LOCUS YP_988881 1383 aa linear BCT 27-JUL-2008
DEFINITION DNA-directed RNA polymerase subunit beta [Bartonella bacilliformis
KC583].
ACCESSION YP_988881
VERSION YP_988881.1 GI:121602831
DBSOURCE REFSEQ: accession NC_008783.1
KEYWORDS .
SOURCE Bartonella bacilliformis KC583
ORGANISM Bartonella bacilliformis KC583
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
Bartonellaceae; Bartonella.
REFERENCE 1 (residues 1 to 1383)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (10-JAN-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 2 (residues 1 to 1383)
AUTHORS Hendrix,L., Mohamoud,Y., Radune,D., Shvartsbeyn,A., Daugherty,S.,
Dodson,R., Durkin,A.S., Harkins,D., Huot,H., Kothari,S.P.,
Madupu,R., Li,J., Nelson,W.C., Shrivastava,S., Giglio,M.G.,
Haft,D., Selengut,J., Fraser-Ligget,C. and Seshadri,R.
TITLE Direct Submission
JOURNAL Submitted (18-DEC-2006) The Institute for Genomic Research, 9712
Medical Center Dr, Rockville, MD 20850, USA
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence was derived from ABM45609.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..1383
/organism="Bartonella bacilliformis KC583"
/strain="KC583; ATCC 35685"
/db_xref="ATCC:35685"
/db_xref="taxon:360095"
Protein 1..1383
/product="DNA-directed RNA polymerase subunit beta"
/EC_number="2.7.7.6"
/calculated_mol_wt=154716
Region 33..>215
/region_name="RNA_pol_B_RPB2"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; cl04593"
/db_xref="CDD:123214"
Region <321..523
/region_name="RNA_pol_Rpb2_1"
/note="RNA polymerase beta subunit; cl04591"
/db_xref="CDD:123212"
Region <437..>957
/region_name="RNA_pol_B_RPB2"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; cd00653"
/db_xref="CDD:73223"
Site order(823,837)
/site_type="other"
/note="RPB11 interaction site"
/db_xref="CDD:73223"
Site order(842,879,881,885..887,889)
/site_type="other"
/note="RPB12 interaction site"
/db_xref="CDD:73223"
Region <1086..1365
/region_name="RNA_pol_B_RPB2"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; cd00653"
/db_xref="CDD:73223"
Site order(1099,1101,1103,1125,1127,1130,1133,1138,1142,1213,
1240,1248..1250,1252,1265,1268..1270,1272..1273,
1294..1296,1300,1302..1303,1305,1307..1312,1314..1319,
1323,1346,1350,1352,1354..1355,1357,1359..1362,1364)
/site_type="other"
/note="RPB1 interaction site"
/db_xref="CDD:73223"
Site order(1107,1242)
/site_type="other"
/note="RPB11 interaction site"
/db_xref="CDD:73223"
Site order(1108,1121,1148..1149,1151,1236,1253)
/site_type="other"
/note="RPB10 interaction site"
/db_xref="CDD:73223"
Site order(1108..1110,1113,1115..1116,1241..1248,1250)
/site_type="other"
/note="RPB3 interaction site"
/db_xref="CDD:73223"
CDS 1..1383
/gene="rpoB"
/locus_tag="BARBAKC583_0571"
/coded_by="NC_008783.1:577891..582042"
/note="DNA-dependent RNA polymerase catalyzes the
transcription of DNA into RNA using the four
ribonucleoside triphosphates as substrates; beta subunit
is part of the catalytic core which binds with a sigma
factor to produce the holoenzyme"
/transl_table=11
/db_xref="GeneID:4683812"
ORIGIN
1 maqtlammsq fngrkrvrkf fgkipevaem pnlievqkas ydqflmikep kggrpdeglq
61 avfksvfpis dfsgtamlef vryefdapkf dveecrqrdl tyaaplkvil rlivfdided
121 tgskdikdik eqgvymgdmp lmtsngtfii ngtervivsq mhrspgvffd hdkgkshssg
181 kvlfaarvip yrgswldief dakdivyari drrrkipvts flmalgmdas dilstfynkv
241 tyervesgwr ipysvdrfkg vklvsdlvda esgevvaeag kkltartakl lvekglkair
301 vsedellgsy laddivnyet geiyleagde idekvlkvlf dvganqinil didhmsvgay
361 irntlkvdkn esrqdalfdi yrvmrpgepp tidtaeamfh slffdseryd lsavgrvkmn
421 lrmgldcpdt vrvlrqedii gvvkmlvelr dgrgeiddid nlgnrrvrsv gelmenqyrv
481 gllrmeraik ermssveidt vmpqdlinak paaaavreff gssqlsqfmd qtnplseith
541 krrlsalgpg gltreragfe vrdvhpthyg ricpietpeg pniglinsla tfarvnkygf
601 iespyrkitd gkvttevvyl sameeakhyv aqanssldse grfteefvvc rhagevlmvp
661 rdhidlmdvs pkqlvsvaas lipflendda nralmgsnmq rqavplirse apfvgtgmea
721 ivardsgaai sakrggivdq vdatrivira tedldpsksg vdiyrlqkfq rsnqstcinq
781 rplvhvgdri ekgdiiadgp stdlgdlalg rnvlvafmpw ngynyedsil lserivaddv
841 ftsihieefe vaardmklgp eeitrdipnv aeealrnlde agivyigaev qpgdilvgki
901 tpkgespmtp eekllraifg ekasdvrdts mrmppgtfgt vvevrvfnrh gvekderame
961 iereeierla kdrddeqsil drnvyarlag mlkdksairg pkgfekgqki dstvlnnypr
1021 sqwwqfavdd ekvqnkieal cnqydeskea lqrrfmdkve kvqrgdempp gvmkmvkvfv
1081 avkrkiqpgd kmagrhgnkg vvsrilpved mpfledgtha divlnplgvp srmnvgqile
1141 thlgwacagm gkkigdlvdf yqetgdilpl rqrienlipd ndrnepvrqy ddeslvklah
1201 qmrkgvsiat pvfdgahead inamledagl dssgqvtlyd grtgepfdrq vtvgyiymlk
1261 lhhlvddkih arsigpyslv tqqplggkaq fggqrfgeme vwaleaygaa ytlqemltvk
1321 sddvagrtkv yeaivrgddt feasipesfn vlikemrslg lnvklgdare fmaqqalpev
1381 ven
//