	0.0012	2790.25	3	1960.0%	2	K.IQFHNVKPECLDAYNSLTEAVLPK.L

MPCP_MOUSE

96.8%

357

39632

9.3

(Q8VEM8) Phosphate carrier protein, mitochondrial precursor (PTP)

	TK090902_P14_mitoch_2D_step13.2244.2244.2	2.5689	0.4137	1589.37	1	5380.0%	1	R.LPRPPPPEMPESLK.K
	TK090902_P14_mitoch_2D_step15.2071.2071.2	1.9461	0.3694	1717.36	1	3930.0%	1	R.LPRPPPPEMPESLKK.K

CAH4_MOUSE

96.8%

305

34351

8.2

(Q64444) Carbonic anhydrase IV precursor (EC 4.2.1.1) (Carbonate dehydratase IV) (CA-IV)

*	TK090902_P14_mitoch_2D_step10.3339.3339.2	2.5668	0.4245	2354.76	1	3570.0%	7	K.GFQPLVEALPSISKPHSTSTVR.E

LMG3_MOUSE

96.7%

1581

172317

7.0

(Q9R0B6) Laminin gamma-3 chain precursor (Laminin 12 gamma 3)

	TK090902_P14_mitoch_2D_step10.4823.4823.3	1.1883	0.0844	3134.03	92	950.0%	1	K.ALATVKQVIGDAAPHLGLLVTPEAMNFQAR.G
*	TK090902_P14_mitoch_2D_step15.1736.1736.3	1.039	0.0018	2283.0	145	1050.0%	1	K.DPRVLQSYYYAVSDFSVGGR.C
*	TK090902_P14_mitoch_2D_step09.4229.4229.3	2.8317	0.4474	4744.19	1	1520.0%	1	R.RHDASYLTDFHSPDDSTWWQSPSMAFGVQYPTSVNLTLSLGK.A
*	TK090902_P14_mitoch_2D_step06.1526.1526.2	0.7946	0.0293	1723.86	99	2140.0%	1	K.CAPCSCDLRGSVSEK.T

Q9CQ99

96.7%

115

11651

4.5

(Q9CQ99) 2700049I22Rik protein (RIKEN cDNA 2700049I22 gene)

*	TK090902_P14_mitoch_2D_step01.2503.2503.1	2.1096	0.2917	1245.87	1	5910.0%	1	K.NIEDVIAQGVGK.L

Q9DCT9

96.7%

18.3%

616

68008

7.6

(Q9DCT9) 0610010I20Rik protein

	TK090902_P14_mitoch_2D_step04.3019.3019.2	2.2685	0.3074	2000.17	2	3680.0%	1	K.AAQIGAHTLSGACLDPAAFK.E
	TK090902_P14_mitoch_2D_step14.3193.3193.3	1.866	0.146	3110.6	33	1630.0%	1	K.CLPLCAPRCSSTSAVPQITTHYTVHPR.E
	TK090902_P14_mitoch_2D_step05.2077.2077.1	1.2358	0.2284	1485.85	1	4550.0%	1	R.LQINAQNCVHCK.T
	TK090902_P14_mitoch_2D_step13.3613.3613.2	1.027	0.1046	2217.44	9	2110.0%	2	R.IPVPILPGLPMNNHGNYIVR.L
	TK090902_P14_mitoch_2D_step12.1891.1891.1	1.7983	0.1413	1404.03	1	5420.0%	4	K.HHPSIQPTLEGGK.R
	TK090902_P14_mitoch_2D_step07.2505.2505.1	1.3397	0.1097	1526.06	1	3850.0%	2	K.VTVFAEGCHGHLAK.Q
	TK090902_P14_mitoch_2D_step03.2065.2065.1	0.7464	0.0673	806.91	35	3330.0%	1	K.RIAYGAR.A
	TK090902_P14_mitoch_2D_step13.1870.1870.2	1.817	0.1734	1558.22	4	4230.0%	1	K.HHPSIQPTLEGGKR.I

Q61302

96.7%

1.2%

1848

202576

6.6

(Q61302) Erythroid ankyrin

*	TK090902_P14_mitoch_2D_step06.3633.3633.2	1.016	0.0614	2411.77	1	2730.0%	3	K.SGLTPLHLVSQEGHVPVADVLIK.H

HB2A_MOUSE

96.7%

265

30128

7.2

(P14483) H-2 class II histocompatibility antigen, A beta chain precursor

	TK090902_P14_mitoch_2D_step06.3192.3192.2	2.1115	0.5077	2420.89	1	3250.0%	1	R.TEALNHHNTLVCSVTDFYPAK.I

CTNB_MOUSE

96.5%

781

85471

5.9

(Q02248) Beta-catenin

	TK090902_P14_mitoch_2D_step14.3017.3017.1	2.266	0.2877	1439.92	1	4090.0%	2	K.LLHPPSHWPLIK.A
	TK090902_P14_mitoch_2D_step11.2271.2271.3	1.6166	0.0231	2523.94	32	1900.0%	1	R.MEEIVEGCTGALHILARDVHNR.I

Q91YT0

96.5%

464

50834

8.2

(Q91YT0) Similar to NADH dehydrogenase (Ubiquinone) flavoprotein 1 (51kD)

	TK090902_P14_mitoch_2D_step07.3285.3285.2	2.1527	0.4426	2639.67	1	3410.0%	4	K.LFNISGHVNHPCTVEEEMSVPLK.E
	TK090902_P14_mitoch_2D_step07.2772.2772.1	1.614	0.1853	1551.93	24	3330.0%	3	K.WSFMNKPSDGRPK.Y
*	TK090902_P14_mitoch_2D_step09.2471.2471.2	2.5659	0.2448	1201.52	1	6250.0%	2	R.HFRPELEDR.M

IDHC_HUMAN

96.5%

414

46659

7.0

(O75874) Isocitrate dehydrogenase [NADP] cytoplasmic (EC 1.1.1.42) (Oxalosuccinate decarboxylase) (IDH) (NADP+-specific ICDH) (IDP)

*	TK090902_P14_mitoch_2D_step09.2424.2424.3	1.3625	0.1957	2667.56	47	1790.0%	1	K.EKLIFPYVELDLHSYDLGIENR.D
*	TK090902_P14_mitoch_2D_step07.3975.3975.2	2.2252	0.3321	1880.7	1	4060.0%	3	K.GQETSTNPIASIFAWTR.G

Q9EQR0

96.5%

2504

272426

6.6

(Q9EQR0) Fatty acid synthase

*	TK090902_P14_mitoch_2D_step08.2248.2248.1	0.7234	0.1273	650.45	11	4000.0%	1	K.EPGGHR.I
*	TK090902_P14_mitoch_2D_step03.4793.4793.3	1.0981	0.1052	4279.21	308	610.0%	1	R.LLLEVSYEAIVDGGINPASLRGTNTGVWVGVSGSEASEALSR.D
*	TK090902_P14_mitoch_2D_step15.2139.2139.2	0.973	0.0158	1289.58	12	4550.0%	1	R.ALQTKATQQGLK.A
*	TK090902_P14_mitoch_2D_step15.2450.2450.2	2.1809	0.4376	2018.81	1	2890.0%	1	R.QAPAPTAHAALPHLLHASGR.T
*	TK090902_P14_mitoch_2D_step12.4200.4200.2	0.9527	0.1257	2986.82	183	1000.0%	1	R.GYDYGPQFQGICEATLEGEQGKLLWK.D
*	TK090902_P14_mitoch_2D_step14.3713.3713.3	2.6046	0.4513	3358.45	1	2160.0%	1	K.VLLSLEHGVWAPNLHFHNPNPEIPALLDGR.L

CALM_HUMAN

96.4%

148

16706

4.2

(P02593) Calmodulin (P02593) Calmodulin

	TK090902_P14_mitoch_2D_step01.2058.2058.1	1.9635	0.2951	959.08	5	5710.0%	2	K.EAFSLFDK.D

CU80_MOUSE

96.4%

429

49429

6.5

(Q8VHI3) Protein C21orf80 homolog

	TK090902_P14_mitoch_2D_step14.1931.1931.2	0.9045	0.1371	1782.92	28	2000.0%	1	K.DGGVAIIDQWICAHAR.F
*	TK090902_P14_mitoch_2D_step05.2375.2375.1	1.9407	0.3012	1383.1	1	5000.0%	2	R.AENLLHDHYGGR.E

UBCI_HUMAN

96.3%

8.2%

158

18007

8.7

(P50550) Ubiquitin-like protein SUMO-1 conjugating enzyme (EC 6.3.2.19) (SUMO-1-protein ligase) (Ubiquitin carrier protein) (Ubiquitin-conjugating enzyme UbcE2A) (P18) (P50550) Ubiquitin-like protein SUMO-1 conjugating enzyme (EC 6.3.2.19) (SUMO-1-protein ligase) (Ubiquitin carrier protein) (Ubiquitin-conjugating enzyme UbcE2A) (P18)

	TK090902_P14_mitoch_2D_step10.2955.2955.1	1.7666	0.2988	1444.99	1	4170.0%	2	R.KDHPFGFVAVPTK.N

RT22_MOUSE

96.3%

359

41192

8.6

(Q9CXW2) Mitochondrial 28S ribosomal protein S22 (MRP-S22)

*	TK090902_P14_mitoch_2D_step13.2666.2666.2	1.4788	0.1243	1759.01	5	3210.0%	2	K.TFRPAIQPLKPPTYK.L
*	TK090902_P14_mitoch_2D_step07.2073.2073.1	1.8018	0.291	1412.68	1	5000.0%	1	K.VHHQTYEDIDR.H

Q62467

96.3%

1681

192158

7.4

(Q62467) Voltage-gated sodium channel protein

*	TK090902_P14_mitoch_2D_step15.3512.3512.2	0.8374	0.0351	3005.86	21	1400.0%	1	K.QSSSSECSTVDIAISEEEEMVYEHEK.S
	TK090902_P14_mitoch_2D_step10.3977.3977.1	1.7943	0.304	1445.85	1	4550.0%	2	R.IHCLDILLAFTK.R
*	TK090902_P14_mitoch_2D_step05.3807.3807.3	1.5367	0.012	3876.59	4	1690.0%	1	R.SVPTEATDQICDPSVKENISGHTLSELSNTQTFLR.Y
*	TK090902_P14_mitoch_2D_step06.2045.2045.3	0.9589	0.1304	3824.2	33	1250.0%	1	K.VYMIFFVMISFWFAFYLTSLFLGILTMTYEK.E
*	TK090902_P14_mitoch_2D_step14.2536.2536.2	0.6799	0.2079	2253.4	3	1320.0%	1	K.IIPLNHGLQSIVMTLAQCLK.K
*	TK090902_P14_mitoch_2D_step11.4646.4646.3	1.2177	0.0077	4511.98	23	790.0%	1	K.TTLPTVSVFLVCLMIWLLFSVIGVQLFAGKFYECIDPTK.G
*	TK090902_P14_mitoch_2D_step12.4360.4360.3	0.9118	0.0753	4339.56	9	710.0%	1	K.TCCKIVENSWFECFIGLVTLLCTGTLALEDIYIDQR.K

HA13_MOUSE

96.3%

362

40620

5.5

(P14426) H-2 class I histocompatibility antigen, D-K alpha chain precursor (H-2D(K))

	TK090902_P14_mitoch_2D_step09.2084.2084.1	1.7573	0.3011	1282.67	1	5500.0%	1	K.HKWEQAGAAER.D

PDP1_HUMAN

96.3%

8.4%

538

61220

6.8

(Q9P0J1) [Pyruvate dehydrogenase [Lipoamide]]-phosphatase 1, mitochondrial precursor (EC 3.1.3.43) (PDP 1) (Pyruvate dehydrogenase phosphatase, catalytic subunit 1) (PDPC 1)

*	TK090902_P14_mitoch_2D_step10.3033.3033.2	2.0863	0.4909	2300.12	1	4000.0%	2	R.IVGEYLTGMHHQQPIAVGGYK.V
*	TK090902_P14_mitoch_2D_step11.3793.3793.2	1.4926	7.0E-4	2987.25	3	2170.0%	1	R.IYGTACYCHHKHLCCSSSYIPQSR.L

Q9D7V9

96.3%

362

40119

6.3

(Q9D7V9) 2210023K21Rik protein

	TK090902_P14_mitoch_2D_step06.2332.2332.1	1.3738	0.2855	1585.73	1	4170.0%	3	R.VETNYDHWKPAPK.V

CLI1_MOUSE

96.3%

241

27013

5.2

(Q9Z1Q5) Chloride intracellular channel protein 1 (Nuclear chloride ion channel 27) (NCC27) (p64 CLCP)

	TK090902_P14_mitoch_2D_step05.2612.2612.1	1.6212	0.152	1097.53	1	5620.0%	5	K.LHIVQVVCK.K
	TK090902_P14_mitoch_2D_step14.1211.1211.1	1.241	0.0128	1406.82	9	3180.0%	1	R.GVHRYLSNAYAR.E

Q9CRK7

96.2%

118

12862

6.8

(Q9CRK7) 9430095H01Rik protein (Fragment)

	TK090902_P14_mitoch_2D_step11.2971.2971.2	1.778	0.4702	2082.78	1	2780.0%	3	K.TITGFQTHTTPVLLAHGER.A

Q9UHN7

96.2%

1004

111597

6.4

(Q9UHN7) C-Cbl-associated protein SH3P12

	TK090902_P14_mitoch_2D_step13.2272.2272.2	2.4605	0.4259	1888.25	1	5000.0%	1	R.HTGVIPTHHQFITNER.F

RM03_MOUSE

96.2%

348

39110

9.6

(Q99N95) Mitochondrial 60S ribosomal protein L3 (L3mt)

*	TK090902_P14_mitoch_2D_step07.2108.2108.1	0.9985	0.0357	1215.99	97	2270.0%	2	R.RPGAISTGDIAR.V
	TK090902_P14_mitoch_2D_step06.2501.2501.1	1.5523	0.0765	1536.53	1	4230.0%	1	K.HNIIYVNGSVPGHK.N
*	TK090902_P14_mitoch_2D_step15.3086.3086.3	2.7981	0.4607	3527.95	1	2180.0%	1	K.IFHVTDNAVIKPGTPLYAAHFRPGQYVDVTAK.T

P70271

96.1%

330

35674

8.0

(P70271) RIL protein

*	TK090902_P14_mitoch_2D_step11.2449.2449.2	2.67	0.3777	1852.99	1	5670.0%	1	K.GCHDHLTLSVSRPENK.N

Q9DCT2

96.1%

10.3%

263

30207

6.9

(Q9DCT2) 0610010M09Rik protein

*	TK090902_P14_mitoch_2D_step13.1630.1630.1	1.1876	0.0362	1464.85	98	2920.0%	1	R.GAGRPSVLWQHVR.R
	TK090902_P14_mitoch_2D_step08.1888.1888.1	0.6261	0.0813	1489.74	94	1250.0%	1	R.VVAEPVELAQEFR.K
	TK090902_P14_mitoch_2D_step04.3213.3213.2	2.6334	0.3913	1644.59	1	5000.0%	1	K.RVVAEPVELAQEFR.K

TARA_MOUSE

96.0%

561

64762

6.4

(Q99KW3) Protein Tara (Trio-associated repeat on actin) (Fragment)

*	TK090902_P14_mitoch_2D_step08.2511.2511.2	2.4007	0.4171	1845.14	1	5710.0%	1	R.HNQELHSHLSEEIDR.L
*	TK090902_P14_mitoch_2D_step07.3125.3125.2	1.4287	0.2521	2582.79	1	1960.0%	1	R.KADGPRPSLDYVELSPLAPSSPQR.M
	TK090902_P14_mitoch_2D_step06.3152.3152.1	1.5742	0.1034	1207.17	9	4440.0%	1	R.SSCELEVLLR.V
*	TK090902_P14_mitoch_2D_step11.2338.2338.2	1.3857	0.3097	1537.24	5	3750.0%	1	R.YSQKCLEIGALTR.Q

TBL2_MOUSE

96.0%

13.3%

442

49584

9.0

(Q9R099) Transducin beta-like 2 protein

*	TK090902_P14_mitoch_2D_step03.3993.3993.3	1.3219	0.0591	4550.45	7	1060.0%	1	K.FIMTASSDTTVLIWNLKGQVLSTINTNQMNNSHAVISPCSR.F
*	TK090902_P14_mitoch_2D_step13.2833.2833.2	1.8398	0.2388	2018.91	1	4410.0%	2	K.EKPQQHSFTHPLLAAALK.S

NUFM_HUMAN

95.8%

115

13327

6.0

(Q16718) NADH-ubiquinone oxidoreductase 13 kDa-B subunit (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-13Kd-B) (CI-13Kd-B) (Complex I subunit B13)

*	TK090902_P14_mitoch_2D_step06.2866.2866.2	2.9383	0.0583	1856.39	1	5620.0%	1	K.KTTGLVGLAVCNTPHER.L

Q96CJ9

95.7%

428

48948

8.7

(Q96CJ9) Hypothetical protein

*	TK090902_P14_mitoch_2D_step11.2334.2334.3	1.2076	0.1761	4427.6	26	830.0%	1	K.ERIQLLCNNLNQYSQHISLFGQTLTTCHTQIHCAISK.I
*	TK090902_P14_mitoch_2D_step06.3497.3497.1	1.6403	0.29	1516.77	5	3750.0%	2	K.KHEALFQLVESSK.Q

ANX6_MOUSE

95.6%

672

75755

5.5

(P14824) Annexin VI (Lipocortin VI) (P68) (P70) (Protein III) (Chromobindin 20) (67 kDa calelectrin) (Calphobindin-II) (CPB-II)

	TK090902_P14_mitoch_2D_step04.2039.2039.1	1.4785	0.302	1480.67	3	3640.0%	1	R.AINEAYKEDYHK.S
	TK090902_P14_mitoch_2D_step08.4188.4188.2	1.2669	0.0555	3150.7	6	1610.0%	1	R.GSVHDFPEFDANQDAEALYTAMKGFGSDK.E
*	TK090902_P14_mitoch_2D_step05.2587.2587.1	2.0678	0.2762	1361.78	1	6500.0%	1	K.KTNYDIEHVIK.K
	TK090902_P14_mitoch_2D_step10.2596.2596.2	1.4599	0.0834	1737.67	1	4330.0%	1	R.DLMADLKSEISGDLAR.L

Q9JIG7

95.6%

627

70844

6.0

(Q9JIG7) DXImx40e protein (DNA segment, Chr X, Immunex 40, expressed) (Similar to JM1 protein)

*	TK090902_P14_mitoch_2D_step12.3288.3288.2	1.0986	0.0582	2544.67	2	2500.0%	1	K.FTFHLEPQVQAAQVADVPATSQR.L
*	TK090902_P14_mitoch_2D_step12.2293.2293.2	1.9602	0.263	2072.73	1	3820.0%	2	R.AASLLEHHASQLCQHVNR.D

Q9CR68

95.5%

18.2%

274

29368

8.7

(Q9CR68) 4430402G14Rik protein (RIKEN cDNA 4430402G14 gene)

*	TK090902_P14_mitoch_2D_step05.3707.3707.2	1.3859	0.2781	2519.58	1	2390.0%	1	R.KGPAPLNLEVPAYEFTSDDVVVVG.-
*	TK090902_P14_mitoch_2D_step05.3584.3584.2	1.3919	0.1671	2529.72	5	1800.0%	5	R.GVAGALRPLLQGAVPAASEPPVLDVK.R

Q8R3F2

95.3%

18.2%

466

52537

5.0

(Q8R3F2) Similar to cytoskeleton-associated protein 4 (Fragment)

	TK090902_P14_mitoch_2D_step01.1385.1385.1	2.0308	0.265	989.1	1	6250.0%	1	R.LALQALTEK.L
*	TK090902_P14_mitoch_2D_step11.3258.3258.3	1.3802	0.142	4607.38	30	790.0%	1	K.ELKQSLGELPGTVESLQEQVLSLLSQDQAQAEGLPPQDFLDR.L
*	TK090902_P14_mitoch_2D_step01.2329.2329.1	1.3234	0.2233	1463.97	1	5000.0%	1	R.SLGETQLALSSDLK.E
*	TK090902_P14_mitoch_2D_step04.1699.1699.2	0.9595	0.0881	2266.47	12	1840.0%	1	R.LTELTKSINDNIAIFTDVQK.R

AF32_HUMAN

95.2%

13.3%

797

88484

8.7

(Q9Y4W6) AFG3-like protein 2 (EC 3.4.24.-) (Paraplegin-like protein)

*	TK090902_P14_mitoch_2D_step04.4161.4161.2	0.6693	0.0966	2345.21	25	1050.0%	1	K.DVAGCEEAKLEIMEFVNFLK.N
*	TK090902_P14_mitoch_2D_step12.3105.3105.2	1.1968	0.0423	1964.84	8	2500.0%	1	R.MCMTLGGRASEEIFFGR.I
*	TK090902_P14_mitoch_2D_step08.3619.3619.2	2.3078	0.4064	2650.91	1	3910.0%	1	K.TVAYHEAGHAVAGWYLEHADPLLK.V
*	TK090902_P14_mitoch_2D_step11.3069.3069.2	1.3415	0.1653	1845.89	1	4000.0%	1	R.NLETLQQELGIEGENR.V
*	TK090902_P14_mitoch_2D_step10.4980.4980.2	0.8057	0.0094	2958.24	84	1430.0%	1	K.ATAGEANVPFITVSGSEFLEMFVGVGPAR.V

Q91YK9

95.2%

19.3%

161

18763

5.7

(Q91YK9) RIKEN cDNA 0610009D10 gene

	TK090902_P14_mitoch_2D_step01.0281.0281.1	1.5819	0.3007	1504.91	1	4620.0%	2	R.ANVAKPGLVDDFEK.K
	TK090902_P14_mitoch_2D_step09.3295.3295.3	1.6364	0.128	3468.18	1	1580.0%	1	R.LASLSEKPPAIDWAYYRANVAKPGLVDDFEK.K

BCAM_MOUSE

95.1%

275

30793

8.4

(O35855) Branched-chain amino acid aminotransferase, mitochondrial precursor (EC 2.6.1.42) (BCAT(m)) (Fragment)

	TK090902_P14_mitoch_2D_step14.2855.2855.1	1.3165	0.1763	1259.79	8	3180.0%	5	K.KPAPSQALLFGK.T

Q9Y4F4

95.0%

1696

186845

8.5

(Q9Y4F4) Hypothetical protein KIAA0423 (Fragment)

*	TK090902_P14_mitoch_2D_step04.2695.2695.1	0.976	0.0484	892.96	146	4170.0%	1	K.IFLKLMK.E
*	TK090902_P14_mitoch_2D_step04.2959.2959.2	0.9265	0.2188	2354.69	5	2140.0%	1	R.HTGTEKMASESETPTGAISQYK.E
*	TK090902_P14_mitoch_2D_step07.2689.2689.2	2.4819	0.3988	1982.31	1	4690.0%	1	K.VNLVALETMHKMIPLLR.D
*	TK090902_P14_mitoch_2D_step01.2213.2213.1	0.9694	0.0643	1468.19	73	2730.0%	1	R.LGQDRFQSYISR.L
*	TK090902_P14_mitoch_2D_step06.1788.1788.3	1.1835	0.0367	1652.85	1	3040.0%	1	R.AVVSLINGGQRYYGR.K

EM55_MOUSE

95.0%

466

52227

7.2

(P70290) 55 kDa erythrocyte membrane protein (P55) (Palmytoylated protein P55)

	TK090902_P14_mitoch_2D_step08.2175.2175.1	1.857	0.2368	1139.1	1	5620.0%	2	K.FETVHQIHK.Q
*	TK090902_P14_mitoch_2D_step12.1945.1945.2	2.0376	0.339	1576.53	1	4620.0%	1	R.SHIKNGLLSHNPEK.F
	TK090902_P14_mitoch_2D_step13.2025.2025.1	1.0604	0.22	1034.0	13	3120.0%	1	R.ILHGGMIHR.Q

R37A_HUMAN

94.9%

10144

10.4

(P12751) 60S ribosomal protein L37a (P12751) 60S ribosomal protein L37a

	TK090902_P14_mitoch_2D_step08.2111.2111.1	1.7689	0.2796	1054.17	1	6880.0%	2	K.KIEISQHAK.Y
	TK090902_P14_mitoch_2D_step05.2044.2044.1	1.2385	0.0189	701.26	3	5000.0%	3	K.KVGIVGK.Y

COTR_MOUSE

94.9%

418

46880

5.2

(P07759) Contrapsin precursor

	TK090902_P14_mitoch_2D_step06.4912.4912.2	0.9043	0.1006	3090.96	2	1670.0%	1	R.DEELSCSVLELKYTGNASALLILPDQGR.M
	TK090902_P14_mitoch_2D_step10.2365.2365.1	1.0773	0.1402	1126.53	6	3330.0%	3	K.KLSVSQVVHK.A

Q99KK9

94.9%

505

56985

8.3

(Q99KK9) Hypothetical 57.0 kDa protein

*	TK090902_P14_mitoch_2D_step07.1597.1597.2	0.5409	0.0887	1429.31	59	1820.0%	1	R.DLSPQQMVVREK.I
*	TK090902_P14_mitoch_2D_step08.2546.2546.1	1.8818	0.2765	1327.11	2	5000.0%	2	K.SHQEKPNFVIK.V
*	TK090902_P14_mitoch_2D_step01.4506.4506.1	1.1084	0.046	988.84	10	3750.0%	1	K.AVLTSEQLK.S

Q99LJ3

94.9%

400

45918

5.0

(Q99LJ3) Hypothetical 45.9 kDa protein (Fragment)

	TK090902_P14_mitoch_2D_step03.3069.3069.2	1.1066	0.0023	2292.54	1	2890.0%	1	R.ASFNHFDRDHSGTLGPEEFK.A
	TK090902_P14_mitoch_2D_step03.3318.3318.2	2.0023	0.4423	1982.43	1	3440.0%	1	R.ISIEMHGTLEDQLSHLR.Q
*	TK090902_P14_mitoch_2D_step08.2284.2284.1	1.8739	0.2467	1316.98	1	5000.0%	4	K.HTNYNMEHIR.V

Q8R3Q6

94.9%

144

16665

8.2

(Q8R3Q6) Similar to CG15881 gene product (H. sapiens)

*	TK090902_P14_mitoch_2D_step13.1685.1685.1	1.7125	0.2755	853.46	1	6670.0%	1	R.VHFKPPK.N
*	TK090902_P14_mitoch_2D_step05.2299.2299.1	1.4441	0.0484	1004.86	36	5000.0%	1	K.VMRTIDDR.I

PGBM_MOUSE

94.9%

3707

398295

6.3

(Q05793) Basement membrane-specific heparan sulfate proteoglycan core protein precursor (HSPG) (Perlecan) (PLC)

*	TK090902_P14_mitoch_2D_step09.4013.4013.2	0.9011	0.0314	2888.98	25	1150.0%	2	R.LLAVTHGLRAYDGLSLPEDTETVTASR.Y
*	TK090902_P14_mitoch_2D_step14.3889.3889.2	1.1165	0.0272	2851.06	27	1460.0%	1	R.GPSCQDCDTGYTRVPSGLYLGTCER.C
*	TK090902_P14_mitoch_2D_step11.2989.2989.2	2.1343	0.3557	2770.55	1	2710.0%	3	R.VAEGQTLDLNCVVPGHAHAQVTWHK.R
*	TK090902_P14_mitoch_2D_step07.4097.4097.2	1.2232	0.011	2779.82	4	2080.0%	1	R.SPTNLANRQPDFISFGLVGGRPEFR.F
*	TK090902_P14_mitoch_2D_step13.1422.1422.1	1.2348	0.2411	1417.12	1	4580.0%	1	R.GHTPTHPGTLNQR.Q
	TK090902_P14_mitoch_2D_step08.3143.3143.2	1.2501	0.0502	2748.84	24	1740.0%	1	R.HQGSELHFPSVQPSDAGVYICTCR.N
*	TK090902_P14_mitoch_2D_step09.2715.2715.2	1.1156	0.0677	2302.94	96	1940.0%	1	R.QVQLSEEHWVHESGRPVQR.A
*	TK090902_P14_mitoch_2D_step13.2436.2436.1	0.8681	0.2486	1297.93	7	3500.0%	1	R.LNWGHIPAHPR.V
	TK090902_P14_mitoch_2D_step13.1762.1762.1	1.2861	0.2856	1050.12	14	5000.0%	1	R.HQTHGSLLR.L
*	TK090902_P14_mitoch_2D_step10.2445.2445.2	1.2335	0.0282	1762.15	1	3210.0%	1	R.LHHMSVADSGEYVCR.A
*	TK090902_P14_mitoch_2D_step13.1317.1317.1	1.4669	0.2808	1471.96	1	3460.0%	1	R.GGSLPTHHQTHGSR.L

Q9CRB9

94.8%

227

26335

8.4

(Q9CRB9) 0610041L09Rik protein (RIKEN cDNA 0610041L09 gene)

*	TK090902_P14_mitoch_2D_step06.2469.2469.2	2.5126	0.3927	1782.54	1	5770.0%	2	K.RYEYHPVCADLQTK.I

R22A_MOUSE

94.8%

42.9%

5666

5.1

(P35285) Ras-related protein Rab-22A (RAB-14) (Fragment)

	TK090902_P14_mitoch_2D_step07.2928.2928.2	2.2574	0.308	2333.62	1	3500.0%	7	R.FVEDSFDPNINPTIGASFMTK.T

O43163

94.8%

689

78728

5.4

(O43163) Hypothetical protein KIAA0436 (Fragment)

*	TK090902_P14_mitoch_2D_step12.3787.3787.3	3.1408	0.1761	3050.98	1	2130.0%	1	K.DTGEGYQTPNIILDIQPGGNHVIEDSHK.K
*	TK090902_P14_mitoch_2D_step12.4917.4917.3	1.7755	0.1879	4518.69	6	1150.0%	1	R.AVTLEAPFLDVLNTMMDTTLPLTLEELEEWGNPSSDEKHK.N

Q9D891

94.8%

450

50296

9.1

(Q9D891) 0610039J17Rik protein

	TK090902_P14_mitoch_2D_step05.2436.2436.1	0.9142	0.0321	1221.12	15	3890.0%	1	K.HNLIEVRPDK.Q
	TK090902_P14_mitoch_2D_step12.3211.3211.3	1.2322	0.0474	4112.15	10	1150.0%	1	R.LGTQQAGPLQLHTGACCTAKNHYEVLVLGGGAGGITMATR.M
	TK090902_P14_mitoch_2D_step05.3119.3119.2	2.416	0.4034	2013.04	1	4710.0%	2	K.KYPNVFGIGDCTNLPTSK.T

FLIH_HUMAN

94.5%

1269

144751

6.1

(Q13045) Flightless-I protein homolog

*	TK090902_P14_mitoch_2D_step15.1555.1555.1	0.6446	0.3942	1478.64	6	910.0%	1	K.HVPEDFWPPQPK.L
*	TK090902_P14_mitoch_2D_step04.3774.3774.3	1.2773	0.2923	4625.52	12	940.0%	1	K.ADLTALFLPRQPPMSLAEAEQLMEEWNEDLDGMEGFVLEGK.K
*	TK090902_P14_mitoch_2D_step05.4561.4561.3	1.0122	0.1539	4595.56	12	830.0%	1	R.LNLSSNQITELSLCIDQWVHVETLNLSRNQLTSLPSAICK.L
*	TK090902_P14_mitoch_2D_step12.3912.3912.2	2.5961	0.3665	3066.85	2	2400.0%	2	K.LTNLEEFMAANNNLELVPESLCRCPK.L

PTN6_MOUSE

94.4%

595

67559

7.8

(P29351) Protein-tyrosine phosphatase, non-receptor type 6 (EC 3.1.3.48) (Protein-tyrosine phosphatase 1C) (PTP-1C) (Hematopoietic cell protein-tyrosine phosphatase) (70Z-SHP) (SH-PTP1)

*	TK090902_P14_mitoch_2D_step06.2714.2714.1	1.0566	0.1171	1089.51	18	3120.0%	1	K.KLEIIQSQK.G
*	TK090902_P14_mitoch_2D_step11.2943.2943.2	2.4826	0.3871	1984.87	1	5000.0%	1	R.WYHGHISGGQAESLLQAK.G

CYB_MOUSE

94.4%

19.2%

381

43210

8.0

(P00158) Cytochrome B

*	TK090902_P14_mitoch_2D_step03.4447.4447.3	0.8869	0.1088	4412.19	26	580.0%	1	R.FFAFHFILPFIIAALAIVHLLFLHETGSNNPTGLNSDADK.I
*	TK090902_P14_mitoch_2D_step04.3725.3725.3	1.1703	0.0463	2821.39	65	1700.0%	1	K.LGGVLALILSILILALMPFLHTSKQR.S
*	TK090902_P14_mitoch_2D_step13.1940.1940.1	1.6197	0.2854	870.99	2	5830.0%	1	R.KTHPLFK.I

LMA5_MOUSE

94.4%

7.8%

3718

404013

6.7

(Q61001) Laminin alpha-5 chain precursor

*	TK090902_P14_mitoch_2D_step13.3365.3365.3	2.1475	0.2947	2820.22	1	2100.0%	1	R.LLLGGLPVSGTFHNFSGCISNVFVQR.L
*	TK090902_P14_mitoch_2D_step03.3409.3409.3	1.5878	0.0804	3433.53	29	1470.0%	1	R.NASQNQDNVYQGGGVCLDCQHHTTGINCER.C
*	TK090902_P14_mitoch_2D_step13.1540.1540.2	2.2919	0.3725	2234.31	1	3950.0%	1	R.GHCDPHTGHCTCPPGLSGER.C
*	TK090902_P14_mitoch_2D_step06.3624.3624.3	1.2471	0.0388	3225.91	28	1030.0%	1	R.IVPLENGEIVVSLVNGRPGALNFSYSPLLR.D
*	TK090902_P14_mitoch_2D_step02.3848.3848.1	0.9636	0.0658	1459.8	7	2500.0%	1	R.LEVDTQSNHTTGR.L
*	TK090902_P14_mitoch_2D_step05.4824.4824.2	0.9751	0.0127	3133.14	81	1070.0%	1	K.NQLAAQIQEAQAMLAMDTSETSEKIAHAK.A
*	TK090902_P14_mitoch_2D_step10.4080.4080.3	1.8319	0.2627	4261.34	1	1710.0%	2	R.NAATSLSLFYNNGALPCGCHEVGAVSPTCEPFGGQCPCR.G
*	TK090902_P14_mitoch_2D_step13.4340.4340.3	1.2729	0.0661	4029.0	6	1400.0%	1	R.VFADGAPHYVAFYSNVTGVWLYVDDQLQLVKSHER.T
*	TK090902_P14_mitoch_2D_step14.2582.2582.2	2.7991	0.2802	1280.06	1	7000.0%	1	R.FPKPPQPIILK.D
*	TK090902_P14_mitoch_2D_step11.2634.2634.1	0.9058	0.0365	1433.91	7	2500.0%	1	K.DHYLPDLHHMR.L
	TK090902_P14_mitoch_2D_step10.1723.1723.1	0.7206	0.0051	691.06	22	3750.0%	1	R.DCLER.F
*	TK090902_P14_mitoch_2D_step11.2534.2534.3	0.9147	0.0341	4481.25	10	810.0%	1	R.CRPGFVSSDPSNPASPCVSCPCPLAVPSNNFADGCVLRNGR.T

GELS_MOUSE

94.0%

730

80746

5.8

(P13020) Gelsolin (Actin-depolymerizing factor) (ADF) (Brevin)

	TK090902_P14_mitoch_2D_step04.2253.2253.1	1.2024	0.1092	1276.04	7	4000.0%	2	K.HVVPNEVVVQR.L
	TK090902_P14_mitoch_2D_step03.2535.2535.1	1.307	0.0023	806.21	32	5000.0%	1	K.EDAANRK.L
	TK090902_P14_mitoch_2D_step03.2343.2343.1	0.8719	0.0040	1349.63	131	1500.0%	1	R.YIETDPANRDR.R
*	TK090902_P14_mitoch_2D_step15.3970.3970.3	1.3587	0.1494	4401.53	12	1150.0%	1	R.ATEVPVSWDSFNNGDCFILDLGNNIYQWCGSGSNKFER.L

Q9D8B4

94.0%

143

15185

8.4

(Q9D8B4) 2010012C24Rik protein

*	TK090902_P14_mitoch_2D_step10.2707.2707.2	2.4008	0.3925	2167.35	1	4690.0%	1	K.RFFESYHEVPDGTQCHR.K

KCRM_MOUSE

94.0%

381

43045

7.1

(P07310) Creatine kinase, M chain (EC 2.7.3.2) (M-CK)

	TK090902_P14_mitoch_2D_step11.2067.2067.2	2.2625	0.1911	1349.82	1	7000.0%	1	K.HKTDLNHENLK.G
	TK090902_P14_mitoch_2D_step02.3253.3253.1	0.7928	0.1032	1529.66	11	2920.0%	1	K.GYTLPPHCSRGER.R

SPCB_HUMAN

93.9%

2.3%

2137

246320

5.2

(P11277) Spectrin beta chain, erythrocyte (Beta-I spectrin)

*	TK090902_P14_mitoch_2D_step06.2202.2202.1	0.7291	0.2837	1528.94	31	2270.0%	1	R.EVKQYQDHLNTR.W
*	TK090902_P14_mitoch_2D_step06.2690.2690.1	1.5813	0.29	1438.15	2	3640.0%	2	R.HNLEHAFNVAER.Q
	TK090902_P14_mitoch_2D_step02.3533.3533.2	0.8536	0.1395	2729.65	31	1460.0%	1	K.AEAIQNKEQEVSAAWQALLDACAGR.R

TEMT_MOUSE

93.8%

264

29460

6.4

(P40936) Thioether S-methyltransferase (EC 2.1.1.96) (TEMT)

*	TK090902_P14_mitoch_2D_step15.3342.3342.2	2.3677	0.3933	1860.14	1	4410.0%	1	R.LAGLLKPGGHLVTLVTLR.F

P4H1_MOUSE

93.7%

534

60910

5.9

(Q60715) Prolyl 4-hydroxylase alpha-1 subunit precursor (EC 1.14.11.2) (4-PH alpha-1) (Procollagen-proline,2-oxoglutarate-4-dioxygenase alpha-1 subunit)

*	TK090902_P14_mitoch_2D_step03.3346.3346.2	0.7463	0.0125	2559.09	2	1590.0%	1	R.LQDTYNLDTNTISKGNLPGVQHK.S
	TK090902_P14_mitoch_2D_step01.0969.0969.1	0.7983	0.0030	1128.06	24	2140.0%	1	R.QKYEMLCR.G
	TK090902_P14_mitoch_2D_step04.2202.2202.1	1.4144	0.0961	1166.3	1	4500.0%	1	R.HAACPVLVGNK.W
	TK090902_P14_mitoch_2D_step06.2724.2724.1	1.5426	0.3032	1379.99	1	4500.0%	1	K.KLLELDPEHQR.A

GPDM_MOUSE

93.6%

15.4%

727

80900

6.6

(Q64521) Glycerol-3-phosphate dehydrogenase, mitochondrial precursor (EC 1.1.99.5) (GPD-M) (GPDH-M)

	TK090902_P14_mitoch_2D_step07.2481.2481.2	1.0775	0.1306	2439.58	61	1900.0%	1	R.LAFLNVQAAEEALPRIVELMGR.E
*	TK090902_P14_mitoch_2D_step11.3433.3433.3	1.4462	0.0127	4333.48	42	1090.0%	1	K.MDDKNVVPICQPSAGVHIVMPGYYSPENMGLLDPATSDGR.V
*	TK090902_P14_mitoch_2D_step04.4117.4117.2	1.1362	0.1784	2503.98	33	2270.0%	1	R.NHVVDISDSGLITIAGGKWTTYR.S
*	TK090902_P14_mitoch_2D_step08.2071.2071.1	1.8164	0.18	1113.9	3	5560.0%	2	K.FHNLNAGPSR.T
*	TK090902_P14_mitoch_2D_step14.3161.3161.2	1.3522	0.0766	1986.86	10	3750.0%	1	R.LVSEFPYIEAEVKYGIK.E

CYC_MOUSE

93.3%

17.3%

104

11474

9.6

(P00009) Cytochrome c, somatic

	TK090902_P14_mitoch_2D_step06.1968.1968.1	1.5104	0.3132	806.87	1	6670.0%	2	K.KYIPGTK.M
	TK090902_P14_mitoch_2D_step08.3048.3048.1	0.8417	0.3482	1169.37	1	3500.0%	1	K.TGPNLHGLFGR.K

Q922B6

93.2%

594

66487

7.0

(Q922B6) Unknown (Protein for MGC:7807)

	TK090902_P14_mitoch_2D_step01.2517.2517.1	1.735	0.2187	957.69	6	5000.0%	3	K.MNLEAHLK.E

C560_MOUSE

93.0%

169

18382

9.9

(Q9CZB0) Succinate dehydrogenase cytochrome b560 subunit, mitochondrial precursor (Integral membrane protein CII-3) (QPS1) (QPs-1)

*	TK090902_P14_mitoch_2D_step10.2747.2747.2	1.9387	0.299	1830.22	1	4330.0%	6	K.NTSSNRPLSPHLTIYK.W
*	TK090902_P14_mitoch_2D_step13.2373.2373.2	1.4181	0.1179	1957.21	2	3440.0%	1	K.KNTSSNRPLSPHLTIYK.W

Q922D8

93.0%

935

101256

7.1

(Q922D8) Similar to C1-tetrahydrofolate synthase

*	TK090902_P14_mitoch_2D_step11.2713.2713.2	0.9508	0.1347	3097.97	17	1300.0%	1	K.GEWIKPGAVVIDCGINYVPDDTKPNGRK.V
	TK090902_P14_mitoch_2D_step07.2217.2217.1	2.2435	0.1792	1391.79	2	5450.0%	3	K.THLSLSHNPEQK.G
*	TK090902_P14_mitoch_2D_step05.2239.2239.2	0.9185	0.1692	2526.8	5	1820.0%	1	K.THLSLSHNPEQKGVPTGFVLPIR.D

FABI_HUMAN

92.7%

15.3%

131

15076

7.2

(P12104) Fatty acid-binding protein, intestinal (I-FABP) (FABPI)

*	TK090902_P14_mitoch_2D_step07.3988.3988.2	2.4225	0.3774	2315.4	1	3160.0%	1	R.EIIGDELVQTYVYEGVEAKR.I

Q9D051

92.5%

359

38937

6.9

(Q9D051) 2610103L06Rik protein (Pyruvate dehydrogenase (Lipoamide) beta)

	TK090902_P14_mitoch_2D_step04.3767.3767.2	1.2519	0.138	2502.67	1	2500.0%	6	K.TNHLVTVEGGWPQFGVGAEICAR.I
	TK090902_P14_mitoch_2D_step10.2968.2968.3	2.724	0.4049	2903.55	1	2500.0%	2	R.GPNGASAGVAAQHSQCFAAWYGHCPGLK.V

ATPF_MOUSE

92.5%

3.1%

256

28949

9.1

(Q9CQQ7) ATP synthase B chain, mitochondrial precursor (EC 3.6.3.14)

*	TK090902_P14_mitoch_2D_step03.1973.1973.1	1.4892	0.3308	888.91	2	5710.0%	1	K.KAQAQPIM.-

Q9UG16

92.5%

1.1%

1325

152087

5.5

(Q9UG16) Hypothetical protein (Fragment)

*	TK090902_P14_mitoch_2D_step04.2158.2158.2	2.6032	0.3243	1725.08	1	5710.0%	1	R.LIQSHPESAEDLQEK.C

SPCN_MOUSE

92.5%

382

43515

5.3

(P16546) Spectrin alpha chain, brain (Spectrin, non-erythroid alpha chain) (Alpha-II spectrin) (Fodrin alpha chain) (Fragment)

	TK090902_P14_mitoch_2D_step04.2241.2241.1	1.6528	0.0964	1327.86	4	4090.0%	2	R.SQLLGSAHEVQR.F
*	TK090902_P14_mitoch_2D_step04.2158.2158.2	2.6032	0.3243	1725.08	1	5710.0%	1	R.LIQSHPESAEDLKEK.C

Y152_HUMAN

92.5%

4.1%

292

32234

5.4

(Q14165) Hypothetical protein KIAA0152

*	TK090902_P14_mitoch_2D_step12.2389.2389.1	2.1803	0.1902	1364.94	1	5000.0%	4	R.ASDYGMKLPILR.S

CLPP_MOUSE

92.3%

272

29800

7.5

(O88696) Putative ATP-dependent Clp protease proteolytic subunit, mitochondrial precursor (EC 3.4.21.92) (Endopeptidase Clp)

	TK090902_P14_mitoch_2D_step08.2128.2128.1	1.9672	0.2472	1167.74	1	6000.0%	1	R.IMIHQPSGGAR.G

DSC2_MOUSE

92.2%

9.5%

902

99961

5.0

(P55292) Desmocollin 2A/2B precursor (Epithelial type 2 desmocollin)

*	TK090902_P14_mitoch_2D_step10.4031.4031.3	1.5589	0.1399	4557.26	2	1100.0%	2	K.QTVVICKATMSSAEIVAVDLDDPVNGPPFDFSLESSDSEVQR.M
*	TK090902_P14_mitoch_2D_step15.1794.1794.2	1.3201	0.3074	1812.14	10	2330.0%	1	K.VQDMDGQYFGLHTTAK.C
*	TK090902_P14_mitoch_2D_step04.2287.2287.1	2.2235	0.0144	1377.89	6	5500.0%	3	R.ELIDKYQLLIK.V
*	TK090902_P14_mitoch_2D_step09.3435.3435.2	0.8745	0.0411	2154.19	32	2500.0%	1	R.HTYSEWYNFIQPRLGDK.V

RM12_MOUSE

92.2%

201

21708

9.3

(Q9DB15) 60S ribosomal protein L12, mitochondrial precursor (L12mt)

	TK090902_P14_mitoch_2D_step04.2662.2662.1	2.0754	0.2257	1284.94	1	6000.0%	1	K.KLVESLPQEIK.A

SDF2_MOUSE

92.2%

211

23159

7.3

(Q9DCT5) Stromal cell-derived factor 2 precursor (SDF-2)

*	TK090902_P14_mitoch_2D_step06.3029.3029.2	2.1233	0.3992	2460.83	1	3410.0%	1	K.HSSTDVLLSVTGEQYGRPISGQK.E
*	TK090902_P14_mitoch_2D_step05.4181.4181.2	0.8344	0.0104	2733.54	151	1040.0%	1	R.FKHSSTDVLLSVTGEQYGRPISGQK.E

Q9CV71

92.1%

233

27184

9.9

(Q9CV71) Ribosomal protein, mitochondrial, S7 (Fragment)

*	TK090902_P14_mitoch_2D_step07.3064.3064.1	1.3567	0.339	1466.94	1	5000.0%	2	K.LSHELLEAFHNR.G

Q96A90

91.4%

12.0%

217

23573

8.5

(Q96A90) G6b-C protein precursor

*	TK090902_P14_mitoch_2D_step12.3907.3907.3	2.9338	0.3282	3012.38	1	2600.0%	5	R.FDHSLDLLCPPHIAPLVKTEPQRPVK.E

Q60864

91.4%

543

62582

6.8

(Q60864) MSTI1

*	TK090902_P14_mitoch_2D_step06.3630.3630.2	1.3159	0.1347	2042.85	15	2220.0%	1	K.ALSAGNIDDALQCYSEAIK.L
	TK090902_P14_mitoch_2D_step10.2064.2064.1	1.5938	0.2495	1039.09	3	4380.0%	2	K.ELGNDAYKK.K
	TK090902_P14_mitoch_2D_step13.2032.2032.3	2.1587	0.153	2262.61	18	2350.0%	1	K.DCEECIQLEPTFIKGYTR.K

CAO3_MOUSE

91.3%

16.9%

700

78539

7.4

(Q9EPL9) Acyl-coenzyme A oxidase 3, peroxisomal (EC 1.3.3.6) (Pristanoyl-CoA oxidase)

*	TK090902_P14_mitoch_2D_step05.1987.1987.2	2.0162	0.4278	1584.08	1	5380.0%	1	R.LRGDHSDQQAELGR.E
*	TK090902_P14_mitoch_2D_step06.2874.2874.3	1.2982	0.0028	2997.28	40	1400.0%	1	K.AMRTTAHYESDTQEFILHSPDFEAAK.F
*	TK090902_P14_mitoch_2D_step11.4115.4115.2	1.3956	0.0804	2847.13	9	1460.0%	1	K.IYSLEIFGCFALTELSHGSNTKAMR.T
*	TK090902_P14_mitoch_2D_step02.3984.3984.3	1.0605	0.1135	4218.98	8	970.0%	1	K.ILVLINCLGMYDWSLANKCVLHMLVFGTTVFVSGSEK.H
*	TK090902_P14_mitoch_2D_step13.3429.3429.2	1.4129	0.3332	2182.88	3	3060.0%	1	R.GIQECREACGGHGYLAMNR.F

GCAA_MOUSE

91.3%

330

36389

7.4

(P01863) Ig gamma-2A chain C region, A allele

	TK090902_P14_mitoch_2D_step11.2323.2323.2	2.0005	0.4922	2209.34	1	3610.0%	1	R.NSYSCSVVHEGLHNHHTTK.S

Q99LC3

91.2%

355

40603

7.8

(Q99LC3) RIKEN cDNA 2900053E13 gene

*	TK090902_P14_mitoch_2D_step13.4004.4004.2	0.8842	0.2194	3005.99	2	1800.0%	1	K.RLTLPEYLPPHAVIYIDVPVPEVQSR.I
*	TK090902_P14_mitoch_2D_step05.2105.2105.1	1.3802	0.0519	1434.73	1	4500.0%	2	R.KQCVDHYNEIK.R

PHB_MOUSE

91.2%

272

29820

5.8

(P24142) Prohibitin (B-cell receptor associated protein 32) (BAP 32)

	TK090902_P14_mitoch_2D_step06.3673.3673.3	0.9379	0.0364	3427.23	4	1070.0%	1	R.FRGVQDIVVGEGTHFLIPWVQKPIIFDCR.S
	TK090902_P14_mitoch_2D_step09.3131.3131.2	2.0629	0.2575	1398.99	2	5450.0%	7	R.ILFRPVASQLPR.I

LDHA_MOUSE

91.2%

331

36367

7.7

(P06151) L-lactate dehydrogenase A chain (EC 1.1.1.27) (LDH-A) (LDH muscle subunit) (LDH-M)

*	TK090902_P14_mitoch_2D_step13.2214.2214.2	2.2591	0.3827	1184.09	1	7220.0%	1	R.RVHPISTMIK.G

DPY4_HUMAN

91.2%

572

61906

7.2

(O14531) Dihydropyrimidinase related protein-4 (DRP-4) (ULIP4 protein)

*	TK090902_P14_mitoch_2D_step09.3084.3084.2	2.0845	0.3947	2243.03	2	3610.0%	2	R.ERADSAACCDYSLHVDITR.W
*	TK090902_P14_mitoch_2D_step09.3145.3145.1	0.8612	0.1046	913.95	2	2780.0%	1	K.GAADAIAQAK.R

ICAL_MOUSE

91.1%

788

84922

5.5

(P51125) Calpain inhibitor (Calpastatin)

	TK090902_P14_mitoch_2D_step05.3143.3143.2	1.2875	0.1077	1870.43	14	3440.0%	1	K.SLSESELIGELSADFDR.S
	TK090902_P14_mitoch_2D_step13.1698.1698.2	1.4515	0.1162	1536.86	31	2690.0%	1	K.AIPVNKQLEGPDQK.R
	TK090902_P14_mitoch_2D_step08.1748.1748.2	0.8095	0.1523	1926.22	45	1670.0%	1	R.QEKCGEDEDTVPAEYR.L
	TK090902_P14_mitoch_2D_step10.2397.2397.2	2.0786	0.3964	1935.82	1	4060.0%	1	R.HLLDNDGKDKPEKPPTK.K
	TK090902_P14_mitoch_2D_step13.2548.2548.3	0.9795	0.0663	3101.88	19	1080.0%	1	K.LSAAISEVVSQTPAPSTHAAAPLPGTEQKDK.E

RL29_MOUSE

91.1%

159

17456

11.8

(P47915) 60S ribosomal protein L29

*	TK090902_P14_mitoch_2D_step12.1904.1904.1	1.5754	0.0124	1195.65	1	4500.0%	5	K.ALVKPQAIKPK.M

Q8VBV8

91.0%

21.4%

201

23520

5.0

(Q8VBV8) Hypothetical 23.5 kDa protein

*	TK090902_P14_mitoch_2D_step08.2868.2868.2	1.7922	0.1701	2151.12	1	3750.0%	2	K.MLQMDINPGCWITQQRR.R
*	TK090902_P14_mitoch_2D_step09.3025.3025.3	1.7125	0.0213	2904.79	58	1900.0%	1	K.NGDNTIDFLEYVAALNLVLRGSLEHK.L

EFTS_MOUSE

90.6%

324

35334

7.1

(Q9CZR8) Elongation factor Ts, mitochondrial precursor (EF-Ts) (EF-TsMt)

*	TK090902_P14_mitoch_2D_step10.3144.3144.2	2.4361	0.3697	2911.26	1	2960.0%	4	R.RLGQHVVGMAPLSVGSLDDEPGGETETR.M
	TK090902_P14_mitoch_2D_step14.1534.1534.2	1.2573	0.1838	1202.06	48	2780.0%	1	R.KTGYSFVNCK.K

O08999

90.3%

1833

197928

5.3

(O08999) Latent TGF-beta binding protein-2

*	TK090902_P14_mitoch_2D_step04.4895.4895.2	1.0469	0.08	2771.35	5	2270.0%	1	R.DECWCPANSTGKFCHLPVPQPDR.E
*	TK090902_P14_mitoch_2D_step11.2593.2593.2	1.9592	0.3219	1878.99	3	3670.0%	3	K.FCHLPVPQPDREPAGR.G
*	TK090902_P14_mitoch_2D_step14.1996.1996.2	2.4127	0.3637	2046.76	1	4410.0%	1	K.VQIHHPPEASVQIHQVAR.V
*	TK090902_P14_mitoch_2D_step07.4937.4937.1	0.7297	0.087	1483.46	158	1150.0%	1	R.IQPLVPPPSPPPSR.R

G6PI_MOUSE

89.9%

20.8%

557

62637

7.9

(P06745) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) (Neuroleukin) (NLK)

	TK090902_P14_mitoch_2D_step06.3574.3574.3	2.6726	0.472	3319.66	1	2410.0%	1	R.VDHQTGPIVWGEPGTNGQHAFYQLIHQGTK.M
*	TK090902_P14_mitoch_2D_step06.2366.2366.1	0.983	0.0672	1360.8	65	2730.0%	1	K.VDGKDVMPEVNR.V
	TK090902_P14_mitoch_2D_step05.1769.1769.3	1.0621	0.0243	3965.54	71	1020.0%	1	K.NAPVLLALLGIWYINCYGCETHALLPYDQYMHR.F
*	TK090902_P14_mitoch_2D_step03.4904.4904.3	1.0446	0.0525	4726.81	75	620.0%	1	R.YSLWSAIGLSIALHVGFDHFEQLLSGAHWMDQHFLKTPLEK.N

CAD5_MOUSE

89.7%

783

87848

5.2

(P55284) Vascular endothelial-cadherin precursor (VE-cadherin) (Cadherin-5)

*	TK090902_P14_mitoch_2D_step07.2055.2055.1	1.1705	0.0287	974.88	3	5560.0%	1	R.LAPGLHGGPR.E
*	TK090902_P14_mitoch_2D_step08.2114.2114.1	1.3231	0.1243	1156.08	99	3890.0%	3	K.RNEGIIKPTK.S

NR61_MOUSE

89.7%

495

55976

6.2

(Q64249) Orphan nuclear receptor NR6A1 (Germ cell nuclear factor) (GCNF) (Retinoid receptor-related testis specific receptor) (RTR)

	TK090902_P14_mitoch_2D_step06.2688.2688.1	2.1248	0.0997	1587.94	2	4620.0%	1	K.SIGPVQISEEEIER.I
	TK090902_P14_mitoch_2D_step03.3070.3070.2	0.8466	0.0495	2054.4	5	1880.0%	1	R.FPDLMMCLPEIRYIAGK.M

WDRA_HUMAN

89.4%

1242

141969

6.5

(Q9HBG6) WD-repeat protein 10

	TK090902_P14_mitoch_2D_step13.2478.2478.3	1.9177	0.1066	4706.34	2	1250.0%	1	K.ELLFQEPNANSVAWNTQCEDMLCFSGGGYLNIKASTFPVHR.Q
	TK090902_P14_mitoch_2D_step09.2392.2392.3	1.638	0.0034	3219.77	9	1730.0%	1	R.HTEDPFSVHRPETLFNISRFLLHSLPK.D
	TK090902_P14_mitoch_2D_step08.3023.3023.1	1.4718	0.0138	956.06	6	5710.0%	2	R.FLLHSLPK.D
	TK090902_P14_mitoch_2D_step03.3446.3446.2	1.6385	0.0505	1857.84	1	4330.0%	2	K.MGDLKSLVQLHVETQR.W
	TK090902_P14_mitoch_2D_step01.0135.0135.3	1.1066	0.17	2290.1	31	1530.0%	1	K.LFKEAYQIACLGVTDTDWR.E

ADDB_MOUSE

89.2%

725

80642

6.2

(Q9QYB8) Beta adducin (Erythrocyte adducin beta subunit) (Add97)

	TK090902_P14_mitoch_2D_step06.2364.2364.1	0.7811	0.0688	1434.67	34	1820.0%	1	K.RVTMILQSPSFR.E
	TK090902_P14_mitoch_2D_step12.2488.2488.1	1.7617	0.2229	1575.95	1	4170.0%	3	K.SRLGEHEFEALMR.M
	TK090902_P14_mitoch_2D_step15.2546.2546.2	1.3468	0.2801	2337.35	1	3000.0%	1	K.HRPHEVGSVQWAGSTFGPMQK.S
	TK090902_P14_mitoch_2D_step09.3235.3235.3	1.4611	0.0469	2549.34	6	1930.0%	2	-.MSEDTVPEAASPPPSQGQHYFDR.F
	TK090902_P14_mitoch_2D_step12.2500.2500.2	2.1402	0.1552	1781.28	4	3440.0%	1	R.CAIHLHTPATAAVSAMK.C

STB2_MOUSE

89.0%

1.5%

593

66358

6.7

(Q64324) Syntaxin binding protein 2 (UNC-18 homolog 2) (UNC-18B) (MUSEC1)

	TK090902_P14_mitoch_2D_step10.2297.2297.1	1.6841	0.2319	1037.77	1	6880.0%	1	R.HMHIADVSK.K

G3B2_MOUSE

89.0%

482

54088

5.6

(P97379) Ras-GTPase-activating protein binding protein 2 (GAP SH3-domain binding protein 2) (G3BP-2)

	TK090902_P14_mitoch_2D_step07.2317.2317.2	1.9724	0.5364	2995.75	1	2780.0%	1	R.NSSYVHGGVDASGKPQEAVYGQNDIHHK.V
	TK090902_P14_mitoch_2D_step03.1664.1664.1	0.2358	0.014	557.92	9	1670.0%	1	R.RIIR.Y

Q9CV33

89.0%

278

29314

5.6

(Q9CV33) 2310047B19Rik protein (Fragment)

*	TK090902_P14_mitoch_2D_step04.1546.1546.2	1.9608	0.5546	2612.59	1	2500.0%	1	R.VLNAGCAARPGEDGAAGPPLLLLGAPR.S

Q9DBV4

89.0%

442

49750

7.1

(Q9DBV4) 1200013A08Rik protein

*	TK090902_P14_mitoch_2D_step13.2286.2286.2	1.9904	0.5161	2494.49	1	3420.0%	1	R.ADEGIYSCHLHHHYCGLHER.R
	TK090902_P14_mitoch_2D_step01.0153.0153.1	0.9197	0.0283	935.18	2	5000.0%	1	R.MVWTQDR.L
*	TK090902_P14_mitoch_2D_step11.2965.2965.2	1.6308	0.3148	2885.1	1	2170.0%	1	R.GDEGVYTCNLHHHYCHLDESLAVR.L

Q99JY0

88.9%

23.4%

475

51386

9.4

(Q99JY0) Similar to hydroxyacyl-coenzyme A dehydrogenase/3-ketoacyl-coenzyme A thiolase/enoyl-coenzyme A hydratase (Trifunctional protein), beta subunit

*	TK090902_P14_mitoch_2D_step06.1993.1993.1	1.3621	0.1493	902.95	18	5000.0%	1	K.TLAKPNMK.N
	TK090902_P14_mitoch_2D_step04.3105.3105.2	2.1209	0.3725	1685.52	1	5000.0%	1	K.KAQDEGHLSDIVPFK.V
*	TK090902_P14_mitoch_2D_step10.3664.3664.3	1.3358	0.1246	3606.14	4	1670.0%	1	K.LKPAFIKPYGTVTAANSSFLTDGASAMLIMSEDR.A
	TK090902_P14_mitoch_2D_step08.3994.3994.2	0.866	0.0358	2888.41	23	1200.0%	1	K.AGLTMNDIDAFEFHEAFSGQILANFK.A
	TK090902_P14_mitoch_2D_step07.2253.2253.2	1.317	0.0611	1779.82	18	3210.0%	1	R.MEQDEYALRSHSLAK.K
	TK090902_P14_mitoch_2D_step01.1786.1786.1	1.7479	0.2197	1419.03	1	5000.0%	3	K.DQLLLGPTYATPK.V

Q9DBQ3

88.9%

691

77588

7.2

(Q9DBQ3) 1200016O07Rik protein

*	TK090902_P14_mitoch_2D_step13.3280.3280.2	2.3714	0.349	2532.72	1	3040.0%	1	K.STKPSLSPGKPQSSLVIPASLFCK.T
*	TK090902_P14_mitoch_2D_step13.0698.0698.2	0.5604	0.0075	1297.34	13	1820.0%	1	K.RTTALLLPGIIK.A

CAV2_MOUSE

88.7%

28.4%

162

18227

5.6

(Q9WVC3) Caveolin-2

*	TK090902_P14_mitoch_2D_step09.2340.2340.2	2.0453	0.3859	2151.12	1	4710.0%	2	K.YVDSSHDRDPHQLNSHLK.L
*	TK090902_P14_mitoch_2D_step12.4908.4908.2	0.9116	0.3414	2967.36	3	930.0%	1	K.SVTDVVIGPLCTSVGRSFSSVSMQLSHD.-

Q9H0R6

88.6%

528

57469

5.8

(Q9H0R6) Hypothetical protein

	TK090902_P14_mitoch_2D_step13.2774.2774.2	1.9464	0.4544	2133.14	1	4210.0%	1	R.NPAAHCGLVGFKPSYGLVSR.H

Q9CZN8

88.6%

525

56783

5.9

(Q9CZN8) 2700038P16Rik protein

*	TK090902_P14_mitoch_2D_step13.2774.2774.2	1.9464	0.4544	2133.14	1	4210.0%	1	R.NPAAHCGIVGFKPSYGLVSR.H

Q9D7N9

88.4%

415

46434

6.3

(Q9D7N9) 2310001A20Rik protein (Integral plasma membrane protein)

*	TK090902_P14_mitoch_2D_step13.2017.2017.2	1.9378	0.168	2035.99	4	3240.0%	2	R.RPLRPQVVTDDGQVPEVK.E
*	TK090902_P14_mitoch_2D_step10.3117.3117.3	1.0429	0.1439	3359.67	93	1030.0%	1	K.VLLDQLQFPNGVQLSPEEDFVLVAETTMAR.I

MYH6_MOUSE

88.4%

1938

223563

5.7

(Q02566) Myosin heavy chain, cardiac muscle alpha isoform (MyHC-alpha)

	TK090902_P14_mitoch_2D_step12.2796.2796.2	2.3111	0.3542	1807.48	1	5000.0%	1	R.KAPGVMDNPLVMHQLR.C
	TK090902_P14_mitoch_2D_step05.2664.2664.2	1.8181	0.156	2049.79	13	2630.0%	3	R.ENQSILITGESGAGKTVNTK.R
*	TK090902_P14_mitoch_2D_step15.3086.3086.2	1.009	0.0020	2352.3	35	2050.0%	1	K.SSLKLMATLFSTYASADTGDSGK.G

CO2A_HUMAN

88.3%

7.8%

525

59636

7.9

(Q92828) Coronin 2A (WD-repeat protein 2) (IR10)

	TK090902_P14_mitoch_2D_step13.3122.3122.2	2.2136	0.3638	1750.54	4	3330.0%	2	R.VIDPRAGTVLQEASYK.G
	TK090902_P14_mitoch_2D_step08.2684.2684.3	1.171	0.0143	2968.32	218	1460.0%	1	K.WNPFDDFEIASCSEDATIKIWSIPK.Q

Q9DAM4

87.8%

21.7%

466

52353

8.8

(Q9DAM4) 1700007H16Rik protein

*	TK090902_P14_mitoch_2D_step05.4231.4231.3	1.0471	0.0305	4240.03	1	990.0%	1	R.AALPSHVVTMLDNFPTKLHPMSQLSAAITVLNNESNFAR.A
	TK090902_P14_mitoch_2D_step08.2458.2458.1	1.4451	0.0405	1169.41	5	4500.0%	1	R.VVPGYGHAVLR.K
	TK090902_P14_mitoch_2D_step11.2611.2611.1	1.2652	0.0267	1115.46	8	3750.0%	6	K.HLPKDPMFK.L
*	TK090902_P14_mitoch_2D_step11.3761.3761.2	1.3277	0.0398	2693.22	83	1900.0%	2	K.YWELTYEDCMDLLAKLPCVAAK.I
*	TK090902_P14_mitoch_2D_step11.1819.1819.1	0.9096	0.0499	1078.85	14	3890.0%	1	K.EVGEDASDEK.L
	TK090902_P14_mitoch_2D_step05.2967.2967.1	1.382	0.1735	1128.1	14	5000.0%	1	R.ALGFPLERPK.S

NOC4_MOUSE

87.6%

12.6%

207

23348

6.2

(O70378) Neighbor of COX4

	TK090902_P14_mitoch_2D_step06.4090.4090.2	1.041	0.0206	2900.67	3	1960.0%	1	R.DPHHDYCEDWPEAQRISASLLDSR.S
	TK090902_P14_mitoch_2D_step07.2419.2419.2	2.0081	0.3906	2274.39	1	3440.0%	1	R.CRDPHHDYCEDWPEAQR.I

LCFB_MOUSE

87.4%

699

77923

7.1

(P41216) Long-chain-fatty-acid--CoA ligase 2 (EC 6.2.1.3) (Long-chain acyl-CoA synthetase 2) (LACS 2)

*	TK090902_P14_mitoch_2D_step03.4639.4639.3	0.8336	0.0406	4697.23	12	770.0%	1	R.VKPKPPEPEDLAIICFTSGTTGNPKGAMITHQNIINDCSGFIK.A
*	TK090902_P14_mitoch_2D_step12.3047.3047.2	1.9485	0.4131	2699.95	1	2920.0%	4	R.VKPKPPEPEDLAIICFTSGTTGNPK.G
*	TK090902_P14_mitoch_2D_step01.0694.0694.1	0.8674	0.0212	1185.95	3	3500.0%	1	K.DPARTAEALDK.D
*	TK090902_P14_mitoch_2D_step03.3547.3547.3	1.2224	0.1194	3752.59	51	590.0%	1	R.SEAVAQVFVHGESLQAFLIAVVVPDVESLPSWAQK.R

LYN_MOUSE

87.4%

511

58681

7.2

(P25911) Tyrosine-protein kinase LYN (EC 2.7.1.112)

*	TK090902_P14_mitoch_2D_step13.2898.2898.2	1.9964	0.4184	1803.67	1	4640.0%	1	K.QQRPVPEFHLLPGQR.F
	TK090902_P14_mitoch_2D_step07.4539.4539.2	1.0134	0.1244	3064.32	1	2310.0%	2	K.DPEEQGDIVVALYPYDGIHPDDLSFKK.G
	TK090902_P14_mitoch_2D_step04.2654.2654.3	1.8696	0.1927	3441.63	2	1640.0%	2	R.FQTKDPEEQGDIVVALYPYDGIHPDDLSFK.K
	TK090902_P14_mitoch_2D_step04.2378.2378.1	0.7131	0.0529	1557.73	48	2080.0%	1	K.ACISPKPQKPWDK.D

GTT1_MOUSE

87.4%

239

27245

7.3

(Q64471) Glutathione S-transferase theta 1 (EC 2.5.1.18) (GST class-theta)

*	TK090902_P14_mitoch_2D_step06.2505.2505.1	1.4277	0.3627	1230.97	3	4000.0%	1	R.KGEHLSDAFAR.V

O88306

87.3%

173

18352

6.3

(O88306) DJ-1

	TK090902_P14_mitoch_2D_step05.1883.1883.1	1.4854	0.2941	866.97	1	5710.0%	2	K.VTTHPLAK.D
	TK090902_P14_mitoch_2D_step13.3874.3874.2	1.2401	0.2209	2457.35	1	3260.0%	1	R.KGLIAAICAGPTALLAHEVGFGCK.V

Q8VCI5

87.0%

299

32733

4.3

(Q8VCI5) Peroxisomal farnesylated protein

*	TK090902_P14_mitoch_2D_step07.2145.2145.2	2.3928	0.3206	2088.84	1	4250.0%	1	K.AKPSPEHAPTISAPDASGPQK.R

RTC1_MOUSE

87.0%

366

39226

7.9

(Q9D7H3) RNA 3'-terminal phosphate cyclase (EC 6.5.1.4) (RNA-3'-phosphate cyclase) (RNA cyclase)

*	TK090902_P14_mitoch_2D_step12.2593.2593.2	2.0366	0.3725	1880.38	2	4060.0%	1	R.STPGLRPQHLSGLEMVR.D

DYH9_HUMAN

87.0%

4486

511936

5.9

(Q9NYC9) Ciliary dynein heavy chain (Axonemal dynein heavy chain) (Dynein heavy chain 9)

	TK090902_P14_mitoch_2D_step10.4017.4017.2	0.9517	0.0391	3112.93	9	1670.0%	1	R.EGAYIHGLFMEGACWDTQAGIITEAKLK.D
*	TK090902_P14_mitoch_2D_step15.3175.3175.2	0.7981	0.0429	2303.89	161	1590.0%	1	K.SFGSPPLAVSNVSAAVMVLMAPR.G
	TK090902_P14_mitoch_2D_step05.3269.3269.2	1.1143	0.1389	2487.83	11	2250.0%	1	K.GHWVILQNIHLVAKWLSTLEK.K
*	TK090902_P14_mitoch_2D_step07.4145.4145.3	1.1985	0.2683	4489.4	3	1100.0%	1	R.VTQIGQKGYLQIIEQALEAGAVVLIENLEESIDPVLGPLLGR.E
*	TK090902_P14_mitoch_2D_step06.4244.4244.2	0.8941	0.1792	2559.28	34	1670.0%	1	R.ESSQPLLQGENPTPKVELEFWK.S
	TK090902_P14_mitoch_2D_step11.3746.3746.3	1.2126	0.0929	3651.0	1	1690.0%	1	R.SYPFNTGDLTISVNVLYNFLEANAKVPYDDLR.Y
*	TK090902_P14_mitoch_2D_step13.3340.3340.2	1.3488	0.085	2618.25	11	1900.0%	1	K.ELWDTIGMVTSSIHAWETTPWR.N
*	TK090902_P14_mitoch_2D_step09.4608.4608.3	0.8852	0.0112	4217.15	59	590.0%	1	R.HLEALENAEFPEVKPQLRPLLHVVCLIWATCKSYR.S
*	TK090902_P14_mitoch_2D_step15.2768.2768.3	0.8907	0.1137	3081.99	27	1200.0%	1	K.AVTNDELFGIINPATGEWKDGLFSSIMR.E
	TK090902_P14_mitoch_2D_step07.1768.1768.1	0.7607	0.0449	803.07	66	3330.0%	1	R.ELELGLK.G
*	TK090902_P14_mitoch_2D_step07.4116.4116.2	1.022	0.0278	1992.26	6	1560.0%	1	K.KLSTVDAVISIWFEVQR.T
	TK090902_P14_mitoch_2D_step09.2920.2920.3	2.7712	0.3299	3310.07	2	1900.0%	1	R.SPPREGAYIHGLFMEGACWDTQAGIITEAK.L
*	TK090902_P14_mitoch_2D_step01.1935.1935.1	1.401	0.0168	788.16	17	5000.0%	1	R.LENGLLK.L

APP2_MOUSE

86.9%

695

78945

4.7

(Q06335) Amyloid-like protein 2 precursor (CDEI-box binding protein) (CDEBP)

	TK090902_P14_mitoch_2D_step07.2469.2469.1	1.5218	0.2885	1435.9	1	5000.0%	1	R.HYQHVLAVDPEK.A
	TK090902_P14_mitoch_2D_step12.3283.3283.2	1.1027	0.1933	2162.5	17	1670.0%	1	R.IALENYLAALQSDPPRPHR.I

PLK1_MOUSE

86.9%

603

68301

8.7

(Q07832) Serine/threonine-protein kinase PLK (EC 2.7.1.-) (PLK-1) (Serine-threonine protein kinase 13) (STPK13)

	TK090902_P14_mitoch_2D_step01.1950.1950.1	2.0572	0.1835	997.16	3	6430.0%	1	R.RSLLELHK.R

Q8WV99

86.6%

257

28023

6.9

(Q8WV99) Similar to RIKEN cDNA 1110060O18 gene

*	TK090902_P14_mitoch_2D_step12.2045.2045.2	2.1065	0.3685	1804.19	1	4000.0%	1	R.HPLDHDCSGEGHPTSR.A

UCR6_MOUSE

86.6%

110

13396

9.1

(Q9D855) Ubiquinol-cytochrome C reductase complex 14 kDa protein (EC 1.10.2.2) (Complex III subunit VI)

	TK090902_P14_mitoch_2D_step01.1321.1321.1	0.58	0.0398	977.18	134	2860.0%	1	K.RALDLTMR.H
	TK090902_P14_mitoch_2D_step04.2157.2157.1	1.5148	0.2277	736.54	2	8000.0%	6	R.HQILPK.D

NLD2_MOUSE

86.5%

257

29081

9.2

(Q9CZR2) N-acetylated-alpha-linked acidic dipeptidase II (EC 3.4.17.21) (NAALADase II) (Fragment)

*	TK090902_P14_mitoch_2D_step08.1710.1710.3	1.0987	0.0822	1719.67	7	2120.0%	1	K.FYRHIIFAPSSHNK.Y
	TK090902_P14_mitoch_2D_step12.2276.2276.1	1.4716	0.2958	1251.08	2	4500.0%	1	R.HIIFAPSSHNK.Y

Q9BUP1

86.5%

401

46087

8.4

(Q9BUP1) Similar to actin binding LIM protein 1

*	TK090902_P14_mitoch_2D_step14.2177.2177.2	2.2424	0.344	1966.29	1	5000.0%	1	R.SPQHFHRPDQGINIYR.K

Q9CXS4

86.3%

252

27482

9.7

(Q9CXS4) 3110013H01Rik protein

*	TK090902_P14_mitoch_2D_step02.2571.2571.3	1.6873	0.0378	3179.41	5	1610.0%	1	R.CGVQSFYTPRSNPGGFGIAPHCLDEGTVR.S
*	TK090902_P14_mitoch_2D_step13.1276.1276.1	1.5669	0.2249	1124.04	3	5710.0%	2	R.ERWETFQK.R

TSC2_MOUSE

86.2%

1814

202070

7.0

(Q61037) Tuberin (Tuberous sclerosis 2 homolog protein)

*	TK090902_P14_mitoch_2D_step05.1764.1764.3	0.9164	0.0586	2627.53	8	1150.0%	1	K.EHGHAPVQVIVSATGCTAKPPTLPR.S
	TK090902_P14_mitoch_2D_step06.2201.2201.1	1.5363	0.2391	1157.08	5	5000.0%	1	R.YTEFLTGLGR.L
*	TK090902_P14_mitoch_2D_step09.2801.2801.2	0.8269	0.0119	3178.54	2	1800.0%	1	K.QGQFNFVHVIITPLDYKCNLLTLQCR.K
*	TK090902_P14_mitoch_2D_step12.3156.3156.3	1.8328	0.0597	2557.02	4	1930.0%	1	K.AVSDLLQPERPPEARHAVLTLLK.A
*	TK090902_P14_mitoch_2D_step07.3412.3412.3	1.4434	0.1187	4201.55	5	1290.0%	1	K.VLDVLSFVLLIIRQFYEEELINSVVISQLSHIPEDK.D
*	TK090902_P14_mitoch_2D_step04.4517.4517.3	1.1336	0.1062	4597.69	19	910.0%	1	R.IQTSLTSASLGSADENSMAQADDNLKNLHLELTETCLDMMAR.Y
	TK090902_P14_mitoch_2D_step13.2656.2656.3	1.8444	0.1332	1992.75	1	3330.0%	1	K.DYPSNEDLHERLEVFK.A

Q91VJ3

85.7%

361

40149

6.2

(Q91VJ3) Similar to Adenosin kinase

	TK090902_P14_mitoch_2D_step06.3146.3146.1	1.503	0.2657	1258.09	1	5560.0%	1	K.HKELFDELVK.K

Q14700

85.3%

905

101951

7.5

(Q14700) Hypothetical protein KIAA0090 (Fragment)

*	TK090902_P14_mitoch_2D_step13.1738.1738.3	0.8208	0.0655	2881.32	63	1500.0%	1	K.ESGMSSLYVFNPIFGKWSQVAPPVLK.R
	TK090902_P14_mitoch_2D_step14.2494.2494.2	1.4357	0.1411	1849.78	3	3330.0%	2	R.TTAHFPHPPQCTLLVK.D

Q9UNU1

85.2%

650

70344

7.8

(Q9UNU1) Nucleobase transporter-like 1 protein

	TK090902_P14_mitoch_2D_step04.2463.2463.2	2.5112	0.2179	1618.04	1	4670.0%	2	K.NTTSKSMEAGSSTEGK.Y

GEFH_HUMAN

84.9%

893

101174

8.4

(Q92974) GEF-H1 protein (Proliferating cell nucleolar antigen P40)

	TK090902_P14_mitoch_2D_step13.1562.1562.1	0.8244	0.0477	740.95	5	3000.0%	1	R.RPVDPR.R
	TK090902_P14_mitoch_2D_step03.4139.4139.1	0.6837	0.0828	1594.19	20	1790.0%	1	K.DLLVGPGVELLLTPR.E
	TK090902_P14_mitoch_2D_step08.2203.2203.1	0.9851	0.091	911.11	281	2780.0%	1	R.AGAAPVAPEK.Q
	TK090902_P14_mitoch_2D_step10.4199.4199.2	2.0184	0.0559	2254.26	6	3330.0%	2	R.FKDVLVLLMTDVLVFLQEK.D

Q8VF39

84.7%

313

35274

9.2

(Q8VF39) Olfactory receptor MOR245-11

*	TK090902_P14_mitoch_2D_step14.2667.2667.1	1.737	0.2101	1275.11	2	4440.0%	1	R.RLITQLFNLR.K

Q62383

84.5%

3.1%

1726

199054

4.9

(Q62383) Supt6h

	TK090902_P14_mitoch_2D_step05.3261.3261.3	1.2531	0.1549	3264.22	2	1210.0%	1	K.MAVDALEYDESAEDANPAGALEEILENPER.L
	TK090902_P14_mitoch_2D_step06.3025.3025.2	1.7757	0.3517	1780.43	1	3930.0%	3	R.LKDLDLDAFAEELER.Q
	TK090902_P14_mitoch_2D_step11.1883.1883.2	0.8334	0.0731	1090.51	2	5000.0%	1	R.FQLRSIPVK.A

Q8WWL7

83.9%

1395

157975

6.8

(Q8WWL7) Cyclin B3

*	TK090902_P14_mitoch_2D_step08.3731.3731.2	2.2575	0.3312	2488.65	3	2500.0%	1	K.LLALKEELSAEAATNIQTQLSLK.K
*	TK090902_P14_mitoch_2D_step12.3412.3412.2	1.303	0.0162	1556.69	110	3080.0%	1	R.LKPLVLQEITSGEK.S
*	TK090902_P14_mitoch_2D_step09.2389.2389.1	1.0558	0.051	868.28	6	5830.0%	1	K.KPLILKR.K
*	TK090902_P14_mitoch_2D_step09.2345.2345.2	1.1661	0.083	1771.79	26	2670.0%	1	K.SPTEESPFDEALAFTK.K
*	TK090902_P14_mitoch_2D_step08.2283.2283.1	1.3094	0.0274	713.05	30	6000.0%	2	K.KPLILK.R

B3G3_MOUSE

83.8%

27.2%

335

37067

8.8

(P58158) Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 (EC 2.4.1.135) (Beta-1,3-glucuronyltransferase 3) (Glucuronosyltransferase-I) (GlcAT-I) (UDP-GlcUA:Gal Beta-1,3-Gal-R glucuronyltransferase) (GlcUAT-I)

*	TK090902_P14_mitoch_2D_step13.4989.4989.3	1.1025	0.1151	4552.22	2	1280.0%	1	R.VVGFHTAWEPNRPFPLDMAGFAVALPLLLAKPNAQFDATAPR.G
*	TK090902_P14_mitoch_2D_step15.3058.3058.2	2.2519	0.3295	2973.08	1	2880.0%	1	R.RPPPVPAQPPEPEALPTIYVITPTYAR.L
	TK090902_P14_mitoch_2D_step15.1738.1738.2	0.6012	0.0795	2412.33	64	1190.0%	1	K.DPPPPGTQGVVYFADDDNTYSR.E

Q9D7P6

83.8%

168

18098

9.3

(Q9D7P6) 2310020H20Rik protein

	TK090902_P14_mitoch_2D_step05.2012.2012.1	1.6929	0.208	1258.89	1	5560.0%	4	K.KVVDHYENPR.N
	TK090902_P14_mitoch_2D_step07.2567.2567.2	1.1519	0.051	1970.78	29	2500.0%	1	K.TFGCGSAIASSSLATEWVK.G
	TK090902_P14_mitoch_2D_step15.2375.2375.2	0.9608	0.1379	2246.26	47	1750.0%	1	R.FKTFGCGSAIASSSLATEWVK.G

EHD1_MOUSE

83.7%

534

60603

6.8

(Q9WVK4) EH-domain containing protein 1 (mPAST1)

	TK090902_P14_mitoch_2D_step07.2244.2244.2	0.9912	0.1018	2917.67	30	1540.0%	1	R.FMCAQLPNPVLDSISIIDTPGILSGEK.Q
*	TK090902_P14_mitoch_2D_step02.3575.3575.1	0.7972	0.1593	1475.16	28	2500.0%	1	R.EHQISSGDFPSLR.K
	TK090902_P14_mitoch_2D_step06.2162.2162.1	1.2228	0.0437	831.52	1	5830.0%	1	K.FQALKPK.L
	TK090902_P14_mitoch_2D_step11.2073.2073.1	0.684	0.038	576.29	6	5000.0%	2	R.RPFR.K
*	TK090902_P14_mitoch_2D_step13.3060.3060.2	1.943	0.3823	2291.33	2	2500.0%	3	K.VKLEGHELPADLPPHLIPPSK.R

RL19_HUMAN

83.7%

8.2%

196

23466

11.5

(P14118) 60S ribosomal protein L19 (P14118) 60S ribosomal protein L19

	TK090902_P14_mitoch_2D_step08.2508.2508.1	1.2704	0.0734	1022.8	5	5000.0%	2	R.ILMEHIHK.L
	TK090902_P14_mitoch_2D_step06.1972.1972.1	1.3717	0.2495	643.72	1	6000.0%	3	R.HMGIGK.R
	TK090902_P14_mitoch_2D_step13.1557.1557.1	1.3008	0.3431	855.9	3	7140.0%	1	K.GRHMGIGK.R

NPC2_MOUSE

83.6%

149

16442

7.7

(Q9Z0J0) Epididymal secretory protein E1 precursor

*	TK090902_P14_mitoch_2D_step01.1987.1987.1	1.4523	0.3077	1357.0	3	4090.0%	1	R.VPFPIPEPDGCK.S

DESM_MOUSE

83.6%

468

53367

5.3

(P31001) Desmin

	TK090902_P14_mitoch_2D_step07.2060.2060.1	1.5145	0.2399	999.88	1	6430.0%	1	R.HLKDEMAR.H
	TK090902_P14_mitoch_2D_step13.2626.2626.2	1.1858	0.212	2245.47	68	1940.0%	1	R.AQYETIAAKNISEAEEWYK.S

HXA9_MOUSE

83.5%

28.8%

271

29917

8.6

(P09631) Homeobox protein Hox-A9 (Hox-1.7)

	TK090902_P14_mitoch_2D_step08.3406.3406.3	2.6949	0.3388	4091.2	1	1820.0%	1	R.EKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHAR.S
*	TK090902_P14_mitoch_2D_step04.3902.3902.3	1.5179	0.2617	4059.36	2	1350.0%	1	-.MATTGALGNYYVDSFLLGADAADELGAGRYAPGTLGQPPR.Q

RA18_MOUSE

83.0%

509

57412

7.2

(Q9QXK2) Postreplication repair protein RAD18 (mRAD18Sc)

*	TK090902_P14_mitoch_2D_step01.2372.2372.1	1.5327	0.2328	1566.8	1	4230.0%	1	K.SAAEIVQEIESMEK.T
*	TK090902_P14_mitoch_2D_step09.5000.5000.1	0.8479	0.0386	1191.55	13	2220.0%	1	R.ASECVEIEPR.N

DHBK_MOUSE

82.9%

312

34742

9.5

(O70503) Putative steroid dehydrogenase KIK-I (EC 1.1.1.-)

*	TK090902_P14_mitoch_2D_step06.2641.2641.2	1.4468	0.1748	1805.02	4	3000.0%	4	K.IQKPTLDKPSAETFVK.S
*	TK090902_P14_mitoch_2D_step13.2934.2934.2	1.3738	0.0445	1869.01	101	2500.0%	1	K.SKGIFVQSVMPYLVATK.L

RBB9_MOUSE

82.9%

186

20912

6.0

(O88851) Retinoblastoma-binding protein 9 (RBBP-9) (B5T overexpressed gene protein) (Bog protein)

*	TK090902_P14_mitoch_2D_step11.3323.3323.2	2.1134	0.339	1887.16	1	4330.0%	2	R.GHFQNTEFHELISVVK.S
*	TK090902_P14_mitoch_2D_step09.2347.2347.3	1.6727	0.0602	2568.94	1	2500.0%	1	K.IKANCPHIVQFGSTDDPFLPWK.E

NTF2_HUMAN

82.7%

21.3%

127

14478

5.4

(P13662) Nuclear transport factor 2 (NTF-2) (Placental protein 15) (PP15) (P13662) Nuclear transport factor 2 (NTF-2) (Placental protein 15) (PP15)

	TK090902_P14_mitoch_2D_step07.3792.3792.3	2.6765	0.3411	3006.15	4	2310.0%	1	K.IQHSITAQDHQPTPDSCIISMVVGQLK.A

TO1B_MOUSE

82.6%

336

37878

7.8

(Q9ER41) Torsin B precursor

*	TK090902_P14_mitoch_2D_step02.3579.3579.2	0.7901	0.1554	2923.73	5	1400.0%	1	K.DMEHVLSVGVFNNKHSGLWHSGLIDK.N
	TK090902_P14_mitoch_2D_step12.2535.2535.2	1.0017	0.1462	2168.19	23	1760.0%	1	K.SNFVHLFVSTLHFPHEQK.I
	TK090902_P14_mitoch_2D_step09.2936.2936.1	1.6253	0.2067	1350.04	1	5000.0%	1	K.HSGLWHSGLIDK.N

Q9H5W1

82.5%

22.0%

132

14927

9.6

(Q9H5W1) Hypothetical protein FLJ22955

	TK090902_P14_mitoch_2D_step12.1675.1675.2	1.6626	0.3187	1261.94	2	4500.0%	1	R.HVVQPGYPAHR.R
	TK090902_P14_mitoch_2D_step11.2357.2357.2	1.5617	0.0026	2019.73	36	2350.0%	1	R.IVEVFGTEVLLENGDINR.K

IDE_HUMAN

82.2%

2.4%

1018

117890

6.8

(P14735) Insulin-degrading enzyme (EC 3.4.24.56) (Insulysin) (Insulinase) (Insulin protease)

*	TK090902_P14_mitoch_2D_step14.3294.3294.2	1.9382	0.3814	2512.86	1	3040.0%	1	K.SNPGHYLGHLIGHEGPGSLLSELK.S

PLSL_MOUSE

82.0%

627

70202

5.4

(Q61233) L-plastin (Lymphocyte cytosolic protein 1) (LCP-1) (65 kDa macrophage protein) (PP65)

	TK090902_P14_mitoch_2D_step06.3122.3122.2	2.1502	0.3355	2542.4	2	2380.0%	1	K.YPALHKPENQDIDWGALEGETR.E

Q924Z4

82.0%

380

45024

8.8

(Q924Z4) TRH3

*	TK090902_P14_mitoch_2D_step14.2821.2821.2	0.7876	0.0856	2986.79	26	1040.0%	2	R.FTYYLIAFVAGMAVTVDKPWFYDLR.K
*	TK090902_P14_mitoch_2D_step13.2534.2534.2	1.8789	0.444	2032.83	1	3530.0%	1	R.LRAPPNATLEHFYQTSGK.Q

Q9BU67

82.0%

300

32251

9.2

(Q9BU67) Hypothetical protein (Fragment)

	TK090902_P14_mitoch_2D_step12.2960.2960.2	1.8713	0.4555	2308.35	1	3330.0%	1	R.IINLGPVHPGPLSPEPQPMGVR.V
	TK090902_P14_mitoch_2D_step13.1256.1256.1	1.4407	0.1983	879.47	1	6670.0%	1	K.MHQHVVK.C

Q9Y4D6

81.4%

1983

221956

7.9

(Q9Y4D6) Hypothetical protein KIAA0624 (Fragment)

*	TK090902_P14_mitoch_2D_step12.2483.2483.2	2.0684	0.3389	1575.27	1	5450.0%	1	R.YESYHSQNVYQR.V
*	TK090902_P14_mitoch_2D_step03.4387.4387.2	0.7359	0.0643	2830.03	56	870.0%	1	K.HYNETSNMSIYDILRPGTPREGFK.T
*	TK090902_P14_mitoch_2D_step07.3827.3827.3	1.1125	0.2014	3224.32	12	1200.0%	1	K.NQFIVSHSENQERNDSPVPTHDEVVDVK.C
*	TK090902_P14_mitoch_2D_step06.2696.2696.1	1.268	0.1242	1589.88	4	2920.0%	1	K.NQFIVSHSENQER.N
*	TK090902_P14_mitoch_2D_step13.3101.3101.3	1.3334	0.0926	4051.69	8	1280.0%	1	K.NVSEEKSENCQQSINSSNSGPSSLPALSEVNIGNSQTR.R
*	TK090902_P14_mitoch_2D_step13.3138.3138.2	0.9554	0.0596	2395.5	1	2250.0%	1	R.IITNNHWSSALTDTQNAQYSK.C

TAC3_MOUSE

81.4%

1.4%

631

70627

4.6

(Q9JJ11) Transforming acidic coiled-coil containing protein 3 (ARNT interacting protein)

	TK090902_P14_mitoch_2D_step09.2076.2076.1	1.4634	0.0051	1094.17	9	5000.0%	3	R.KEVIEGYQK.N

Q9D1Q6

81.4%

406

46853

5.3

(Q9D1Q6) 1110001E24Rik protein (RIKEN cDNA 1110001E24 gene)

	TK090902_P14_mitoch_2D_step13.2156.2156.1	1.9863	0.1796	988.22	1	5710.0%	2	R.HPLLHIQK.T

EF1G_MOUSE

81.2%

437

50061

6.7

(Q9D8N0) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)

	TK090902_P14_mitoch_2D_step13.2660.2660.2	1.7891	0.3125	1709.92	1	4290.0%	2	R.VLSAPPHFHFGQTNR.T
*	TK090902_P14_mitoch_2D_step04.3835.3835.3	1.3339	0.052	3891.6	56	1250.0%	1	K.YSNEDTLSVALPYFWEHFDKDGWSLWYAEYR.F
	TK090902_P14_mitoch_2D_step09.2664.2664.1	1.0996	0.0279	1124.38	4	3890.0%	1	K.AKDPFAHLPK.S

CATZ_MOUSE

81.2%

306

33996

6.6

(Q9WUU7) Cathepsin Z precursor (EC 3.4.22.-)

*	TK090902_P14_mitoch_2D_step05.2593.2593.2	1.8617	0.4205	2637.76	1	2950.0%	3	R.NQHIPQYCGSCWAHGSTSAMADR.I

EF11_MOUSE

81.1%

23.2%

462

50164

9.0

(P10126) Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1 A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)

	TK090902_P14_mitoch_2D_step10.3508.3508.3	1.1575	0.0444	3470.83	9	1610.0%	1	K.SGDAAIVDMVPGKPMCVESFSDYPPLGRFAVR.D
	TK090902_P14_mitoch_2D_step01.3061.3061.2	1.4595	0.3082	2519.06	4	1740.0%	1	R.VETGVLKPGMVVTFAPVNVTTEVK.S
	TK090902_P14_mitoch_2D_step04.2261.2261.1	1.3201	0.0224	1122.16	1	5000.0%	1	K.STTTGHLIYK.C
	TK090902_P14_mitoch_2D_step15.3774.3774.3	1.7786	0.3337	4390.8	3	1250.0%	9	K.NDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK.F

Q8VDN3

80.9%

1024

105246

9.0

(Q8VDN3) Hypothetical 105.2 kDa protein (Fragment)

*	TK090902_P14_mitoch_2D_step09.4201.4201.3	1.3125	0.1165	3166.78	61	1370.0%	1	K.ISAPGVKMEGGSTEIGAQMPSLEGGLSTSDMK.L
*	TK090902_P14_mitoch_2D_step04.2433.2433.1	0.8278	0.1152	1296.02	23	1920.0%	1	K.GVGGKVHIGADGVK.M
*	TK090902_P14_mitoch_2D_step04.3342.3342.3	1.5141	0.0858	2524.36	2	2160.0%	1	K.LPHMKLPQFGISTPGSDLDINIK.G
*	TK090902_P14_mitoch_2D_step01.2121.2121.1	1.3645	0.4091	1527.01	1	4000.0%	2	K.APDVDVSVAGPDAALK.A
*	TK090902_P14_mitoch_2D_step06.5054.5054.1	0.9675	0.0303	1104.61	80	2220.0%	1	R.EVGVDVNFPK.V
*	TK090902_P14_mitoch_2D_step04.2711.2711.1	1.1954	0.1858	963.99	15	3750.0%	1	K.LHAPGLDLK.G
*	TK090902_P14_mitoch_2D_step12.2705.2705.1	1.0504	0.1095	1541.19	23	2000.0%	1	K.VGISAPKLGGGEVDLK.G

NEBU_HUMAN

80.5%

1.0%

6669

773230

9.1

(P20929) Nebulin

	TK090902_P14_mitoch_2D_step03.3130.3130.2	1.2789	0.0812	2555.85	1	2620.0%	1	K.QDYNEWYKGLGWSPAGSLEVEK.A
*	TK090902_P14_mitoch_2D_step13.1485.1485.1	1.32	0.069	797.57	2	7000.0%	1	K.EDYENK.I
	TK090902_P14_mitoch_2D_step06.2585.2585.1	0.8307	0.0254	1410.79	5	3180.0%	1	K.ANLINTSDKLYR.M
	TK090902_P14_mitoch_2D_step06.2309.2309.1	1.961	0.177	1182.63	1	5560.0%	1	K.QLSDLNYKAK.H
	TK090902_P14_mitoch_2D_step14.1224.1224.3	1.4315	0.0999	2031.95	2	2940.0%	1	K.YSTLMDSMNMVLAQNNAK.I

Q9C013

80.5%

2.4%

2069

240849

5.0

(Q9C013) Ninein isotype 2

	TK090902_P14_mitoch_2D_step13.1837.1837.1	1.7295	0.1941	1143.19	2	5560.0%	2	K.QKDVLSHGEK.E
	TK090902_P14_mitoch_2D_step13.5109.5109.3	1.1775	0.03	4263.94	17	860.0%	1	K.ALDFSLDGNINLTELTLALEYELLVTKNSTHQAALASFK.A
	TK090902_P14_mitoch_2D_step07.4457.4457.2	1.0735	0.1589	3012.2	37	1350.0%	1	K.ALDFSLDGNINLTELTLALEYELLVTK.N

Q9CZB4

80.4%

266

29329

9.3

(Q9CZB4) 9430083G14Rik protein

	TK090902_P14_mitoch_2D_step06.2098.2098.1	1.4639	0.271	768.42	5	6670.0%	1	K.HSVSLPK.E

H4_HUMAN

80.4%

43.1%

102

11236

11.4

(P02304) Histone H4 (P02304) Histone H4

	TK090902_P14_mitoch_2D_step01.2672.2672.1	1.4018	0.0422	988.35	5	5710.0%	1	K.VFLENVIR.D
	TK090902_P14_mitoch_2D_step05.3355.3355.1	1.3253	0.0762	1438.7	13	2920.0%	1	R.KTVTAMDVVYALK.R
	TK090902_P14_mitoch_2D_step12.2053.2053.1	1.3107	0.0493	1338.78	2	4000.0%	2	K.RISGLIYEETR.G
	TK090902_P14_mitoch_2D_step03.2169.2169.1	1.2877	0.1533	1327.92	1	5000.0%	1	R.DNIQGITKPAIR.R

O88464

80.0%

356

41765

8.6

(O88464) Heparan sulfate 2-sulfotransferase

	TK090902_P14_mitoch_2D_step13.2400.2400.1	1.9194	0.1833	1245.01	4	6110.0%	1	K.KKPIYINVIR.D
	TK090902_P14_mitoch_2D_step11.3850.3850.2	0.9534	0.0080	1834.88	201	2310.0%	1	R.DPIERLVSYYYFLR.F
	TK090902_P14_mitoch_2D_step06.2825.2825.3	1.3856	0.0369	2091.9	37	2810.0%	1	R.EKDGDLYILAQNFFYEK.I

Q96JM4

80.0%

1227

142754

6.2

(Q96JM4) Hypothetical protein KIAA1801 (Fragment)

*	TK090902_P14_mitoch_2D_step12.4071.4071.3	1.3824	0.0212	3894.95	19	1210.0%	1	R.TEEHNQLGSAGFLALCQSQIREFNLLIENYITGK.G
*	TK090902_P14_mitoch_2D_step09.2847.2847.1	2.0141	0.1295	1236.05	5	5000.0%	4	R.IGYSFFLEEK.L
*	TK090902_P14_mitoch_2D_step03.3498.3498.1	0.5033	0.1024	1314.84	15	1360.0%	1	K.QQNNAAVKIQAK.Y
*	TK090902_P14_mitoch_2D_step13.1147.1147.1	1.157	0.0219	864.93	36	4290.0%	1	R.GDVTITKK.D

HMGT_MOUSE

79.9%

199

23384

9.7

(P40630) Testis-specific high mobility group protein (TS-HMG)

	TK090902_P14_mitoch_2D_step10.3277.3277.2	1.2649	0.1783	2106.14	43	1880.0%	1	R.YDNEMKSWEEQMAEVGR.S
	TK090902_P14_mitoch_2D_step04.2983.2983.1	1.4765	0.2387	1012.41	3	5000.0%	1	R.ELILLGKPK.R

Q9H625

79.6%

506

58293

9.0

(Q9H625) Hypothetical protein FLJ22662

*	TK090902_P14_mitoch_2D_step05.2977.2977.2	1.9727	0.3541	1925.59	1	4330.0%	1	K.YNSGTYNNQYMVLDLK.K

PRAX_HUMAN

79.4%

1461

155003

7.7

(Q9BXM0) Periaxin

*	TK090902_P14_mitoch_2D_step11.2627.2627.3	1.3831	0.0092	2744.67	8	1670.0%	1	K.GAGEAGLLPALDLSIPQLSLDAHLPSGK.V
*	TK090902_P14_mitoch_2D_step01.0570.0570.1	1.1814	0.0051	883.98	64	4290.0%	1	K.APEVKLPK.V
*	TK090902_P14_mitoch_2D_step11.2661.2661.3	1.5943	0.0735	2375.5	28	1770.0%	1	R.LPSVGFSETGAPGPARMEGAQAAAV.-
*	TK090902_P14_mitoch_2D_step01.1007.1007.1	0.8213	0.0761	989.68	4	3330.0%	1	R.LAAAAPPPRK.A
*	TK090902_P14_mitoch_2D_step01.1419.1419.1	1.2812	0.0157	925.53	9	6430.0%	3	K.LPEVKLPK.V
*	TK090902_P14_mitoch_2D_step12.3791.3791.3	2.3583	0.0319	3008.75	4	2020.0%	1	R.VPSVEIVTPQLPAVEIEEGRLEMIETK.V

MKKS_HUMAN

79.3%

570

62342

7.1

(Q9NPJ1) McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin

*	TK090902_P14_mitoch_2D_step01.1789.1789.1	1.5504	0.212	770.18	2	5830.0%	1	K.SLIVPLK.G
*	TK090902_P14_mitoch_2D_step13.3176.3176.3	1.64	0.066	2873.52	34	1960.0%	1	K.FGSKHFFHLIPNEATICSLLLCNR.N

TPM3_MOUSE

79.3%

284

32863

4.7

(P21107) Tropomyosin alpha 3 chain (Tropomyosin 3) (Tropomyosin gamma)

	TK090902_P14_mitoch_2D_step05.2925.2925.1	1.6699	0.191	1285.97	2	5000.0%	1	R.KLVIIEGDLER.T

MKKS_MOUSE

79.3%

6.7%

570

61952

7.4

(Q9JI70) McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin

	TK090902_P14_mitoch_2D_step15.3210.3210.3	1.9006	0.2117	3353.19	96	1330.0%	1	R.STYHPFAPQTCLPQAALGSASNLTVDCFTAK.L
	TK090902_P14_mitoch_2D_step01.1789.1789.1	1.5504	0.212	770.18	2	5830.0%	1	K.SIIVPLK.G

VWF_HUMAN

79.3%

2813

309296

5.5

(P04275) Von Willebrand factor precursor (vWF)

*	TK090902_P14_mitoch_2D_step05.2268.2268.1	1.5098	0.225	1444.81	1	5000.0%	4	K.RVTGCPPFDEHK.C
*	TK090902_P14_mitoch_2D_step01.1315.1315.1	0.9069	0.1006	1004.81	63	2500.0%	1	R.GGQIMTLKR.D
*	TK090902_P14_mitoch_2D_step14.1371.1371.1	0.7908	0.1157	1292.64	1	4500.0%	1	K.RVSPPSCPPHR.L
*	TK090902_P14_mitoch_2D_step09.3032.3032.2	1.6915	0.027	1914.14	7	3000.0%	1	R.CHPLVDPEPFVALCEK.T
*	TK090902_P14_mitoch_2D_step05.3527.3527.3	1.0074	0.0985	1624.38	116	1920.0%	1	R.YLSDHSFLVSQGDR.E
*	TK090902_P14_mitoch_2D_step07.3432.3432.2	0.9001	0.0682	2416.85	113	1590.0%	1	R.LPGDIQVVPIGVGPNANVQELER.I

ENP1_MOUSE

79.3%

510

57205

5.9

(P55772) Ectonucleoside triphosphate diphosphohydrolase 1 (EC 3.6.1.5) (NTPDase1) (Ecto-ATP diphosphohydrolase) (ATPDase) (Lymphoid cell activation antigen) (Ecto-apyrase) (CD39 antigen)

*	TK090902_P14_mitoch_2D_step03.4695.4695.3	0.7143	0.07	4055.95	146	380.0%	1	K.YLSEYCFSGAYILSLLQGYNFTDSSWEQIHFMGK.I
*	TK090902_P14_mitoch_2D_step13.2293.2293.2	2.0837	0.331	1641.38	1	5000.0%	1	K.HHQTPVYLGATAGMR.L

Q9D842

79.0%

499

55029

5.2

(Q9D842) 2010301N04Rik protein

*	TK090902_P14_mitoch_2D_step14.2096.2096.3	1.593	0.0649	4664.51	11	1120.0%	1	R.NPLHFQHFSHPGDSDYGEVHGTDEGVIGDRPECPYGASCYR.K
*	TK090902_P14_mitoch_2D_step03.2479.2479.1	1.5163	0.1239	1014.94	11	5000.0%	3	K.EAKSSLHLK.H

Q9NXZ0

78.8%

527

61493

8.8

(Q9NXZ0) Putative cell cycle control protein

	TK090902_P14_mitoch_2D_step01.1627.1627.1	1.7654	0.1873	1591.76	2	4620.0%	1	R.HGLHLSQENGEKIK.H
	TK090902_P14_mitoch_2D_step05.1849.1849.3	0.8484	0.0746	2616.84	2	1590.0%	1	R.YVILIYLQTILGVPSLEEVINPK.Q
	TK090902_P14_mitoch_2D_step08.2068.2068.2	1.3968	0.0064	1095.05	21	6250.0%	1	R.KNNIENFSK.D

OCRL_HUMAN

78.8%

901

104133

6.6

(Q01968) Inositol polyphosphate 5-phosphatase OCRL-1 (EC 3.1.3.-) (Lowe's oculocerebrorenal syndrome protein)

*	TK090902_P14_mitoch_2D_step13.2358.2358.2	2.3903	0.1787	2105.54	1	4120.0%	1	R.EVPVTKLIDLEEDSFLEK.E
*	TK090902_P14_mitoch_2D_step07.2643.2643.1	1.2811	0.0346	1367.07	90	3180.0%	1	K.INSQNQPTGIHR.E
*	TK090902_P14_mitoch_2D_step13.2077.2077.3	1.6779	0.0103	2787.79	10	1960.0%	1	K.DYFLTISGNYLPSCFGTSLEALCR.M

Q9D9F6

78.4%

229

25589

6.4

(Q9D9F6) 1700082C19Rik protein

	TK090902_P14_mitoch_2D_step13.3173.3173.1	1.6148	0.1918	1522.99	1	4580.0%	1	R.KAHQLWLSVEALK.Y
	TK090902_P14_mitoch_2D_step06.3425.3425.1	1.2779	0.0131	1394.92	6	3640.0%	1	K.AHQLWLSVEALK.Y

Q91VE3

78.2%

249

27257

8.1

(Q91VE3) Thymopsin (Stratum corneum chymotryptic enzyme)

*	TK090902_P14_mitoch_2D_step12.2156.2156.2	2.0571	0.3323	1880.35	1	4000.0%	3	K.THVNDIMLVRLDEPVK.M

Q13129

78.1%

1914

217899

6.8

(Q13129) RLF

*	TK090902_P14_mitoch_2D_step07.2289.2289.1	1.6009	0.0422	1301.88	2	5000.0%	2	R.RHFMSAFHLR.E
*	TK090902_P14_mitoch_2D_step08.2059.2059.3	1.4893	0.1607	2202.95	393	1670.0%	1	K.ALAKHCSDSHNLDHIEEPK.V
*	TK090902_P14_mitoch_2D_step08.4488.4488.3	0.9361	0.0431	4628.65	36	730.0%	1	K.ENSDSNSSDQLSHSSSASMNEELIDTLDHSETMQDVLLSNEK.V

Q9CQV1

77.9%

21.6%

125

13785

9.6

(Q9CQV1) 2010110I09Rik protein (Mitochondria associated granulocyte macrophage CSF signaling molecule Magmas precursor) (RIKEN cDNA 2010110I09 gene) (CGI-136)

*	TK090902_P14_mitoch_2D_step06.3513.3513.2	1.6527	0.2768	2724.32	1	2500.0%	2	R.AGHQSAAASNLSGLSLQEAQQILNVSK.L

SKD3_MOUSE

77.9%

677

76004

8.5

(Q60649) SKD3 protein

*	TK090902_P14_mitoch_2D_step06.2713.2713.1	1.4554	0.2441	1390.22	1	4090.0%	1	R.KLDIQAPLHPEK.V
*	TK090902_P14_mitoch_2D_step13.1562.1562.1	0.8244	0.0477	740.95	5	3000.0%	2	K.RPPTLR.L

Q9QZ83

77.7%

19.3%

393

43601

5.2

(Q9QZ83) Gamma actin-like protein

*	TK090902_P14_mitoch_2D_step03.2990.2990.2	1.6318	0.231	2219.3	2	3000.0%	2	K.DLYANTVLSGGTTMYPGLADR.M
*	TK090902_P14_mitoch_2D_step08.3027.3027.3	1.8163	0.1875	2112.96	7	2780.0%	1	R.VAPEEHPVLLTEAPLNPKR.N
*	TK090902_P14_mitoch_2D_step12.2948.2948.3	0.9141	0.0714	3640.07	20	1140.0%	1	K.ANFAGDDAPGPSSLSIVGRPRHQGVMVGIMVGMGQK.D

DBS_HUMAN

77.4%

1108

123984

6.6

(O15068) Guanine nucleotide exchange factor DBS (DBL's big sister) (MCF2 transforming sequence-like protein) (Fragment)

*	TK090902_P14_mitoch_2D_step05.4648.4648.3	1.076	0.0688	4734.38	16	730.0%	1	R.ELQAEGSEPSVNQDQLDNQATVQRLLAQLNETEAAFDEFWAK.H
*	TK090902_P14_mitoch_2D_step03.2494.2494.1	1.4568	0.2364	1126.71	1	6110.0%	1	K.EGHSVLESLR.E

ADDA_MOUSE

77.3%

8.2%

735

80647

5.9

(Q9QYC0) Alpha adducin (Erythrocyte adducin alpha subunit)

*	TK090902_P14_mitoch_2D_step13.2522.2522.2	1.7997	0.4089	1765.45	1	5000.0%	1	K.CIVHIHTPAGAAVSAMK.C
	TK090902_P14_mitoch_2D_step09.1636.1636.1	0.5563	0.1806	819.49	2	4170.0%	1	R.TPSFLKK.S
*	TK090902_P14_mitoch_2D_step13.3229.3229.3	1.2491	0.0205	4035.92	26	1140.0%	1	K.CGLLPISPEALSLGDVAYHDYHGILVDEEEKILIQK.N

Q9D0K2

77.2%

21.5%

520

55989

8.5

(Q9D0K2) 2610008O03Rik protein (RIKEN cDNA 2610008O03 gene)

*	TK090902_P14_mitoch_2D_step02.4031.4031.2	1.8372	0.363	2826.83	3	1850.0%	1	K.DIPNGATLLVGGFGLCGIPENLIGALLK.T
*	TK090902_P14_mitoch_2D_step09.4125.4125.2	1.1643	0.1427	2839.75	11	1540.0%	2	K.AAGTTVVEVEEIVDIGSFAPEDIHIPK.I
*	TK090902_P14_mitoch_2D_step03.3485.3485.3	1.4984	0.0199	3831.28	1	1590.0%	2	R.MISSYVGENAEFERQFLSGELEVELTPQGTLAER.I
*	TK090902_P14_mitoch_2D_step04.3307.3307.2	0.9785	0.0857	2377.29	1	2730.0%	1	K.DLTAVSNNAGVDNFGLGLLLRSK.Q

Q9D957

77.2%

218

25828

10.3

(Q9D957) 0610007F04Rik protein

	TK090902_P14_mitoch_2D_step04.2170.2170.2	1.8295	0.3678	1643.05	1	3850.0%	1	R.VRPDYTAQNLDHGR.A

APA4_MOUSE

77.1%

395

45029

5.6

(P06728) Apolipoprotein A-IV precursor (Apo-AIV)

*	TK090902_P14_mitoch_2D_step05.4468.4468.2	1.1634	0.1491	2733.43	2	1960.0%	1	R.MQTTIKENVDNLHTSMMPLATNLK.D
*	TK090902_P14_mitoch_2D_step03.3666.3666.2	2.2979	0.2762	2026.67	1	4710.0%	2	K.LVPFVVQLSGHLAKETER.V

Q9DBN4

76.8%

303

32715

9.4

(Q9DBN4) Adult male liver cDNA, RIKEN full-length enriched library, clone:1300002B20, full insert sequence

*	TK090902_P14_mitoch_2D_step08.1823.1823.2	1.7963	0.3897	1789.47	1	3530.0%	1	K.HPASAQSTPSSTPHASPK.Q

Q8R339

76.4%

642

67942

8.6

(Q8R339) Hypothetical 67.9 kDa protein

*	TK090902_P14_mitoch_2D_step01.3164.3164.1	1.5258	0.2171	1526.2	2	3080.0%	2	R.DVPLGAPLCIIVEK.Q
*	TK090902_P14_mitoch_2D_step03.3733.3733.2	1.0624	0.2122	2393.54	2	2140.0%	1	K.ILVPEGTRDVPLGAPLCIIVEK.Q

Q9CZK1

76.2%

2.3%

437

47247

5.6

(Q9CZK1) 1300012C15Rik protein

	TK090902_P14_mitoch_2D_step07.1999.1999.1	1.8605	0.0447	1155.87	1	5560.0%	2	R.NHAYEHSLGK.L

Q9DC67

76.2%

2.4%

462

50537

8.3

(Q9DC67) 1010001P06Rik protein

*	TK090902_P14_mitoch_2D_step05.2541.2541.1	1.5586	0.1909	1323.09	3	4500.0%	1	-.MVVTQLSLEFR.F

HME2_MOUSE

76.0%

324

33817

9.4

(P09066) Homeobox protein engrailed-2 (Mo-En-2)

*	TK090902_P14_mitoch_2D_step13.1137.1137.1	1.7765	0.1789	1341.97	1	5380.0%	1	K.KPGDPGGSLDGVLK.A

GALT_HUMAN

76.0%

368

39573

10.2

(O60755) Galanin receptor type 3 (GAL3-R) (GALR3)

*	TK090902_P14_mitoch_2D_step10.4896.4896.2	2.3077	0.2677	3008.96	1	2600.0%	4	R.LASHCLAYANSCLNPLVYALASRHFR.A

HG2A_MOUSE

75.9%

279

31557

8.3

(P04441) H-2 class II histocompatibility antigen, gamma chain (MHC class II associated invariant chain) (Ia antigen-associated invariant chain) (Ii) (CD74 antigen)

*	TK090902_P14_mitoch_2D_step08.3002.3002.2	1.87	0.3454	2188.25	1	3060.0%	2	K.CQEEVSHIPAVYPGAFRPK.C

Q9H760

75.8%

200

21739

8.8

(Q9H760) Hypothetical protein FLJ21277

*	TK090902_P14_mitoch_2D_step13.2754.2754.2	0.8435	0.0633	1866.23	37	2060.0%	1	K.LGPQLSSGAWNQGPLPSR.D
*	TK090902_P14_mitoch_2D_step12.1989.1989.1	1.8032	0.1585	1215.11	5	4500.0%	1	R.RDLGLGAWVAR.I

CATH_MOUSE

75.7%

333

37184

8.4

(P49935) Cathepsin H precursor (EC 3.4.22.16) (Cathepsin B3) (Cathepsin BA)

*	TK090902_P14_mitoch_2D_step05.1944.1944.1	1.4516	0.2859	928.18	1	5620.0%	2	K.KGNVVSPVK.N

Q9BRS8

75.5%

491

54737

8.3

(Q9BRS8) Hypothetical protein

*	TK090902_P14_mitoch_2D_step04.2529.2529.2	2.1924	0.2999	1955.92	1	3890.0%	1	-.MAQSGGEARPGPKTAVQIR.V

Q9D8X5

75.5%

292

33574

4.8

(Q9D8X5) 1810022F04Rik protein (RIKEN cDNA 1810022F04 gene)

	TK090902_P14_mitoch_2D_step03.4871.4871.2	1.0592	0.0052	2882.08	2	2080.0%	4	K.FNLTEDMYSQDSIDLLANSGLQFQK.H
	TK090902_P14_mitoch_2D_step14.3152.3152.3	1.5684	0.0048	3358.44	123	1250.0%	1	K.IREIVLSYSYIAMDTEFPGVVVRPIGEFR.S

ADFP_HUMAN

75.4%

437

48075

6.8

(Q99541) Adipophilin (Adipose differentiation-related protein) (ADRP)

*	TK090902_P14_mitoch_2D_step12.2880.2880.2	2.1605	0.3091	1725.65	1	5360.0%	3	K.NVYSANQKIQDAQDK.L

PLE1_MOUSE

75.4%

964

111662

8.2

(Q9QXS1) Plectin 1 (PLTN) (PCN) (Fragment)

	TK090902_P14_mitoch_2D_step06.3285.3285.2	1.9778	0.3308	2038.01	1	3610.0%	1	R.DGHNLISLLEVLSGDSLPR.E
	TK090902_P14_mitoch_2D_step14.1341.1341.1	0.6032	0.0696	1217.47	7	1670.0%	1	R.RPELEDSTLR.Y
	TK090902_P14_mitoch_2D_step01.1041.1041.1	0.8819	0.022	1418.77	73	2730.0%	1	R.LEDLLQDAQDEK.E
*	TK090902_P14_mitoch_2D_step05.3436.3436.2	1.5307	0.1247	2425.19	10	2140.0%	1	R.RIDSAEWGVDLPSVEAQLGSHR.G

Z147_HUMAN

75.3%

630

70990

8.1

(Q14258) Zinc finger protein 147 (Estrogen responsive finger protein) (Efp)

*	TK090902_P14_mitoch_2D_step09.2579.2579.2	1.7906	0.3737	2071.51	1	3000.0%	1	K.QAGLEAAAKATSSHPNSTSLK.A

RT16_MOUSE

75.3%

135

15192

9.7

(Q9CPX7) 28S ribosomal protein S16, mitochondrial precursor (MRP-S16)

	TK090902_P14_mitoch_2D_step13.2376.2376.2	1.7957	0.3687	1751.83	1	4640.0%	1	R.HWIGCGAHLSKPMEK.L

Q8R2V3

75.2%

2.3%

642

75995

9.8

(Q8R2V3) Hypothetical 76.0 kDa protein (Fragment)

*	TK090902_P14_mitoch_2D_step08.3212.3212.2	1.9444	0.1612	1758.57	5	4290.0%	4	R.LQTSCGDSIQMKEMK.E

Q9QZR9

74.5%

9.5%

1682

164096

8.5

(Q9QZR9) Alpha 4 collagen IV

*	TK090902_P14_mitoch_2D_step03.2285.2285.1	1.4392	0.2603	1015.86	4	3500.0%	6	K.GAPGVGIKGEK.G
*	TK090902_P14_mitoch_2D_step03.4215.4215.3	0.9857	0.0874	4397.18	5	870.0%	5	R.LDCAPGKPGKPGLPGLPGAPGPEGPPGSDVIYCRPGCPGPMGEK.G
*	TK090902_P14_mitoch_2D_step14.3804.3804.2	0.9508	0.1332	2798.04	12	1720.0%	1	R.GDAGDFGRPGPAGVKGPLGSPGLNGLHGLK.G
*	TK090902_P14_mitoch_2D_step01.2173.2173.1	0.8737	0.1799	1204.87	144	2270.0%	1	R.GKPGVDGYNGSR.G
*	TK090902_P14_mitoch_2D_step06.3565.3565.2	1.6745	0.0239	2326.8	3	2610.0%	1	R.GKPGMSGIPGPPGFRGDMGDPGIK.G
*	TK090902_P14_mitoch_2D_step15.4351.4351.3	1.6916	0.1054	3553.05	8	1380.0%	1	R.GAPGIPGQPGLPGTPGDPGAPGWKGQPGDMGPSGPAGMK.G

Q96SH3

74.4%

1172

135068

9.1

(Q96SH3) BA430M15.1 (Novel protein (Ortholog of rat four repeat ion channel)) (Fragment)

*	TK090902_P14_mitoch_2D_step11.3054.3054.3	2.1145	0.1807	3030.57	1	2120.0%	3	K.SFFIIVGMFLLLLCYAFAGVVLFGTVK.Y
*	TK090902_P14_mitoch_2D_step01.2655.2655.1	1.541	0.1974	1190.78	2	4440.0%	1	R.NAQREDSEIK.M
*	TK090902_P14_mitoch_2D_step12.3585.3585.3	1.9152	0.0194	2971.29	2	1920.0%	1	K.EIFLVSILLLTLMLVFASFGVQLFAGK.L
*	TK090902_P14_mitoch_2D_step12.2365.2365.2	0.7207	0.0294	1891.0	29	1470.0%	1	R.LPSAPKPISHSVSSVNLR.F

Q9DA23

74.3%

462

51669

8.9

(Q9DA23) 1700022M03Rik protein

*	TK090902_P14_mitoch_2D_step04.3685.3685.2	2.1137	0.3075	2290.64	1	3160.0%	1	K.FIVITSIISLLLLILNIFIK.C
*	TK090902_P14_mitoch_2D_step08.3272.3272.2	1.1792	0.2665	2983.46	2	1400.0%	3	R.STYSSVCGRDETEYFSPCFAGCLASK.H

Q9CZX8

74.2%

13.2%

212

22940

10.8

(Q9CZX8) Ribosomal protein S19

*	TK090902_P14_mitoch_2D_step06.1708.1708.3	1.0026	0.1126	1794.53	5	1670.0%	1	R.YASVETERGGGGAGGHTGK.G
	TK090902_P14_mitoch_2D_step01.1677.1677.1	1.6755	0.18	971.17	1	5620.0%	1	R.VLQALEGLK.M
*	TK090902_P14_mitoch_2D_step01.0205.0205.1	0.8521	0.1477	858.28	8	3500.0%	1	R.GGGGAGGHTGK.G

TYPH_HUMAN

74.1%

482

49982

5.5

(P19971) Thymidine phosphorylase precursor (EC 2.4.2.4) (TdRPase) (TP) (Platelet-derived endothelial cell growth factor) (PD-ECGF) (Gliostatin)

	TK090902_P14_mitoch_2D_step01.2566.2566.1	0.838	0.1403	1585.89	74	2000.0%	1	R.ELAKTLVGVGASLGLR.V
	TK090902_P14_mitoch_2D_step07.2913.2913.2	2.3026	0.2507	1733.97	2	4670.0%	1	R.FERMLAAQGVDPGLAR.A

Q9UH87

74.0%

594

68361

6.4

(Q9UH87) Transposase-like protein

	TK090902_P14_mitoch_2D_step10.1845.1845.2	1.1049	0.0593	950.9	2	5710.0%	1	R.EKLSAFVR.K

Q9H5R9

73.9%

22.0%

268

30680

4.7

(Q9H5R9) Hypothetical protein FLJ23129

*	TK090902_P14_mitoch_2D_step08.2196.2196.1	1.6293	0.084	699.95	9	7000.0%	7	R.QLPVLK.E
*	TK090902_P14_mitoch_2D_step07.3979.3979.3	1.4109	0.1548	3467.09	13	1430.0%	1	K.EEEEEIHAEESTIPANLERLWSFSCDLTK.G
*	TK090902_P14_mitoch_2D_step04.2561.2561.3	1.6196	0.0872	2794.9	16	1850.0%	1	K.EPEPEEPEDVLESAKHEEVEEESK.K

Q8VGP3

73.7%

8.6%

304

34001

8.8

(Q8VGP3) Olfactory receptor MOR227-1

	TK090902_P14_mitoch_2D_step12.4807.4807.2	1.5462	0.1868	2981.93	1	1800.0%	4	K.LVAVFYTVITPMLNPIIYTLRNAEVK.N

NCF4_HUMAN

73.7%

121

339

39032

6.8

(Q15080) Neutrophil cytosol factor 4 (NCF-4) (Neutrophil NADPH oxidase factor 4) (p40-phox) (p40phox)

*	TK090902_P14_mitoch_2D_step11.3633.3633.2	1.9841	0.1432	1839.13	6	3330.0%	11	K.LELNFKAGDVIFLLSR.I

STRN_HUMAN

73.7%

780

86144

5.3

(O43815) Striatin

*	TK090902_P14_mitoch_2D_step01.1667.1667.1	0.5538	0.1854	1089.62	5	2220.0%	1	K.KALPDSGEDR.D
*	TK090902_P14_mitoch_2D_step08.2928.2928.2	2.345	0.2699	2022.21	6	2940.0%	1	R.LWNTTEVAPALSVFNDIK.E

Q9JJR4

73.7%

15.2%

243

27198

6.4

(Q9JJR4) Magea9 protein

*	TK090902_P14_mitoch_2D_step02.2708.2708.1	0.7249	0.0473	1472.74	1	3000.0%	1	K.VIRDDEQYYNR.I
*	TK090902_P14_mitoch_2D_step12.3343.3343.3	2.7648	0.3051	2802.72	4	2200.0%	1	R.EQGLMDEGEESTDNNTSDSTSSTLPR.K

RLA0_MOUSE

73.2%

13.2%

317

34216

6.2

(P14869) 60S acidic ribosomal protein P0 (L10E)

	TK090902_P14_mitoch_2D_step04.2027.2027.1	1.7371	0.1657	1223.09	1	5500.0%	1	R.GHLENNPALEK.L
*	TK090902_P14_mitoch_2D_step01.2722.2722.2	1.7807	0.2385	2698.79	1	1830.0%	1	K.AFLADPSAFAAAAPAAAATTAAPAAAAAPAK.A

P2AA_MOUSE

73.2%

309

35608

5.5

(P13353) Serine/threonine protein phosphatase 2A, catalytic subunit, alpha isoform (EC 3.1.3.16) (PP2A-alpha)

	TK090902_P14_mitoch_2D_step11.2467.2467.1	1.5298	0.1964	952.16	3	6430.0%	1	R.RGEPHVTR.R

Q9Z1P6

73.2%

23.9%

113

12576

10.2

(Q9Z1P6) NADH oxidoreductase (2400007M02RIK protein)

	TK090902_P14_mitoch_2D_step07.1897.1897.1	1.4345	0.2658	836.01	3	5000.0%	4	K.LPVGPSHK.L
*	TK090902_P14_mitoch_2D_step01.0670.0670.1	0.9671	0.144	1416.78	13	2500.0%	1	R.EVVPPSIIMSSQK.A
	TK090902_P14_mitoch_2D_step14.1848.1848.1	0.7565	0.0812	1482.99	9	1540.0%	1	R.TQPPPKLPVGPSHK.L

PHS1_MOUSE

73.2%

0.9%

850

97431

7.1

(Q9ET01) Glycogen phosphorylase, liver form (EC 2.4.1.1)

	TK090902_P14_mitoch_2D_step13.2720.2720.1	1.6193	0.1752	996.35	2	5710.0%	1	R.HLHFTLVK.D

Q9BQP6

73.1%

413

47098

9.7

(Q9BQP6) DJ223E3.1 (Putative secreted protein ZSIG13)

*	TK090902_P14_mitoch_2D_step13.3129.3129.1	1.6273	0.1733	1534.83	2	3460.0%	1	R.TFHLTSPAFEADAK.M
*	TK090902_P14_mitoch_2D_step14.4894.4894.2	1.2433	0.099	2038.62	31	2350.0%	1	K.IIAVYSGHQWVDVHGVQK.D

Q9H4A0

73.0%

1.8%

1452

158481

9.7

(Q9H4A0) CDC2L5 protein kinase

*	TK090902_P14_mitoch_2D_step12.3279.3279.2	1.7708	0.3665	2612.45	5	2400.0%	1	R.TNTPQGVLPSSQLKSQGSSNVAPGEK.Q

Q9CQJ8

72.6%

179

21984

7.8

(Q9CQJ8) 1190008J14Rik protein

*	TK090902_P14_mitoch_2D_step09.2676.2676.1	1.4914	0.1763	1240.1	5	4380.0%	3	R.HLESWCIHR.D

Q9CQC7

72.5%

129

15081

9.9

(Q9CQC7) 0610006N12Rik protein

*	TK090902_P14_mitoch_2D_step09.2716.2716.2	1.2337	0.1898	1408.61	23	3640.0%	1	K.RVSHIEDPALIR.W

Q8TDL7

72.0%

893

97920

5.7

(Q8TDL7) Spermatogenesis associated factor

*	TK090902_P14_mitoch_2D_step08.2515.2515.2	2.1177	0.2934	1953.87	1	4330.0%	1	K.DMEINEEELTGCILRK.L
*	TK090902_P14_mitoch_2D_step05.3227.3227.3	1.1639	0.0083	2914.97	70	1440.0%	1	R.RVPHLLTEAELLQLANSAHGYVGADLK.V

O94836

71.9%

1096

122940

9.1

(O94836) Hypothetical protein KIAA0731 (Fragment)

*	TK090902_P14_mitoch_2D_step10.3937.3937.3	2.9366	0.2382	3055.32	5	1880.0%	2	K.VNPWTKNALPPVLTTVNGQSPPEHSAPAK.V

Q9CPT4

71.6%

26.5%

166

17982

6.8

(Q9CPT4) DNA segment, Chr 17, Wayne state University 104, expressed (Stromal cell-derived growth factor SF20/IL25)

*	TK090902_P14_mitoch_2D_step13.1622.1622.2	2.1755	0.2739	1172.35	4	5500.0%	1	K.TAVSHRPGAFK.A
*	TK090902_P14_mitoch_2D_step08.3662.3662.3	1.3002	0.0194	3336.85	39	1330.0%	1	K.LAAAVSEPTTVPFDVRPGGVVHSFSQDVGPGNK.F

Q62219

71.6%

14.0%

444

48228

7.2

(Q62219) Transforming growth factor beta 1 induced transcript 1 (HIC-5)

*	TK090902_P14_mitoch_2D_step11.1998.1998.2	1.8101	0.339	2024.62	1	3160.0%	2	R.VQNHLPASGPPQPPAASPTR.E
*	TK090902_P14_mitoch_2D_step02.3440.3440.3	1.3735	0.1013	4567.08	6	1280.0%	2	K.ERPPETLTPPPPYGHQPQTGSGESSGTTGDKDHLYSTVCKPR.S

Q9DCL7

71.4%

461

53631

6.6

(Q9DCL7) 0610025O11Rik protein

	TK090902_P14_mitoch_2D_step08.3004.3004.1	1.5789	0.1754	1462.07	4	3640.0%	1	K.HHEGFTMWGSDR.S

Q8R0K1

71.3%

749

87280

6.8

(Q8R0K1) Hypothetical 87.3 kDa protein (Fragment)

	TK090902_P14_mitoch_2D_step01.1387.1387.1	1.3493	0.1675	1009.56	5	5710.0%	1	K.YKLNVDQK.V
	TK090902_P14_mitoch_2D_step08.4066.4066.2	1.9396	0.3241	2022.48	1	4380.0%	1	K.TFNEPGSEYFIFLLSTR.A

Q61162

70.3%

19.7%

310

34350

5.2

(Q61162) Maternal transcript Maid

*	TK090902_P14_mitoch_2D_step06.3697.3697.2	2.1638	0.2753	1860.96	3	3670.0%	1	K.DEVAQLDDIVGHFLMR.S
*	TK090902_P14_mitoch_2D_step05.4828.4828.3	1.1247	4.0E-4	4374.64	4	810.0%	1	K.DEVAQLDDIVGHFLMRSAPVWIDLVLSIYPPVCHLTVR.I
*	TK090902_P14_mitoch_2D_step11.1991.1991.2	0.6282	0.0477	2753.47	136	910.0%	1	R.DSYWSEEDQELIIPCLALVRASR.A

RCQ4_HUMAN

70.1%

1208

133077

8.1

(O94761) ATP-dependent DNA helicase Q4 (RecQ protein-like 4)

*	TK090902_P14_mitoch_2D_step09.2395.2395.3	1.7809	0.1007	2839.26	85	1300.0%	1	R.TFQAFHSVAFPSCGPCLEQQDEER.S
*	TK090902_P14_mitoch_2D_step13.3362.3362.1	1.9489	0.0986	1471.99	1	5000.0%	1	K.KGECFGGGGATVTTK.E
*	TK090902_P14_mitoch_2D_step04.3193.3193.1	0.9583	0.0104	1351.51	158	3180.0%	1	R.SRQGSVPDYGQR.L

NDKA_MOUSE

70.0%

152

17208

7.4

(P15532) Nucleoside diphosphate kinase A (EC 2.7.4.6) (NDK A) (NDP kinase A) (Tumor metastatic process-associated protein) (Metastasis inhibition factor NM23) (NDPK-A) (nm23-M1)

	TK090902_P14_mitoch_2D_step03.2581.2581.2	1.8992	0.3194	1347.1	1	5000.0%	1	R.TFIAIKPDGVQR.G

RT10_HUMAN

69.8%

9.0%

201

22999

8.0

(P82664) Mitochondrial 28S ribosomal protein S10 (MRP-S10) (MSTP040)

*	TK090902_P14_mitoch_2D_step11.1746.1746.1	0.4672	0.5142	579.83	6	2500.0%	1	K.EESKS.-
*	TK090902_P14_mitoch_2D_step08.2279.2279.1	1.6438	0.166	1476.8	1	2920.0%	1	K.ELGISIKVHEPPR.K

Q8R255

69.8%

295

34216

9.7

(Q8R255) Vomeronasal receptor V1RK1

*	TK090902_P14_mitoch_2D_step14.2455.2455.3	1.6947	0.069	3017.41	18	1570.0%	1	K.SNPVLDLIGGVLSSGYPTVCPYVLLNNR.K
*	TK090902_P14_mitoch_2D_step12.3484.3484.3	1.3425	0.0595	3323.74	55	1200.0%	1	K.KPVDMIFTHLMLVNVLSIMFKLMPDVMR.S
*	TK090902_P14_mitoch_2D_step02.2764.2764.2	1.7641	0.3757	2578.39	1	3250.0%	1	R.DVLFVFLMIWSSLYMVSLLFR.H

RL10_MOUSE

69.7%

213

24473

10.1

(P45634) 60S ribosomal protein L10 (QM protein homolog)

	TK090902_P14_mitoch_2D_step06.2085.2085.1	1.4682	0.2137	1189.98	1	5000.0%	1	R.GAFGKPQGTVAR.V

Q8R3A8

69.2%

521

59742

7.3

(Q8R3A8) Hypothetical 59.7 kDa protein (Fragment)

*	TK090902_P14_mitoch_2D_step05.3025.3025.1	1.8133	0.1716	1199.51	6	4440.0%	2	-.RSMDFIGMIK.E

Q99LN8

69.0%

335

36301

6.2

(Q99LN8) Similar to hypothetical protein FLJ20411

*	TK090902_P14_mitoch_2D_step05.4645.4645.2	1.1141	0.1415	2879.55	37	1540.0%	2	R.LITGAVNPTVLYVSGGNTQVISYSEHR.Y
	TK090902_P14_mitoch_2D_step09.1823.1823.3	0.9105	0.203	3491.35	84	430.0%	1	R.MLATGECTPEDLCFSLQETVFAMLVEITER.A

NME4_MOUSE

68.9%

1323

142908

8.3

(Q03391) Glutamate [NMDA] receptor subunit epsilon 4 precursor (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D)

*	TK090902_P14_mitoch_2D_step07.2175.2175.2	2.1135	0.2713	1683.49	2	3530.0%	1	R.AKGTGPPGGAALADGFHR.Y
	TK090902_P14_mitoch_2D_step05.3052.3052.2	1.4934	0.0538	2282.12	5	2500.0%	1	R.SEIVDFSVPFVETGISVMVAR.S
	TK090902_P14_mitoch_2D_step06.4521.4521.2	0.8812	0.0935	2831.45	7	1880.0%	1	R.SLVLQLCDLLSGLRVHGVVFEDDSR.A
*	TK090902_P14_mitoch_2D_step12.2844.2844.3	1.4305	0.1874	2832.32	1	2210.0%	1	R.GAAGRPLSPPTTQPPQKPPPSYFAIVR.E

CYPH_MOUSE

68.8%

16.6%

163

17840

7.9

(P17742) Peptidyl-prolyl cis-trans isomerase A (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin A) (Cyclosporin A-binding protein) (SP18)

	TK090902_P14_mitoch_2D_step06.3346.3346.2	1.8615	0.1263	2795.09	1	2500.0%	3	K.HTGPGILSMANAGPNTNGSQFFICTAK.T

O95790

68.8%

1352

152545

6.1

(O95790) Neuroblastoma-amplified protein

	TK090902_P14_mitoch_2D_step14.1124.1124.2	1.0434	0.0037	1912.67	16	2650.0%	1	R.LHPGDLITVVDAVTFSPK.A
	TK090902_P14_mitoch_2D_step04.4773.4773.2	0.8215	0.0184	2880.37	99	960.0%	1	K.AVQEDEVGVPGSNSADLLRWTTATTMK.V
*	TK090902_P14_mitoch_2D_step04.5069.5069.3	0.9561	0.0147	3929.67	5	1000.0%	1	K.EKLHDEAVAICLDGQPLAMIQQLLEVAVGLLNISTK.D
	TK090902_P14_mitoch_2D_step04.4134.4134.2	2.2922	0.1049	2681.99	1	2950.0%	1	K.ELCLLLLNQSLLLPSLKLLLESR.D
	TK090902_P14_mitoch_2D_step08.4619.4619.3	1.0513	0.0221	4553.06	7	980.0%	1	K.NKGEVFPTTEVLLQLASEALPNDMTLALAYLLALPQVLDANR.C
	TK090902_P14_mitoch_2D_step07.2471.2471.1	1.2007	0.076	973.42	89	3750.0%	1	K.QMLPAEGVK.E

O54893

68.6%

1171

127523

6.2

(O54893) Putative membrane-associated guanylate kinase 1

	TK090902_P14_mitoch_2D_step05.3032.3032.1	1.5366	0.1719	1270.92	1	5000.0%	3	R.YDVLGVIDSCK.E
	TK090902_P14_mitoch_2D_step04.1721.1721.1	1.0556	0.0275	889.28	3	4290.0%	1	R.KVVFAVPK.A
	TK090902_P14_mitoch_2D_step06.2092.2092.2	1.3011	0.0831	2505.45	50	1670.0%	1	R.SMYENRLPDYQEQDIFLWR.K

HBD_HUMAN

68.6%

146

15924

8.0

(P02042) Hemoglobin delta chain

*	TK090902_P14_mitoch_2D_step06.3280.3280.2	1.8594	0.3136	2631.67	1	2860.0%	1	K.GTFSQLSELHCDKLHVDPENFR.L

PSB6_MOUSE

68.3%

238

25425

5.1

(Q60692) Proteasome subunit beta type 6 precursor (EC 3.4.25.1) (Proteasome delta chain) (Macropain delta chain) (Multicatalytic endopeptidase complex delta chain) (Proteasome subunit Y)

	TK090902_P14_mitoch_2D_step06.3510.3510.3	1.9216	0.2114	3311.49	3	1920.0%	4	R.EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVR.Q

Q9BZF6

68.1%

15.6%

507

55328

6.5

(Q9BZF6) Zinc transporter 1

*	TK090902_P14_mitoch_2D_step14.2929.2929.2	1.9822	0.3061	1941.23	1	4060.0%	1	K.ESALILLQTVPKQIDIR.N
*	TK090902_P14_mitoch_2D_step06.4074.4074.3	1.6383	0.0345	2937.75	1	2020.0%	1	R.AEVMGALVNAIFLTGLCFAILLEAIER.F
*	TK090902_P14_mitoch_2D_step03.4053.4053.3	1.4522	0.095	3820.33	22	1100.0%	1	R.AGQLNMRGVFLHVLGDALGSVIVVVNALVFYFSWK.G

Q9CZJ2

68.0%

685

76119

8.5

(Q9CZJ2) 2700081N06Rik protein (RIKEN cDNA 2700081N06 gene)

	TK090902_P14_mitoch_2D_step06.2088.2088.1	1.4092	0.0152	1408.94	4	3750.0%	2	R.KWEGGDPGVAHQK.T
*	TK090902_P14_mitoch_2D_step13.1416.1416.1	1.7594	0.1309	1146.4	1	6670.0%	3	R.FVPGHHPPEK.L
	TK090902_P14_mitoch_2D_step06.3400.3400.2	0.7099	0.0181	2179.99	121	1000.0%	1	K.ASGGPYGAVGVDLAFEQLLCR.I
	TK090902_P14_mitoch_2D_step06.1822.1822.1	1.1094	0.0488	1347.44	19	4000.0%	1	R.RSYCPARPGQR.R

Q9D5T8

67.9%

400

46856

6.8

(Q9D5T8) 4921522E24Rik protein

*	TK090902_P14_mitoch_2D_step06.3966.3966.2	1.3274	0.0347	1915.08	5	3670.0%	1	R.RNILILQLLLLLLPLR.Q
*	TK090902_P14_mitoch_2D_step07.3701.3701.3	1.0664	0.0202	3288.41	147	1070.0%	1	K.VGFFTSDHATQTDCSEVFPLKDLTQSTEK.L
*	TK090902_P14_mitoch_2D_step07.2135.2135.1	1.954	0.0298	889.23	4	7500.0%	1	K.EKEEIIK.N

Q9DC45

67.9%

814

93587

5.3

(Q9DC45) 1200003J11Rik protein

*	TK090902_P14_mitoch_2D_step03.2480.2480.1	1.0411	0.0994	823.86	35	5000.0%	1	K.YAEELAK.M
	TK090902_P14_mitoch_2D_step07.2135.2135.1	1.954	0.0298	889.23	4	7500.0%	1	K.EKEELLK.L
*	TK090902_P14_mitoch_2D_step13.3113.3113.2	0.7537	0.0756	1974.38	209	1560.0%	1	K.AEEQVQATRPELIFLTK.E

Q91Z10

67.8%

640

70494

7.2

(Q91Z10) Similar to phosphoenolpyruvate carboxykinase 2 (Mitochondrial)

	TK090902_P14_mitoch_2D_step11.2023.2023.1	1.1121	0.0301	1067.8	79	4380.0%	1	K.EPCAHPNSR.F
*	TK090902_P14_mitoch_2D_step01.1970.1970.1	1.7278	0.1457	1507.7	1	5000.0%	1	R.GYLTEQVNQDLPK.E
*	TK090902_P14_mitoch_2D_step09.2829.2829.2	0.7122	0.0871	2812.41	131	1000.0%	1	R.YVAAAFPSACGKTNLAMMRPALPGWK.V

DGK_MOUSE

67.7%

26.0%

277

32223

8.1

(Q9QX60) Deoxyguanosine kinase, mitochondrial precursor (EC 2.7.1.113) (dGK)

*	TK090902_P14_mitoch_2D_step04.3514.3514.2	1.7863	0.3317	2746.48	1	3330.0%	1	K.THPEWQVATEPIAAWQNIQAAGAQK.D
*	TK090902_P14_mitoch_2D_step11.3399.3399.2	1.1855	0.0624	1735.97	3	3330.0%	1	R.LCIEGNIAVGKSTFVK.L
*	TK090902_P14_mitoch_2D_step11.3175.3175.3	1.0531	0.0080	3237.82	11	1030.0%	1	K.THPEWQVATEPIAAWQNIQAAGAQKDGTSK.R
*	TK090902_P14_mitoch_2D_step12.4127.4127.2	1.1083	0.1684	2953.09	1	2000.0%	6	K.LHFEALQHVPVLVLDVTEDFSENAAR.Q

Q96T95

67.7%

885

101545

7.4

(Q96T95) Nuclear body protein SP100C

*	TK090902_P14_mitoch_2D_step12.4917.4917.2	1.2858	0.1647	3012.8	3	2170.0%	1	R.SFHEHCHIPSVEANKNPWSCIFCR.I
*	TK090902_P14_mitoch_2D_step05.2961.2961.1	1.5196	0.189	1116.93	1	6250.0%	1	R.QMLPEEQLK.C

Q9EP56

67.6%

248

27812

5.0

(Q9EP56) Lysosomal thiol reductase precursor

	TK090902_P14_mitoch_2D_step06.3582.3582.2	1.7801	0.3331	2766.44	1	2500.0%	3	K.KLGPCLQVYAPEVSPESIMECATGK.R

SPI2_MOUSE

67.4%

14.1%

405

45776

6.1

(Q9JK88) Serpin I2 precursor (Serine protease inhibitor 14)

*	TK090902_P14_mitoch_2D_step05.3960.3960.3	0.9905	0.0356	3840.06	2	1100.0%	1	K.LDLKEALYSLNVTEIFSGGCDLSGITDSSEVYVSR.V
*	TK090902_P14_mitoch_2D_step12.2985.2985.2	1.9828	0.3005	2321.85	1	2860.0%	1	K.NNIIFSPLGTTMLLGMVQLGAK.G

HMG2_MOUSE

67.4%

209

24031

7.3

(P30681) High mobility group protein 2 (HMG-2)

*	TK090902_P14_mitoch_2D_step06.2744.2744.1	1.4635	0.2067	1579.02	3	3210.0%	1	K.IKIEHPGLSIGDTAK.K

DJBB_MOUSE

67.4%

358

40555

6.3

(Q99KV1) DnaJ homolog subfamily B member 11 precursor

*	TK090902_P14_mitoch_2D_step07.2443.2443.3	1.4964	0.0966	3882.46	1	1470.0%	2	R.GDDLYTNVTVSLVEALVGFEMDITHLDGHKVHISR.D
	TK090902_P14_mitoch_2D_step04.2619.2619.2	1.9057	0.3128	2186.27	1	3330.0%	1	K.LALQLHPDRNPDDPQAQEK.F

ODBA_MOUSE

67.1%

31.4%

442

50371

8.1

(P50136) 2-oxoisovalerate dehydrogenase alpha subunit, mitochondrial precursor (EC 1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase component alpha chain (E1)) (BCKDH E1-alpha)

	TK090902_P14_mitoch_2D_step15.3020.3020.2	0.8181	0.1062	2340.72	1	2380.0%	1	R.NNGYAISTPTSEQYRGDGIAAR.G
*	TK090902_P14_mitoch_2D_step11.3415.3415.3	1.8673	0.0376	3914.42	3	1690.0%	1	R.IVICYFGEGAASEGDAHAGFNFAATLECPIIFFCR.N
	TK090902_P14_mitoch_2D_step07.1884.1884.2	1.6307	0.213	1534.16	1	4230.0%	1	R.IGHHSTSDDSSAYR.S
*	TK090902_P14_mitoch_2D_step07.2580.2580.3	1.302	0.0095	4680.16	2	1250.0%	1	R.QQQQQFPSLDDKPQFPGASAEFVDKLEFIQPNVISGIPIYR.V
	TK090902_P14_mitoch_2D_step11.3430.3430.2	0.8738	0.0847	2598.98	38	1460.0%	1	R.HFVTISSPLATQIPQAVGAAYAAKR.A
	TK090902_P14_mitoch_2D_step13.3236.3236.2	1.7321	0.4368	2728.83	1	2800.0%	2	K.ERHFVTISSPLATQIPQAVGAAYAAK.R

Q8VHI7

67.1%

493

58170

7.0

(Q8VHI7) NYD-SP28 protein

*	TK090902_P14_mitoch_2D_step14.1793.1793.3	1.3804	0.0122	2045.12	67	2350.0%	1	K.SLAKDLTEAEEQYAHALR.S
	TK090902_P14_mitoch_2D_step06.4145.4145.2	1.7966	0.3227	2069.5	1	3120.0%	1	K.EEHNSALNLNKINTQWR.T
*	TK090902_P14_mitoch_2D_step13.1862.1862.2	1.4216	0.1675	1350.22	3	5000.0%	1	R.NNKELVHVQLR.K

Q9NUU2

67.0%

166

17807

11.7

(Q9NUU2) Hypothetical protein FLJ11136

*	TK090902_P14_mitoch_2D_step05.3077.3077.1	1.8366	0.1159	1439.85	2	3670.0%	3	R.RGAASAAAPGALVAVR.A

HXB3_MOUSE

67.0%

433

44353

9.2

(P09026) Homeobox protein Hox-B3 (Hox-2.7) (MH-23)

*	TK090902_P14_mitoch_2D_step13.4112.4112.2	2.044	0.2979	3119.52	1	2070.0%	1	K.LKNSSPGTAEGCGGGGGGGGGGGGGGGGSSGGGGGGGGGGDK.S

Q9DD10

66.8%

248

27520

7.7

(Q9DD10) B430104H02Rik protein

*	TK090902_P14_mitoch_2D_step05.3113.3113.2	1.7395	0.41	2058.12	1	3950.0%	1	K.ATDVMAHVAGFTVAHDVSAR.D

IVD_HUMAN

66.7%

423

46319

8.2

(P26440) Isovaleryl-CoA dehydrogenase, mitochondrial precursor (EC 1.3.99.10) (IVD)

*	TK090902_P14_mitoch_2D_step13.4476.4476.2	1.0946	0.1551	2686.43	2	2080.0%	2	R.LVLAGGPLGLMQAVLDHTIPYLHVR.E

O95712

66.5%

1012

114121

5.8

(O95712) Cytosolic phospholipase A2 beta

*	TK090902_P14_mitoch_2D_step15.4650.4650.2	1.7308	0.3933	2762.72	1	2270.0%	1	R.IAEFFTDLLTWRPLAQATHNFLR.G
*	TK090902_P14_mitoch_2D_step11.2371.2371.2	1.1707	0.0117	2454.8	1	2500.0%	1	R.TPEEAAAGEVNLSSSDSPYHYTK.V
*	TK090902_P14_mitoch_2D_step04.4286.4286.2	0.7865	0.0182	2921.02	58	1040.0%	1	R.LPSKDLVTPSDCYVTLWLPTACSHR.L
*	TK090902_P14_mitoch_2D_step13.3376.3376.2	0.6662	0.0125	2987.02	32	1300.0%	1	R.FHCPACWEQELSIRLQDAPEEQLK.A

Q9NVU2

66.4%

10.7%

505

57785

7.9

(Q9NVU2) Hypothetical protein FLJ10507 (Fragment)

	TK090902_P14_mitoch_2D_step04.4946.4946.3	1.3111	0.2714	3255.7	18	1200.0%	1	K.ECPFLLRDLLSSEELAQVFSQSVMNVLK.V
	TK090902_P14_mitoch_2D_step01.1861.1861.1	1.9368	0.0184	956.23	9	6430.0%	1	K.QMLIHLAK.K
	TK090902_P14_mitoch_2D_step11.4829.4829.2	1.5505	0.077	2005.87	23	2350.0%	1	K.LTSCLERALGDVFLLIGK.E

Q9CXT2

66.4%

188

21052

8.5

(Q9CXT2) 3110007P09Rik protein

*	TK090902_P14_mitoch_2D_step06.2576.2576.2	2.2642	0.0916	2397.29	1	3040.0%	1	K.NAATVDELKASIGNIALSPSPVVK.K

Y008_HUMAN

66.2%

765

85668

8.7

(Q15398) Hypothetical protein KIAA0008

*	TK090902_P14_mitoch_2D_step11.1612.1612.1	0.2806	0.0	601.03	5	1250.0%	1	K.TYSTK.T
*	TK090902_P14_mitoch_2D_step07.1899.1899.1	1.9119	0.0213	759.28	4	8000.0%	4	K.QLQKLK.E
*	TK090902_P14_mitoch_2D_step01.0341.0341.1	1.5748	0.0161	871.49	4	5710.0%	1	K.NLNGLPIK.E
*	TK090902_P14_mitoch_2D_step11.1889.1889.2	1.3318	0.1314	1880.49	4	3000.0%	1	R.NEGRIAQPHHGVPYFR.N

IATP_MOUSE

66.2%

106

12145

9.6

(O35143) ATPase inhibitor, mitochondrial precursor

*	TK090902_P14_mitoch_2D_step07.1899.1899.1	1.9119	0.0213	759.28	4	8000.0%	4	K.KIQQLK.N

Q9WVQ0

66.2%

0.6%

1022

119400

6.6

(Q9WVQ0) Sperm tail associated protein

	TK090902_P14_mitoch_2D_step07.1899.1899.1	1.9119	0.0213	759.28	4	8000.0%	4	R.QLQQLK.K

A1BG_HUMAN

66.1%

101

474

51941

6.0

(P04217) Alpha-1B-glycoprotein

*	TK090902_P14_mitoch_2D_step12.2815.2815.3	1.479	0.0872	4336.15	2	1220.0%	1	R.LHDNQNGWSGDSAPVELILSDETLPAPEFSPEPESGRALR.L
*	TK090902_P14_mitoch_2D_step05.4200.4200.2	1.8239	0.3095	2898.27	1	2200.0%	10	R.LETPDFQLFKNGVAQEPVHLDSPAIK.H

Q9CQR6

66.0%

305

35159

5.7

(Q9CQR6) 2310003C10Rik protein (Similar to protein phosphatase 6, catalytic subunit)

	TK090902_P14_mitoch_2D_step09.2763.2763.2	1.0382	0.1284	1726.57	4	2690.0%	1	K.LICRAHQLVHEGYK.F
	TK090902_P14_mitoch_2D_step08.2151.2151.1	1.4074	0.2761	1181.94	1	5560.0%	1	R.AHQLVHEGYK.F

SM4F_MOUSE

65.8%

777

84502

6.9

(Q9Z123) Semaphorin 4F precursor (Semaphorin W) (Sema W)

*	TK090902_P14_mitoch_2D_step04.0695.0695.2	0.6167	0.0045	1555.82	3	1540.0%	1	R.TSLPISEADSYLTR.F
*	TK090902_P14_mitoch_2D_step10.1715.1715.2	0.716	0.0863	881.7	19	3330.0%	1	R.VLDSYER.I
*	TK090902_P14_mitoch_2D_step03.4153.4153.2	0.5993	0.0856	2937.77	223	580.0%	1	R.AVRIGAQLSVLEDLALFPEPQPVESMK.L
*	TK090902_P14_mitoch_2D_step09.4159.4159.2	2.1883	0.2328	2528.55	1	3040.0%	3	K.CPFEPAQRSAAVMAGGVLYTATVK.N

SC31_HUMAN

65.6%

685

78834

6.0

(Q07837) Neutral and basic amino acid transport protein rBAT (B(0,+)-type amino acid transport protein) (NBAT) (D2H)

*	TK090902_P14_mitoch_2D_step13.1833.1833.1	1.5519	0.1695	1127.71	4	6250.0%	1	K.FLLEAKHLR.D

GDE_HUMAN

65.6%

1532

174634

6.8

(P35573) Glycogen debranching enzyme (Glycogen debrancher) [Includes: 4-alpha-glucanotransferase (EC 2.4.1.25) (Oligo-1,4-1,4-glucantransferase); Amylo-alpha-1,6-glucosidase (EC 3.2.1.33) (Amylo-1,6-glucosidase) (Dextrin 6-alpha-D-glucosidase)]

*	TK090902_P14_mitoch_2D_step12.2548.2548.1	1.5504	0.1671	1589.91	1	4330.0%	1	R.DGSAVEIVGLSKSAVR.W
*	TK090902_P14_mitoch_2D_step11.1452.1452.2	0.8744	0.038	959.48	31	3120.0%	1	K.IPFASLASR.L
*	TK090902_P14_mitoch_2D_step08.1860.1860.2	0.6823	0.0687	2236.61	52	1320.0%	1	K.EQCCVSLAAGLPHFSSGIFR.C
*	TK090902_P14_mitoch_2D_step12.4425.4425.2	0.704	0.0271	2883.62	84	870.0%	1	K.NDLGHPFCNNLRSGDWMIDYVSNR.L
*	TK090902_P14_mitoch_2D_step12.4593.4593.2	1.322	0.1458	3012.31	1	2120.0%	1	R.FYTKWNPEALPSNTGEVNFQSGIIAAR.C

O15074

65.6%

1441

159477

6.5

(O15074) Hypothetical protein KIAA0368 (Fragment)

*	TK090902_P14_mitoch_2D_step10.2256.2256.2	0.8606	0.0919	1947.64	102	1670.0%	1	K.EDRFQEFSNIVIPLIK.K
*	TK090902_P14_mitoch_2D_step03.3731.3731.2	0.7241	0.1624	2922.13	64	740.0%	1	R.MCLAHSAGVVPTSQSLADMQDHAPAIGR.Y
*	TK090902_P14_mitoch_2D_step15.4247.4247.2	1.7203	0.3765	3068.91	3	1670.0%	1	R.ELAALFYSVVVSTVSGNELKSMIEQLIK.T
*	TK090902_P14_mitoch_2D_step13.3876.3876.3	1.3339	0.0065	4489.55	1	1310.0%	1	R.NADTLPDQEELIQSATETIGSFLDSTSPLLAIAACTALGEIGR.N
*	TK090902_P14_mitoch_2D_step04.2531.2531.1	1.1814	0.0793	843.87	7	5000.0%	1	K.EVKSHLK.E
*	TK090902_P14_mitoch_2D_step15.4108.4108.2	0.9084	0.0571	2747.95	14	1880.0%	1	K.FASTVFPSDHIPSRYLLLLAAGDPR.E

CYB5_MOUSE

65.6%

32.3%

133

15110

5.1

(P56395) Cytochrome b5

*	TK090902_P14_mitoch_2D_step12.2543.2543.1	1.5407	0.1583	1121.02	2	5620.0%	1	K.STWVILHHK.V
	TK090902_P14_mitoch_2D_step07.2800.2800.3	0.8689	0.1951	3703.62	2	910.0%	1	K.FLEEHPGGEEVLREQAGGDATENFEDVGHSTDAR.E

Q9D6V7

65.4%

175

19157

9.1

(Q9D6V7) 2310050L06Rik protein (RIKEN cDNA 2310050L06 gene)

*	TK090902_P14_mitoch_2D_step13.2212.2212.2	1.7725	0.3243	2232.99	2	3420.0%	1	K.QCEAHLGHVFPDGPKPTGQR.F

PVR2_MOUSE

65.3%

25.5%

530

57318

4.9

(P32507) Poliovirus receptor related protein 2 precursor (Murine herpesvirus entry protein B) (mHveB) (Nectin 2) (Poliovirus receptor homolog)

*	TK090902_P14_mitoch_2D_step09.3261.3261.3	1.6082	0.0106	2661.27	7	2080.0%	3	K.DTQEPGIQAGTVTIISRYSLVPVGR.A
*	TK090902_P14_mitoch_2D_step10.4687.4687.2	0.8822	0.1855	2714.9	2	2050.0%	2	K.VTCRVEHESFEEPILLPVTLSVR.Y
*	TK090902_P14_mitoch_2D_step11.2482.2482.2	1.8068	0.3085	1913.44	5	2940.0%	1	R.MVNTTFICTATNAVGTGR.A
*	TK090902_P14_mitoch_2D_step10.3421.3421.3	1.3275	0.0175	2842.02	32	1460.0%	1	K.EQRLQAADEEEELEGPPSYKPPTPK.A
*	TK090902_P14_mitoch_2D_step03.3686.3686.3	0.8055	0.1237	4194.68	176	350.0%	1	R.AEQVILVRESPSTAGAGATGGIIGGIIAAIIATAVAGTGILICR.Q

CLUS_MOUSE

65.2%

448

51656

5.7

(Q06890) Clusterin precursor (Sulfated glycoprotein 2) (SGP-2) (Clustrin) (Apolipoprotein J) (Apo-J)

*	TK090902_P14_mitoch_2D_step12.2849.2849.2	1.9927	0.2961	1921.69	1	5000.0%	1	R.ELHDPHYFSPIGFPHK.R
*	TK090902_P14_mitoch_2D_step10.2225.2225.1	0.8287	0.0081	934.99	14	3570.0%	1	R.RNSTGCLK.M

IM7B_MOUSE

65.0%

34.3%

172

18352

9.0

(Q9Z0V7) Mitochondrial import inner membrane translocase subunit TIM17 B

	TK090902_P14_mitoch_2D_step09.3467.3467.3	2.9354	0.0734	3139.02	1	2140.0%	1	R.EPCPWRIVDDCGGAFTMGVIGGGVFQAIK.G
*	TK090902_P14_mitoch_2D_step09.1900.1900.3	0.9349	0.0203	3346.93	4	1210.0%	1	R.NAPPFLEDPSQLTPKEGSPAPGYPNYQQYH.-

Q9CWJ1

64.8%

15.2%

283

29769

5.0

(Q9CWJ1) 2410043M02Rik protein

*	TK090902_P14_mitoch_2D_step05.4043.4043.3	1.7022	0.0068	2754.11	9	2100.0%	1	K.TLELREASVTPSNLWGGQGLLGVSIR.F
	TK090902_P14_mitoch_2D_step12.2833.2833.2	1.9425	0.2993	1783.14	1	4060.0%	1	K.KISLPGQMTGTPITPLK.D

Q9H8U9

64.7%

478

57191

10.8

(Q9H8U9) Hypothetical protein FLJ13213

*	TK090902_P14_mitoch_2D_step06.2001.2001.1	1.8944	0.1041	1426.97	8	3330.0%	1	R.EAGPNPSRPTSWK.S

PKP4_HUMAN

64.6%

16.3%

1211

134269

9.0

(Q99569) Plakophilin 4 (p0071)

*	TK090902_P14_mitoch_2D_step14.3222.3222.2	1.1566	0.0304	2830.26	18	1600.0%	1	R.STDVPNTGVSKPRVSDAVQPNNYLIR.T
*	TK090902_P14_mitoch_2D_step13.3641.3641.2	1.1314	0.0363	2842.39	131	1200.0%	1	K.GLYPGSSKPSPIYISSYSSPAREQNR.R
*	TK090902_P14_mitoch_2D_step13.3228.3228.3	1.3426	0.0548	3213.71	62	1340.0%	1	R.DALSTLTNTVIVPHSGWNNSSFDDDHKIK.F
*	TK090902_P14_mitoch_2D_step02.4395.4395.3	0.8883	0.0188	4264.77	6	920.0%	2	R.TQPPMQYYNSQGDATHKGLYPGSSKPSPIYISSYSSPAR.E
*	TK090902_P14_mitoch_2D_step10.4485.4485.3	0.9822	0.0549	4587.29	166	710.0%	1	K.GVEMLWHPSVVKPYLTLLAESSNPATLEGSAGSLQNLSASNWK.F
*	TK090902_P14_mitoch_2D_step12.2760.2760.2	1.7374	0.3594	1897.56	4	3930.0%	1	R.LQHQQLYYSQDDSNR.K
*	TK090902_P14_mitoch_2D_step09.3317.3317.1	0.9164	0.0138	1253.26	10	3890.0%	1	K.TVENCVCTLR.N
*	TK090902_P14_mitoch_2D_step08.3907.3907.3	1.3143	0.076	3396.89	23	1250.0%	1	R.SSTQMNSYSDSGYQEAGSFHNSQNVSKADNR.Q

Q9CYR8

64.6%

253

29230

8.6

(Q9CYR8) 2810471M23Rik protein

	TK090902_P14_mitoch_2D_step03.2084.2084.1	0.7305	0.0045	858.5	41	2500.0%	2	K.TYVFKAK.D
*	TK090902_P14_mitoch_2D_step11.2945.2945.2	1.0369	0.1022	2244.64	49	1670.0%	1	K.NAEEWLQCINVALAQAKER.E
*	TK090902_P14_mitoch_2D_step01.2046.2046.2	1.7284	0.3598	1964.71	1	4060.0%	1	K.THYFTLAGNQLLFQKGK.S

O75136

64.2%

1207

126967

4.5

(O75136) Hypothetical protein KIAA0641

*	TK090902_P14_mitoch_2D_step04.2966.2966.1	1.6794	0.1455	1573.78	1	3460.0%	1	R.VAESMAPDPRTLQR.M
*	TK090902_P14_mitoch_2D_step02.4033.4033.1	0.9578	0.0229	1443.15	111	3000.0%	1	-.MQFLEEVQPYR.A
*	TK090902_P14_mitoch_2D_step13.3638.3638.3	1.2484	0.1118	4122.52	3	1140.0%	1	K.SGNVWSLGVTIWELFELGTQPYPQHSDQQVLAYTVR.E

O14631

64.1%

1240

134027

6.5

(O14631) CDO

*	TK090902_P14_mitoch_2D_step11.2665.2665.3	1.8523	0.1228	2290.81	12	2140.0%	2	K.VADGDFVTLSCNASGLPVPVIR.W
*	TK090902_P14_mitoch_2D_step07.2732.2732.2	1.9221	0.289	2242.1	1	2750.0%	1	K.YPVVSEAANNNFGVVLTDSSR.H
*	TK090902_P14_mitoch_2D_step14.3712.3712.2	1.3578	0.0271	2214.53	10	2220.0%	1	R.WYDSHGLITSHPSQVLRSK.S

Q9NSV0

64.1%

439

49166

10.3

(Q9NSV0) Hypothetical protein

*	TK090902_P14_mitoch_2D_step13.2677.2677.2	1.7257	0.3546	2040.46	1	3420.0%	1	R.CSATPSAQVKPIVSASPPSR.A
*	TK090902_P14_mitoch_2D_step11.3397.3397.2	1.0302	0.162	2873.41	8	1820.0%	1	-.MIEVIMPGVTIYELLFLFLWKWK.G

Q9CQG8

63.4%

561

62834

7.5

(Q9CQG8) 4921513O20Rik protein

*	TK090902_P14_mitoch_2D_step08.3539.3539.2	0.8177	0.1744	2206.22	32	1390.0%	1	R.IMEGLRFPNEFDELAIQGK.L
*	TK090902_P14_mitoch_2D_step06.2957.2957.2	2.2175	0.1159	1920.5	10	3670.0%	1	K.IADYGIAQYCCRMGIK.T
*	TK090902_P14_mitoch_2D_step01.2918.2918.1	0.9435	0.0672	1573.07	17	1430.0%	1	K.TSEGTPGFRAPEVAR.G

Q8VC40

63.3%

1.7%

750

82874

7.7

(Q8VC40) Hypothetical 82.9 kDa protein

	TK090902_P14_mitoch_2D_step03.2213.2213.1	0.6461	0.1356	695.36	9	4000.0%	1	K.KESSNK.E
	TK090902_P14_mitoch_2D_step07.1975.1975.1	1.7507	0.0865	805.62	4	6670.0%	3	R.QTITLTK.F

GCST_HUMAN

63.2%

403

43946

8.6

(P48728) Aminomethyltransferase, mitochondrial precursor (EC 2.1.2.10) (Glycine cleavage system T protein) (GCVT)

*	TK090902_P14_mitoch_2D_step07.2860.2860.1	1.3806	0.3314	1456.05	1	4580.0%	1	R.TPLYDFHLAHGGK.M

Z174_HUMAN

63.0%

407

46455

9.6

(Q15697) Zinc finger protein 174 (AW-1)

*	TK090902_P14_mitoch_2D_step13.2216.2216.2	2.0656	0.2717	1744.32	1	4290.0%	1	R.SLSNRLQHLGHQPTR.S

FBL1_HUMAN

63.0%

703

77275

5.3

(P23142) Fibulin-1 precursor

*	TK090902_P14_mitoch_2D_step13.4684.4684.3	1.7494	0.032	3103.21	8	1760.0%	1	R.QVRPIVGPFHAVLKLEMNYVVGGVVSHR.N
	TK090902_P14_mitoch_2D_step10.2731.2731.2	1.541	0.1409	1926.41	3	3120.0%	4	R.DSSCGTGYELTEDNSCK.D

RB6A_MOUSE

62.8%

208

23590

5.5

(P35279) Ras-related protein Rab-6A

	TK090902_P14_mitoch_2D_step04.3363.3363.1	1.4058	0.2875	1246.77	1	5000.0%	1	R.GSDVIIMLVGNK.T

143G_HUMAN

62.8%

4.1%

246

28171

4.9

(P35214) 14-3-3 protein gamma (Protein kinase C inhibitor protein-1) (KCIP-1) (P35214) 14-3-3 protein gamma (Protein kinase C inhibitor protein-1) (KCIP-1)

	TK090902_P14_mitoch_2D_step09.2141.2141.2	1.1455	0.1348	1248.8	1	5560.0%	2	K.EHMQPTHPIR.L

SY20_HUMAN

62.7%

38.5%

10762

8.9

(P78556) Small inducible cytokine A20 precursor (CCL20) (Macrophage inflammatory protein 3 alpha) (MIP-3-alpha) (Liver and activation-regulated chemokine) (CC chemokine LARC) (Beta chemokine exodus-1)

*	TK090902_P14_mitoch_2D_step01.0402.0402.1	1.3109	0.0583	994.4	63	3570.0%	6	K.YIVRLLSK.K
*	TK090902_P14_mitoch_2D_step10.1852.1852.1	0.8767	0.0688	607.99	5	5000.0%	2	R.ILHPK.F
*	TK090902_P14_mitoch_2D_step06.4165.4165.2	1.569	0.0984	2768.68	5	1960.0%	1	K.FIVGFTRQLANEGCDINAIIFHTK.K

KPCT_MOUSE

62.4%

707

81573

7.7

(Q02111) Protein kinase C, theta type (EC 2.7.1.-) (nPKC-theta)

	TK090902_P14_mitoch_2D_step01.2387.2387.1	1.4118	0.0175	1017.97	18	5000.0%	2	R.VMQIIVKGK.N

Q8R2M8

62.4%

625

68081

7.4

(Q8R2M8) Similar to hypothetical protein FLJ20244

*	TK090902_P14_mitoch_2D_step04.2185.2185.1	1.4218	0.2262	1079.93	1	5710.0%	1	R.MLMYQHQK.A
*	TK090902_P14_mitoch_2D_step11.2039.2039.1	0.7934	0.0656	1179.73	51	4000.0%	1	R.IHLGAKGIQIK.V

Q9D111

62.2%

17.7%

147

16185

8.4

(Q9D111) 3110050F08Rik protein

	TK090902_P14_mitoch_2D_step06.3349.3349.2	1.8078	0.2901	3041.03	1	2800.0%	3	R.DLGPHHFNVLAFPCNQFGQQEPDTNR.E

Q921X9

61.9%

517

59267

7.5

(Q921X9) Similar to for protein disulfide isomerase-related

*	TK090902_P14_mitoch_2D_step07.3503.3503.2	1.7346	0.332	2909.69	1	3120.0%	1	R.GHIVLAGMNVYPSEFENIKEEYNVR.G
	TK090902_P14_mitoch_2D_step01.1507.1507.1	1.1018	0.1336	1030.73	36	5560.0%	1	K.LLSTVAQAVK.G

GSN2_MOUSE

61.6%

308

36090

9.6

(Q9CY27) Synaptic glycoprotein SC2

	TK090902_P14_mitoch_2D_step09.2556.2556.1	1.5145	0.1613	1205.17	3	5620.0%	1	-.MKHYEVEIR.D

Q9BQV1

61.4%

103

10942

8.9

(Q9BQV1) Hypotetical protein

*	TK090902_P14_mitoch_2D_step10.2639.2639.2	1.9187	0.2825	1761.86	2	3820.0%	1	K.APSSDSAGIQVNSGRLAK.D

Q99NH2

61.2%

1333

149060

7.8

(Q99NH2) PAR-3 180 kDa isoform

	TK090902_P14_mitoch_2D_step04.3341.3341.2	1.2037	8.0E-4	2396.91	61	1900.0%	1	R.LEHGDGGILDLDDILCDVADDK.D
	TK090902_P14_mitoch_2D_step01.4030.4030.1	1.457	0.1845	1263.14	1	5000.0%	1	K.VFSLIQQAVTR.Y

BP28_HUMAN

61.1%

0.9%

2144

242355

6.6

(Q9H583) Protein BAP28

*	TK090902_P14_mitoch_2D_step13.1728.1728.1	1.847	0.0474	941.47	4	6430.0%	1	R.IELEPPDK.A
*	TK090902_P14_mitoch_2D_step13.1130.1130.1	1.0386	0.0764	1363.85	1	3640.0%	1	K.EETIPKAVSFNK.S

ODB2_MOUSE

61.1%

482

53160

8.7

(P53395) Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial precursor (EC 2.3.1.-) (E2) (Dihydrolipoamide branched chain transacylase) (BCKAD E2 subunit)

	TK090902_P14_mitoch_2D_step08.2674.2674.1	1.8457	0.0296	1090.15	2	6250.0%	1	R.RLAMENNIK.L
*	TK090902_P14_mitoch_2D_step10.3005.3005.2	1.2036	0.2961	1602.51	63	2140.0%	1	R.TFPTPIAKPPVFTGK.D
*	TK090902_P14_mitoch_2D_step07.2655.2655.1	1.3675	0.0746	1396.22	14	4090.0%	1	K.LREELKPVALAR.G

Q9Z247

61.1%

570

62996

5.2

(Q9Z247) FK506 binding protein 9 precursor (EC 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase) (PPIase) (Rotamase) (FKBP65RS)

*	TK090902_P14_mitoch_2D_step14.4441.4441.2	0.8734	0.1627	3100.18	14	1540.0%	1	R.SQSGDFLRYHYNGTLLDGTLFDSSYSR.N
	TK090902_P14_mitoch_2D_step12.3843.3843.3	0.911	0.0289	3289.56	2	1200.0%	1	R.TIQVSDFVRYHYNGTFLDGTLFDSSHNR.M
*	TK090902_P14_mitoch_2D_step04.2910.2910.1	1.4296	0.2215	1427.72	2	4090.0%	1	R.YHYVGTFLDGQK.F

O35596

61.0%

1002

113377

8.2

(O35596) Transcription factor

*	TK090902_P14_mitoch_2D_step12.2249.2249.1	1.6305	0.1011	1332.01	192	2920.0%	2	K.AGGVGLNLCARSR.V
	TK090902_P14_mitoch_2D_step13.2193.2193.1	1.6569	0.1349	1471.88	2	3640.0%	1	K.EENRNVVLEQLK.K

MPK2_MOUSE

60.9%

401

44436

7.0

(Q63932) Dual specificity mitogen-activated protein kinase kinase 2 (EC 2.7.1.-) (MAP kinase kinase 2) (MAPKK 2) (ERK activator kinase 2) (MAPK/ERK kinase 2) (MEK2)

*	TK090902_P14_mitoch_2D_step12.3021.3021.2	1.5551	0.0879	1656.93	2	4230.0%	3	R.SEGEEVDFAGWLCR.T

FUS_MOUSE

60.8%

518

52673

9.4

(P56959) RNA-binding protein FUS (Pigpen protein)

	TK090902_P14_mitoch_2D_step08.2016.2016.2	1.739	0.3239	2254.69	1	3040.0%	1	K.APKPDGPGGGPGGSHMGGNYGDDR.R
*	TK090902_P14_mitoch_2D_step04.4827.4827.1	0.872	0.0701	1572.04	14	2330.0%	1	R.GGGGGYNRSSGGYEPR.G

PMC2_HUMAN

60.7%

885

100831

8.5

(Q01780) Polymyositis/scleroderma autoantigen 2 (Autoantigen PM/Scl 2) (Polymyositis/scleroderma autoantigen 100 kDa) (PM/Scl-100) (P100 polymyositis-scleroderma overlap syndrome associated autoantigen)

	TK090902_P14_mitoch_2D_step13.1368.1368.3	2.2107	0.24	2456.05	8	2240.0%	2	R.LEMWERGNGQPVQLQVVWQR.S
*	TK090902_P14_mitoch_2D_step08.4035.4035.3	2.0104	0.0311	2982.56	12	1610.0%	1	K.SDGEMVLPGFPDADSFVKFALGSVVAVTK.A
*	TK090902_P14_mitoch_2D_step06.3378.3378.2	1.6972	0.3702	3122.02	2	2220.0%	1	K.IDNSNTPFLPKIFIKPNAQKPLPQALSK.E

Q9CR59

60.6%

222

25820

10.3

(Q9CR59) 2310040G17Rik protein

*	TK090902_P14_mitoch_2D_step15.2222.2222.2	1.2747	0.0366	1940.97	5	2500.0%	1	R.RRPGPHSPDPENLLTPR.W
*	TK090902_P14_mitoch_2D_step14.2226.2226.2	1.8201	0.286	1784.65	1	4670.0%	1	R.RPGPHSPDPENLLTPR.W

Q9UHF3

60.5%

227

25366

9.3

(Q9UHF3) Putative N-acetyltransferase Camello 2

*	TK090902_P14_mitoch_2D_step13.3094.3094.2	1.8279	0.2752	1519.87	3	4550.0%	2	K.KPWTRYVDIALR.T

Q8VES6

60.5%

18.0%

316

35187

7.3

(Q8VES6) Olfactory receptor MOR265-1

*	TK090902_P14_mitoch_2D_step15.2636.2636.3	2.8734	0.1187	2580.25	2	2390.0%	1	K.VTALMYTVVTPALNPVIYTLRNK.E
*	TK090902_P14_mitoch_2D_step03.3763.3763.3	1.0459	0.0028	4054.28	21	1210.0%	1	K.LACVDTSQNEMVIFIISLIFIMSPCLFILCSYVR.I

Q9CXM7

60.4%

216

25457

9.5

(Q9CXM7) 3110056M06Rik protein

	TK090902_P14_mitoch_2D_step07.2181.2181.1	1.3496	0.3775	1195.96	1	4440.0%	1	R.AHGELHEQFK.R

Q9DB32

60.2%

283

31490

5.6

(Q9DB32) 1500017E18Rik protein

*	TK090902_P14_mitoch_2D_step09.2332.2332.1	1.2965	0.0975	1495.97	1	3330.0%	3	R.FQPAVEPPQPQVR.A
*	TK090902_P14_mitoch_2D_step13.2394.2394.2	1.0556	0.1288	1822.73	1	3000.0%	1	R.RLEHGEGLQFGAIHVR.C

CATB_MOUSE

60.2%

339

37280

5.9

(P10605) Cathepsin B precursor (EC 3.4.22.1) (Cathepsin B1)

*	TK090902_P14_mitoch_2D_step15.2454.2454.3	0.9962	0.0247	4123.23	4	1390.0%	1	R.VNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWSFWTKK.G
*	TK090902_P14_mitoch_2D_step06.2300.2300.1	1.8521	0.1607	1383.74	9	3750.0%	1	K.HEAGDMMGGHAIR.I

Q96SL8

60.1%

496

51994

8.2

(Q96SL8) Hypothetical protein FLJ14768

*	TK090902_P14_mitoch_2D_step13.2153.2153.2	1.701	0.3234	3117.92	1	2240.0%	1	-.MDDVPAPTPAPAPPAAAAPRVPFHCSECGK.S

TRP4_MOUSE

59.8%

974

111575

7.8

(Q9QUQ5) Short transient receptor potential channel 4 (TrpC4) (Receptor-activated cation channel TRP4) (Capacitative calcium entry channel Trp4)

	TK090902_P14_mitoch_2D_step11.3553.3553.3	1.4518	0.0403	2966.96	14	1830.0%	1	R.LISLFTANSHLGPLQISLGRMLLDILK.F
	TK090902_P14_mitoch_2D_step05.2937.2937.1	1.3576	0.3099	1412.84	1	5000.0%	1	R.WYDEFPGWRR.R

DD21_MOUSE

59.5%

851

93582

9.1

(Q9JIK5) Nucleolar RNA helicase II (Nucleolar RNA helicase Gu) (RH II/Gu) (DEAD-box protein 21)

*	TK090902_P14_mitoch_2D_step10.4129.4129.1	1.8168	0.0075	1429.2	2	5380.0%	1	R.SGIDILVGTPGRIK.D

Q96L20

59.5%

419

47232

8.9

(Q96L20) Hypothetical protein

	TK090902_P14_mitoch_2D_step09.1870.1870.2	0.8597	0.01	1667.03	60	2080.0%	1	R.QARCIWFLDTLIK.F
	TK090902_P14_mitoch_2D_step12.3996.3996.1	1.832	0.1829	1259.85	10	4090.0%	1	R.VGNESLNRAVAK.A
*	TK090902_P14_mitoch_2D_step03.2404.2404.1	0.7544	0.0442	1356.77	96	1670.0%	1	R.KVSVAAGSEEDHK.L

Q9NTW4

59.5%

558

61728

9.7

(Q9NTW4) Hypothetical protein

	TK090902_P14_mitoch_2D_step01.1501.1501.1	1.1063	0.1463	1173.97	12	4000.0%	2	K.SSTHNKPSEGK.A
	TK090902_P14_mitoch_2D_step04.3275.3275.1	0.6941	0.047	1082.37	72	2500.0%	1	R.QPHNGFRPK.N

Q924D2

59.5%

1561

169900

7.9

(Q924D2) Myosin light chain kinase (Fragment)

	TK090902_P14_mitoch_2D_step12.1817.1817.1	1.6381	0.1277	1342.35	1	5000.0%	1	R.KVHSPQQVDFR.S
	TK090902_P14_mitoch_2D_step05.4844.4844.2	1.1044	0.1362	3066.92	17	1250.0%	1	K.LGSRQAQVNLTVVDKPDPPAGTPCASDIR.S
*	TK090902_P14_mitoch_2D_step15.3206.3206.3	1.2367	0.1399	4445.83	11	940.0%	1	R.DSGRYSCTASNSLGQVSCSWSLLVDRPNLAQTAPSFSSVLK.D
*	TK090902_P14_mitoch_2D_step02.3379.3379.1	0.9791	0.0747	1478.28	57	2080.0%	1	K.DSVVIEGQDFVLR.C

CIK4_MOUSE

59.4%

654

73474

5.3

(Q61423) Voltage-gated potassium channel protein Kv1.4

	TK090902_P14_mitoch_2D_step07.3873.3873.3	2.8041	0.2221	3006.59	3	2100.0%	1	R.ETENEEQTQLTQNAVSCPYLPSNLLK.K
	TK090902_P14_mitoch_2D_step07.1616.1616.1	0.8967	0.0244	850.28	8	4170.0%	1	R.EDEGFVR.E

RNF9_HUMAN

59.4%

482

55088

6.4

(Q9UDY6) RING finger protein 9 (B30-RING finger protein) (Tripartite motif protein 10)

*	TK090902_P14_mitoch_2D_step04.2691.2691.1	1.6647	0.1195	1585.85	1	3750.0%	1	K.NERPARELLTDIR.S

MTR3_HUMAN

59.1%

205

23661

6.7

(Q13615) Myotubularin-related protein 3 (Fragment)

	TK090902_P14_mitoch_2D_step07.2667.2667.1	1.1608	0.3027	1247.18	1	5000.0%	3	K.WLHHLSVLLK.S

Q96PY5

58.8%

1112

126314

8.2

(Q96PY5) Hypothetical protein KIAA1902 (Fragment)

*	TK090902_P14_mitoch_2D_step03.3367.3367.1	0.8541	0.2367	1194.21	5	2780.0%	1	K.ELQRGMDLTK.R
*	TK090902_P14_mitoch_2D_step02.4361.4361.2	0.6489	0.1504	3051.11	31	800.0%	1	R.MPVFNWVALKPNQINGTVFNEIDDER.I
*	TK090902_P14_mitoch_2D_step11.3015.3015.2	2.1761	0.1388	1971.12	2	3820.0%	1	K.AAAVSLENVLLDVKELQR.G
*	TK090902_P14_mitoch_2D_step08.1842.1842.2	1.4229	0.0331	2224.79	73	1750.0%	1	R.SIEDLHRGSNLPSPVGNSVSR.S

CCAH_MOUSE

58.7%

2365

261944

6.9

(O88427) Voltage-dependent T-type calcium channel alpha-1H subunit (Cav3.1c)

	TK090902_P14_mitoch_2D_step15.2594.2594.3	1.036	0.0201	4775.59	12	1100.0%	1	K.HCLSYLPALSPVYFVTFVLVAQFVLVNVVVAVLMKHLEESNK.E
*	TK090902_P14_mitoch_2D_step13.2544.2544.3	1.7042	0.1407	2612.58	10	2160.0%	1	R.YLSNDSTLASFSEPGSCYEELLK.Y
	TK090902_P14_mitoch_2D_step03.2072.2072.3	1.2004	0.0513	2983.82	37	1350.0%	1	R.SERCSILEAFDDFIFAFFAVEMVIK.M
*	TK090902_P14_mitoch_2D_step07.2037.2037.1	1.65	0.1185	1114.03	1	6000.0%	1	R.ASELEPALGAR.R
*	TK090902_P14_mitoch_2D_step06.4728.4728.3	1.8312	0.2769	4289.22	1	1490.0%	1	R.WNQLDLAIVLLSIMGIALEEIEMNAALPINPTIIRIMR.V

143B_MOUSE

58.3%

245

27955

4.8

(Q9CQV8) 14-3-3 protein beta/alpha (Protein kinase C inhibitor protein-1) (KCIP-1)

	TK090902_P14_mitoch_2D_step01.1409.1409.1	1.5751	0.1322	908.94	2	6430.0%	3	R.NLLSVAYK.N
	TK090902_P14_mitoch_2D_step14.3318.3318.2	1.3807	0.2147	2289.42	1	2630.0%	1	K.QTTVSNSQQAYQEAFEISKK.E

NCB1_HUMAN

58.3%

461

53821

5.2

(Q02818) Nucleobindin 1 precursor (CALNUC)

*	TK090902_P14_mitoch_2D_step05.3849.3849.2	1.7418	0.3008	1938.08	1	5330.0%	1	R.YLQEVIDVLETDGHFR.E

T172_HUMAN

58.3%

1849

206886

6.5

(O14981) TBP-associated factor 172 (TAF-172) (TAF(II)170)

*	TK090902_P14_mitoch_2D_step14.3137.3137.2	1.0302	0.0306	1956.33	44	2060.0%	1	R.SSSREQEAGVLAMDALHR.Q
*	TK090902_P14_mitoch_2D_step09.3199.3199.2	1.7547	0.0218	1913.77	8	3120.0%	2	R.QEPTSESSMEDSPTTER.L
*	TK090902_P14_mitoch_2D_step11.3087.3087.3	1.1156	0.1438	2736.4	9	1850.0%	1	K.LPHLWDAMVGPLRNTIDINNFDGK.S
*	TK090902_P14_mitoch_2D_step05.1852.1852.1	0.6407	0.0229	1025.8	39	3120.0%	1	K.DGMHHTVTK.H
*	TK090902_P14_mitoch_2D_step10.2119.2119.3	1.0481	0.0462	2465.67	116	1670.0%	1	K.CDVDETVSSATLSEETEKPKLK.A
*	TK090902_P14_mitoch_2D_step01.2306.2306.1	1.3851	0.2887	1159.87	6	3890.0%	3	R.TPCPNSKIIK.N
*	TK090902_P14_mitoch_2D_step10.2848.2848.1	0.5036	0.018	1226.79	83	1670.0%	1	R.GIITLYRHQK.A
*	TK090902_P14_mitoch_2D_step15.2935.2935.3	1.6486	0.0080	2804.03	27	1820.0%	1	K.MGDSTLEEMIQQHQEWLEDLVIR.L

Q9DB84

58.0%

316

36753

8.2

(Q9DB84) 1500003P24Rik protein

	TK090902_P14_mitoch_2D_step13.1945.1945.1	1.563	0.1408	772.96	2	8000.0%	1	K.HHLLPR.T

Q91VY1

57.9%

851

94913

6.1

(Q91VY1) Similar to KIAA0195 gene product (Fragment)

	TK090902_P14_mitoch_2D_step08.1962.1962.1	0.9552	0.0389	695.7	7	6250.0%	3	R.VRYQK.R
	TK090902_P14_mitoch_2D_step14.2296.2296.2	1.7033	0.3038	1866.45	2	3440.0%	1	R.APAWFEDFANGLLSAQK.L

Q8TDN5

57.8%

5183

573909

6.0

(Q8TDN5) Retinoblastoma-associated factor 600

*	TK090902_P14_mitoch_2D_step01.1775.1775.1	0.9266	0.1179	1182.08	2	3890.0%	1	K.YDEDHSGDDK.V
	TK090902_P14_mitoch_2D_step09.4108.4108.2	1.2661	0.0033	2447.82	14	2000.0%	1	K.IYDLCVDALSPTFYFLLPSSK.I
*	TK090902_P14_mitoch_2D_step13.1617.1617.3	1.0926	0.0483	2400.29	156	1580.0%	1	K.ETLIQFLRCFLLESNSSSVR.W
*	TK090902_P14_mitoch_2D_step10.4625.4625.2	1.2822	0.2629	2090.0	11	2670.0%	1	K.MQILVERFKPYCNFDK.Y
*	TK090902_P14_mitoch_2D_step06.3984.3984.2	1.1967	0.0444	2293.49	4	2630.0%	1	R.LENPDEACAVSQKHLILLIK.G
*	TK090902_P14_mitoch_2D_step13.3208.3208.3	1.6418	0.163	3661.37	28	1290.0%	1	K.SGSKSSICESSSLISSATAAALLSSGAVDYCLHVLK.S
*	TK090902_P14_mitoch_2D_step12.3901.3901.2	1.1578	0.0235	2044.05	5	2650.0%	1	K.ASAQGDPDVPECLKVWDR.F
*	TK090902_P14_mitoch_2D_step09.4547.4547.3	1.0263	0.0638	4593.26	20	760.0%	1	-.MATSGGEEAAAAAPAPGTPATGADTTPGWEVAVRPLLSASYSAFEMK.E
	TK090902_P14_mitoch_2D_step04.1692.1692.1	0.9784	0.0383	1234.76	3	2500.0%	1	R.QHLAVSHEKGK.I
*	TK090902_P14_mitoch_2D_step15.2631.2631.3	1.4465	0.0191	3868.2	4	1290.0%	1	R.LLALEEATLSTDLQQGYALKSLTGLLSSFVEVESIK.R
	TK090902_P14_mitoch_2D_step01.3334.3334.1	0.9892	0.0050	1560.39	32	3210.0%	1	K.AEHASSLLELASTTK.C
*	TK090902_P14_mitoch_2D_step04.2933.2933.3	1.4615	0.0149	2819.6	7	2080.0%	1	K.SHWANPDLASSLQYEMLLLTDSISK.E
*	TK090902_P14_mitoch_2D_step10.2288.2288.1	1.0549	0.1314	1044.92	12	5000.0%	1	R.RLLVTSQAR.A
*	TK090902_P14_mitoch_2D_step11.3961.3961.2	2.1741	0.1042	3010.72	1	2400.0%	1	K.NKICQDCDLVALLEDDSGMELLVNNK.I

Q9H666

57.8%

496

53254

7.8

(Q9H666) Hypothetical protein FLJ22570

*	TK090902_P14_mitoch_2D_step11.2149.2149.2	1.8153	0.2702	1415.25	1	5330.0%	1	R.DGGLGAAGDRSAGPGR.R
	TK090902_P14_mitoch_2D_step13.1845.1845.2	1.1279	0.0281	1868.68	80	3210.0%	1	K.GTQALYSWPYHFLRK.L

Q14800

57.6%

664

75248

4.8

(Q14800) Hevin-like protein

*	TK090902_P14_mitoch_2D_step08.3734.3734.3	1.8451	0.1874	3850.4	2	1970.0%	6	K.DQEDSDGHLSVNLEYAPTEGTLDIKEDMIEPQEK.K

PESC_HUMAN

57.6%

588

68003

7.3

(O00541) Pescadillo homolog 1

*	TK090902_P14_mitoch_2D_step13.3609.3609.2	1.6796	0.3709	2705.17	1	2000.0%	1	K.AGEGTYALDSESCMEKLAALSASLAR.V

Q9H430

57.4%

1889

215225

6.1

(Q9H430) DJ756N5.1.1 (Continues in Em:AL133324 as dJ1161H23.3 ) (Fragment)

*	TK090902_P14_mitoch_2D_step06.2684.2684.2	2.0163	0.2636	2051.86	1	3680.0%	1	R.DNQSMLITGESGAGKTVNTK.R
	TK090902_P14_mitoch_2D_step11.2879.2879.2	0.7284	0.0046	2884.2	10	930.0%	1	R.EEQAEADGTESADKAAYLMGVSSGDLLK.G
	TK090902_P14_mitoch_2D_step11.4598.4598.2	0.5997	0.0036	2791.2	16	1520.0%	1	K.YQAHFEVVHYAGVVPYSIVGWLEK.N
	TK090902_P14_mitoch_2D_step05.2644.2644.2	1.3282	0.0181	1980.78	3	3670.0%	1	R.LEQQVEDLECSLEQEK.K

Q9Z0H4

57.3%

508

54271

8.8

(Q9Z0H4) Apoptosis-related RNA binding protein (CUG triplet repeat,RNA binding protein 2)

	TK090902_P14_mitoch_2D_step14.4541.4541.2	0.8037	0.0117	2754.21	70	1250.0%	1	K.MNGALDHSDQPDPDAIKMFVGQIPR.S
	TK090902_P14_mitoch_2D_step14.2162.2162.2	2.0107	0.2664	2018.21	1	4120.0%	1	K.TLPGMHHPIQMKPADSEK.S

O35925

57.2%

537

58081

8.3

(O35925) Beta1-syntrophin

*	TK090902_P14_mitoch_2D_step09.3888.3888.2	1.7028	0.2942	2586.73	1	2950.0%	1	R.SIVQGCHNSAELTAEITTACTYR.N

Q9H8F5

57.2%

8.8%

475

55589

6.5

(Q9H8F5) Hypothetical protein FLJ13676

*	TK090902_P14_mitoch_2D_step11.3097.3097.2	0.7802	0.1432	2154.28	65	1670.0%	1	R.WGFTMLSSLVLNFGIQAIR.Q
*	TK090902_P14_mitoch_2D_step06.3264.3264.2	1.7438	0.2928	2475.43	4	2270.0%	3	K.VKATNTQHAVEAISLESVSATCR.Q

ORP1_HUMAN

57.2%

7.4%

950

108470

6.4

(Q9BXW6) Oxysterol binding protein-related protein 1 (OSBP-related protein 1) (ORP-1)

*	TK090902_P14_mitoch_2D_step14.3398.3398.2	1.3323	0.0339	1828.33	40	2500.0%	1	K.ECDMAKEMLPSFLQK.V
*	TK090902_P14_mitoch_2D_step07.3281.3281.2	1.7509	0.2978	1907.01	1	3930.0%	3	R.LFWVVLEHGVLSWYR.K
*	TK090902_P14_mitoch_2D_step15.1539.1539.3	1.2074	0.0202	1911.65	194	1620.0%	1	K.AGAEVNVLNDMGDTPLHR.A
*	TK090902_P14_mitoch_2D_step07.3369.3369.3	1.8736	0.0521	2550.64	2	2380.0%	1	-.MNTEAEQQLLHHARNGNAEEVR.Q

H2AG_HUMAN

57.1%

12.4%

129

13976

10.9

(P20671) Histone H2A.g (H2A/g) (H2A.3) (P20671) Histone H2A.g (H2A/g) (H2A.3)

	TK090902_P14_mitoch_2D_step01.0889.0889.1	1.5428	0.1691	945.84	46	5000.0%	4	R.AGLQFPVGR.V
	TK090902_P14_mitoch_2D_step05.2688.2688.1	1.3507	0.1544	851.74	1	7500.0%	6	R.HLQLAIR.N

Q9QXM1

57.1%

9.0%

983

110586

6.1

(Q9QXM1) P300 transcriptional cofactor JMY

*	TK090902_P14_mitoch_2D_step08.4172.4172.3	1.2026	0.1174	4770.66	97	770.0%	1	K.HKTIESMVELLDLYQMEDEAYSSLAEATTELYQYLLQPFR.D
*	TK090902_P14_mitoch_2D_step09.4143.4143.3	1.1163	0.0364	4633.34	1	1080.0%	1	R.LDQLESDYYDLQLQLYEVQFEILKCEELLLTAQLESIK.R
*	TK090902_P14_mitoch_2D_step05.3125.3125.1	1.4023	0.2223	1267.17	1	5000.0%	1	K.EICIAKHHEK.F

PCCA_HUMAN

57.0%

703

77354

7.1

(P05165) Propionyl-CoA carboxylase alpha chain, mitochondrial precursor (EC 6.4.1.3) (PCCase alpha subunit) (Propanoyl-CoA:carbon dioxide ligase alpha subunit)

*	TK090902_P14_mitoch_2D_step06.3452.3452.3	2.1433	0.0766	2914.74	2	2020.0%	1	R.CLAAEDVVFIGPDTHAIQAMGDKIESK.L
*	TK090902_P14_mitoch_2D_step05.2996.2996.2	1.8701	0.2469	1639.22	2	3850.0%	2	R.LSQYQEPLHLPGVR.V

Q9D7M4

56.8%

507

55793

6.4

(Q9D7M4) Keratin complex 2, basic, gene 18

	TK090902_P14_mitoch_2D_step14.1466.1466.1	0.5995	0.028	1118.41	5	2500.0%	1	K.EQIKCLNSK.F
	TK090902_P14_mitoch_2D_step07.2472.2472.2	2.0803	0.2448	2013.68	4	4060.0%	1	K.MDNSRDLNMDCVVAEIK.A

CA11_MOUSE

56.5%

18.7%

1453

137944

6.1

(P11087) Collagen alpha 1(I) chain precursor

*	TK090902_P14_mitoch_2D_step07.2589.2589.2	1.2035	0.0489	2570.73	8	1720.0%	1	K.GDAGPPGPAGPAGPPGPIGNVGAPGPKGPR.G
	TK090902_P14_mitoch_2D_step13.2368.2368.3	1.9058	0.2326	4364.58	3	1120.0%	1	R.GEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGER.G
*	TK090902_P14_mitoch_2D_step09.4981.4981.3	1.107	0.0252	3218.98	1	1210.0%	1	R.GNNGAPGNDGAKGDTGAPGAPGSQGAPGLQGMPGER.G
*	TK090902_P14_mitoch_2D_step03.4890.4890.2	0.7962	0.1087	2616.62	1	1720.0%	1	R.GAPGDRGEAGPPGPAGFAGPPGADGQPGAK.G
*	TK090902_P14_mitoch_2D_step04.2541.2541.2	0.668	0.022	2381.23	6	1150.0%	1	R.GPSGPQGPSGPPGPKGNSGEPGAPGNK.G
*	TK090902_P14_mitoch_2D_step15.3834.3834.3	1.1149	0.0024	4479.57	4	1090.0%	1	R.GPVGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFASQMSYGYDEK.S
*	TK090902_P14_mitoch_2D_step12.3800.3800.3	0.932	0.0232	3605.09	67	910.0%	2	R.GRPGPPGTAGARGNDGAVGAAGPPGPTGPTGPPGFPGAVGAK.G
*	TK090902_P14_mitoch_2D_step04.2717.2717.1	1.5386	0.1342	1088.77	4	4090.0%	1	K.GADGSPGKDGAR.G

Q8TED7

56.5%

6.7%

164

19232

5.2

(Q8TED7) Hypothetical protein FLJ23614

*	TK090902_P14_mitoch_2D_step08.2580.2580.1	1.5405	0.1285	1250.99	3	4000.0%	1	R.KECGIFVIGPK.E

PTK7_HUMAN

56.5%

1070

118260

7.0

(Q13308) Tyrosine-protein kinase-like 7 precursor (Colon carcinoma kinase-4) (CCK-4)

*	TK090902_P14_mitoch_2D_step04.3719.3719.2	0.805	0.0186	2916.83	3	1540.0%	1	R.RFAQGSSLSFAAVDPLQDSGTFQCVAR.D
*	TK090902_P14_mitoch_2D_step01.2579.2579.1	1.3844	0.2367	1113.03	2	4440.0%	1	K.WIEAGPVVLK.H
*	TK090902_P14_mitoch_2D_step15.2049.2049.3	1.3593	0.0726	4210.61	35	990.0%	1	K.SDVWASGVLMWEVFTHGEMPHGGQADDEVLADLQAGKAR.L
*	TK090902_P14_mitoch_2D_step07.2360.2360.2	0.5795	0.0077	2254.47	72	1250.0%	1	R.SSLQPITTLGKSEFGEVFLAK.A
*	TK090902_P14_mitoch_2D_step11.4595.4595.2	0.8041	0.086	2984.89	40	1000.0%	1	R.TTVYQGHTALLQCEAQGDPKPLIQWK.G

Q9D9J9

56.4%

207

23998

8.5

(Q9D9J9) 1700057K13Rik protein

*	TK090902_P14_mitoch_2D_step04.2293.2293.1	1.7979	0.0425	1380.02	7	4500.0%	1	R.EQLTEKMEEIK.Q

Q9D1I5

56.2%

178

19017

9.1

(Q9D1I5) 1110007A04Rik protein

	TK090902_P14_mitoch_2D_step15.2430.2430.2	1.9693	0.266	1516.28	1	5000.0%	1	K.IGAHGKPVIFLHPK.D

Q96SB3

56.2%

817

89451

5.0

(Q96SB3) Neurabin II protein

*	TK090902_P14_mitoch_2D_step15.1470.1470.2	1.6622	0.4747	2081.95	3	2110.0%	1	R.FDSKPAPSAQPAPPPHPPSR.L
	TK090902_P14_mitoch_2D_step02.3669.3669.2	0.6597	0.0105	3074.13	124	600.0%	1	R.FMIGRERPGEQSEVAQLIQQTLEQER.W
*	TK090902_P14_mitoch_2D_step12.3233.3233.2	1.0117	0.1594	1999.16	9	2370.0%	2	R.VFQPPPPPPPAPSGDAPAEK.E

Q9D647

56.1%

589

68043

6.3

(Q9D647) 4733401D09Rik protein

	TK090902_P14_mitoch_2D_step06.2624.2624.1	1.425	0.1963	1121.75	1	5000.0%	1	K.ELDTFNRVK.L
	TK090902_P14_mitoch_2D_step05.3743.3743.3	1.7302	0.0315	2757.33	9	1880.0%	4	K.GTLDALKDEVASVENELVELQEVEK.R
	TK090902_P14_mitoch_2D_step07.2765.2765.1	0.6687	0.0527	1348.07	5	2500.0%	1	K.KNEEQNQLVDK.M

Q9QXJ5

56.0%

3006

328991

7.4

(Q9QXJ5) MGA protein

*	TK090902_P14_mitoch_2D_step14.4196.4196.2	1.0445	0.2045	3094.6	1	1960.0%	1	-.MEEKQQIILATQDGGTVTGGAPTFFVILK.Q
*	TK090902_P14_mitoch_2D_step05.4475.4475.2	0.9823	0.1923	3076.65	1	1790.0%	1	K.QNSGIIASENTSNNSLDDGGDLLDEETLR.E
*	TK090902_P14_mitoch_2D_step07.2787.2787.3	1.2718	0.029	2378.22	13	1900.0%	1	K.DSGFPHVADVSTMQAAQEFIPK.N
*	TK090902_P14_mitoch_2D_step08.3894.3894.2	0.9172	0.1344	2564.4	22	1740.0%	1	R.IGTQLEGSSASSVDLGQMLMNNRR.G
	TK090902_P14_mitoch_2D_step09.2355.2355.1	1.3722	0.2396	1439.0	2	3640.0%	5	R.YLPRLHLVPAEK.A
	TK090902_P14_mitoch_2D_step08.1799.1799.2	0.8871	0.1386	1326.55	2	5000.0%	1	K.IDYNPFAKGFR.D
*	TK090902_P14_mitoch_2D_step03.1854.1854.3	0.8198	0.0213	2046.05	15	1760.0%	1	K.MDDISPVQTDALDSVRER.L
*	TK090902_P14_mitoch_2D_step03.4162.4162.3	1.0368	0.0802	4174.38	72	460.0%	2	K.VEGEVDPEPVYIPTPSVIEPIKPLVLPQPDLSSTTTKGK.L
*	TK090902_P14_mitoch_2D_step11.2119.2119.1	0.6343	0.014	600.95	195	4000.0%	1	K.QPGNGK.T
*	TK090902_P14_mitoch_2D_step09.2512.2512.2	1.0678	0.0672	2938.26	1	2200.0%	1	K.QDFLGFMNTDSTPEVPPLKPEISESR.I

Q9D4M7

55.7%

887

99919

8.1

(Q9D4M7) 4931400A14Rik protein

*	TK090902_P14_mitoch_2D_step13.1468.1468.1	1.6049	0.1081	1131.04	5	4380.0%	1	K.ETQLRNELK.A
	TK090902_P14_mitoch_2D_step10.2139.2139.1	1.0828	0.0517	1094.02	8	5000.0%	1	K.EDGCFYFR.E

Q8R592

55.5%

819

93309

5.7

(Q8R592) Similar to KIAA0095 gene product

*	TK090902_P14_mitoch_2D_step08.1970.1970.1	0.7972	0.0349	1166.86	4	3890.0%	1	K.SISDMWAMVK.Q
*	TK090902_P14_mitoch_2D_step03.4659.4659.3	1.2492	0.2077	3996.21	3	700.0%	1	K.FVDSTFYLLLDLITFFDEYHSGHIDRAFDIIDR.L
	TK090902_P14_mitoch_2D_step14.3890.3890.3	2.7231	0.2022	2852.75	1	2900.0%	1	R.LESLSAATTFEPLEPVKDTDIQGFLK.N
	TK090902_P14_mitoch_2D_step13.4798.4798.2	1.0134	0.0074	3085.19	7	1800.0%	1	R.NFSDEIRHNLSEVLLATMNILFTQFK.R
	TK090902_P14_mitoch_2D_step01.0082.0082.1	1.3038	0.053	1276.56	152	3000.0%	1	K.NADKVLELMNK.L

DYL1_HUMAN

55.5%

38.2%

10366

7.4

(Q15701) Dynein light chain 1, cytoplasmic (8 kDa dynein light chain) (DLC8) (Protein inhibitor of neuronal nitric oxide synthase) (PIN) (Q15701) Dynein light chain 1, cytoplasmic (8 kDa dynein light chain) (DLC8) (Protein inhibitor of neuronal nitric oxide synthase) (PIN)

	TK090902_P14_mitoch_2D_step03.1941.1941.1	1.4365	0.1733	768.02	2	6670.0%	1	K.DIAAHIK.K
	TK090902_P14_mitoch_2D_step11.1738.1738.3	1.0022	0.0226	3165.15	64	870.0%	1	K.NADMSEEMQQDSVECATQALEKYNIEK.D

DYLL_HUMAN

55.5%

10535

6.9

(Q9Y3P0) Putative dynein light chain protein DJ8B22.1

*	TK090902_P14_mitoch_2D_step03.1941.1941.1	1.4365	0.1733	768.02	2	6670.0%	1	K.DIAAHLK.K

NTC1_MOUSE

55.5%

2531

271313

5.2

(Q01705) Neurogenic locus notch homolog protein 1 precursor (Notch 1) (Motch A) (mT14) (p300)

	TK090902_P14_mitoch_2D_step02.3772.3772.3	1.141	0.2484	4684.21	12	800.0%	1	R.LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK.N
*	TK090902_P14_mitoch_2D_step12.3447.3447.3	0.9741	0.0608	4160.98	1	1050.0%	1	R.QCVQSSSQCFQSATDVAAFLGALASLGSLNIPYKIEAVK.S
*	TK090902_P14_mitoch_2D_step11.2495.2495.3	1.6661	0.0788	2622.42	76	1930.0%	1	R.HGASCQNTNGSYRCLCQAGYTGR.N
	TK090902_P14_mitoch_2D_step03.2370.2370.3	1.4081	0.0172	2069.88	8	2970.0%	1	K.VLLDHFANRDITDHMDR.L
*	TK090902_P14_mitoch_2D_step13.5049.5049.3	1.1314	0.0066	4722.83	13	1030.0%	1	K.DGVATFTCLCQPGYTGHHCETNINECHSQPCRHGGTCQDR.D
*	TK090902_P14_mitoch_2D_step13.1602.1602.3	1.1472	0.023	4240.83	13	1250.0%	1	R.DNSYLCLCLKGTTGPNCEINLDDCASNPCDSGTCLDK.I
*	TK090902_P14_mitoch_2D_step12.4755.4755.3	1.2605	0.0291	3551.12	112	1000.0%	1	K.CDCAPGWSGTNCDINNNECESNPCVNGGTCK.D
*	TK090902_P14_mitoch_2D_step14.4526.4526.2	1.6516	0.3687	2074.05	1	3160.0%	1	R.CEVASGTEACVASGSFVGQR.C

CD4_MOUSE

55.5%

6.1%

457

51297

9.1

(P06332) T-cell surface glycoprotein CD4 precursor (T-cell surface antigen T4/Leu-3) (T-cell differentiation antigen L3T4)

*	TK090902_P14_mitoch_2D_step01.1845.1845.1	0.6882	0.0463	1487.12	44	1540.0%	1	K.GVLIRGGSPSQFDR.F
*	TK090902_P14_mitoch_2D_step01.3342.3342.1	1.5288	0.1282	1562.34	2	4230.0%	1	K.GAWEKGSFPLIINK.L

Q96JT3

55.2%

2277

256973

7.4

(Q96JT3) ATP-binding cassette transporter family A member 12

*	TK090902_P14_mitoch_2D_step07.2097.2097.3	1.6007	0.1767	4322.07	2	1350.0%	1	K.VSGAYLSLLRALDNGMGDLNIGCYGISDTTVEEVFLNLTK.E
*	TK090902_P14_mitoch_2D_step13.3508.3508.2	1.7636	0.2724	2569.84	2	2500.0%	1	K.IGNSNANGISTPDDLSVSSSNFTDR.D

A1A1_HUMAN

55.0%

0.8%

1023

112896

5.5

(P05023) Sodium/potassium-transporting ATPase alpha-1 chain precursor (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1)

*	TK090902_P14_mitoch_2D_step01.0685.0685.1	1.4903	0.1531	1023.72	2	7140.0%	1	K.DRDMDELK.K

RM56_MOUSE

54.9%

551

60706

8.9

(Q9EP89) Mitochondrial 39S ribosomal protein L56 (MRP-L56) (Serine beta lactamase-like protein LACTB)

	TK090902_P14_mitoch_2D_step12.3919.3919.3	2.769	0.1775	3037.66	1	2040.0%	1	R.GIIVSIICNMQSVGLNSTALKIALEFDK.D
*	TK090902_P14_mitoch_2D_step09.3731.3731.2	2.1093	0.1909	3165.92	1	2330.0%	1	R.HYASHTGGAVGASSVLLVLPEELDSEAVNNK.V
*	TK090902_P14_mitoch_2D_step08.2339.2339.2	0.9496	0.0162	1429.27	205	2920.0%	1	K.GTPPPSDQEKELK.E

RAP2_HUMAN

54.7%

183

20615

4.8

(P10114) Ras-related protein RAP-2a

*	TK090902_P14_mitoch_2D_step12.1949.1949.1	1.4791	0.1509	1166.17	1	5000.0%	1	R.QMNYAAQPDK.D

Q99KI8

54.7%

8.6%

567

62823

5.1

(Q99KI8) Similar to KIAA0254 gene product (Fragment)

*	TK090902_P14_mitoch_2D_step12.3556.3556.3	1.0185	0.1082	4292.39	4	1120.0%	1	K.IAPALSIAEAQDKILYCLQEGNSESEVLSMSGMESFIEK.Q
	TK090902_P14_mitoch_2D_step04.3111.3111.1	1.4354	0.1778	1222.87	1	5560.0%	1	K.KPFMVSRIDK.M

RFA1_HUMAN

54.6%

17.4%

616

68138

7.2

(P27694) Replication protein A 70 kDa DNA-binding subunit (RP-A) (RF-A) (Replication factor-A protein 1) (Single-stranded DNA-binding protein)

*	TK090902_P14_mitoch_2D_step05.4491.4491.3	1.3581	0.3472	4737.33	18	770.0%	1	K.NDYEMTFNNETSVMPCEDDHHLPTVQFDFTGIDDLENKSK.D
*	TK090902_P14_mitoch_2D_step11.1927.1927.3	1.4354	0.0198	1447.91	413	2710.0%	1	K.SKDSLVDIIGICK.S
*	TK090902_P14_mitoch_2D_step09.2831.2831.2	1.639	0.4112	1969.5	4	3240.0%	1	K.VVTATLWGEDADKFDGSR.Q
*	TK090902_P14_mitoch_2D_step02.3512.3512.3	1.036	0.2943	4303.39	11	880.0%	1	R.MILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELK.D

GSHR_MOUSE

54.6%

500

53675

8.1

(P47791) Glutathione reductase, mitochondrial precursor (EC 1.6.4.2) (GR) (GRase)

	TK090902_P14_mitoch_2D_step03.1966.1966.1	0.9578	0.0717	867.85	42	4170.0%	1	K.RDAYVSR.L
*	TK090902_P14_mitoch_2D_step03.4826.4826.2	0.685	0.1226	2844.3	47	800.0%	1	K.EEKVVGIHMQGIGCDEMLQGFAVAVK.M
*	TK090902_P14_mitoch_2D_step09.3200.3200.2	1.6406	0.3949	2710.98	1	2500.0%	3	K.SHIEIIHGYATFADGPRPTVEVNGK.K

CYC_HUMAN

54.6%

12.5%

104

11618

9.6

(P00001) Cytochrome c

*	TK090902_P14_mitoch_2D_step15.3422.3422.1	1.4715	0.1486	1470.69	1	3750.0%	1	K.YIPGTKMIFVGIK.K

Q8WZ42

54.5%

34350

3816111

6.3

(Q8WZ42) Titin

	TK090902_P14_mitoch_2D_step15.1680.1680.2	0.6833	0.0456	1351.66	37	2080.0%	1	R.IKAANIVGEGEPR.E
	TK090902_P14_mitoch_2D_step03.2382.2382.1	1.0938	0.0988	1038.42	28	4380.0%	1	R.ELLLPVLIK.E
	TK090902_P14_mitoch_2D_step01.0188.0188.1	0.4445	0.0099	1104.76	72	1250.0%	1	K.TEVEHKVHK.L
	TK090902_P14_mitoch_2D_step15.1729.1729.3	1.3671	0.0586	3212.35	25	1440.0%	1	R.CNTAPHQIPQEEYTATGLEEKAQYQFR.A
	TK090902_P14_mitoch_2D_step12.3692.3692.3	1.1087	0.1816	4392.17	11	1000.0%	1	K.IQEAEGGFIKEDGPMIHTPLVDTVSEEGDIVHLTTSITNAK.E
	TK090902_P14_mitoch_2D_step09.2685.2685.2	1.0078	0.1478	2166.05	22	2000.0%	1	K.VLDRPGPPEGPVQVTGVTSEK.C
	TK090902_P14_mitoch_2D_step14.1736.1736.1	0.8146	0.0013	835.58	82	2860.0%	1	K.KVPAPVPK.K
	TK090902_P14_mitoch_2D_step04.3765.3765.2	1.4145	0.2835	2590.23	5	1900.0%	1	R.CVAFNEHGEIESNVNLQVDERK.K
	TK090902_P14_mitoch_2D_step08.1814.1814.1	0.8078	0.0102	1021.83	54	2220.0%	1	R.VGEAFALTGR.Y
	TK090902_P14_mitoch_2D_step09.1979.1979.2	1.5937	0.2169	2029.93	19	2500.0%	1	K.AVFVNVRVLDTPGPVSDLK.V
	TK090902_P14_mitoch_2D_step07.3896.3896.2	0.8047	0.0892	2150.88	141	1470.0%	1	R.TTEYVVSNLKPGVNYYFR.V
	TK090902_P14_mitoch_2D_step01.1550.1550.1	0.8288	0.1794	1093.11	10	3330.0%	1	K.STHHVVSGLR.E
	TK090902_P14_mitoch_2D_step09.2875.2875.3	1.151	0.0491	2383.41	15	1190.0%	1	K.AGTNVCLDATVFGKPMPTVSWK.K
	TK090902_P14_mitoch_2D_step13.1840.1840.1	1.5317	0.1193	1392.06	4	4170.0%	1	K.EEAPPAKVPEVPK.K
	TK090902_P14_mitoch_2D_step13.1484.1484.1	1.3795	0.0918	825.95	20	5000.0%	1	K.KPVPEKK.V
	TK090902_P14_mitoch_2D_step15.1781.1781.3	0.853	0.0531	4569.13	76	650.0%	1	R.ATAVVEVNVLDKPGPPAAFDITDVTNESCLLTWNPPRDDGGSK.I
	TK090902_P14_mitoch_2D_step11.3038.3038.2	0.7682	0.0138	2533.77	383	1360.0%	1	R.AWTPVTYTVTRQNATVQGLIQGK.A
	TK090902_P14_mitoch_2D_step03.3999.3999.3	1.3904	0.0713	4157.53	7	1280.0%	2	R.ALTINDADDTDAGTYTVTVENANNLECSSCVKVVEVIR.D
	TK090902_P14_mitoch_2D_step03.2871.2871.3	1.0517	0.1687	4347.03	4	790.0%	1	K.LIVEGAVVEFVKELQDIEVPESYSGELECIVSPENIEGK.W
	TK090902_P14_mitoch_2D_step12.2463.2463.2	1.1066	0.0451	2355.73	1	2500.0%	1	K.RAMFECEVSEPDITVQWMK.D
	TK090902_P14_mitoch_2D_step13.3582.3582.2	1.2794	0.0451	2860.64	9	1740.0%	1	K.WVRCNTAPHQIPQEEYTATGLEEK.A
	TK090902_P14_mitoch_2D_step09.1936.1936.3	1.3753	0.0367	1556.55	22	2500.0%	1	K.MSGYPLPKIAWYK.D
	TK090902_P14_mitoch_2D_step01.0052.0052.3	1.2794	0.1159	2806.24	20	1400.0%	1	K.GYVVEVKEAAADEWTTCTPPTGLQGK.Q
	TK090902_P14_mitoch_2D_step13.2228.2228.3	1.0726	0.0147	4291.6	61	990.0%	1	R.VPDAPDQPIVTEVTKDSALVTWNKPHDGGKPITNYILEK.R
	TK090902_P14_mitoch_2D_step06.2861.2861.2	1.1462	0.049	1917.12	31	2330.0%	2	R.EVELLKPIEDVTIYEK.E
	TK090902_P14_mitoch_2D_step12.2459.2459.3	1.3712	0.189	3121.24	191	1120.0%	1	R.VLASNEYGIGLPAETTEPVKVSEPPLPPGR.V
	TK090902_P14_mitoch_2D_step07.4381.4381.2	0.6376	0.0317	2960.15	96	800.0%	1	R.FGVSLTWEPPEYDGGAEITNYVIELR.D
	TK090902_P14_mitoch_2D_step13.3020.3020.2	1.1717	0.0938	2238.78	11	2000.0%	1	K.TISGEIDVNVIARPSAPKELK.F
	TK090902_P14_mitoch_2D_step10.2612.2612.3	1.2467	0.1897	2853.84	2	1770.0%	1	K.DSALVTWNKPHDGGKPITNYILEKR.E
	TK090902_P14_mitoch_2D_step13.5028.5028.2	0.9418	0.0458	2781.91	20	1520.0%	1	K.DINAEEKDTITFEVTVNYEGISYK.W
	TK090902_P14_mitoch_2D_step09.4537.4537.2	0.6556	0.0729	3011.83	30	800.0%	1	R.TYFTNNVATLVFNKVNINDSGEYTCK.A
	TK090902_P14_mitoch_2D_step07.2029.2029.1	0.8913	0.042	1098.98	35	3120.0%	1	R.IFAENRYGK.S
	TK090902_P14_mitoch_2D_step12.2957.2957.2	1.0075	0.0205	2552.14	11	1900.0%	1	K.TLEEEVTVVKGQPLYLSCELNK.E
	TK090902_P14_mitoch_2D_step13.2366.2366.3	1.2608	0.2326	2910.43	65	1600.0%	1	K.DSMTISWHEPLSDGGSPILGYHVERK.E
	TK090902_P14_mitoch_2D_step07.2789.2789.1	0.621	0.0155	1521.76	120	1430.0%	1	R.ATPPTKAVDPIDAPK.V
	TK090902_P14_mitoch_2D_step12.3000.3000.3	1.3542	0.0223	1609.74	5	2860.0%	1	R.VPDAPDQPIVTEVTK.D
	TK090902_P14_mitoch_2D_step07.4621.4621.3	1.0772	0.0957	3831.24	1	1110.0%	1	K.TFSVTVVVIGRPGPVTGPIEVSSVSAESCVLSWGEPK.D
	TK090902_P14_mitoch_2D_step07.4237.4237.2	1.0287	0.2928	2953.93	8	1600.0%	1	K.AESCYLTWDAPLDNGGSEITHYVIDK.R
	TK090902_P14_mitoch_2D_step09.3839.3839.3	1.2284	0.0297	3683.28	14	1360.0%	1	K.AINIAGETSSHAFLLVQAKQLITFTQELQDVVAK.E
	TK090902_P14_mitoch_2D_step13.2361.2361.3	1.4144	0.044	2975.63	86	1630.0%	1	K.IKTADQDLVVDVGKPLTMVVPYDAYPK.A
	TK090902_P14_mitoch_2D_step14.1109.1109.1	0.8875	0.0184	1013.95	56	2140.0%	1	K.RPEEEEPK.V
	TK090902_P14_mitoch_2D_step15.1516.1516.2	0.5057	0.0594	1281.78	57	1670.0%	1	R.IEQEIEMEMK.E
	TK090902_P14_mitoch_2D_step04.1765.1765.2	1.3204	0.1803	1386.55	3	4550.0%	2	R.KAYATITNNCTK.T
	TK090902_P14_mitoch_2D_step10.3437.3437.2	1.2712	0.0672	3180.99	1	1540.0%	1	K.NIEVPETKTASFECEVSHFNVPSMWLK.N
	TK090902_P14_mitoch_2D_step07.1648.1648.1	0.6483	0.0088	614.54	6	2500.0%	1	R.KDHGR.Y
	TK090902_P14_mitoch_2D_step03.4222.4222.3	0.9021	0.0422	4264.73	35	690.0%	1	K.YQFRAMAINAAGIGPPSEPSDPEVAGDPIFPPGPPSCPEVK.D
	TK090902_P14_mitoch_2D_step04.2750.2750.3	1.2346	0.0822	3981.77	29	1110.0%	1	R.QGASKPSRPTEEIQAVDTQEAPEIFLDVKLLAGLTVK.A
	TK090902_P14_mitoch_2D_step12.3935.3935.2	1.5173	0.0442	3040.72	1	2220.0%	1	K.HSITLGWGKPVYDGGAPIIGYVVEMRPK.I
	TK090902_P14_mitoch_2D_step01.1386.1386.1	1.0923	0.0473	1032.34	31	3120.0%	1	K.NVEIKPSDK.H
	TK090902_P14_mitoch_2D_step03.1852.1852.1	1.1901	0.1413	777.83	1	6000.0%	1	K.YIILQK.D
*	TK090902_P14_mitoch_2D_step09.4035.4035.3	1.4311	0.2383	4328.31	8	960.0%	1	K.NDGGMEENMATLMVLEPAVIVEKAGPMTVTVGETCTLECK.V
*	TK090902_P14_mitoch_2D_step08.2704.2704.1	0.9627	0.0408	1551.92	134	1920.0%	1	K.DSCSAHLGVQEPPR.F
	TK090902_P14_mitoch_2D_step11.2630.2630.2	1.3526	0.244	3113.7	9	1480.0%	1	R.FTCSAVNEAGTVSTSCYLAVQVSEEFEK.E
	TK090902_P14_mitoch_2D_step07.1547.1547.3	1.1168	0.0701	1829.33	14	2000.0%	1	K.EPATFVEKLEPSQLLK.K
	TK090902_P14_mitoch_2D_step15.2938.2938.2	1.1936	0.0795	1852.23	5	2860.0%	2	R.FECVLTREANVIWSK.G
	TK090902_P14_mitoch_2D_step02.3828.3828.1	0.6067	0.0162	1497.54	7	2140.0%	1	K.IGTGPPTESKPVIAK.T
	TK090902_P14_mitoch_2D_step13.1553.1553.1	0.8087	0.1426	951.53	15	3570.0%	1	R.EGADYKLR.V
	TK090902_P14_mitoch_2D_step15.1504.1504.1	0.5547	0.0045	866.18	20	2140.0%	1	K.KPEAPPPK.V
	TK090902_P14_mitoch_2D_step09.4711.4711.3	1.066	0.1114	3219.72	24	1020.0%	1	K.MYSDRAMLSWEPPLEDGGSEITNYIVDK.R
	TK090902_P14_mitoch_2D_step08.3254.3254.3	1.4489	0.1102	3570.97	46	1370.0%	1	K.TTLEELLEEDGEEKMAVDISESEAVESGFDLR.I
	TK090902_P14_mitoch_2D_step07.2393.2393.1	1.0997	0.0905	1169.46	5	3500.0%	1	K.EEAAKPKGPIK.G
	TK090902_P14_mitoch_2D_step13.1986.1986.1	1.4469	0.1599	1022.51	2	5000.0%	1	K.EEEVPPPPK.V
	TK090902_P14_mitoch_2D_step15.3547.3547.3	0.6899	0.0346	3749.33	41	550.0%	1	K.IDQLQEGCSYYFRVTAENEYGIGLPAQTADPIK.V
*	TK090902_P14_mitoch_2D_step14.3309.3309.3	1.0216	0.0858	3866.29	54	510.0%	1	R.CNITTTEKSAILEIPSSTVEDAGQYNCYIENASGK.D
	TK090902_P14_mitoch_2D_step09.2949.2949.3	1.218	0.1064	2942.84	6	1350.0%	1	K.YNFRISAINDAGVGEPAVIPDVEIVER.E
	TK090902_P14_mitoch_2D_step11.3545.3545.2	0.9544	0.079	2981.4	53	1200.0%	1	K.DCIFVAWDRPDSDGGSPIIGYLIERK.E
	TK090902_P14_mitoch_2D_step04.1772.1772.1	0.7577	0.0152	1312.37	44	2270.0%	1	R.FGIGPPVETIQR.T
	TK090902_P14_mitoch_2D_step14.1927.1927.3	1.2712	0.0055	3651.12	1	1530.0%	1	K.LPFNTYSIQAGEDLKIEIPVIGRPRPNISWVK.D
	TK090902_P14_mitoch_2D_step07.2524.2524.1	0.9451	0.0449	1517.92	317	2690.0%	1	K.KPEVPPAKVPEVPK.K
	TK090902_P14_mitoch_2D_step13.2538.2538.3	0.884	0.0742	3374.55	1	920.0%	1	K.FGDITKDSVHLTWEPPDDDGGSPLTGYVVEK.R
	TK090902_P14_mitoch_2D_step14.5009.5009.2	1.0303	0.1521	2198.7	6	2500.0%	1	R.VIAKNAAGAISKPSDSTGPITAK.D
	TK090902_P14_mitoch_2D_step14.3580.3580.3	1.403	0.1385	4667.43	8	1250.0%	1	R.MTFIDSVAVIQMNNLSTEDSGDFICEAQNPAGSTSCSTKVIVK.E
	TK090902_P14_mitoch_2D_step09.2281.2281.2	0.7325	0.0066	1609.08	408	1430.0%	1	K.VPVPPPKKPEVPPTK.V
	TK090902_P14_mitoch_2D_step01.0790.0790.1	0.9687	0.0652	1105.45	339	2780.0%	1	R.MSPARMSPAR.M
	TK090902_P14_mitoch_2D_step05.4740.4740.2	0.5009	0.0112	2519.13	110	450.0%	1	K.NDGGSPVTHYIVECLAWDPTGTK.K

RPIA_MOUSE

54.4%

236

26000

6.5

(P47968) Ribose 5-phosphate isomerase (EC 5.3.1.6) (Phosphoriboisomerase)

*	TK090902_P14_mitoch_2D_step13.1521.1521.1	1.3529	0.2886	1435.04	1	3330.0%	1	K.KLASHTAVENHVK.N

SPYA_HUMAN

54.2%

12.0%

392

43010

8.4

(P21549) Serine--pyruvate aminotransferase (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT)

	TK090902_P14_mitoch_2D_step10.3193.3193.2	1.0627	0.2002	2198.18	4	2630.0%	1	R.EAAAYLHGRLQALGLQLFVK.D
	TK090902_P14_mitoch_2D_step15.3999.3999.2	1.6173	0.4997	2931.63	2	1920.0%	1	R.DIVSYVIDHFDIEIMGGLGPSTGKVLR.I

Q9D0D0

54.2%

318

35284

5.0

(Q9D0D0) 2610025P08Rik protein

*	TK090902_P14_mitoch_2D_step07.3117.3117.1	0.906	0.025	1485.81	123	2500.0%	1	R.KLSIAVNLLCVPR.T
*	TK090902_P14_mitoch_2D_step07.1965.1965.1	0.6318	0.0048	860.91	40	1880.0%	1	R.HGPPVASTP.-
*	TK090902_P14_mitoch_2D_step15.3278.3278.2	1.618	0.4181	2718.75	1	2170.0%	1	R.TDYPTLTPAQLHHLLSHYQLGPGR.G

Q9EP69

54.1%

587

66944

7.3

(Q9EP69) Suppressor of actin mutations (Sac1p protein)

*	TK090902_P14_mitoch_2D_step13.1421.1421.1	1.5292	0.1229	1099.82	1	5620.0%	2	K.YKPHPQISK.V
*	TK090902_P14_mitoch_2D_step11.4605.4605.3	1.1485	0.1244	3902.8	5	1180.0%	1	R.LSILLDQVAEMQDELSYFLVDSAGKVVTNQDGVFR.S
*	TK090902_P14_mitoch_2D_step13.3297.3297.3	0.8831	0.095	3602.34	12	700.0%	2	K.QVIINLVNHKGSEKPLEQTFANMVSSLGSGMIR.Y

Q921P9

54.0%

165

19312

4.5

(Q921P9) Unknown (Protein for MGC:18752)

	TK090902_P14_mitoch_2D_step14.1248.1248.2	1.2168	0.0022	1077.73	32	3750.0%	1	K.HKLEEGSFK.E
*	TK090902_P14_mitoch_2D_step03.2472.2472.1	1.4552	0.1569	1312.72	1	4550.0%	1	R.IPMEQPPCGVGK.H

Q9WTM5

53.9%

463

51113

5.6

(Q9WTM5) DNA helicase

	TK090902_P14_mitoch_2D_step09.2996.2996.2	2.1569	0.2224	2077.94	6	2940.0%	1	R.KEVVHTVSLHEIDVINSR.T

Q9NUX7

53.8%

341

37587

6.0

(Q9NUX7) Hypothetical protein FLJ11068

*	TK090902_P14_mitoch_2D_step07.4143.4143.2	2.0104	0.2432	3164.63	2	1960.0%	2	R.LVLLDLSEGTKGATMDLEIFNLPNVEISK.D
*	TK090902_P14_mitoch_2D_step08.2999.2999.3	1.166	0.0133	2891.93	132	1350.0%	1	K.GATMDLEIFNLPNVEISKDLSASAHSK.V

DDR2_HUMAN

53.7%

855

96752

5.4

(Q16832) Discoidin domain receptor 2 precursor (EC 2.7.1.112) (Receptor protein-tyrosine kinase TKT) (Tyrosine-protein kinase TYRO 10) (Neurotrophic tyrosine kinase, receptor-related 3)

*	TK090902_P14_mitoch_2D_step10.3455.3455.2	1.6315	0.3703	2039.19	1	3750.0%	1	R.NESATNGYIEIMFEFDR.I

RNT1_MOUSE

53.6%

1113

122657

6.7

(Q9EPU0) Regulator of nonsense transcripts 1 (Nonsense mRNA reducing factor 1) (NORF1) (Up-frameshift suppressor 1 homolog)

	TK090902_P14_mitoch_2D_step05.3980.3980.2	1.2074	0.0775	2312.72	9	2140.0%	1	R.QGNGPVLVCAPSNIAVDQLTEK.I
	TK090902_P14_mitoch_2D_step15.3038.3038.3	1.3918	0.0519	3722.4	31	1400.0%	1	K.TVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEK.I
	TK090902_P14_mitoch_2D_step09.2328.2328.1	1.3932	0.2079	1493.95	4	3460.0%	1	R.GNTSGSHIVNHLVR.A

Q9CYD1

53.6%

2.1%

243

27113

9.5

(Q9CYD1) 5730531E12Rik protein

	TK090902_P14_mitoch_2D_step06.2037.2037.1	1.3583	0.2111	596.9	4	6250.0%	3	K.LHVVK.I

OYA1_HUMAN

53.6%

312

35332

8.6

(Q9UKL2) Olfactory receptor 52A1 (HPFH1OR) (HOR3'beta4)

*	TK090902_P14_mitoch_2D_step06.2037.2037.1	1.3583	0.2111	596.9	4	6250.0%	3	R.IHVVK.M

ATC4_HUMAN

53.6%

0.7%

963

105037

6.0

(O75185) Probable calcium-transporting ATPase KIAA0703 (EC 3.6.3.8)

*	TK090902_P14_mitoch_2D_step13.1964.1964.1	1.3974	0.2153	942.93	2	7500.0%	1	K.KYLDQFK.N

A180_MOUSE

53.5%

901

91851

4.9

(Q61548) Clathrin coat assembly protein AP180 (Clathrin coat associated protein AP180) (Phosphoprotein F1-20) (91 kDa synaptosomal-associated protein)

	TK090902_P14_mitoch_2D_step02.4041.4041.2	1.8487	0.2565	3049.51	5	2200.0%	5	K.HLDYLIQATNETNVNIPQMADTLFER.A

ABC1_HUMAN

53.3%

2261

254284

6.9

(O95477) ATP-binding cassette, sub-family A, member 1 (ATP-binding cassette transporter 1) (ATP-binding cassette 1) (ABC-1) (Cholesterol efflux regulatory protein)

*	TK090902_P14_mitoch_2D_step07.2899.2899.2	2.1299	0.2132	1730.13	8	3930.0%	2	R.FLNSLGRFMTGLDTR.N
*	TK090902_P14_mitoch_2D_step08.3142.3142.3	1.4792	0.1215	3367.93	94	1030.0%	1	R.AFGDKQSCLRPFTEDDAADPNDSDIDPESR.E

Q921C5

53.3%

820

93391

5.4

(Q921C5) Bicaudal D protein

	TK090902_P14_mitoch_2D_step07.3379.3379.2	2.1227	0.0305	2296.93	2	2780.0%	1	R.LEEETEYLNSQLEDAIRLK.E
*	TK090902_P14_mitoch_2D_step09.4035.4035.2	1.1855	0.0575	2885.87	9	1670.0%	1	K.ELSHYMSINDSFYTSHLQVSLDGLK.F

RYR3_HUMAN

53.2%

4870

551939

5.7

(Q15413) Ryanodine receptor 3 (Brain-type ryanodine receptor) (RyR3) (RYR-3) (Brain ryanodine receptor-calcium release channel)

*	TK090902_P14_mitoch_2D_step13.3540.3540.2	1.2237	0.0173	2501.16	1	2620.0%	1	K.LLPPQEILVDKLAENAHNVWAK.D
*	TK090902_P14_mitoch_2D_step13.2344.2344.2	1.1683	0.1806	2200.65	19	1940.0%	2	K.FRYNELMQALNMSAALTAR.K
*	TK090902_P14_mitoch_2D_step06.3770.3770.2	1.0167	0.0606	2521.34	18	1820.0%	1	K.ILKYVDSAQEFIAHLEAIVSSGK.T
*	TK090902_P14_mitoch_2D_step09.3996.3996.2	1.6196	0.3447	1962.9	1	3820.0%	1	K.GEKGDTDIMSDLFGLHPK.K
*	TK090902_P14_mitoch_2D_step07.3617.3617.2	1.304	0.217	2800.42	45	1740.0%	1	K.YYCLPSGWGSYGLAVEEELHLTEK.L
*	TK090902_P14_mitoch_2D_step12.4403.4403.2	0.8091	0.0885	3155.6	56	1300.0%	1	R.FHEPAKDIGFNVAVLLTNLSEHMPNDSR.L
*	TK090902_P14_mitoch_2D_step13.2428.2428.1	0.8908	0.1134	1358.73	22	3180.0%	1	K.RIAVYAQPIISK.A

LMA3_HUMAN

53.0%

1713

189304

8.1

(Q16787) Laminin alpha-3 chain precursor (Epiligrin 170 kDa subunit) (E170) (Nicein alpha subunit)

*	TK090902_P14_mitoch_2D_step12.3592.3592.3	1.9628	0.1228	3620.93	3	1610.0%	3	K.EINSLQSDFTKYLTTADSSLLQTNIALQLMEK.S
*	TK090902_P14_mitoch_2D_step04.2167.2167.1	1.0345	0.0945	961.06	22	3750.0%	1	R.GLVFHTGTK.N
*	TK090902_P14_mitoch_2D_step02.2691.2691.3	1.416	0.0231	2386.29	62	1580.0%	1	K.GCIELDDLNENVLSLYNFKK.T
*	TK090902_P14_mitoch_2D_step11.3206.3206.2	1.578	0.0014	2235.58	31	2370.0%	1	R.ENGGTENMFVMYLGNKDASR.D
*	TK090902_P14_mitoch_2D_step04.3586.3586.3	1.0033	0.0719	3579.61	3	1050.0%	1	K.VWQDACSPLPKTQANHGALQFGDIPTSHLLFK.L
*	TK090902_P14_mitoch_2D_step01.1168.1168.1	1.4681	0.0464	922.94	1	6670.0%	2	R.NQLLNYR.S

RL7_MOUSE

53.0%

270

31420

10.9

(P14148) 60S ribosomal protein L7

	TK090902_P14_mitoch_2D_step05.2367.2367.1	1.5204	0.1349	1082.07	3	5000.0%	1	K.KVPAVPETLK.K

RGSE_HUMAN

52.7%

594

64601

8.9

(O43566) Regulator of G-protein signaling 14 (RGS14)

	TK090902_P14_mitoch_2D_step12.4072.4072.2	1.9546	0.2464	2600.02	1	2710.0%	1	K.SLPLGVEELGQLPPVEGPGGRPLRK.S

Q9ERS6

52.6%

686

78798

6.2

(Q9ERS6) TIGIRR-1

*	TK090902_P14_mitoch_2D_step12.2904.2904.3	1.679	0.0066	2350.91	4	2240.0%	1	R.DLIPSGTYIEDLTRCVEQSR.R
*	TK090902_P14_mitoch_2D_step09.2645.2645.1	1.5193	0.1221	1198.35	1	5500.0%	1	R.FGGDETTDDNK.E
	TK090902_P14_mitoch_2D_step08.2831.2831.2	0.851	0.0516	1403.82	52	1820.0%	1	K.VILIECTELKGK.V

Q9Y4D7

52.5%

1985

218188

7.8

(Q9Y4D7) Hypothetical protein KIAA0620 (Fragment)

*	TK090902_P14_mitoch_2D_step09.4179.4179.2	1.6209	0.0588	2474.8	1	3000.0%	2	K.DLDTEKYFHLVLPTDELAEPK.K
*	TK090902_P14_mitoch_2D_step15.4663.4663.3	1.2135	0.0107	3550.83	54	1210.0%	1	K.LGFVSAFLHPSDPPPGAQSYAYLALNSEARAGDK.E
*	TK090902_P14_mitoch_2D_step06.2953.2953.3	1.6909	0.0636	2822.34	8	1880.0%	1	R.ENIEAKPRNLNVSFQGCGMDSLSVR.A

Q8VG02

52.5%

314

35125

8.2

(Q8VG02) Olfactory receptor MOR204-15

*	TK090902_P14_mitoch_2D_step12.3673.3673.3	2.6361	0.1053	2995.1	4	2000.0%	3	R.IVLFSIILCIYLVTVFGNLSTILLIR.V

Q9D4J2

52.5%

199

22447

9.5

(Q9D4J2) 4931429P17Rik protein

*	TK090902_P14_mitoch_2D_step13.3008.3008.3	2.732	0.2308	2587.38	6	2380.0%	1	K.GDDSMYHIPSMDLPDLTLFIFR.H

Q04187

52.3%

782

87592

6.8

(Q04187) Large T antigen

*	TK090902_P14_mitoch_2D_step09.3421.3421.2	1.9166	0.0678	2296.48	4	2500.0%	2	K.TEVYNLRMNLGGTGFQGSPPR.T
	TK090902_P14_mitoch_2D_step01.2732.2732.1	0.8745	0.0945	877.73	83	3330.0%	1	-.MDRVLSR.A
	TK090902_P14_mitoch_2D_step05.3168.3168.3	1.9347	0.1763	3135.42	19	1760.0%	1	K.QQSLLLHPDKGGSHALMQELNSLWGTFK.T
*	TK090902_P14_mitoch_2D_step02.4661.4661.2	0.828	0.0756	3041.94	67	770.0%	2	K.LAFELGVAQDQFVVCFEDVKGQIALNK.Q

AR1B_MOUSE

52.3%

372

41149

8.4

(Q9WV32) ARP2/3 complex 41 kDa subunit (P41-ARC) (Actin-related protein 2/3 complex subunit 1B)

	TK090902_P14_mitoch_2D_step06.2794.2794.2	1.6272	0.3226	2518.58	1	3100.0%	1	K.VHELKEHNGQVTGIDWAPESNR.I

DRN2_MOUSE

52.3%

353

38811

7.5

(P56542) Deoxyribonuclease II precursor (EC 3.1.22.1) (DNase II) (Acid DNase) (Lysosomal DNase II)

*	TK090902_P14_mitoch_2D_step10.4041.4041.3	2.7267	0.1254	3043.75	1	2040.0%	1	R.DSTGHGHTKGVLLLDQEGGFWLVHSVPR.F
*	TK090902_P14_mitoch_2D_step14.2119.2119.2	1.1339	0.1823	1835.08	326	2000.0%	1	K.NSSQLAFLLYNDQPPK.S
*	TK090902_P14_mitoch_2D_step02.4711.4711.2	1.0156	0.131	3097.93	3	1300.0%	1	K.NQHVLHEPWNSSVILTSQAGATFQSFAK.F

O88951

52.2%

207

22914

8.7

(O88951) VELI 2

	TK090902_P14_mitoch_2D_step06.2766.2766.2	1.5701	0.389	2192.46	1	3950.0%	1	K.RGDQLLSVNGVSVEGEHHEK.A

O54988

52.1%

1233

141485

5.1

(O54988) Serine/threonine protein kinase

	TK090902_P14_mitoch_2D_step12.4411.4411.1	1.1411	0.0546	1572.38	7	3080.0%	1	K.SLRINSTATPDQDR.E
	TK090902_P14_mitoch_2D_step07.3343.3343.2	1.3905	0.0961	2456.6	5	2500.0%	3	R.WTTSQLLQHPFVTVDSNKPVR.E
	TK090902_P14_mitoch_2D_step06.1554.1554.1	0.6655	0.0037	757.0	83	3000.0%	1	R.MAMFKK.S

MAPB_MOUSE

52.0%

2464

270409

4.8

(P14873) Microtubule-associated protein 1B (MAP 1B) (MAP1.2) (MAP1(X)) [Contains: MAP1 light chain LC1]

*	TK090902_P14_mitoch_2D_step13.2233.2233.2	1.8999	0.1775	2659.37	2	2830.0%	1	K.DENERASLSPMDEPVPDSESPVEK.V
	TK090902_P14_mitoch_2D_step03.4825.4825.2	0.7149	0.058	2274.07	17	1050.0%	1	K.EECPRPMSISPPDFSPKTAK.S
	TK090902_P14_mitoch_2D_step15.3306.3306.2	1.088	0.1285	2939.67	1	2410.0%	1	R.SSYYVVSGNDPAAEEPSRAVLDALLEGK.A
	TK090902_P14_mitoch_2D_step04.2829.2829.2	1.4528	0.1176	1930.88	11	3530.0%	2	R.SSYYVVSGNDPAAEEPSR.A

ROA1_MOUSE

52.0%

319

34065

9.2

(P49312) Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed)

	TK090902_P14_mitoch_2D_step14.3060.3060.2	1.5266	0.1003	2752.99	1	2080.0%	1	R.SRGFGFVTYATVEEVDAAMNARPHK.V
	TK090902_P14_mitoch_2D_step05.2120.2120.1	1.3881	0.2165	1438.0	1	5000.0%	1	R.EDSQRPGAHLTVK.K

HYES_MOUSE

52.0%

13.2%

554

62515

6.2

(P34914) Soluble epoxide hydrolase (SEH) (EC 3.3.2.3) (Epoxide hydratase) (Cytosolic epoxide hydrolase) (CEH)

*	TK090902_P14_mitoch_2D_step13.2784.2784.2	1.223	0.2646	3003.23	1	2080.0%	1	K.RGHIEDCGHWTQIEKPTEVNQILIK.W
*	TK090902_P14_mitoch_2D_step07.3397.3397.2	1.205	0.3008	2220.93	1	2630.0%	2	K.AKPNEVVFLDDFGSNLKPAR.D
*	TK090902_P14_mitoch_2D_step09.4927.4927.2	0.8056	0.0094	3145.49	109	1110.0%	1	R.VLAIDMKGYGDSSSPPEIEEYAMELLCK.E
*	TK090902_P14_mitoch_2D_step02.3136.3136.2	0.5981	0.1556	2377.67	45	1000.0%	1	K.GYGDSSSPPEIEEYAMELLCK.E

AAC1_HUMAN

51.9%

1.8%

892

102974

5.4

(P12814) Alpha-actinin 1 (Alpha-actinin cytoskeletal isoform) (Non-muscle alpha-actinin 1) (F-actin cross linking protein)

	TK090902_P14_mitoch_2D_step13.1145.1145.1	1.3267	0.3858	719.86	2	6000.0%	1	R.LHKPPK.V
	TK090902_P14_mitoch_2D_step10.2535.2535.1	0.8808	0.076	1228.01	1	3890.0%	1	R.HRPELIDYGK.L

Q9CWW1

51.9%

379

42158

8.6

(Q9CWW1) 2410003B16Rik protein

	TK090902_P14_mitoch_2D_step10.3227.3227.2	1.4747	0.3455	2716.87	1	2080.0%	3	K.VSGLPTPDLSWQLDGKPIRPDSAHK.M
	TK090902_P14_mitoch_2D_step13.3192.3192.2	1.5967	0.3443	2187.94	1	3330.0%	1	R.FFRPHFLQAPGDLTVQEGK.L

ANXA_MOUSE

51.9%

324

37301

5.7

(Q9QZ10) Annexin A10

	TK090902_P14_mitoch_2D_step05.2313.2313.1	1.481	0.132	977.0	5	5710.0%	3	K.EQLSSHFK.E

O95027

51.7%

588

65959

8.4

(O95027) WUGSC:H_DJ1185I07.2 protein (Fragment)

	TK090902_P14_mitoch_2D_step05.2767.2767.1	1.2405	0.0465	1273.04	1	5500.0%	2	K.EELTLVNNVLK.L

Q99JI3

51.7%

10.7%

600

66370

6.7

(Q99JI3) CLASP2

*	TK090902_P14_mitoch_2D_step11.2025.2025.3	1.8981	0.123	2457.71	7	2050.0%	1	K.DKSFDDEESVDGNRPSSAASAFK.V
*	TK090902_P14_mitoch_2D_step05.3673.3673.3	0.8852	0.202	3355.74	52	620.0%	1	R.EEAQNLTLKLMDEVAPPMYIWEQLASGFK.H
*	TK090902_P14_mitoch_2D_step06.2489.2489.1	1.6589	0.0888	1526.94	1	4550.0%	1	K.ELSNHNERIEER.K

Q99KQ7

51.7%

1.8%

622

71121

5.0

(Q99KQ7) Similar to hypothetical protein FLJ10846

	TK090902_P14_mitoch_2D_step05.2096.2096.1	1.6375	0.0906	1197.07	2	4500.0%	1	K.EELSPIQPVGK.F

Q9NY17

51.7%

482

53349

8.2

(Q9NY17) Choline dehydrogenase (Fragment)

*	TK090902_P14_mitoch_2D_step03.3981.3981.2	1.8431	0.2534	2586.18	1	2500.0%	1	R.VWGGSSSLNAMVYVRGHAEDYER.W

PTC2_MOUSE

51.7%

1182

128586

6.6

(O35595) Patched protein homolog 2 (PTC2)

	TK090902_P14_mitoch_2D_step10.3863.3863.2	1.6658	0.2453	2541.66	16	2000.0%	4	R.AEALQSTFLLMSPRQLYEHFR.G
*	TK090902_P14_mitoch_2D_step04.4742.4742.3	1.0879	0.1137	4290.57	11	860.0%	2	R.YFFVVLTVLTLLGLLHGLLLLPVLLSILGPPPQVVQVYK.E

Q9H2M4

51.6%

2.2%

602

67209

7.2

(Q9H2M4) Cycle-like factor CLIF

	TK090902_P14_mitoch_2D_step06.2668.2668.1	1.4323	0.1678	1468.18	1	3750.0%	1	K.DNSNFTCLVAIGR.L

2AAB_HUMAN

51.3%

601

66202

4.9

(P30154) Serine/threonine protein phosphatase 2A, 65 kDa regulatory subunit A, beta isoform (PP2A, subunit A, PR65-beta isoform) (PP2A, subunit A, R1-beta isoform)

*	TK090902_P14_mitoch_2D_step03.1921.1921.2	1.6014	0.3353	2096.94	3	3060.0%	1	K.SEIVPLFTSLASDEQDSVR.L

COA2_HUMAN

51.3%

2483

279691

6.9

(O00763) Acetyl-CoA carboxylase 2 (EC 6.4.1.2) (ACC-beta) [Includes: Biotin carboxylase (EC 6.3.4.14)]

*	TK090902_P14_mitoch_2D_step05.1848.1848.1	0.8766	0.0587	926.1	65	2860.0%	1	R.RNSLPPSR.Q
*	TK090902_P14_mitoch_2D_step07.4813.4813.2	0.5693	0.0126	2557.14	13	1500.0%	1	K.YLYLTPQDYTRISSLNSVHCK.H
*	TK090902_P14_mitoch_2D_step11.2471.2471.2	1.0827	0.1969	2446.78	3	2270.0%	1	K.VHPAEPFTGELPAQQNTADLGKK.L
*	TK090902_P14_mitoch_2D_step09.3147.3147.3	1.5785	0.1049	3315.03	2	1640.0%	1	R.QLMTNFILGSFDDYSSDEDSVAGSSRESTR.K
*	TK090902_P14_mitoch_2D_step03.4679.4679.3	0.9159	0.1227	4289.36	5	710.0%	1	R.GDFRTTVEYLINLLETESFQNNYIDTGWLDYLIAEK.V
*	TK090902_P14_mitoch_2D_step01.2473.2473.1	1.3335	0.3378	1453.77	3	3460.0%	1	K.RPGAVLEAGCVVAR.L
*	TK090902_P14_mitoch_2D_step11.3621.3621.3	1.2079	0.059	3744.28	127	1210.0%	1	K.EASFEYLQNEGERLLLEAMDELEVAFNNTNVR.T
*	TK090902_P14_mitoch_2D_step06.3604.3604.3	1.2376	0.0089	4705.93	17	920.0%	1	R.QKPPRNPLSSSDAAPSPELQANGTGTQGLEATDTNGLSSSARPQGSK.L

Q9DAU1

51.2%

276

30538

5.6

(Q9DAU1) 1600025D17Rik protein (Putative retinoic acid-regulated protein) (RIKEN cDNA 1600025D17 gene)

	TK090902_P14_mitoch_2D_step13.4257.4257.2	1.1236	0.0988	2486.4	1	3610.0%	1	K.KQCDVLVEEFEEVIEDWYR.N
	TK090902_P14_mitoch_2D_step08.2732.2732.1	1.329	0.3371	1146.17	3	4380.0%	1	K.RLLDYSLHK.E

Q8TE71

51.1%

1.4%

1077

120974

6.6

(Q8TE71) EEG1L

*	TK090902_P14_mitoch_2D_step06.3466.3466.1	1.7256	0.0189	1565.77	1	4640.0%	1	K.DFKGGLNGAVYLPSK.E

Q96NU6

51.0%

411

46230

9.2

(Q96NU6) Hypothetical protein FLJ30058

*	TK090902_P14_mitoch_2D_step06.2920.2920.1	1.4145	0.1761	983.67	1	5710.0%	1	R.RNEPTLPR.E

O15422

51.0%

113

13299

9.4

(O15422) Probable zinc finger protein H101 (Fragment)

*	TK090902_P14_mitoch_2D_step01.0746.0746.1	1.659	0.0939	823.59	4	8000.0%	1	R.EFIQER.N

Q9UHI4

50.9%

1308

144375

5.7

(Q9UHI4) NgCAM-related related cell adhesion molecule (Fragment)

	TK090902_P14_mitoch_2D_step10.4529.4529.2	1.4543	0.1874	2089.9	53	2220.0%	1	K.SSRERPPTFLTPEGNASNK.E
	TK090902_P14_mitoch_2D_step14.2759.2759.2	1.681	0.282	2248.33	1	2890.0%	1	K.TLQIIHVSEADSGNYQCIAK.N
	TK090902_P14_mitoch_2D_step04.3017.3017.3	1.5785	0.1317	2891.76	18	1540.0%	1	K.GAKGSALHEDIYVLHENGTLEIPVAQK.D
	TK090902_P14_mitoch_2D_step15.1438.1438.1	0.2851	0.0035	1262.56	4	500.0%	1	K.GKPPPSFSWTR.N
	TK090902_P14_mitoch_2D_step14.3426.3426.2	0.9654	0.0038	3045.15	8	1730.0%	1	K.ILTFQGSKTHGMLPGLEPFSHYTLNVR.V

Q91Y05

50.9%

796

87022

4.9

(Q91Y05) Protocadherin beta 14

*	TK090902_P14_mitoch_2D_step05.2635.2635.2	1.6867	0.2786	1768.67	1	4000.0%	1	R.AEYNITITVSDMGTPR.L

ATM_MOUSE

50.8%

4.1%

3066

349487

6.9

(Q62388) Serine-protein kinase ATM (EC 2.7.1.37) (Ataxia telangiectasia mutated homolog) (A-T, mutated homolog)

*	TK090902_P14_mitoch_2D_step12.3201.3201.2	0.9106	0.0388	2023.01	214	2350.0%	1	K.FQQTSFNNAYTTAEAGIR.G
*	TK090902_P14_mitoch_2D_step04.4146.4146.2	1.5916	0.3342	2769.03	2	2170.0%	2	K.IPDSYQKILLAICEQAAETNNVFK.K
*	TK090902_P14_mitoch_2D_step03.4722.4722.1	0.7323	0.088	1370.77	27	2080.0%	1	R.ASQDNPQDGIVVK.L
*	TK090902_P14_mitoch_2D_step09.4511.4511.2	0.6467	0.0678	2811.65	37	650.0%	1	R.VCGSWLAETCLENPAVIMQTYLEK.A
*	TK090902_P14_mitoch_2D_step09.3089.3089.3	1.1469	0.0050	3817.4	76	1050.0%	1	K.VIYAECLRVCGSWLAETCLENPAVIMQTYLEK.A
*	TK090902_P14_mitoch_2D_step09.3528.3528.1	1.1505	0.0548	1139.75	125	3000.0%	1	K.SNVSATTQSSR.Q
*	TK090902_P14_mitoch_2D_step06.4872.4872.2	0.6573	0.1016	3175.8	8	960.0%	1	R.KLLLLLDSSILDLMKPLHLHMYLVLLK.D

Q8WTQ3

50.8%

30.8%

8274

9.6

(Q8WTQ3) Glycophorin B (Fragment)

*	TK090902_P14_mitoch_2D_step03.3267.3267.2	1.2015	0.0875	2441.43	22	1740.0%	3	-.IVSISALSTTEVAMHTSTSSSVTK.S

AKAC_HUMAN

50.7%

3.1%

1781

191438

4.4

(Q02952) A-kinase anchor protein 12 (A-kinase anchor protein 250 kDa) (AKAP 250) (Myasthenia gravis autoantigen gravin)

*	TK090902_P14_mitoch_2D_step11.3153.3153.2	0.8044	0.0301	2377.13	9	1430.0%	1	K.EVSSLEGSPPPCLGQEEAVCTK.I
*	TK090902_P14_mitoch_2D_step15.2799.2799.3	1.5115	0.0048	2861.08	211	1350.0%	1	K.NGQLSTINGVAEQDELSLQEGDLNGQK.G
*	TK090902_P14_mitoch_2D_step07.2179.2179.1	1.7611	0.0295	887.71	6	7500.0%	1	K.KEQEPEK.V

Q8TDM9

50.7%

1013

110352

7.3

(Q8TDM9) Amplified in breast cancer 1

	TK090902_P14_mitoch_2D_step13.1089.1089.2	1.0841	0.2132	1705.12	3	2140.0%	1	R.QMLCITVLLGLNDSK.N
	TK090902_P14_mitoch_2D_step14.2070.2070.2	1.6328	0.297	1708.93	1	3120.0%	1	K.SGAEGDDTGAPHSPQER.D
*	TK090902_P14_mitoch_2D_step08.2259.2259.3	1.0888	0.0897	3818.78	3	1140.0%	1	R.GYFSMTQAYLMELGEVICKCMGEADPSIQPHGAK.L

O95660

50.3%

280

31651

7.4

(O95660) CD84

*	TK090902_P14_mitoch_2D_step04.3413.3413.1	1.4612	0.1282	1033.43	3	5000.0%	2	R.QGRIFPEGK.M

O15023

50.1%

1539

168848

4.8

(O15023) Hypothetical protein KIAA0305 (Endofin)

*	TK090902_P14_mitoch_2D_step09.4179.4179.3	1.8269	0.0208	3711.7	3	1470.0%	1	K.GLTSIQNEKNVTGLDLLSSVDGGTSDEIQPLYMGR.C
*	TK090902_P14_mitoch_2D_step05.4624.4624.3	1.1022	0.1763	4569.51	2	1190.0%	1	R.MMSPTGSNLKSNHSDECTTVQPPQENQTSSIPSPATLPVSALK.Q
*	TK090902_P14_mitoch_2D_step08.2174.2174.1	1.7569	0.0159	1076.99	6	3890.0%	2	K.QPGVEGLCSK.E
*	TK090902_P14_mitoch_2D_step01.1043.1043.1	0.5479	0.0123	976.8	5	3570.0%	1	K.KLLPDDFK.S
*	TK090902_P14_mitoch_2D_step10.3007.3007.1	0.8307	0.072	744.9	12	3000.0%	1	K.YSDVMK.V
*	TK090902_P14_mitoch_2D_step01.2099.2099.1	0.7161	0.0387	1512.54	6	2690.0%	1	K.SQPCGLLKDVGLVK.E
*	TK090902_P14_mitoch_2D_step03.1820.1820.1	1.2636	0.0704	843.83	3	5000.0%	1	K.EGLVLGQK.Q

Q9QY39

50.1%