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Genomic biology
Bos taurus
Canis familiaris
Danio rerio
Homo sapiens
Mus musculus
Rattus novegicus
Sus scrofa

UniSTS:39246 Links
A002D18
Bos taurus chromosome 20, locus CTNND2
Canis familiaris chromosome 34, locus CTNND2
Equus caballus chromosome 21, locus CTNND2
Gallus gallus chromosome 2, locus CTNND2
Homo sapiens chromosome 5, locus CTNND2
Macaca mulatta chromosome 6, locus LOC716900
Monodelphis domestica chromosome 3
Pan troglodytes chromosome 5, locus CTNND2

Found by e-PCR in sequences from Bos taurus, Canis familiaris, Gallus gallus, Homo sapiens, Ovis aries, Pan troglodytes and Sus scrofa.

Primer InformationHelp

Forward primer:CTGTATCATCATAAAGAAAA
Reverse primer:GTTTCTGACAATTAACATAC
PCR product size:131 (bp), Homo sapiens
GenBank Accession:G19954

   Bos taurus
Name: A002D18
Polymorphism info:  

Cross References Help
Gene GeneID:523661
 Symbol:CTNND2
 Description:catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)
 Position: 
UniGeneBt.33617 Similar to neural plakophilin-related arm-repeat protein (NPRAP)

Mapping InformationHelp
A002D18 Sequence Map: Chr 20 Map Viewer
  Position: 66005478-66005608 (bp)

Electronic PCR results Help
RefSeq mRNA (1)
XM_601963.3 4557 .. 4687 (131 bp)  
 
Genomic (1)
CM000196.3 66005478 .. 66005608 (131 bp)  
 
Working Draft phase 1 (from GenBank HTGS division) (2)
AC173329.2 86813 .. 86943 (131 bp)  
AC223326.1 59548 .. 59678 (131 bp)  
 
ESTs (5 of 21)[Show All Hits]
CB446620.1 39 .. 169 (131 bp)  
CK776225.1 34 .. 164 (131 bp)  
CO883253.1 644 .. 774 (131 bp)  
CO888524.1 323 .. 453 (131 bp)  
DN528405.1 612 .. 742 (131 bp)  
 
Whole Genome Shotgun sequences (2)
AAFC03080530.1 39429 .. 39559 (131 bp)  
AAFC03061308.1 14682 .. 14812 (131 bp)  
 

   Canis familiaris
Name: A002D18
Polymorphism info:  

Cross References Help
Gene GeneID:488048
 Symbol:CTNND2
 Description:catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)
 Position: 

Mapping InformationHelp
A002D18 Sequence Map: Chr 34 Map Viewer
  Position: 6444137-6444267 (bp)

Electronic PCR results Help
RefSeq mRNA (1)
XM_545171.2 4170 .. 4300 (131 bp)  
 
Genomic (1)
CM000034.2 6444137 .. 6444267 (131 bp)  
 
ESTs (1)
DN872214.1 58 .. 188 (131 bp)  
 
Whole Genome Shotgun sequences (1)
AAEX02016788.1 73317 .. 73447 (131 bp)  
 

   Equus caballus
Name: A002D18
Polymorphism info:  

Cross References Help
Gene GeneID:100070792
 Symbol:CTNND2
 Description:catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)
 Position: 

Mapping InformationHelp
A002D18 Sequence Map: Chr 21 Map Viewer
  Position: 48801002-48801132 (bp)

   Gallus gallus
Name: A002D18
Polymorphism info:  

Cross References Help
Gene GeneID:420922
 Symbol:CTNND2
 Description:catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)
 Position: 
UniGeneGga.34463 Similar to neural plakophilin-related arm-repeat protein (NPRAP)

Mapping InformationHelp
A002D18 Sequence Map: Chr 2 Map Viewer
  Position: 80090173-80090304 (bp)

Electronic PCR results Help
RefSeq mRNA (1)
XR_027019.1 4408 .. 4539 (132 bp)  
 
Genomic (1)
CM000094.2 80090173 .. 80090304 (132 bp)  
 
ESTs (1)
AL585422.1 29 .. 160 (132 bp)  
 
Whole Genome Shotgun sequences (1)
AADN02007849.1 25016 .. 25147 (132 bp)  
 

   Homo sapiens
Name: A002D18
Also known as:
Polymorphism info:  

Cross References Help
Gene GeneID:1501
 Symbol:CTNND2
 Description:catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)
 Position:5p15.2
UniGeneHs.314543 Catenin (cadherin-associated protein), delta 2 (neural plakophilin-related a...

Mapping InformationHelp
A002D18 Sequence Map: Chr 5|HuRef Map Viewer
  Position: 10956105-10956235 (bp)
 
A002D18 Sequence Map: Chr 5|Celera Map Viewer
  Position: 11009842-11009972 (bp)
 
A002D18 Sequence Map: Chr 5 Map Viewer
  Position: 11025677-11025807 (bp)
 
A002D18 NCBI RH Map: Chr 5 Map Viewer
  Position: 53.1 (cR)
  Lod score: 1.60
 
A002D18 GeneMap99-GB4 Map: Chr 5 Map Viewer
  Position: 41.84 (cR3000)
  Lod score: 1.08
  Reference Interval: D5S630-D5S478

Electronic PCR results Help
RefSeq mRNA (1)
NM_001332.2 4581 .. 4711 (131 bp)  
 
mRNA (5)
U52828.1 1845 .. 1975 (131 bp)  
U52351.1 3392 .. 3522 (131 bp)  
U96136.1 4437 .. 4567 (131 bp)  
AB013805.1 4582 .. 4712 (131 bp)  
AK127257.1 3523 .. 3653 (131 bp)  
 
Genomic (5 of 10)[Show All Hits]
G19954.1 1 .. 131 (131 bp)  
AC005610.1 100113 .. 100243 (131 bp)  
AC010626.6 154764 .. 154894 (131 bp)  
CH003452.1 11101401 .. 11101531 (131 bp)  
CH003500.1 11707828 .. 11707958 (131 bp)  
 
Working Draft phase 1 (from GenBank HTGS division) (1)
AC093282.1 26738 .. 26868 (131 bp)  
 
Working Draft phase 2 (from GenBank HTGS division) (1)
AC026721.4 78147 .. 78277 (131 bp)  
 
ESTs (5 of 27)[Show All Hits]
T15518.1 34 .. 164 (131 bp)  
T33234.1 34 .. 164 (131 bp)  
T33594.1 34 .. 164 (131 bp)  
F05015.1 34 .. 164 (131 bp)  
F04776.1 34 .. 164 (131 bp)  
 
Whole Genome Shotgun sequences (4)
AADD01055720.1 2158 .. 2288 (131 bp)  
AADC01048838.1 100200 .. 100330 (131 bp)  
AADB02008335.1 365171 .. 365301 (131 bp)  
ABBA01020607.1 301214 .. 301344 (131 bp)  
 

   Macaca mulatta
Name: A002D18
Polymorphism info:  

Cross References Help
Gene GeneID:716900
 Symbol:LOC716900
 Description:similar to catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)
 Position: 
UniGeneMmu.10152 Similar to catenin (cadherin-associated protein), delta 2 (neural plakophili...

Mapping InformationHelp
A002D18 Sequence Map: Chr 6 Map Viewer
  Position: 10909468-10909598 (bp)

   Monodelphis domestica
Name: A002D18
Polymorphism info:  
Mapping InformationHelp
A002D18 Sequence Map: Chr 3 Map Viewer
  Position: 107144956-107145088 (bp)

   Ornithorhynchus anatinus
Name: A002D18
Polymorphism info:  
Mapping InformationHelp
A002D18 Sequence Map: Chr Un|NW_001682088.1 Map Viewer
  Position: 1921500-1921631 (bp)

   Ovis aries
 
Polymorphism info:  

Electronic PCR results Help
ESTs (2)
EE834419.1 472 .. 602 (131 bp)  
FE029142.1 66 .. 196 (131 bp)  
 

   Pan troglodytes
Name: A002D18
Polymorphism info:  

Cross References Help
Gene GeneID:461724
 Symbol:CTNND2
 Description:catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)
 Position: 

Mapping InformationHelp
A002D18 Sequence Map: Chr 5 Map Viewer
  Position: 11180047-11180178 (bp)

Electronic PCR results Help
RefSeq mRNA (5)
XM_001147603.1 4583 .. 4714 (132 bp)  
XM_001147383.1 4614 .. 4745 (132 bp)  
XM_001147533.1 4539 .. 4670 (132 bp)  
XM_001147151.1 4407 .. 4538 (132 bp)  
XM_001147457.1 4344 .. 4475 (132 bp)  
 
Genomic (1)
CM000319.1 11180047 .. 11180178 (132 bp)  
 
Whole Genome Shotgun sequences (2)
AADA01133750.1 451 .. 582 (132 bp)  
AACZ02058162.1 21421 .. 21552 (132 bp)  
 

   Sus scrofa
 
Polymorphism info:  

Electronic PCR results Help
ESTs (1)
CD572627.1 34 .. 164 (131 bp)  
 

   Taeniopygia guttata
 
Polymorphism info:  

Cross References Help
UniGeneTgu.6033 Transcribed locus

 

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