BLASTP 2.2.4 [Aug-26-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SAG1801
(559 letters)
Database: nr
1,487,057 sequences; 479,114,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22537940|ref|NP_688791.1| transcriptional antiterminator, Bgl... 1016 0.0
gi|25011881|ref|NP_736276.1| Unknown [Streptococcus agalactiae N... 1015 0.0
gi|21909677|ref|NP_663945.1| putative transcriptional regulator ... 702 0.0
gi|19745345|ref|NP_606481.1| putative transcriptional regulator ... 702 0.0
gi|15674386|ref|NP_268560.1| putative transcriptional regulator ... 701 0.0
gi|24378792|ref|NP_720747.1| putative transcriptional regulator ... 578 e-163
gi|15903885|ref|NP_359435.1| Conserved hypothetical protein [Str... 431 e-119
gi|15901853|ref|NP_346457.1| transcriptional regulator, BglG fam... 430 e-119
gi|15612783|ref|NP_241086.1| BH0220~unknown conserved protein [B... 131 2e-29
gi|20806823|ref|NP_621994.1| Phosphotransferase system mannitol/... 129 2e-28
gi|16804689|ref|NP_466174.1| similar to transcriptional antiterm... 119 1e-25
gi|16801862|ref|NP_472130.1| similar to transcriptional antiterm... 117 4e-25
gi|16801878|ref|NP_472146.1| similar to transcriptional antiterm... 103 7e-21
gi|16804705|ref|NP_466190.1| similar to transcriptional antiterm... 103 9e-21
gi|22990821|ref|ZP_00035615.1| hypothetical protein [Enterococcu... 94 5e-18
gi|16802914|ref|NP_464399.1| Similar to transcriptional regulato... 91 5e-17
gi|21282038|ref|NP_645126.1| ORFID:MW0309~hypothetical protein, ... 91 5e-17
gi|15926034|ref|NP_373567.1| hypothetical protein, similar to tr... 91 7e-17
gi|21911216|ref|NP_665484.1| putative transcriptional regulator ... 91 7e-17
gi|22991304|ref|ZP_00036039.1| hypothetical protein [Enterococcu... 90 9e-17
gi|16802447|ref|NP_463932.1| similar to transcriptional antiterm... 90 9e-17
gi|1480429|gb|AAC44464.1| putative transcriptional regulator [Ge... 90 9e-17
gi|15923322|ref|NP_370856.1| hypothetical protein [Staphylococcu... 90 9e-17
gi|15675752|ref|NP_269926.1| conserved hypothetical protein [Str... 89 2e-16
gi|16799502|ref|NP_469770.1| similar to transcriptional antiterm... 89 2e-16
gi|16799945|ref|NP_470213.1| Similar to transcriptional regulato... 88 4e-16
gi|19746863|ref|NP_607999.1| conserved hypothetical protein [Str... 87 7e-16
gi|21281949|ref|NP_645035.1| ORFID:MW0220~hypothetical protein, ... 87 7e-16
gi|15923234|ref|NP_370768.1| hypothetical protein [Staphylococcu... 87 9e-16
gi|23100057|ref|NP_693523.1| transcriptional antiterminator [Oce... 84 5e-15
gi|28210040|ref|NP_780984.1| transcriptional regulatory protein ... 84 9e-15
gi|22991881|ref|ZP_00036565.1| hypothetical protein [Enterococcu... 84 9e-15
gi|16804138|ref|NP_465623.1| similar to transcription antitermin... 83 1e-14
gi|16763248|ref|NP_458865.1| putative BglB-family transcriptiona... 81 4e-14
gi|16801268|ref|NP_471536.1| similar to transcription antitermin... 80 9e-14
gi|20807093|ref|NP_622264.1| putative transcriptional regulator ... 80 9e-14
gi|15612756|ref|NP_241059.1| BH0193~unknown conserved protein in... 80 1e-13
gi|16767694|ref|NP_463309.1| putative phosphotransferase system ... 80 1e-13
gi|21398751|ref|NP_654736.1| PTS_EIIA_2, Phosphoenolpyruvate-dep... 79 2e-13
gi|23100211|ref|NP_693678.1| hypothetical protein [Oceanobacillu... 79 2e-13
gi|4512373|dbj|BAA75337.1| similar to B.subtilis yjdC gene(24%-i... 79 3e-13
gi|19703543|ref|NP_603105.1| Transcriptional regulatory protein ... 79 3e-13
gi|16799522|ref|NP_469790.1| similar to transcription antitermin... 78 3e-13
gi|28379546|ref|NP_786438.1| transcription regulator [Lactobacil... 77 6e-13
gi|16802469|ref|NP_463954.1| similar to transcription antitermin... 77 6e-13
gi|22536378|ref|NP_687229.1| transcriptional antiterminator, Bgl... 76 2e-12
gi|16080911|ref|NP_391739.1| transcriptional regulator (antiterm... 75 3e-12
gi|29375416|ref|NP_814570.1| conserved hypothetical protein [Ent... 75 3e-12
gi|25010266|ref|NP_734661.1| Unknown [Streptococcus agalactiae N... 75 4e-12
gi|15616415|ref|NP_244720.1| transcriptional antiterminator [Bac... 74 6e-12
gi|30260932|ref|NP_843309.1| transcription antiterminator, BglG ... 73 1e-11
gi|22992393|ref|ZP_00037040.1| hypothetical protein [Enterococcu... 72 2e-11
gi|15925147|ref|NP_372681.1| hypothetical protein [Staphylococcu... 72 3e-11
gi|21283812|ref|NP_646900.1| ORFID:MW2083~hypothetical protein, ... 72 3e-11
gi|22992811|ref|ZP_00037434.1| hypothetical protein [Enterococcu... 71 4e-11
gi|26553899|ref|NP_757833.1| transcriptional antiterminator BglG... 70 1e-10
gi|20806857|ref|NP_622028.1| putative transcriptional regulator ... 69 2e-10
gi|23023367|ref|ZP_00062604.1| hypothetical protein [Leuconostoc... 69 3e-10
gi|23024512|ref|ZP_00063721.1| hypothetical protein [Leuconostoc... 68 4e-10
gi|16801308|ref|NP_471576.1| similar to transcription regulator ... 67 1e-09
gi|16077483|ref|NP_388297.1| similar to transcriptional antiterm... 66 1e-09
gi|16799990|ref|NP_470258.1| similar to transcription antitermin... 66 1e-09
gi|16804177|ref|NP_465662.1| similar to transcription regulator ... 65 2e-09
gi|30018965|ref|NP_830596.1| Transcription antiterminator, BglG ... 65 4e-09
gi|26250310|ref|NP_756350.1| Putative transcriptional Antitermin... 64 6e-09
gi|16078265|ref|NP_389082.1| similar to transcriptional antiterm... 64 8e-09
gi|9965183|gb|AAG09976.1|AF248038_5 DeoR regulator [Streptococcu... 64 9e-09
gi|16802959|ref|NP_464444.1| similar to transcription antitermin... 63 1e-08
gi|29377430|ref|NP_816584.1| transcriptional antiterminator, bgl... 63 2e-08
gi|15901945|ref|NP_346549.1| transcriptional regulator, BglG fam... 62 3e-08
gi|16804821|ref|NP_466306.1| similar to lichenan operon transcri... 62 3e-08
gi|28377161|ref|NP_784053.1| transcription regulator, mannitol o... 62 4e-08
gi|15902323|ref|NP_357873.1| Transcription antiterminator BglG f... 61 5e-08
gi|16802343|ref|NP_463828.1| similar to transcriptional antiterm... 61 7e-08
gi|19746303|ref|NP_607439.1| putative transcriptional antitermin... 60 8e-08
gi|3025455|gb|AAC12849.1| MtlR [Clostridium acetobutylicum] 60 9e-08
gi|32450784|gb|AAO26324.1| putative transcriptional regulator [L... 60 9e-08
gi|28379854|ref|NP_786746.1| multidomain protein [Lactobacillus ... 60 1e-07
gi|15675268|ref|NP_269442.1| putative transcriptional antitermin... 60 1e-07
gi|15893450|ref|NP_346799.1| Putative regulator of the PTS syste... 60 1e-07
gi|24379980|ref|NP_721935.1| putative transcriptional regulator;... 60 1e-07
gi|21910541|ref|NP_664809.1| putative transcriptional antitermin... 59 2e-07
gi|15900239|ref|NP_344843.1| transcriptional regulator, putative... 59 3e-07
gi|23100219|ref|NP_693686.1| transcriptional antiterminator of l... 58 4e-07
gi|22993404|ref|ZP_00038004.1| hypothetical protein [Enterococcu... 55 3e-06
gi|29375043|ref|NP_814196.1| transcriptional regulator, putative... 55 4e-06
gi|26553957|ref|NP_757891.1| putative transcription antiterminat... 54 7e-06
gi|16799402|ref|NP_469670.1| similar to transcriptional antiterm... 51 5e-05
gi|15925630|ref|NP_373164.1| hypothetical protein [Staphylococcu... 50 8e-05
>gi|22537940|ref|NP_688791.1| transcriptional antiterminator, BglG
family [Streptococcus agalactiae 2603V/R]
gi|22534839|gb|AAN00664.1|AE014273_11 transcriptional
antiterminator, BglG family [Streptococcus agalactiae
2603V/R]
Length = 559
Score = 1016 bits (2626), Expect = 0.0
Identities = 558/559 (99%), Positives = 559/559 (99%)
Query: 1 LIILDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYP 60
+IILDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYP
Sbjct: 1 MIILDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYP 60
Query: 61 RVGILLTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVS 120
RVGILLTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVS
Sbjct: 61 RVGILLTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVS 120
Query: 121 RNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSF 180
RNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSF
Sbjct: 121 RNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSF 180
Query: 181 IDLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAY 240
IDLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAY
Sbjct: 181 IDLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAY 240
Query: 241 RKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFR 300
RKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFR
Sbjct: 241 RKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFR 300
Query: 301 KDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIF 360
KDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIF
Sbjct: 301 KDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIF 360
Query: 361 SVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPNK 420
SVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPNK
Sbjct: 361 SVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPNK 420
Query: 421 LKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTSDALES 480
LKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTSDALES
Sbjct: 421 LKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTSDALES 480
Query: 481 RFPMLVVHPVLTDDDIIRLIRFSKKGNCANSNQFTNELEKTIAQYVKEDSERYVLKSKIE 540
RFPMLVVHPVLTDDDIIRLIRFSKKGNCANSNQFTNELEKTIAQYVKEDSERYVLKSKIE
Sbjct: 481 RFPMLVVHPVLTDDDIIRLIRFSKKGNCANSNQFTNELEKTIAQYVKEDSERYVLKSKIE 540
Query: 541 KLIHQELLQDVLPLQSTVC 559
KLIHQELLQDVLPLQSTVC
Sbjct: 541 KLIHQELLQDVLPLQSTVC 559
>gi|25011881|ref|NP_736276.1| Unknown [Streptococcus agalactiae
NEM316]
gi|24413422|emb|CAD47501.1| Unknown [Streptococcus agalactiae
NEM316]
Length = 559
Score = 1015 bits (2625), Expect = 0.0
Identities = 557/559 (99%), Positives = 559/559 (99%)
Query: 1 LIILDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYP 60
+IILDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYP
Sbjct: 1 MIILDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYP 60
Query: 61 RVGILLTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVS 120
RVGILLTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDR+TIDRLMQLNDVS
Sbjct: 61 RVGILLTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRITIDRLMQLNDVS 120
Query: 121 RNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSF 180
RNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSF
Sbjct: 121 RNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSF 180
Query: 181 IDLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAY 240
IDLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAY
Sbjct: 181 IDLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAY 240
Query: 241 RKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFR 300
RKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFR
Sbjct: 241 RKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFR 300
Query: 301 KDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIF 360
KDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIF
Sbjct: 301 KDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIF 360
Query: 361 SVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPNK 420
SVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPNK
Sbjct: 361 SVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPNK 420
Query: 421 LKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTSDALES 480
LKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTSDALES
Sbjct: 421 LKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTSDALES 480
Query: 481 RFPMLVVHPVLTDDDIIRLIRFSKKGNCANSNQFTNELEKTIAQYVKEDSERYVLKSKIE 540
RFPMLVVHPVLTDDDIIRLIRFSKKGNCANSNQFTNELEKTIAQYVKEDSERYVLKSKIE
Sbjct: 481 RFPMLVVHPVLTDDDIIRLIRFSKKGNCANSNQFTNELEKTIAQYVKEDSERYVLKSKIE 540
Query: 541 KLIHQELLQDVLPLQSTVC 559
KLIHQELLQDVLPLQSTVC
Sbjct: 541 KLIHQELLQDVLPLQSTVC 559
>gi|21909677|ref|NP_663945.1| putative transcriptional regulator
[Streptococcus pyogenes MGAS315]
gi|28895057|ref|NP_801407.1| putative transcriptional regulator
[Streptococcus pyogenes SSI-1]
gi|21903860|gb|AAM78748.1| putative transcriptional regulator
[Streptococcus pyogenes MGAS315]
gi|28810302|dbj|BAC63240.1| putative transcriptional regulator
[Streptococcus pyogenes SSI-1]
Length = 548
Score = 702 bits (1813), Expect = 0.0
Identities = 369/548 (67%), Positives = 456/548 (82%)
Query: 1 LIILDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYP 60
++ILDKKSYDLL YLLKLE PETVMAI++ALNQSRRKVYY L+KIN ALP V QI+SYP
Sbjct: 1 MMILDKKSYDLLSYLLKLETPETVMAISHALNQSRRKVYYQLDKINKALPKGVDQIISYP 60
Query: 61 RVGILLTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVS 120
R+GILLT QKAACRLLL+EVTDY+YVMKS ER +LS + I V+ +RVTID+LMQ+NDVS
Sbjct: 61 RLGILLTADQKAACRLLLEEVTDYNYVMKSDERRRLSSIYIAVSTERVTIDKLMQINDVS 120
Query: 121 RNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSF 180
RNTILNDL ELR EL +K+Y +QL +TK RGY+ HP+++IQYLYKLL D+Y G++SF
Sbjct: 121 RNTILNDLTELREELEDKQYKIQLHATKARGYYFGCHPMALIQYLYKLLVDVYQGGNTSF 180
Query: 181 IDLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAY 240
ID+FN KLS+ G S YFSK++L YFH YLF+SQ SLGK IN+QD QFM+QILPF+L++Y
Sbjct: 181 IDIFNRKLSEIQGLSVYFSKDILTYFHEYLFLSQASLGKTINTQDSQFMLQILPFMLLSY 240
Query: 241 RKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFR 300
R MRL E +++L +F L+W+RKEY IA++LA EL NF+L LD+IEV +VAMLMLSFR
Sbjct: 241 RNMRLDSETKSALKQEFHLIWKRKEYHIAQDLARELYHNFKLHLDDIEVSMVAMLMLSFR 300
Query: 301 KDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIF 360
KD+D+H+ESQDYDDMRAT++ F+ +LE RY LHF HK+DLL+QL THCKAL+YRK YGIF
Sbjct: 301 KDQDHHVESQDYDDMRATISHFIDQLESRYQLHFTHKQDLLKQLTTHCKALVYRKAYGIF 360
Query: 361 SVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPNK 420
VNPLT+HIK+KYEELFA+T S +LE+ W I LTDDD+AYLTIHLGGELR++ K
Sbjct: 361 LVNPLTDHIKEKYEELFAMTQSCATILEQDWTISLTDDDIAYLTIHLGGELRHNNTEQEK 420
Query: 421 LKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTSDALES 480
KLVIVSD+GI IQKLL KQCQRYL N IEAVFTTEQYQSV DL+ VDM+V+T+D L++
Sbjct: 421 TKLVIVSDDGIGIQKLLFKQCQRYLANGQIEAVFTTEQYQSVYDLLAVDMIVATTDTLKT 480
Query: 481 RFPMLVVHPVLTDDDIIRLIRFSKKGNCANSNQFTNELEKTIAQYVKEDSERYVLKSKIE 540
+ PML+V+P+L+DDDII+LIRFSK+G + ++F+ EL K I VK++S+RY L SKIE
Sbjct: 481 KIPMLIVNPILSDDDIIKLIRFSKQGRLSEHSRFSTELTKAIEAVVKDESDRYALVSKIE 540
Query: 541 KLIHQELL 548
KLIH+ELL
Sbjct: 541 KLIHRELL 548
>gi|19745345|ref|NP_606481.1| putative transcriptional regulator
[Streptococcus pyogenes MGAS8232]
gi|19747448|gb|AAL96980.1| putative transcriptional regulator
[Streptococcus pyogenes MGAS8232]
Length = 547
Score = 702 bits (1811), Expect = 0.0
Identities = 368/547 (67%), Positives = 454/547 (82%)
Query: 2 IILDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPR 61
+ILDKKSYDLL YLLKLE PETVMAI++ALNQSRRKVYY L+KIN ALP V QI+SYPR
Sbjct: 1 MILDKKSYDLLSYLLKLETPETVMAISHALNQSRRKVYYQLDKINQALPKGVDQIISYPR 60
Query: 62 VGILLTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSR 121
+GILLT QKAACRLLL+EVTDY+YVMKS ER +LS + I V+ +RVTID+LMQ+NDVSR
Sbjct: 61 LGILLTADQKAACRLLLEEVTDYNYVMKSDERRRLSSIYIAVSTERVTIDKLMQINDVSR 120
Query: 122 NTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFI 181
NTILNDL ELR EL +K+Y +QL +TK RGY+ HP+++IQYLYKLL D+Y G++SFI
Sbjct: 121 NTILNDLTELREELEDKQYKIQLHATKARGYYFGCHPMALIQYLYKLLVDVYQGGNTSFI 180
Query: 182 DLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAYR 241
D+FN KLS+ G S YFSK++L YFH YLF+SQ SLGK IN+QD QFM+QILPF+L++YR
Sbjct: 181 DIFNRKLSEIQGLSVYFSKDILTYFHEYLFLSQASLGKTINTQDSQFMLQILPFMLLSYR 240
Query: 242 KMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFRK 301
MRL E +++L +F L+W+RKEY IA++LA EL NF+ LD+IEV +VAMLMLSFRK
Sbjct: 241 NMRLDSETKSALKQEFHLIWKRKEYHIAQDLARELYHNFKFHLDDIEVSMVAMLMLSFRK 300
Query: 302 DRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFS 361
D+D+H+ESQDYDDMRAT++ F+ +LE RY LHF HK+DLL+QL THCKAL+YRK YGIF
Sbjct: 301 DQDHHVESQDYDDMRATISHFIDQLESRYQLHFTHKQDLLKQLTTHCKALVYRKAYGIFL 360
Query: 362 VNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPNKL 421
VNPLT+HIK+KYEELFA+T S +LE+ W I LTDDD+AYLTIHLGGELR++ K
Sbjct: 361 VNPLTDHIKEKYEELFAMTQSCATILEQDWTISLTDDDIAYLTIHLGGELRHNNTEQEKT 420
Query: 422 KLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTSDALESR 481
KLVIVSD+GI IQKLL KQCQRYL N IEAVFTTEQYQSV DL+ VDM+V+T+D L+++
Sbjct: 421 KLVIVSDDGIGIQKLLFKQCQRYLANGQIEAVFTTEQYQSVYDLLAVDMIVATTDTLKTK 480
Query: 482 FPMLVVHPVLTDDDIIRLIRFSKKGNCANSNQFTNELEKTIAQYVKEDSERYVLKSKIEK 541
PML+V+P+L+DDDII+LIRFSK+G + ++F+ EL K I VK++S+RY L SKIEK
Sbjct: 481 IPMLIVNPILSDDDIIKLIRFSKQGRLSEHSRFSTELTKAIEAVVKDESDRYALVSKIEK 540
Query: 542 LIHQELL 548
LIH+ELL
Sbjct: 541 LIHRELL 547
>gi|15674386|ref|NP_268560.1| putative transcriptional regulator
[Streptococcus pyogenes]
gi|13621476|gb|AAK33281.1| putative transcriptional regulator
[Streptococcus pyogenes M1 GAS]
Length = 547
Score = 701 bits (1809), Expect = 0.0
Identities = 367/547 (67%), Positives = 455/547 (83%)
Query: 2 IILDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPR 61
+ILDKKSYDLL YLLKLE PETVMAI++ALNQSRRKVYY L+KIN ALP V QI+SYPR
Sbjct: 1 MILDKKSYDLLSYLLKLETPETVMAISHALNQSRRKVYYQLDKINQALPKGVDQIISYPR 60
Query: 62 VGILLTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSR 121
+GILLT QKAACRLLL+EVTDY+YVMKS ER +LS + I V+ +RVTID+LMQ+NDVSR
Sbjct: 61 LGILLTADQKAACRLLLEEVTDYNYVMKSDERRRLSSIYIAVSTERVTIDKLMQINDVSR 120
Query: 122 NTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFI 181
NTILNDL ELR EL +K+Y +QL +TK RGY+ HP+++IQYLYKLL D+Y G++SFI
Sbjct: 121 NTILNDLTELREELEDKQYKIQLHATKARGYYFGCHPMALIQYLYKLLVDVYQGGNTSFI 180
Query: 182 DLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAYR 241
D+FN KLS+ G S YFSK++L YFH YLF+SQ SLGK IN+QD QFM+QILPF+L++YR
Sbjct: 181 DIFNRKLSEIQGLSVYFSKDILTYFHEYLFLSQASLGKTINTQDSQFMLQILPFMLLSYR 240
Query: 242 KMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFRK 301
MRL E +++L +F L+W+RKEY IA++LA EL NF+L LD+IEV +VAMLMLSFRK
Sbjct: 241 NMRLDSETKSALKQEFHLIWKRKEYHIAQDLARELYHNFKLHLDDIEVSMVAMLMLSFRK 300
Query: 302 DRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFS 361
D+D+H+ESQDYDDMRAT++ F+ +LE RY LHF HK+DLL++L THCKAL+YRK YGIF
Sbjct: 301 DQDHHVESQDYDDMRATISHFIDQLESRYQLHFTHKQDLLKRLTTHCKALVYRKAYGIFL 360
Query: 362 VNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPNKL 421
VNPLT+H+K+KYEELFA+T S +LE+ W I LTDDD+AYLTIHLGGELR++ K
Sbjct: 361 VNPLTDHVKEKYEELFAMTQSCATILEQDWTISLTDDDIAYLTIHLGGELRHNNTEQEKT 420
Query: 422 KLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTSDALESR 481
KLVIVSD+GI IQKLL KQCQRYL N IEAVFTTEQYQSV DL+ VDM+V+T+D L+++
Sbjct: 421 KLVIVSDDGIGIQKLLFKQCQRYLANGQIEAVFTTEQYQSVYDLLAVDMIVATTDTLKTK 480
Query: 482 FPMLVVHPVLTDDDIIRLIRFSKKGNCANSNQFTNELEKTIAQYVKEDSERYVLKSKIEK 541
PML+V+P+L+DDDII+LIRFSK+G + ++F+ EL K I VK++S+RY L SKIEK
Sbjct: 481 IPMLIVNPILSDDDIIKLIRFSKQGRLSEHSRFSTELTKAIEAVVKDESDRYALVSKIEK 540
Query: 542 LIHQELL 548
LIH+ELL
Sbjct: 541 LIHRELL 547
>gi|24378792|ref|NP_720747.1| putative transcriptional regulator
[Streptococcus mutans UA159]
gi|24376664|gb|AAN58053.1|AE014877_8 putative transcriptional
regulator [Streptococcus mutans UA159]
Length = 555
Score = 578 bits (1489), Expect = e-163
Identities = 312/551 (56%), Positives = 413/551 (74%), Gaps = 1/551 (0%)
Query: 1 LIILDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYP 60
+IILD+ SYDLL YL+KLEEPETVM+I+ LNQSRRKVYYHL+KIN+ALPS++P+I+SYP
Sbjct: 1 MIILDRNSYDLLSYLIKLEEPETVMSISKVLNQSRRKVYYHLDKINEALPSEIPKIISYP 60
Query: 61 RVGILLTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVS 120
R+GILL+ +QKAACR LL ++ DYSYVM ER+ LS+ I +AKDRVTI++LMQ+N VS
Sbjct: 61 RIGILLSSQQKAACRTLLADLDDYSYVMSIQERMLLSITYIAIAKDRVTIEKLMQINAVS 120
Query: 121 RNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSF 180
RNTILNDLNELR L+ + Y+++LQ+TK +GY+LD HPLS IQYL KLL IY + + +F
Sbjct: 121 RNTILNDLNELRQRLSFEPYSIKLQATKSKGYYLDCHPLSKIQYLNKLLHTIYTDSNPNF 180
Query: 181 IDLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAY 240
I + KL S+YFS ++ + L +SQ LGKKINSQD +FM+ LP+ L++Y
Sbjct: 181 IAMMRDKLRDFADLSSYFSDDISSFIRGELQVSQALLGKKINSQDIRFMVATLPYQLLSY 240
Query: 241 RKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFR 300
+ + LS Q L S+FS + +RKEYEIA+ L + L+ F + LDEIE L+A+L+LS+R
Sbjct: 241 QNLGLSEREQRDLLSEFSPIKERKEYEIARHLNENLKREFHIELDEIETSLIAVLLLSYR 300
Query: 301 KDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIF 360
KDRD HLES DYDDMR L+ F+ E YH+ F HK+ LL QLLTHCKALL+RK YGI
Sbjct: 301 KDRDMHLESHDYDDMRRVLSYFIDAFELDYHVCFKHKQLLLNQLLTHCKALLFRKAYGIV 360
Query: 361 SVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPNK 420
S NPLT+ IKDKY +LFA+T + +LE AW IK+ DDD+AY+TIH+GGEL +S+ P
Sbjct: 361 SNNPLTDQIKDKYADLFAMTKVCLSILENAWSIKMNDDDIAYITIHIGGELVHSETKPTP 420
Query: 421 LK-LVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTSDALE 479
L +V DEGI +QKL ++QC++YL +S IEAV T+EQ+ SV+D+M VD+V+ST+D+L+
Sbjct: 421 PAVLTLVCDEGIGVQKLFMQQCKQYLPHSKIEAVLTSEQFYSVADIMAVDLVISTNDSLD 480
Query: 480 SRFPMLVVHPVLTDDDIIRLIRFSKKGNCANSNQFTNELEKTIAQYVKEDSERYVLKSKI 539
++ P L VH +L DDD I+LIRF+K+ + F +LE I YVK DS+ YVLK+KI
Sbjct: 481 TQLPTLFVHSILRDDDAIKLIRFAKQRGQTGQDDFDKKLETYIRHYVKNDSDCYVLKTKI 540
Query: 540 EKLIHQELLQD 550
E LI++ELL D
Sbjct: 541 EGLINEELLYD 551
>gi|15903885|ref|NP_359435.1| Conserved hypothetical protein
[Streptococcus pneumoniae R6]
gi|25379658|pir||A99702 conserved hypothetical protein spr1843
[imported] - Streptococcus pneumoniae (strain R6)
gi|15459532|gb|AAL00646.1| Conserved hypothetical protein
[Streptococcus pneumoniae R6]
Length = 557
Score = 431 bits (1107), Expect = e-119
Identities = 236/549 (42%), Positives = 367/549 (65%), Gaps = 2/549 (0%)
Query: 2 IILDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPR 61
++LDK S DLL YL+ E +T+MAI+ L +SRRK+YYH++KIN AL + I+S PR
Sbjct: 1 MVLDKASCDLLQYLMDQETSKTIMAISKDLKESRRKIYYHIDKINAALGDEALHIISIPR 60
Query: 62 VGILLTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSR 121
+GI LTE+Q+ AC LL EV Y Y+M + ER+ + L+ I ++K+R+TI++L++L +VSR
Sbjct: 61 IGIHLTEEQRDACCKLLSEVDSYDYIMSAHERMMIMLLWIGISKERITIEKLIELTEVSR 120
Query: 122 NTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFI 181
NT+LNDLN +R +L ++Y + LQ +K +GY L HPL+ IQYL LL I+ +++F+
Sbjct: 121 NTVLNDLNSIRYQLTLEQYQVTLQVSKSQGYHLHAHPLNKIQYLQSLLYHIFMEENATFV 180
Query: 182 DLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAYR 241
+ K+ + S E+ +F + + ++ LGKKIN + FM+Q+LP++L++
Sbjct: 181 SILEDKMKERLDDECLLSVEMNQFFKEQVPLVEQDLGKKINHHEITFMLQVLPYLLLSCH 240
Query: 242 KMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFRK 301
+ E + +FSL+ +R EY+++K+L + L + F++SL +EV LVA+L+LS+RK
Sbjct: 241 NVEQYQERHQDIEKEFSLIRKRIEYQVSKKLGERLFQKFEISLSGLEVSLVAVLLLSYRK 300
Query: 302 DRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFS 361
D D H ES D+ ++ L F+ E + + +K DLLR L+ HCK+LL+RK YGIFS
Sbjct: 301 DLDIHAESDDFRQLKLALEEFIWYFESQIRMEIENKDDLLRNLMIHCKSLLFRKTYGIFS 360
Query: 362 VNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPNKL 421
NPLT+ I+ KY ELF +T S ++LE AW I+LTDDD+AYLTIH+GG L+ + S +
Sbjct: 361 KNPLTKQIRSKYGELFLVTRKSAEILEGAWFIRLTDDDIAYLTIHIGGFLKYTPSSQKNM 420
Query: 422 KLV-IVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTSDALES 480
K V +V DEG+A+ +LLLKQC+ Y N I+ VFTTEQ++SV D+ VD+V++T+D L+S
Sbjct: 421 KKVYLVCDEGVAVSRLLLKQCKLYFPNEQIDTVFTTEQFKSVEDIAQVDVVITTNDDLDS 480
Query: 481 RFPMLVVHPVLTDDDIIRLIRFSKKGNCAN-SNQFTNELEKTIAQYVKEDSERYVLKSKI 539
RFP+L V+P+L +DI++++ + K N S F+ L I+ Y+ + + ++
Sbjct: 481 RFPILRVNPILEAEDILKMLDYLKHNIFRNESKSFSENLSSLISSYIVDSKLASKFQEEV 540
Query: 540 EKLIHQELL 548
+ LI+QE++
Sbjct: 541 QTLINQEIV 549
>gi|15901853|ref|NP_346457.1| transcriptional regulator, BglG family
[Streptococcus pneumoniae TIGR4]
gi|25379656|pir||H95237 transcription regulator, BglG family
[imported] - Streptococcus pneumoniae (strain TIGR4)
gi|14973542|gb|AAK76097.1| transcriptional regulator, BglG family
[Streptococcus pneumoniae TIGR4]
Length = 557
Score = 430 bits (1106), Expect = e-119
Identities = 237/549 (43%), Positives = 367/549 (66%), Gaps = 2/549 (0%)
Query: 2 IILDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPR 61
++LDK S DLL YL+ E +T+MAI+ L +SRRK+YYH++KIN AL + I+S PR
Sbjct: 1 MVLDKASCDLLQYLMDQETSKTIMAISKDLKESRRKIYYHIDKINAALGDEALHIISIPR 60
Query: 62 VGILLTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSR 121
+GI LTE+Q+ AC LL EV Y Y+M + ER+ + L+ I ++K+R+TI++L++L +VSR
Sbjct: 61 IGIHLTEEQRDACCKLLSEVDSYDYIMSAHERMMIMLLWIGISKERITIEKLIELTEVSR 120
Query: 122 NTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFI 181
NT+LNDLN +R +L ++Y + LQ +K +GY L HPL+ IQYL LL I+ +++F+
Sbjct: 121 NTVLNDLNSIRYQLTLEQYQVILQVSKSQGYNLHAHPLNKIQYLQSLLYHIFMEENATFV 180
Query: 182 DLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAYR 241
+ K+ + S E+ +F + + ++ LGKKIN + FM+Q+LP++L++
Sbjct: 181 SILEDKMKERLDDECLLSVEMNQFFKEQVPLVEQDLGKKINHHEITFMLQVLPYLLLSCH 240
Query: 242 KMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFRK 301
+ E + +FSL+ +R EY+++K+L + L + F++SL +EV LVA+L+LS+RK
Sbjct: 241 NVEQYQERHQDIEKEFSLIRKRIEYQVSKKLGERLFQKFEISLSGLEVSLVAVLLLSYRK 300
Query: 302 DRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFS 361
D D H ES D+ ++ L F+ E + + +K DLLR L+ HCKALL+RK YGIFS
Sbjct: 301 DLDIHAESDDFRQLKLALEEFIWYFESQIRMEIENKDDLLRNLMIHCKALLFRKTYGIFS 360
Query: 362 VNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPNKL 421
NPLT+ I+ KY ELF +T S ++LE AW I+LTDDD+AYLTIH+GG L+ + S +
Sbjct: 361 KNPLTKQIRSKYGELFLVTRKSAEILEGAWFIRLTDDDIAYLTIHIGGFLKYTPSSQKNM 420
Query: 422 KLV-IVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTSDALES 480
K V +V DEG+A+ +LLLKQC+ Y N I+ VFTTEQ++SV D+ VD+V++T+D L+S
Sbjct: 421 KKVYLVCDEGVAVSRLLLKQCKLYFPNEQIDTVFTTEQFKSVEDIAQVDVVITTNDDLDS 480
Query: 481 RFPMLVVHPVLTDDDIIRLIRFSKKGNCAN-SNQFTNELEKTIAQYVKEDSERYVLKSKI 539
RFP+L V+P+L +DI++++ + K N S F+ L I+ Y+ + + ++
Sbjct: 481 RFPILRVNPILEAEDILKMLDYLKHNIFRNKSKSFSENLSSLISSYIVDSKLASKFQEEV 540
Query: 540 EKLIHQELL 548
+ LI+QE++
Sbjct: 541 QTLINQEIV 549
>gi|15612783|ref|NP_241086.1| BH0220~unknown conserved protein
[Bacillus halodurans]
gi|25489155|pir||D83677 hypothetical protein BH0220 [imported] -
Bacillus halodurans (strain C-125)
gi|10172832|dbj|BAB03939.1| BH0220 [Bacillus halodurans]
Length = 701
Score = 131 bits (330), Expect = 2e-29
Identities = 136/511 (26%), Positives = 234/511 (45%), Gaps = 29/511 (5%)
Query: 4 LDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRV- 62
LD++S +L LL + + LN SRR VY LEKIN L + V R
Sbjct: 3 LDQRSTFILTQLLHARSYLPIQELTQKLNVSRRTVYNDLEKINSWLEEQGLKAVYKVRSQ 62
Query: 63 GILLTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRN 122
G++L E+ K L + + Y + ER ++ ++ + + ++ LM VSRN
Sbjct: 63 GLILDERAKEEIPTKLRSLKSWHYEYSAQERKAWVVIYLLTRLEPLFLEHLMDRTGVSRN 122
Query: 123 TILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPL----SIIQYLYKLLDDIYHNGSS 178
T ++D+ L+ EL ++L L+ + GY + G +++ YL + L
Sbjct: 123 TTIDDIKCLKDEL--NNFHLALEFERKDGYTISGDETDKRKALVYYLSQALPQQNWETEL 180
Query: 179 SFIDLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILM 238
S I +F L F+ E L + + S++ L KI D L F+L
Sbjct: 181 SPIRIF---LRTKRDNGRIFTIEELQKVYDVISESEKVL--KIQYTDDVLHSLSLRFLLF 235
Query: 239 AYRK-----MRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVA 293
R +++ P + L KEYE AK ++ +LE+ F + + EV +
Sbjct: 236 MKRVAKGKFIKVHPLEKQVLKGT-------KEYEAAKVMSFKLEQAFGVHYPDEEVLYLT 288
Query: 294 MLMLSFRKDRDN-HLES-QDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKAL 351
+LS + + N +ES ++ ++ +TS + + ++ + F K+ L + L H K
Sbjct: 289 THILSSKINYANGEIESRKESQELTHIVTSMVNDFQKYACVVFEEKELLEKNLFFHIKPA 348
Query: 352 LYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGEL 411
YR +YG+ N + E IK Y ELF +T V LE+ + D++VA++T+H G +
Sbjct: 349 FYRIKYGLEVENNIAESIKTSYPELFLLTRKVVHYLERYVGKSVNDNEVAFITMHFVGWM 408
Query: 412 RNSQQSPNKL-KLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDM 470
R P K K +IV G+ + L Q + DI + +Y+ + VD
Sbjct: 409 RREGTIPTKRKKALIVCANGVGTSQFLKNQLEGLFPAVDIIKTCSIREYEKTP--VEVDF 466
Query: 471 VVSTSDALESRFPMLVVHPVLTDDDIIRLIR 501
++ST+ E P+ +V+P+LT+ + RL++
Sbjct: 467 IISTTSIPEKNVPIFIVNPILTETEKERLLK 497
>gi|20806823|ref|NP_621994.1| Phosphotransferase system
mannitol/fructose-specific IIA domain (Ntr-type)
[Thermoanaerobacter tengcongensis]
gi|20515289|gb|AAM23598.1| Phosphotransferase system
mannitol/fructose-specific IIA domain (Ntr-type)
[Thermoanaerobacter tengcongensis]
Length = 693
Score = 129 bits (323), Expect = 2e-28
Identities = 116/498 (23%), Positives = 233/498 (46%), Gaps = 14/498 (2%)
Query: 15 LLKLEEPETVMAIANALNQSRRKVYYHLEKINDALP-SDVPQIVSYPRVGILLTE--KQK 71
L+ EP + +A N S R + Y L+ I++ L +++PQ++ P VG+ +E + +
Sbjct: 4 LINSNEPIKISELAKLFNVSSRTIRYDLDAIDEFLKYNNLPQLIRKPNVGVKFSELLEHR 63
Query: 72 AACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILNDLNEL 131
LD ++ Y Y + ER+ + L ++ +D +TI+ L + VSR+T+++DL ++
Sbjct: 64 NKALSFLDTLSPYYYNLSQKERVNVILSELIQQRDYITINTLAEKLMVSRSTVISDLKKV 123
Query: 132 RSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLD---DIYHNGSSSFIDLFNHKL 188
+ L E+ L L++ G + G + + +LL DI + L
Sbjct: 124 KEWLEER--GLYLKALPKYGVKVVGDEKQLRRAAIELLTEAIDIDKALDIVKAPFYGRSL 181
Query: 189 SQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAYRKMRLSPE 248
+ + F + Y + I++R L + D F ++ I +A ++++L +
Sbjct: 182 GGSGQIAKLFEDIDIPYIEQCVQIAERELETIFS--DAAFSGLVI-HIAIAIKRIQLGKD 238
Query: 249 VQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFRKDRDNHLE 308
+ + + KE+ +A +A LE+ F +S+ E+G + + +L +
Sbjct: 239 IVMP-KEELKALEMTKEFAVASNIAKMLEDRFNVSIPVDEIGYITIHLLGSNVAKPKTYL 297
Query: 309 SQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFSVNPLTEH 368
++++ + + ++ + ER + + + L LL H + +YR ++ + NP+ +
Sbjct: 298 NENWIEYQLLTEKIIRNVSERIKENLLEDQQLFEGLLDHLRPTIYRLKHDLKLKNPILDE 357
Query: 369 IKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPN-KLKLVIVS 427
IK Y ELF I S+K +E+ L ++++ Y IH G + + + + K +++V
Sbjct: 358 IKTNYRELFEIVRESLKPIEEYTGRNLNEEEIGYFVIHFGAAIERKKTAISIKPNVLVVC 417
Query: 428 DEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTSDALESRFPMLVV 487
GI KLL + Q I+ + Q + V +D++VST ++ V
Sbjct: 418 STGIGTAKLLSSRLQSVFDVHIIDTI-AFHQIKEVLKDKKIDLIVSTIPLKCDEVKVVEV 476
Query: 488 HPVLTDDDIIRLIRFSKK 505
+P+LTD DI +L +F K
Sbjct: 477 NPLLTDRDIEKLSKFLAK 494
>gi|16804689|ref|NP_466174.1| similar to transcriptional
antiterminator [Listeria monocytogenes EGD-e]
gi|25514477|pir||AC1406 transcription antiterminator homolog
lmo2652 [imported] - Listeria monocytogenes (strain
EGD-e)
gi|16412152|emb|CAD00865.1| lmo2652 [Listeria monocytogenes]
Length = 688
Score = 119 bits (298), Expect = 1e-25
Identities = 120/475 (25%), Positives = 225/475 (47%), Gaps = 24/475 (5%)
Query: 31 LNQSRRKVYYHLEKINDALPS-DVPQIVSYPRVGILLTEKQKAACRLLLDEVTDYSYVMK 89
L S+R + Y +EKIN L + + I S G L E++K + +L+ V
Sbjct: 31 LGISKRTLQYDVEKINKELDNIGLDGIQSVRGQGYYLLEEEKTTIKEILENREASHKVFS 90
Query: 90 SSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILNDLNELRSELAEKEYNLQLQSTKC 149
+SER L ++V RV ID + + N+VSRNT L D+ +L+ LA K++NL+L +
Sbjct: 91 ASERRIRILFFLLVTDARVIIDTINECNEVSRNTSLQDIKQLK--LALKQFNLELAYDRK 148
Query: 150 RGYFLDGHPLSIIQ-YLYKLLDDIYHNGSSSFIDLFNHKLSQAFGASTYFSKEVLDYFHH 208
G + G SI Q +++ +++ + +DL K++ F K LD
Sbjct: 149 NGNMVLGDERSIRQFFIHYCMNNEEIATADQLLDLM--KINPMIKNQELFPK--LDMIFE 204
Query: 209 YLFISQRSLGKKINSQDGQFM-IQILPFILMAYRKMRLSPEVQTSLNSDFSLVWQRKEYE 267
L ++++ +G + + + + I I F R L+ + + + S +
Sbjct: 205 ILAVTEKKIGIRYTDEVIERIGIMIFFFKERMKRNCYLNEKEEHEVES----------FG 254
Query: 268 IAKELADELEENFQLSLDEIEVGLVAMLMLSFRKDRDNHLESQDYDDMRATLTSFLKELE 327
IA+E+ +L+++ ++ E+ + L+L + D+ D + + E E
Sbjct: 255 IAQEIYQQLQQSENFKINHAEITYLGKLLLGASRLNDDAAAEGKLD---LIVEKIIAEFE 311
Query: 328 ERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLL 387
++F ++L + LL H + YR ++ I +NPL IK Y +++ IT S++ L
Sbjct: 312 RLACVNFEDHRNLKKDLLLHLQPAYYRLKFQIEWINPLRTDIKQSYSDVYEITKKSLEPL 371
Query: 388 EKAWQIKLTDDDVAYLTIHLGGEL-RNSQQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLT 446
E + +D++AY+TI GG L R + + KL+IV +G+ +++ +Q + L
Sbjct: 372 EDLLGEAIPEDEIAYVTILFGGYLSRKNNTLVERKKLLIVCSKGVGTSRMIERQLSQLL- 430
Query: 447 NSDIEAVFTTEQYQSVSDLMHVDMVVSTSDALESRFPMLVVHPVLTDDDIIRLIR 501
+E + + L D +VST +E + P+ +V P+LT+ +L++
Sbjct: 431 GERVEILEPISIREFEKGLYAPDFIVSTLPIMEQKAPVFIVSPILTEAQKQQLMK 485
>gi|16801862|ref|NP_472130.1| similar to transcriptional
antiterminator [Listeria innocua]
gi|25514748|pir||AC1782 transcription antiterminator homolog
lin2801 [imported] - Listeria innocua (strain Clip11262)
gi|16415337|emb|CAC98027.1| lin2801 [Listeria innocua]
Length = 688
Score = 117 bits (294), Expect = 4e-25
Identities = 118/474 (24%), Positives = 227/474 (46%), Gaps = 22/474 (4%)
Query: 31 LNQSRRKVYYHLEKINDALPS-DVPQIVSYPRVGILLTEKQKAACRLLLDEVTDYSYVMK 89
L S+R + Y +EKIN L + I S G L E +K+ + +L V
Sbjct: 31 LGISKRTLQYDVEKINKELDDIGLDGIQSVRGQGYYLLEDEKSTIKEILGNREASHKVFS 90
Query: 90 SSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILNDLNELRSELAEKEYNLQLQSTKC 149
+SER L ++V RV ID + N+VSRNT L D+ +L+ LA K++NL+L +
Sbjct: 91 ASERRIRILFFLLVTDARVIIDTINACNEVSRNTSLQDIKQLK--LALKQFNLELAYDRK 148
Query: 150 RGYFLDGHPLSIIQ-YLYKLLDDIYHNGSSSFIDLFNHKLSQAFGASTYFSKEVLDYFHH 208
G + G SI Q +++ +++ + +DL K++ F LD
Sbjct: 149 NGNMVLGDERSIRQFFIHYCMNNEEIATADQLLDLM--KINPMIKNKELFPH--LDTIFE 204
Query: 209 YLFISQRSLGKKINSQDGQFMIQILPFILMAYRKMRLSPEVQTSLNSDFSLVWQRKEYEI 268
L ++++ +G + + +I+ + I++ + K R+ + + + + + + + I
Sbjct: 205 ILAVTEKKIGIRYTDE----VIERIG-IMIFFFKERMKRDCYLNEHEEHEV----ESFNI 255
Query: 269 AKELADELEENFQLSLDEIEVGLVAMLMLSFRKDRDNHLESQDYDDMRATLTSFLKELEE 328
A+E+ ++L++ ++ E+ + L+L + D+ D + + + E E
Sbjct: 256 AQEIYEQLQQKEHFKINHAEITYLGKLLLGASRLNDDAAVEGKLDII---VEKIIAEFER 312
Query: 329 RYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLE 388
++F + L + LL H + YR ++ I +NPL IK Y +++ IT S++ LE
Sbjct: 313 LACVNFEDHRSLKKDLLLHLQPAYYRLKFQIEWINPLRTDIKQSYSDVYEITKKSLEPLE 372
Query: 389 KAWQIKLTDDDVAYLTIHLGGEL-RNSQQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTN 447
K+ +D++AY+TI GG L R + + KL+IV +G+ +++ +Q + L
Sbjct: 373 DLLGEKIPEDEIAYVTILFGGYLSRKNNTLVERKKLLIVCSKGVGTSRMIERQLAQLL-G 431
Query: 448 SDIEAVFTTEQYQSVSDLMHVDMVVSTSDALESRFPMLVVHPVLTDDDIIRLIR 501
+E + + L D +VST +E + P+ +V P+LT+ +L++
Sbjct: 432 ERVEILEPISIREFEKGLYAPDFIVSTLPIMEPKAPVFIVSPILTEAQKQQLMK 485
>gi|16801878|ref|NP_472146.1| similar to transcriptional
antiterminator (BglG family) [Listeria innocua]
gi|25514749|pir||AC1784 transcription antiterminator (BglG family)
homolog lin2817 [imported] - Listeria innocua (strain
Clip11262)
gi|16415353|emb|CAC98043.1| lin2817 [Listeria innocua]
Length = 689
Score = 103 bits (258), Expect = 7e-21
Identities = 110/455 (24%), Positives = 217/455 (47%), Gaps = 58/455 (12%)
Query: 4 LDKKSYDLLFYLLKLEEPETVMAIANA-LNQSRRKVYYHLEKINDALPSDVPQIVSYPRV 62
LD++S LL LL+ P+T A +RR+V Y +KIN+ L +YP++
Sbjct: 3 LDERSNSLLKELLR--HPDTSSTNLQAKFGLTRRQVDYSFQKINNWLEEQ-----TYPKI 55
Query: 63 GILLTEKQKAACRLLLD------------EVTDYSYVMKSSERLQLSLVSIVVAKDRVTI 110
+ A R +++ E TD+ Y+ ER L ++ + + +++
Sbjct: 56 ------HRAANGRFIVEPDLFQIIGEEDGEKTDW-YIPSEKERASLIILMLTTGSEELSL 108
Query: 111 DRLMQLNDVSRNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLD 170
+ + +VS+NT+L DL ++ L +++NL+++ ++ RGY +DG + L +
Sbjct: 109 NHFISELEVSKNTVLRDLKLVQKTL--EKFNLEVKYSRMRGYLIDGDEWNQRTALIYAAE 166
Query: 171 DIYHN-GSSSFIDLFNHKLSQAFGASTYFSKEVLDYFHHYL---FISQRSLGKKINSQDG 226
I + G ++ F Q A +E L+ H+L FI +
Sbjct: 167 HIIESFGGEEYLQDF----MQVDEARIKELREKLEQVEHHLNLHFIDNK----------- 211
Query: 227 QFMIQILPFILMA-YRKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLD 285
+QILP+IL A +R+M+ + TS D++ + +EY A+ +E + ++
Sbjct: 212 ---MQILPYILEAVFRRMKKGQTITTSFLIDYNELSDTREYGAAEIFIEE-----EPNMP 263
Query: 286 EIEVGLVAMLMLSFRKDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLL 345
E E + + +L+ +L+S++ +R L L E E++ + V K+ LL +L
Sbjct: 264 EAERMYITLQLLTSNVLPKQYLKSEETHKLRLALEQVLSEFEKKACIQLVDKESLLEKLF 323
Query: 346 THCKALLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTI 405
H K YR +Y + + + + I +++ + I S+ LE+ K+ +++ ++T+
Sbjct: 324 AHIKPAYYRIKYHLTTDYSILDKIDQEFQAVHYIVKESLAPLERFIGSKVPENESIFITL 383
Query: 406 HLGGEL-RNSQQSPNKLKLVIVSDEGIAIQKLLLK 439
+GG L ++++ +LK V+V G++I +L+ K
Sbjct: 384 FIGGHLIESTEKLQTRLKAVVVCPNGLSISRLMEK 418
>gi|16804705|ref|NP_466190.1| similar to transcriptional
antiterminator (BglG family) [Listeria monocytogenes
EGD-e]
gi|25514479|pir||AC1408 transcription antiterminator (BglG family)
homolog lmo2668 [imported] - Listeria monocytogenes
(strain EGD-e)
gi|16412168|emb|CAD00881.1| lmo2668 [Listeria monocytogenes]
gi|25246090|gb|AAN72322.1| BglG-type antiterminator [Listeria
monocytogenes]
Length = 689
Score = 103 bits (257), Expect = 9e-21
Identities = 110/455 (24%), Positives = 216/455 (47%), Gaps = 58/455 (12%)
Query: 4 LDKKSYDLLFYLLKLEEPETVMAIANA-LNQSRRKVYYHLEKINDALPSDVPQIVSYPRV 62
LD++S LL LL+ P+T A +RR+V Y +KIN+ L +YP++
Sbjct: 3 LDERSNSLLKELLR--HPDTSSTNLQAKFGLTRRQVDYSFQKINNWLEEQ-----TYPKI 55
Query: 63 GILLTEKQKAACRLLLD------------EVTDYSYVMKSSERLQLSLVSIVVAKDRVTI 110
+ A R +++ E TD+ Y+ ER L ++ + + +++
Sbjct: 56 ------HRAANGRFIVEPDLFQIIGEEDGEKTDW-YIPSEKERASLIILMLTTGSEELSL 108
Query: 111 DRLMQLNDVSRNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLD 170
+ + +VS+NT+L DL ++ L ++NL+++ ++ RGY +DG + L +
Sbjct: 109 NHFISELEVSKNTVLRDLKLVQKTL--DKFNLEVKYSRMRGYLIDGDEWNQRTALIYAAE 166
Query: 171 DIYHN-GSSSFIDLFNHKLSQAFGASTYFSKEVLDYFHHYL---FISQRSLGKKINSQDG 226
I + G ++ F Q A +E L+ H+L FI +
Sbjct: 167 HIIESFGGEEYLQDF----MQVDEARIKELREKLEQVEHHLNLHFIDNK----------- 211
Query: 227 QFMIQILPFILMA-YRKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLD 285
+QILP+IL A +R+M+ + TS D++ + +EY A+ +E + ++
Sbjct: 212 ---MQILPYILEAVFRRMKKGQTITTSFLIDYNELSDTREYGAAEIFIEE-----EPNMP 263
Query: 286 EIEVGLVAMLMLSFRKDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLL 345
E E + + +L+ +L+S++ +R L L E E++ + V K+ LL +L
Sbjct: 264 EAERMYITLQLLTSNVLPKQYLKSEETHKLRLALEQVLSEFEKKACIQLVDKESLLEKLF 323
Query: 346 THCKALLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTI 405
H K YR +Y + + + + I +++ + I S+ LE+ K+ +++ ++T+
Sbjct: 324 AHIKPAYYRIKYHLTTDYSILDKIDQEFQAVHYIVKESLAPLERFIGSKVPENESIFITL 383
Query: 406 HLGGEL-RNSQQSPNKLKLVIVSDEGIAIQKLLLK 439
+GG L ++++ +LK V+V G++I +L+ K
Sbjct: 384 FIGGHLIESTEKLQTRLKAVVVCPNGLSISRLMEK 418
>gi|22990821|ref|ZP_00035615.1| hypothetical protein [Enterococcus
faecium]
Length = 697
Score = 94.4 bits (233), Expect = 5e-18
Identities = 129/562 (22%), Positives = 257/562 (44%), Gaps = 45/562 (8%)
Query: 7 KSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPS-DVPQIVSYPRVGIL 65
++ ++L ++ + P +A+ N S+R + + + N L S +P+I + G L
Sbjct: 4 RTIEILHRIMTAQYPVKAKHLASEFNVSQRTIRQEVLEANIWLSSKKLPEIRTIRNKGFL 63
Query: 66 LTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTIL 125
L +++ RL + + ER+ ++++ ++ + +++ + +S++T+
Sbjct: 64 LKLEKEKQARLETEIKDVKDGFLNRRERIFDLVLAVAYSRIPIHLNKKEEEFQISKSTLD 123
Query: 126 NDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFIDLFN 185
D+ LR+ L Y +++ S +G G SI +Y + N + D F
Sbjct: 124 EDMRRLRATLV--SYGIEIVSYGKQGLVYKGSERSIRTMIYDFI-----NQNLGMTDFFM 176
Query: 186 HKLSQAFGASTYFSKEVLDYFHHYLFISQRSL-----GKKINSQDGQFMIQILPFILMAY 240
++ +Q A F H++ + + + K + +D + QIL F L+
Sbjct: 177 NQDAQLTPAQKIF-------LHYFPLVEIKKIQEIYSNKLLKQEDDIYKKQILLFTLIWI 229
Query: 241 RKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELA--DELEENFQL-SLDEIEVGLVAMLML 297
+++R E +++N W+ E + + A D + E FQL ++ ++E + +
Sbjct: 230 QRIR-KHEFISAIN------WKNTEIKDSSFSAFIDHMIEEFQLDNVPQVERNYLRFTIE 282
Query: 298 SFR-KDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKD-LLRQLLTHCKALLYRK 355
+F +D N +E + L F +E H+ F K++ L L H AL+ R
Sbjct: 283 TFNARDISNSIEWVQAQLLTIQLIQF---VENETHVPFHLKEEALFENLYKHMAALIVRI 339
Query: 356 RYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQ 415
+ I +NPL E+I+ Y ++ + V +E+ K+ +D++A+L IH +
Sbjct: 340 KNHIQVMNPLKENIRTNYFPIYRAVTHFVPTIEEVIGGKILEDEIAFLVIHFSTIASVIK 399
Query: 416 QSPNKL-KLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVST 474
+ N + K V+V + G+A LL + + +I AV ++++ + V D + V++V ST
Sbjct: 400 RDLNYVYKSVVVCNHGMATGNLLAENLKEKFPQIEITAVLSSKEIELV-DKLDVNLVFST 458
Query: 475 SDALESRFPMLVVHPVLTDDDIIRLIRFSKKGN-----CANSNQFTNELEKTIAQYVKED 529
P+LVV P+LT+ +I+ + F K+ NS++ T EL I +KE
Sbjct: 459 FQLNYRNKPLLVVDPILTETNILVIEDFLKRNEELQRLEPNSHEST-ELFTQIIDVMKES 517
Query: 530 SERY--VLKSKIEKLIHQELLQ 549
R ++ K+EKL L+
Sbjct: 518 GGRVDRIIYGKLEKLFETNNLE 539
>gi|16802914|ref|NP_464399.1| Similar to transcriptional regulator
(antiterminator) [Listeria monocytogenes EGD-e]
gi|25517577|pir||AI1183 transcription regulator (antiterminator)
lmo0873 [imported] - Listeria monocytogenes (strain
EGD-e)
gi|16410276|emb|CAC98951.1| lmo0873 [Listeria monocytogenes]
Length = 672
Score = 90.9 bits (224), Expect = 5e-17
Identities = 127/569 (22%), Positives = 247/569 (43%), Gaps = 78/569 (13%)
Query: 4 LDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDAL-PSDVPQIVSYPRV 62
L+++ +L +L++ E+ + + I+NAL S R V Y LEKI+ L +P ++ + R
Sbjct: 3 LNQQCIQILDFLMEQEDFKNIGYISNALGCSERSVRYSLEKIDIFLHEQTLPALIRHTRK 62
Query: 63 GILLTEKQ--KAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVS 120
G+LL EK R ++T Y E Q L+ ++++++ + + ++ +S
Sbjct: 63 GVLLPEKNIVNPVVRKFKQQITPKKYRYSQEEVQQFLLLKLLLSEEVLPVTYFEEVLFIS 122
Query: 121 RNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSI-------------IQYLYK 167
R+++LN L + EL NL L G+ + G+ ++ I+ Y+
Sbjct: 123 RSSVLNHLRAIEGELFLN--NLDLSHQPRHGFLVTGNLITKTSLFARSFLRFINIREFYQ 180
Query: 168 LLDDIYHNGSSSFIDLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQ 227
LD N S +LF + L F E+L + + ++ + ++ Q
Sbjct: 181 FLDS--ENSLSKKGELFFYNL---------FELEILQEVNREAHSVEENMTRAMDEQ--- 226
Query: 228 FMIQILPFILMAYRKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQL---SL 284
L L+A + +V +DF V DEL++ ++ SL
Sbjct: 227 -----LYLTLIAILLKQHEAKVDFQFTADFVAV-------------DELDKALEIIIGSL 268
Query: 285 DEIEVGLVAMLMLSFRKDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVH-KKDLLRQ 343
+ + G +D + A +T +++ E Y + FVH D Q
Sbjct: 269 KQYQYG------------------REDEAVIEAFVTGICEKMGEIYQVDFVHGDTDFYTQ 310
Query: 344 LLTHCKALLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYL 403
+ H K ++ R R G+ NP+ E+F S++ L+ I ++ ++++L
Sbjct: 311 IKAHIKLMIRRVRAGVIIENPIFNEFMRDNREIFMRVKESLEALKPLLPISVSSQEISFL 370
Query: 404 TIHLGGEL-RNSQQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSV 462
I+ E+ RN Q K L+I+ EG+A+ K++ Q +R I+ + + +++
Sbjct: 371 AIYFASEVQRNKQTVEMKPNLLIICPEGVAVSKMIAIQLKRMFEFESIQTIGLRKFKRAM 430
Query: 463 SDLMHVDMVVSTSDALESR-FPMLVVHPVLTDDDIIRLIRFSKKGNCANSNQFTNELEKT 521
+ D V+ST D + + +L +H L +D+ L + + + Q N+ K
Sbjct: 431 --MNDFDFVISTVDLPDMQDTKVLRIHSYLQKEDMELLQKHLRMKLVKSDKQIINKFSKI 488
Query: 522 IAQYVKEDSERYVLKSKIEKLIHQELLQD 550
+A + E+++ L SK+E + + L+ D
Sbjct: 489 LA-IIGENTQITNL-SKLEFDLLEALISD 515
>gi|21282038|ref|NP_645126.1| ORFID:MW0309~hypothetical protein,
similar to transcription antiterminator BglG family
[Staphylococcus aureus subsp. aureus MW2]
gi|21203474|dbj|BAB94174.1| MW0309 [Staphylococcus aureus subsp.
aureus MW2]
Length = 651
Score = 90.9 bits (224), Expect = 5e-17
Identities = 100/498 (20%), Positives = 213/498 (42%), Gaps = 35/498 (7%)
Query: 3 ILDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRV 62
+L + ++L+ L+ + + IAN L S R + Y + I + Q+
Sbjct: 1 MLSYRQIEILYLLIHEQTFIPINTIANQLGVSPRTIQYDIAYIEQYAETYHYQVSRNKAA 60
Query: 63 GILLTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRN 122
GI +T L +T+ + K ERL + + D V+ +L Q +VSR
Sbjct: 61 GIKVTTAHATLLNELEHNLTNQIHFSK-DERLTHIALKLFETTDPVSTKQLAQDVNVSRR 119
Query: 123 TILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFID 182
TI +D+ ++++L +Y+L+L +G+ + G +D Y + FI
Sbjct: 120 TIADDIKMIQAQL--DQYHLKLNYVHNKGFNIIGE------------EDHYRKAYAHFIH 165
Query: 183 LFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQ----ILPFILM 238
+ + + A + S+ + + +R++ K +NS++ + ++ IL+
Sbjct: 166 QYMKQAAPFIEADIFNSESIA--------LVRRAIIKTLNSENYHLVQSAIDGLIYHILI 217
Query: 239 AYRKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLS 298
A +++ + +N + +Y IA ++ + LE + ++ E E+ + + +L
Sbjct: 218 AIQRLNENFSFDIPIN-EIDKWRHTNQYAIASKMIENLERSCNVTFPESEIIFITLHLLG 276
Query: 299 FRKDRDNHLESQ---DYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRK 355
+ H S +Y D+ + + + + + L L+TH K ++R
Sbjct: 277 SKMTE--HTASSITFEYHDLSQNIHELITCVSQELGIDMSKDNKLHTSLITHIKPAIHRI 334
Query: 356 RYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGEL-RNS 414
+Y + NPL + + +Y ++ S + +E+ I+ +D++ Y+TIH + R +
Sbjct: 335 KYDMLQPNPLRQEVMRRYPQIIEAVSKHISPIEQDAAIRFNEDELTYITIHFASSIERVA 394
Query: 415 QQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLM-HVDMVVS 473
+ +K+V++ GI +LL + I ++ Q + L ++D V+S
Sbjct: 395 THKQSMIKVVLLCGSGIGTSQLLKSKLNHLYPEFHIWDAYSIYQLEESRLLQDNIDYVIS 454
Query: 474 TSDALESRFPMLVVHPVL 491
T S P++ V P +
Sbjct: 455 TVPCEISAVPVIHVDPFI 472
>gi|15926034|ref|NP_373567.1| hypothetical protein, similar to
transcription antiterminator BglG family [Staphylococcus
aureus subsp. aureus N315]
gi|25507226|pir||F89798 hypothetical protein SA0321 [imported] -
Staphylococcus aureus (strain N315)
gi|13700247|dbj|BAB41545.1| SA0321 [Staphylococcus aureus subsp.
aureus N315]
Length = 651
Score = 90.5 bits (223), Expect = 7e-17
Identities = 100/498 (20%), Positives = 213/498 (42%), Gaps = 35/498 (7%)
Query: 3 ILDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRV 62
+L + ++L+ L+ + + IAN L S R + Y + I + Q+
Sbjct: 1 MLSYRQIEILYLLIHEQTFIPINTIANQLGVSPRTIQYDIAYIEQYAETYHYQVSRNKAA 60
Query: 63 GILLTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRN 122
GI +T L +T+ + K ERL + + D V+ +L Q +VSR
Sbjct: 61 GIKVTTAHATLLNELEHNLTNQIHFSK-DERLTHIALKLFETTDPVSTKQLAQDVNVSRR 119
Query: 123 TILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFID 182
TI +D+ ++++L +Y+L+L +G+ + G +D Y + FI
Sbjct: 120 TIADDIKMIQAQL--DQYHLKLNYVHNKGFNVIGE------------EDHYRKAYAHFIH 165
Query: 183 LFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQ----ILPFILM 238
+ + + A + S+ + + +R++ K +NS++ + ++ IL+
Sbjct: 166 QYMKQAAPFIEADIFNSESIA--------LVRRAIIKTLNSENYHLVQSAIDGLIYHILI 217
Query: 239 AYRKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLS 298
A +++ + +N + +Y IA ++ + LE + ++ E E+ + + +L
Sbjct: 218 AIQRLNENFSFDIPIN-EIDKWRHTNQYAIASKMIENLERSCNVTFPESEIIFITLHLLG 276
Query: 299 FRKDRDNHLESQ---DYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRK 355
+ H S +Y D+ + + + + + L L+TH K ++R
Sbjct: 277 SKMTE--HTASSITFEYHDLSQNIHELITCVSQELGIDMSKDNKLHTSLITHIKPAIHRI 334
Query: 356 RYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGEL-RNS 414
+Y + NPL + + +Y ++ S + +E+ I+ +D++ Y+TIH + R +
Sbjct: 335 KYDMLQPNPLRQEVMRRYPQIIEAVSKHISPIEQDAAIRFNEDELTYITIHFASSIERVA 394
Query: 415 QQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLM-HVDMVVS 473
+ +K+V++ GI +LL + I ++ Q + L ++D V+S
Sbjct: 395 THKQSMIKVVLLCGSGIGTSQLLKSKLNHLYPEFHIWDAYSIYQLEESRLLQDNIDYVIS 454
Query: 474 TSDALESRFPMLVVHPVL 491
T S P++ V P +
Sbjct: 455 TVPCEISAVPVIHVDPFI 472
>gi|21911216|ref|NP_665484.1| putative transcriptional regulator
[Streptococcus pyogenes MGAS315]
gi|28896594|ref|NP_802944.1| conserved hypothetical protein
[Streptococcus pyogenes SSI-1]
gi|21905428|gb|AAM80287.1| putative transcriptional regulator
[Streptococcus pyogenes MGAS315]
gi|28811848|dbj|BAC64777.1| conserved hypothetical protein
[Streptococcus pyogenes SSI-1]
Length = 686
Score = 90.5 bits (223), Expect = 7e-17
Identities = 114/438 (26%), Positives = 194/438 (44%), Gaps = 39/438 (8%)
Query: 8 SYDLL--FYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRVGIL 65
S++L+ + L + ++ A + L S+R + + KIND L +++ R +
Sbjct: 3 SHELIRKYQLFSKYKGHSLEAFESILKTSKRHILADIAKINDTLSLYQLPLIALDRQLVY 62
Query: 66 ---LTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRN 122
LTEK +L + DY + ERL + ++ I++AK+ ++I+ L L +SRN
Sbjct: 63 PPDLTEKD--LLNRMLPTLDDYLF---QDERLDMIIIYIMMAKEFISINHLESLLRLSRN 117
Query: 123 TILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFI- 181
+++ DLN +R + + + + L + GYF +G PL++ + L + + S ++
Sbjct: 118 SVIADLNLVRDRV--QAFQVTLAYNRQDGYFFEGEPLALRRLLESAVSSLLQVTSGPWVF 175
Query: 182 DLFNHKLSQAFGASTYFSK-EVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAY 240
H+L + + E L +H FIS++ I F L+A+
Sbjct: 176 SYLLHELGLPYQTKVMAATLEELSRENHLTFISEK------------LRDLIYFFCLLAH 223
Query: 241 RKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFR 300
R S V+ F L E + D+L NF SL E + + + L+ +
Sbjct: 224 RP--FSRNVRAEAVDTFPLASPAVE-----TMVDQLLVNFP-SLTEEKYLVQSRLLGCIQ 275
Query: 301 KDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIF 360
D + + YD M + S + L +L + L +H YR Y I
Sbjct: 276 GDLELVFQQPIYDIMEEIINS----VAVNTGLSITDTPELRQNLYSHLLPAYYRLYYDID 331
Query: 361 SVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSP-N 419
NPL E IK YE LF + S+ LEK + +D+VAY TIH G L+ ++ P N
Sbjct: 332 LTNPLKEQIKQDYESLFYLVKRSLSPLEKQLGKLVNEDEVAYFTIHFGRWLQAPKKRPSN 391
Query: 420 KLKLVIVSDEGIAIQKLL 437
+L + V GI+ +L
Sbjct: 392 QLVALSVCPNGISSSLML 409
>gi|22991304|ref|ZP_00036039.1| hypothetical protein [Enterococcus
faecium]
Length = 661
Score = 90.1 bits (222), Expect = 9e-17
Identities = 128/570 (22%), Positives = 262/570 (45%), Gaps = 50/570 (8%)
Query: 2 IILDKKSYDLLFYLLK-LEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYP 60
+I+ +K LL YL+ +E T +A+ L S R + +L++I + + + +I++ P
Sbjct: 1 MIMKQKEKLLLRYLIDHKKEYVTSQRLASELLLSDRTIRNYLQRIKELVEKNGGKIIAKP 60
Query: 61 RVGILLTEKQKAACRLLLDE---VTDYSY----VMKSSERLQLSLVSIVVAKDRVTIDRL 113
G L Q+ L L V Y+ +S +R + L +++ + +D L
Sbjct: 61 GYGYQLHILQRLTFDLFLSRQEIVPGYAREPQGFYESEDRQKYILNQLLLEDAILFMDDL 120
Query: 114 MQLNDVSRNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIY 173
+ +SR+++ D+ E++ L Y+L++ S +G +++G + + ++D +
Sbjct: 121 AEELYISRSSLTKDMQEIKERLI--PYSLKIVSKHGQGTWIEGEERNRRHF---IMDTFF 175
Query: 174 HNGSSSFIDLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQIL 233
N + + L + G S +F + + + I + K+ D F+IQ L
Sbjct: 176 GNH-------YGNSLKEYLGQSRFFPD--ISFEELVIIILDETREAKLKVSD--FIIQNL 224
Query: 234 PFIL-MAYRKMRLSPEV-QTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGL 291
L + +++R E+ + + + S +R EY++A+ + +E +S E E+
Sbjct: 225 TLHLALGIKRLREGFEIKELGIEQEVS---KRVEYQVAQRIVQRIEVIAGVSFPEEEIAY 281
Query: 292 VAMLMLSFRKDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKAL 351
+ + +++ + NH E+Q+ ++ L LK L + +H V L LL H +
Sbjct: 282 LTLHLMA----KSNHKENQNDQELSKELAKVLKRLSQEFHFSLVEDLQLFNGLLDHLSPM 337
Query: 352 LYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGEL 411
+ R GI NPLTE IK + ++F + + +D+ AYL +HL L
Sbjct: 338 MIRLSRGIRIENPLTEEIKKENPKVFDAVKRHFSNMPALKNYTINEDEWAYLALHLMAAL 397
Query: 412 RNSQQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQ-SVSDLMHVDM 470
+++ +KL +I+ G +LL + +I V Y+ + + L +D+
Sbjct: 398 E-KERAAHKLHALIICATGYGSAQLLKNRVVSEF-GKNITVVSVKGYYEINETTLKGIDL 455
Query: 471 VVSTSD--ALESRFPMLVVHPVLTDDDIIRLIRFSKKGNCANSNQ-----FTNELEKTIA 523
++S+ D + + P+L V L +DD+ ++ + + +S+ F+ + +K I
Sbjct: 456 IISSIDLSTMFFKIPVLHVSIFLNEDDVRKIRKVVGESIPYHSSDRPIPAFSLQQKKQI- 514
Query: 524 QYVKEDSER----YVLKSKIEKLIHQELLQ 549
Y ++ SE+ Y + K E+++H +LLQ
Sbjct: 515 -YTEQLSEKFFKTYTYEPKKEEILH-DLLQ 542
>gi|16802447|ref|NP_463932.1| similar to transcriptional
antiterminator (BglG family) [Listeria monocytogenes
EGD-e]
gi|25514288|pir||AC1125 transcription antiterminator (BglG family)
homolog lmo0402 [imported] - Listeria monocytogenes
(strain EGD-e)
gi|16409780|emb|CAC98481.1| lmo0402 [Listeria monocytogenes]
Length = 644
Score = 90.1 bits (222), Expect = 9e-17
Identities = 105/470 (22%), Positives = 207/470 (43%), Gaps = 28/470 (5%)
Query: 83 DYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILNDLNELRSELAEKEYNL 142
DY + ER++ + ++ + D + ++ L SR TI ND+ ++R +A Y+L
Sbjct: 89 DYFDLDNPEERVKYEIFLLLSSADYIKLEDLADTIFASRATISNDMKQVRKVIA--SYDL 146
Query: 143 QLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFIDLFNHKLSQAFGASTYFSKEV 202
L S G + G + L L+ N S+++ F Q + V
Sbjct: 147 TLVSKPGSGVKIVGDEEKMRYALTALIAS--KNAPESYLESFFEWHKQKDKLQKLMTA-V 203
Query: 203 LDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAYRKMRLSPEVQTSLNSDFSLVWQ 262
DYF I D + + +L +++ ++ ++ +D S
Sbjct: 204 TDYF----------FATNIRFTD-EALQNLLLHMMILVERIEFGHTLEQFELTDVS---- 248
Query: 263 RKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFRKDRDNHLESQDYDDMRATLTSF 322
+E IA +LA LE F++ + + + + + + S R E ++DD A +
Sbjct: 249 EEEILIAAKLATILESLFEIEIADADKNYLLLQIASKRILNVEDKEISEFDDY-AYIEGL 307
Query: 323 LKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFSVNPLTEHIKDKYEELFAITSS 382
L +E Y H L + L+ H ++LYR +Y + NP+TEHIK Y + IT
Sbjct: 308 LNRIESHYFYHLQDDMQLKKDLVAHIHSMLYRVKYHMTVKNPMTEHIKRYYPLAYEITLD 367
Query: 383 SVKLLEKAWQIKLTDDDVAYLTIHLGGEL-RNSQQSPNKLK-LVIVSDEGIAIQKLLLKQ 440
+V+ L+K + + +++AYL +H+G L RN Q S + K +IV G +++ +
Sbjct: 368 AVESLKKDYPYDINQNELAYLALHIGASLERNYQISYYRHKSALIVCGSGFGTARIVEAK 427
Query: 441 CQRYLTNSDIEAVFTTEQYQSVSDLMHV--DMVVSTSDALESRFPMLVVHPVLTDDDIIR 498
+ ++N DI V + ++Y +H+ D+++ST E P++ + + T++++
Sbjct: 428 VKSAVSNLDITKVVSIQEYNR---FIHIEEDIILSTVRIPEKNKPVIKISNIPTNEELKM 484
Query: 499 LIRFSKKGNCANSNQFTNELEKTIAQYVKEDSERYVLKSKIEKLIHQELL 548
L ++ N +N + ++ +L+ ++ L Q ++
Sbjct: 485 LGAIIQEQTDPNRGFLSNFFTADFFERSSMTNKTAILEEMVDSLRQQNIV 534
>gi|1480429|gb|AAC44464.1| putative transcriptional regulator
[Geobacillus stearothermophilus]
Length = 697
Score = 90.1 bits (222), Expect = 9e-17
Identities = 120/528 (22%), Positives = 237/528 (44%), Gaps = 54/528 (10%)
Query: 11 LLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRVGILLT--E 68
+L LL +E TV +A L+ S R ++ L+ I L Q+V VGI + E
Sbjct: 10 ILDILLSNDEGTTVGELAEQLDVSNRTIHRDLKGIERILKDYGLQLVKKAGVGIRVIGEE 69
Query: 69 KQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILNDL 128
K+K L L ++ Y ER + L++++ A + V + L +V+ TI +DL
Sbjct: 70 KKKKELALHLFHLSHKEYT--PEERQVIILIALLEATEPVKLLSLANDLNVTVATISHDL 127
Query: 129 NELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFIDLFNHKL 188
+++ +++ EK Y L L + G + G + + + +LL +H F+ L +
Sbjct: 128 DKI-NQMIEK-YGLSLIRKRGYGVEIAGSESAKRRMMSELL--FHHVDEHEFLSLMKESI 183
Query: 189 SQAFGASTYFSKEVLDYFHHYLFISQRSLG----KKINSQDGQF--MIQILPFIL----- 237
K+ +D + ++++ LG KK+ + + Q + + LPF +
Sbjct: 184 ----------QKKSIDKLNT---VTEKLLGLIDKKKLVTIEQQIERIKEELPFTIADSSY 230
Query: 238 ------MAYRKMRLSPEVQTSLNSDF-SLVWQRKEYEIAKELADELEENFQLSLDEIEVG 290
+A R+S + + + + KEYE A+++A LE F++++ + E+G
Sbjct: 231 IALVVHLALAIERISQGESINFDQQYLETIQTTKEYETAEKIARSLEHAFRITIPKEEIG 290
Query: 291 LVAM-LMLSFRKDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCK 349
+ M LM + +DR ++ + ++ ++ + H+ + L L+ H K
Sbjct: 291 YITMHLMGAKLRDRQGYMLEEASFEVGIKAQELIRFVSAELHVDITNDYTLYEDLVVHLK 350
Query: 350 ALLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGG 409
LYR ++ + NPL E I Y ELFA+ VK + + + +++ YL +H
Sbjct: 351 PALYRIQHNMGIANPLLEKIVQDYPELFAVLEKGVKQVFP--DVTVPKEEIGYLVLHFAA 408
Query: 410 ELRNSQQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSV----SDL 465
L ++ L+ +++ G+ K+L + ++ +I + EQ +D+
Sbjct: 409 ALLREKKG---LRALVICSSGLGTAKILATRLKK-----EIPDIVHMEQISVFELRNTDV 460
Query: 466 MHVDMVVSTSDALESRFPMLVVHPVLTDDDIIRLIRFSKKGNCANSNQ 513
D++VST P VV P+L +++++ + +F K N + +
Sbjct: 461 TRYDLIVSTVPIDGLAKPYFVVSPMLREEEVLSIKQFLKSRNAVSRKE 508
>gi|15923322|ref|NP_370856.1| hypothetical protein [Staphylococcus
aureus subsp. aureus Mu50]
gi|14246100|dbj|BAB56494.1| hypothetical protein [Staphylococcus
aureus subsp. aureus Mu50]
Length = 651
Score = 90.1 bits (222), Expect = 9e-17
Identities = 100/498 (20%), Positives = 213/498 (42%), Gaps = 35/498 (7%)
Query: 3 ILDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRV 62
+L + ++L+ L+ + + IAN L S R + Y + I + Q+
Sbjct: 1 MLSYRQIEILYLLIHEQTFIPINTIANQLGVSPRTIQYDIAYIEQYAETYHYQVSRNKAA 60
Query: 63 GILLTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRN 122
GI +T L +T+ + K ERL + + D V+ +L Q +VSR
Sbjct: 61 GIKVTTAHATLLNELEHNLTNQIHFSK-DERLTHIALKLFETTDPVSTKQLAQDVNVSRR 119
Query: 123 TILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFID 182
TI +D+ ++++L +Y+L+L +G+ + G +D Y + FI
Sbjct: 120 TIADDIKMIQAQL--DQYHLKLNYVHNKGFNVIGE------------EDHYRKAYAHFIH 165
Query: 183 LFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQ----ILPFILM 238
+ + + A + S+ + + +R++ K +NS++ + ++ IL+
Sbjct: 166 QYMKQAAPFIEADIFNSESIA--------LVRRAIIKTLNSENYHLVQSAIDGLIYHILI 217
Query: 239 AYRKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLS 298
A +++ + +N + +Y IA ++ + LE + ++ E E+ + + +L
Sbjct: 218 AIQRLNENFSFDIPIN-EIDKWRHTNQYAIASKMIENLERSCNVTFPESEIIFITLHLLG 276
Query: 299 FRKDRDNHLESQ---DYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRK 355
+ H S +Y D+ + + + + + L L+TH K ++R
Sbjct: 277 SKMTE--HTASSITFEYHDLSQNIHELITCVSQELGIDMSKDNKLHTSLITHIKPAIHRI 334
Query: 356 RYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGEL-RNS 414
+Y + NPL + + +Y ++ S + +E+ I+ +D++ Y+TIH + R +
Sbjct: 335 KYDMLQPNPLRQEVMRRYPQIIEAVSKHISPIEQDAAIRFNEDELTYITIHFASSIERVA 394
Query: 415 QQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLM-HVDMVVS 473
+ +K+V++ GI +LL + I ++ Q + L ++D V+S
Sbjct: 395 THKQSMIKVVLLCGSGIGTSQLLKSKLNHLYPEFHIWDAYSIYQLEESRLLQDNIDYVIS 454
Query: 474 TSDALESRFPMLVVHPVL 491
T S P++ V P +
Sbjct: 455 TVPCEISAVPVIHVDPFI 472
>gi|15675752|ref|NP_269926.1| conserved hypothetical protein
[Streptococcus pyogenes]
gi|13622973|gb|AAK34647.1| conserved hypothetical protein
[Streptococcus pyogenes M1 GAS]
Length = 686
Score = 89.4 bits (220), Expect = 2e-16
Identities = 116/441 (26%), Positives = 196/441 (44%), Gaps = 45/441 (10%)
Query: 8 SYDLL--FYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRVGIL 65
S++L+ + L + ++ A + L S+R + + KIND L +++ R +
Sbjct: 3 SHELIRNYQLFSKYKGHSLEAFESILKASKRHILADIAKINDTLSLYQLPLIALDRQLVY 62
Query: 66 ---LTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRN 122
LTEK +L + DY + ERL + ++ I++AK+ ++I+ L L +SRN
Sbjct: 63 PPDLTEKD--LLNRMLPTLDDYLF---QDERLDMIIIYIMMAKEFISINHLESLLRLSRN 117
Query: 123 TILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFI- 181
+++ DLN +R + + + + L + GYF +G PL++ + L + + S ++
Sbjct: 118 SVIADLNLVRDRV--QAFQVTLAYNRQDGYFFEGEPLALRRLLESAVSSLLQVTSGPWVF 175
Query: 182 DLFNHKL----SQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFIL 237
H+L + A+T E L +H FIS++ I F L
Sbjct: 176 SYLLHELGLPDQKKVMAATL---EELSRENHLTFISEK------------LRDLIYFFCL 220
Query: 238 MAYRKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLML 297
+A+R S V+ F L E + D+L NF SL E + + + L+
Sbjct: 221 LAHRP--FSRNVRAEAVDTFPLASPAVE-----TMVDQLLVNFP-SLTEEKYLVQSRLLG 272
Query: 298 SFRKDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRY 357
+ D + + YD M + S + L +L + L +H YR Y
Sbjct: 273 CIQGDLELVFQQPIYDIMEEIINS----VAVNTGLSITDTPELRQNLYSHLLPAYYRLYY 328
Query: 358 GIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQS 417
I NPL E IK YE LF + S+ LEK + +D+VAY TIH G L+ ++
Sbjct: 329 DINLTNPLKEQIKQDYESLFYLVKRSLSPLEKQLGKSVNEDEVAYFTIHFGRWLQAPKKR 388
Query: 418 P-NKLKLVIVSDEGIAIQKLL 437
P N+L + V GI+ +L
Sbjct: 389 PSNQLVALSVCPNGISSSLML 409
>gi|16799502|ref|NP_469770.1| similar to transcriptional
antiterminator (BglG family) [Listeria innocua]
gi|25514031|pir||AB1486 transcription antiterminator (BglG family)
homolog lin0425 [imported] - Listeria innocua (strain
Clip11262)
gi|16412854|emb|CAC95658.1| lin0425 [Listeria innocua]
Length = 644
Score = 89.0 bits (219), Expect = 2e-16
Identities = 100/419 (23%), Positives = 189/419 (44%), Gaps = 28/419 (6%)
Query: 82 TDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILNDLNELRSELAEKEYN 141
TDY + ER++ + ++ + D + ++ L SR TI ND+ ++R+ +A Y+
Sbjct: 88 TDYFDLDNPEERVKYEIFLLLSSADYIKLEDLADTLFASRATISNDMKQVRTVIA--SYD 145
Query: 142 LQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFIDLFNHKLSQAFGASTYFSKE 201
L L S G + G + L L+ S+++ F Q S
Sbjct: 146 LTLVSKPGCGVKIVGEEEKMRYTLTALIAS--KKAPESYLETFFEWHKQKEKLQKLMSA- 202
Query: 202 VLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAYRKMRLSPEVQTSLNSDFSLVW 261
V DYF I D + + +L +++ ++ L ++ +D S
Sbjct: 203 VTDYF----------FATNIRFTD-EALQNLLLHMMILVERIELGHSLEQFELTDVS--- 248
Query: 262 QRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFRKDRDNHLESQDYDDMRATLTS 321
+E IA LA L F++ + E + + + + S R E ++DD A +
Sbjct: 249 -EEEITIANNLAGILASLFEIEISEGDKNYLLLQIASKRILNVEDKEISEFDDY-AYIEG 306
Query: 322 FLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFSVNPLTEHIKDKYEELFAITS 381
L +E +Y L + L+ H ++LYR +Y + NP+TEHIK Y + IT
Sbjct: 307 MLNRIESQYFYRLQDDLQLKKDLIAHIHSMLYRVKYHMTVKNPMTEHIKRYYPLAYEITL 366
Query: 382 SSVKLLEKAWQIKLTDDDVAYLTIHLGGEL-RNSQQSPNKLK-LVIVSDEGIAIQKLLLK 439
+V+ L+K + + +++AYL +H+G L RN Q S + K +IV G +++
Sbjct: 367 DAVESLKKDYPYDINQNELAYLALHIGASLERNYQISYYRHKSALIVCGSGFGTARIVEA 426
Query: 440 QCQRYLTNSDIEAVFTTEQYQSVSDLMHV--DMVVSTSDALESRFPMLVVHPVLTDDDI 496
+ + ++N DI V + ++Y +H+ D+++ST E P++ + + T++++
Sbjct: 427 KVKSAVSNLDITKVVSIQEYNR---FIHIEEDIILSTVRIPEKNKPVIKISNIPTNEEL 482
>gi|16799945|ref|NP_470213.1| Similar to transcriptional regulator
(antiterminator) [Listeria innocua]
gi|25516866|pir||AG1541 Similar to transcription regulator
(antiterminator) lin0871 [imported] - Listeria innocua
(strain Clip11262)
gi|16413322|emb|CAC96103.1| lin0871 [Listeria innocua]
Length = 672
Score = 88.2 bits (217), Expect = 4e-16
Identities = 129/567 (22%), Positives = 245/567 (42%), Gaps = 74/567 (13%)
Query: 4 LDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDAL-PSDVPQIVSYPRV 62
L+++ +L +L++ E+ + + I+NAL S R V Y LEKI+ L +P ++ + R
Sbjct: 3 LNQQCIQILDFLMEQEDFKNIGYISNALGCSERSVRYSLEKIDIFLHEQTLPALIRHTRK 62
Query: 63 GILLTEKQ--KAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVS 120
G+LL EK ++T Y E Q L+ ++++++ + + ++ +S
Sbjct: 63 GVLLPEKNIINPVVSKFKQQITPKKYRYSQEEVQQFLLLKLLLSEEVLPVTYFEEVLFIS 122
Query: 121 RNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSI-------------IQYLYK 167
R+++LN L + EL NL L G+ + G+ ++ I+ Y+
Sbjct: 123 RSSVLNHLRAIEGELFLN--NLDLSHQPRHGFLVTGNLITKTSLFARSFLRFINIREFYQ 180
Query: 168 LLDDIYHNGSSSFIDLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQ 227
LD N S +LF + L F EVL + + ++ + ++ Q
Sbjct: 181 FLDS--ENSLSKKGELFFYNL---------FEMEVLQEVNREAHSVEENMTRAMDEQ--- 226
Query: 228 FMIQILPFILMAYRKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEI 287
L L+A + +V +DF+ + EL D+ E SL +
Sbjct: 227 -----LYLTLIAILLKQHETKVDFKFTADFA---------VTDEL-DKALETIIGSLKQY 271
Query: 288 EVGLVAMLMLSFRKDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVH-KKDLLRQLLT 346
+ G S+D + A + +++ E Y + FVH D Q+
Sbjct: 272 QYG------------------SEDEAIIEAFVRGICEKMGEIYQVDFVHGDTDFFTQMKA 313
Query: 347 HCKALLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIH 406
H K ++ R R G+ NP+ E+F S++ L+ I ++ ++++L I+
Sbjct: 314 HIKLMIRRVRAGVIIENPIFNEFMRDNREIFMRVKESLEALKPVLPISVSSQEISFLAIY 373
Query: 407 LGGEL-RNSQQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDL 465
E+ RN Q K L+I+ EG+A+ ++ Q +R + E+V T + D+
Sbjct: 374 FASEVQRNKQTVEMKPNLLIICPEGVAVSNMIAIQLKRMF---EFESVQTIGLRKFKRDM 430
Query: 466 MH-VDMVVSTSDALESR-FPMLVVHPVLTDDDIIRLIRFSKKGNCANSNQFTNELEKTIA 523
M D V+ST D + + +L ++ L +D+ L + + + Q N+ K +A
Sbjct: 431 MKDFDFVISTVDLPDMQDAKVLRINSYLQKEDMELLQKHLRMKLVKSDKQIINKFSKILA 490
Query: 524 QYVKEDSERYVLKSKIEKLIHQELLQD 550
+ E+++ L SK+E + + L+ D
Sbjct: 491 -IIAENTQINNL-SKLEFDLLEALISD 515
>gi|19746863|ref|NP_607999.1| conserved hypothetical protein
[Streptococcus pyogenes MGAS8232]
gi|19749104|gb|AAL98498.1| conserved hypothetical protein
[Streptococcus pyogenes MGAS8232]
Length = 686
Score = 87.4 bits (215), Expect = 7e-16
Identities = 114/438 (26%), Positives = 192/438 (43%), Gaps = 39/438 (8%)
Query: 8 SYDLL--FYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRVGIL 65
S++L+ + L + ++ A + L S+R + + KIND L +++ R +
Sbjct: 3 SHELIRNYQLFSKYKGHSLEAFESILKTSKRHILADIAKINDTLSLYQLPLIALDRQLVY 62
Query: 66 ---LTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRN 122
LTEK +L + DY + ERL + ++ I++AK+ ++I+ L L +SRN
Sbjct: 63 PPDLTEKD--LLNRMLPTLDDYLF---QDERLDMIIIYIMMAKEFISINHLESLLRLSRN 117
Query: 123 TILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFI- 181
+++ DLN +R + + + + L + GYF +G PL++ + L + S ++
Sbjct: 118 SVIADLNLVRDRV--QAFQVTLAYNRQDGYFFEGEPLALRRLLESAASSLLQVTSGPWVF 175
Query: 182 DLFNHKLSQAFGASTYFSK-EVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAY 240
H+L + E L +H FIS++ I F L+A+
Sbjct: 176 SYLLHELGLPDQTKEMAATLEELSRENHLTFISEK------------LRDLIYFFCLLAH 223
Query: 241 RKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFR 300
R S V+ F L E + D+L NF SL E + + + L+ +
Sbjct: 224 RP--FSRNVRAEAVDTFPLASPAVE-----TMVDQLLVNFP-SLTEEKYLVQSRLLGCIQ 275
Query: 301 KDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIF 360
D + + YD M + S + L +L + L +H YR Y I
Sbjct: 276 GDLELVFQQPIYDIMEEIINS----VAVNTGLSITDTPELRQNLYSHLLPAYYRLYYDIN 331
Query: 361 SVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSP-N 419
NPL E IK YE LF + S+ LEK + +D+VAY TIH G L+ ++ P N
Sbjct: 332 LTNPLKEQIKQDYESLFYLVKRSLSPLEKQLGKLVNEDEVAYFTIHFGRWLQAPKKRPSN 391
Query: 420 KLKLVIVSDEGIAIQKLL 437
+L + V GI+ +L
Sbjct: 392 QLVALSVCPNGISSSLML 409
>gi|21281949|ref|NP_645035.1| ORFID:MW0220~hypothetical protein,
similar to BglG antiterminator family [Staphylococcus
aureus subsp. aureus MW2]
gi|21203384|dbj|BAB94085.1| MW0220 [Staphylococcus aureus subsp.
aureus MW2]
Length = 698
Score = 87.0 bits (214), Expect = 7e-16
Identities = 101/455 (22%), Positives = 211/455 (46%), Gaps = 33/455 (7%)
Query: 34 SRRKVYYHLEKINDALPSD-VPQIVSYPRVGILLTEKQKAACRLLLDE--VTDYSYVMKS 90
SRR++ Y ++KIN L + P++ + +++ + + + E + + + V+ S
Sbjct: 30 SRRQLGYRIQKINLWLEQEGYPKLERTSQGNFIVSSEIMTLFKRDVSEQQMLNGNNVIFS 89
Query: 91 SERLQLSLVSIVVAKDR-VTIDRLMQLNDVSRNTILNDLNELRSELAEKEYNLQLQSTKC 149
E + L+ ++ +K+ ++++ VS+NT+++D+N ++ +L + + L L+ ++
Sbjct: 90 IETRRYYLMLMLFSKENAMSLNHFSIDLQVSKNTVIHDINHVKEQL--ENHGLSLKYSRK 147
Query: 150 RGYFLDGHPLSIIQYLYKLLDDIYHNG--SSSFIDLFNHKLSQAFGASTYFSKEVLDYFH 207
GY + G + ++ KL+D ++ S + N L + K+ +
Sbjct: 148 HGYEIVGDEFEVRRFFIKLIDQRLNHDITKSEVLKALNLTLE-----DIAYQKDKIKQVE 202
Query: 208 HYLFISQRSLGKKINSQDGQFMIQILPFILMAYRKMRLSPEVQTSLNSDFSLVWQRKEYE 267
F+ R + K ++S LP++L R+ S V LN ++ + KEY+
Sbjct: 203 Q--FLKSRFIDKSLSS---------LPYVLCVIRRRIQSGHVMNPLNINYQYLRDTKEYQ 251
Query: 268 IAKELADELEENFQLSLDEIEVGLVAMLMLSFRKDRDNHLESQDYDDMRATLTSFLKELE 327
A E+ +LE + L E E + + +LS + ES + ++ + + E
Sbjct: 252 -ATEIMTQLEPD----LPEAEKLYLTLHLLSTSVQWTDLQESDNISNLTMAIAQMIHHFE 306
Query: 328 ERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLL 387
+ ++ K+ L +QLL H YR +Y + + L ++ Y+ LF + S + L
Sbjct: 307 QITFINIEDKEKLSQQLLLHLTPAFYRIKYNLTDRDELINPLQGNYQSLFHMVKQSCQSL 366
Query: 388 EKAWQIKLTDDDVAYLTIHLGGELRNSQQS-PNKLKLVIVSDEGIAIQKLLLKQCQRYLT 446
+ + L D+++AYLT+ GG LR ++ K+K +IV +G ++ +++L + +
Sbjct: 367 TEYFGKSLPDNEIAYLTMLFGGSLRRQDENFDGKIKAIIVCTQGTSVSQMMLYELRNLFP 426
Query: 447 NS---DIEAVFTTEQYQSVSDLMHVDMVVSTSDAL 478
D ++ T E Y D++ M V T L
Sbjct: 427 EIIFLDAISLRTFENYTLDYDIVFSPMFVLTHKKL 461
>gi|15923234|ref|NP_370768.1| hypothetical protein [Staphylococcus
aureus subsp. aureus Mu50]
gi|15925947|ref|NP_373480.1| hypothetical protein, similar to BglG
antiterminator family [Staphylococcus aureus subsp.
aureus N315]
gi|25507483|pir||G89787 hypothetical protein SA0235 [imported] -
Staphylococcus aureus (strain N315)
gi|13700159|dbj|BAB41458.1| SA0235 [Staphylococcus aureus subsp.
aureus N315]
gi|14246011|dbj|BAB56406.1| hypothetical protein [Staphylococcus
aureus subsp. aureus Mu50]
Length = 698
Score = 87.0 bits (214), Expect = 9e-16
Identities = 100/454 (22%), Positives = 211/454 (46%), Gaps = 31/454 (6%)
Query: 34 SRRKVYYHLEKINDALPSD-VPQIVSYPRVGILLTEKQKAACRLLLDE--VTDYSYVMKS 90
SRR++ Y ++KIN L + P++ + +++ + + + E + + + V+ S
Sbjct: 30 SRRQLGYRIQKINLWLEQEGYPKLERTSQGNFIVSSEIMTLFKRDVSEQQMLNGNNVIFS 89
Query: 91 SERLQLSLVSIVVAKDR-VTIDRLMQLNDVSRNTILNDLNELRSELAEKEYNLQLQSTKC 149
E + L+ ++ +K+ ++++ VS+NT+++D+N ++ +L +++ L L+ ++
Sbjct: 90 IETRRYYLMLMLFSKENAMSLNHFSIDLQVSKNTVIHDINHVKEQL--EDHGLSLKYSRK 147
Query: 150 RGYFLDGHPLSIIQYLYKLLDD-IYHNGSSSFIDLFNHKLSQAFGASTYFSKEVLDYFHH 208
GY + G + ++ KL+D + H+ + S + L+ F Y ++
Sbjct: 148 HGYEIVGDEFEVRRFFIKLIDQRLNHDITKSEV---LKALNLTFEDIAYQKDKIKQVEQ- 203
Query: 209 YLFISQRSLGKKINSQDGQFMIQILPFILMAYRKMRLSPEVQTSLNSDFSLVWQRKEYEI 268
F+ R + K ++S LP++L R+ S V LN ++ + KEY+
Sbjct: 204 --FLKSRFIDKSLSS---------LPYVLCVIRRRIQSGHVMNPLNINYQYLRDTKEYQ- 251
Query: 269 AKELADELEENFQLSLDEIEVGLVAMLMLSFRKDRDNHLESQDYDDMRATLTSFLKELEE 328
A E+ + L E E + + +LS + ES + ++ + + E+
Sbjct: 252 ----ATEIMTQHEPDLPEAEKLYLTLHLLSTSVQWTDLQESDNISNLTMAIAQMIHHFEQ 307
Query: 329 RYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLE 388
++ K+ L +QLL H YR +Y + + L ++ Y+ LF + S + L
Sbjct: 308 ITFINIEDKEKLSQQLLLHLTPAFYRIKYNLTDRDELINPLQGNYQSLFHMVKQSCQSLT 367
Query: 389 KAWQIKLTDDDVAYLTIHLGGELRNSQQS-PNKLKLVIVSDEGIAIQKLLLKQCQRYLTN 447
+ + L D+++AYLT+ GG LR ++ K+K +IV +G ++ +++L + +
Sbjct: 368 EYFGKSLPDNEIAYLTMLFGGSLRRQDENFDGKIKAIIVCTQGTSVSQMMLYELRNLFPE 427
Query: 448 S---DIEAVFTTEQYQSVSDLMHVDMVVSTSDAL 478
D ++ T E Y D++ M V T L
Sbjct: 428 IIFLDAISLRTFENYTLDYDIVFSPMFVLTHKKL 461
>gi|23100057|ref|NP_693523.1| transcriptional antiterminator
[Oceanobacillus iheyensis HTE831]
gi|22778288|dbj|BAC14558.1| transcriptional antiterminator (BglG
family) [Oceanobacillus iheyensis HTE831]
Length = 696
Score = 84.3 bits (207), Expect = 5e-15
Identities = 113/510 (22%), Positives = 226/510 (44%), Gaps = 39/510 (7%)
Query: 4 LDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRVG 63
L + +L LL+ E+ +V IA+ L+ S R ++ ++KI L +V G
Sbjct: 3 LSSRERHILKILLEAEKHMSVKEIADQLDVSVRTIHREIKKIEKVLGDYQLNLVKKTGTG 62
Query: 64 ILL--TEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSR 121
I + + + K R ++E++ S + ER + L +++ ++ V + L +V+
Sbjct: 63 ISIQGSTENKKVFRQAMEELS--SSELTEEERQVILLYTLLQFREPVKLFHLATELNVTI 120
Query: 122 NTILNDLNELRSE--------LAEKEYNLQLQSTKCRGYFLDGHPLS----IIQYLYKLL 169
+ DLN+L S+ + +K Y +Q++ + R + H +S QY+ KL
Sbjct: 121 AMVSQDLNKLESQVKSFGLSLIRKKGYGVQIEGDEGRKRSVLSHLISRHIDPFQYVEKLK 180
Query: 170 DDIYHNGSSSFIDLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFM 229
+ I + S S D + +L A E LD + QR +
Sbjct: 181 ERIQEDVSKS--DTISERLLGLVDA------EKLDKIEEQI---QRMRNQLPYDLADSAY 229
Query: 230 IQILPFILMAYRKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEV 289
I ++ I +A +++ + + + +EY+IA E+ LEE F L + E E+
Sbjct: 230 IGLVVHIALAMERLQKGDIIHFD-DEYKEQIKDEQEYKIAAEVIGHLEEAFSLFIPEDEI 288
Query: 290 GLVAM-LMLSFRKDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHC 348
G + M LM + ++ N+L + D+ ++ + ++ H L L TH
Sbjct: 289 GYITMHLMGAKLRENQNYLLEESSMDIAYKAKELIRSVSNEMNIDVTHNNRFLNDLTTHL 348
Query: 349 KALLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLG 408
K +YR + + NP+ + IK Y ELF + +++ + + D+++ Y+ +H
Sbjct: 349 KPAVYRLKQQMNINNPMIDEIKKDYIELFEVVDKAIQHVFP--NLAFPDEEIGYIVLHFA 406
Query: 409 GELRNSQQSPNKLKLVIVSDEGIAIQKLL---LKQCQRYLTNSDIEAVFTTEQYQSVSDL 465
+ N LK++++ GI K+L LK ++ ++ +++F ++ L
Sbjct: 407 ATFLQTDSQSN-LKVLVICSSGIGTSKMLASKLKNTFPEISIANHQSLFDLDK----ETL 461
Query: 466 MHVDMVVSTSDALESRFPMLVVHPVLTDDD 495
D++VST + +++ P+LTD++
Sbjct: 462 AGYDVIVSTVALEDIDRSYVLISPLLTDEE 491
>gi|28210040|ref|NP_780984.1| transcriptional regulatory protein
[Clostridium tetani E88]
gi|28202475|gb|AAO34921.1| transcriptional regulatory protein
[Clostridium tetani E88]
Length = 650
Score = 83.6 bits (205), Expect = 9e-15
Identities = 93/415 (22%), Positives = 185/415 (44%), Gaps = 39/415 (9%)
Query: 109 TIDRLMQLNDVSRNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKL 168
T+ + VSR+T L+E+ L EK +QL + +G ++ G L + +Y
Sbjct: 55 TLQEISNFLGVSRSTTSKYLDEIEGYLREK--GVQLVRRRNKGIYIVGRELQKRRIIY-- 110
Query: 169 LDDIYHNGSSSFIDLFNHKLSQAFGASTYFSKEVLDYF------HHYLFISQRSLGKKIN 222
D I H+ S I H L Q T + + +YF H + + I+
Sbjct: 111 -DIILHSYDYSRI----HGLLQ---PETIYDLMIWNYFYGIDIKHIWELLIDTLKAINIS 162
Query: 223 SQDGQFMIQILPFILMAYRKMRLSPEVQTSLNSD-----FSLVWQRKEYEIAKELADELE 277
D F I+ +M R +Q +D + + EY+ AK +EL
Sbjct: 163 VSDMAFYNIIINTCIMIKR-------IQQDFIADIEYEKMDYISETFEYDEAKNYCNELS 215
Query: 278 ENFQLSLDEIEVGLVAMLML-----SFRKDRDNHLESQDYDDMRATLTSFLKELEERYHL 332
+ + + + + E+ ++M L F +D D ++ + ++ + + E+ +
Sbjct: 216 KRYNIIIPKTEIIWISMHFLGANPIKFLED-DIFSNIKERHKLVNSIEKMVSQFEKEVDI 274
Query: 333 HFVHKKDLLRQLLTHCKALLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQ 392
+K +++ L H + R +Y I N E IK+ Y E + IT++ V+++ +
Sbjct: 275 ALENKDEIINGLFVHLMPAINRAKYSIKIKNSYKEDIKNSYNEFYTITANLVRIINNEFN 334
Query: 393 IKLTDDDVAYLTIHLGGELRNSQQS-PNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIE 451
++L D+++Y+ +H + +S K ++++V G+ KLL + + + +I
Sbjct: 335 VELGSDEISYVCLHFVAAIEKMNKSYATKKRIIVVCSTGVGTSKLLANKLRNSYDDIEII 394
Query: 452 AVFTTEQYQSVSDLMHVDMVVSTSDALESRFPMLVVHPVLTDDDIIRLIR-FSKK 505
+ + Q+ S + +D V+ST E+ P++VV+P++ D+D +L + FS K
Sbjct: 395 DILSYNQFIS-RNTFDIDYVISTVALKEANVPVIVVNPLINDEDKKQLSKIFSPK 448
>gi|22991881|ref|ZP_00036565.1| hypothetical protein [Enterococcus
faecium]
Length = 622
Score = 83.6 bits (205), Expect = 9e-15
Identities = 121/573 (21%), Positives = 251/573 (43%), Gaps = 54/573 (9%)
Query: 4 LDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRVG 63
L K+ LL YL+++ EP T+ +A N S R + Y L+ I + L + S G
Sbjct: 6 LTKRERQLLIYLVEMSEPVTIKKLAEKENVSVRTIKYDLDDIREWLNERKQVLYSKRSQG 65
Query: 64 ILL--TEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSR 121
I + + + + L +V + S R++ L+ ++V K+ +T ++ DVS+
Sbjct: 66 IWMNISSSDRIKLKSELMDVNRFEIFADQSLRIKRLLIMLLVTKEAITGMKMANALDVSK 125
Query: 122 NTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHP----LSIIQYL---------YKL 168
+TI+NDL+ L + ++ L Q+ K G+++ G L+I + L YKL
Sbjct: 126 DTIMNDLDVLENNFLKEGLTLNRQARK--GFWIIGEERLVRLTIEEILQKEFTDYDIYKL 183
Query: 169 LDDIYHNGSSSFIDLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQF 228
+ + + G + + ++++ + A F++ ++ H F + +K+N +
Sbjct: 184 MSLLLNGGETEYFEMYS---ATATPIQEVFNQVIIRMRHLLEFENL----EKLNYAE--- 233
Query: 229 MIQILPFILMAYRKMRLSPEVQTSLNSDFSLVWQRK--EYEIAKELADELEENFQLSLDE 286
++ IL + +A ++R + + LV +++ + +++ + ++ + +QL L E
Sbjct: 234 LLNILIRVTIATVRLRKEATI-----GRYQLVAEQELDKNDLSYRVMQQVFDYYQLPLFE 288
Query: 287 IEVGLVAMLMLSFRKDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLT 346
E + + ++ D+ + + + ++ + + F LL L
Sbjct: 289 DEYHYI----------YSDTFDTIHQQDVMKLVENVIYKVSKAINHSFYQDPQLLTNLYA 338
Query: 347 HCKALLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIH 406
H L RK+ + NP E IK KY ELF +V+ I + D VAY+ +H
Sbjct: 339 HLSMRLSRKKKFVNEYNPFKEDIKQKYPELFDAIKQAVRQEISEQNILINDSFVAYIALH 398
Query: 407 LGGELRNSQQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLM 466
++ ++ V + G+ + L+ ++ L N I A + Q +
Sbjct: 399 FLVSYER-EEDLRSVRAVYICSTGLGVTSLIKQKINEELNNITIVAFASVLNAQEMIATK 457
Query: 467 HVDMVVSTSDALESRFPMLVVHPVLTDDDIIRLIRFSKKGNCANSNQFTNEL---EKTIA 523
D+V+S P + VHP+ T+ D+ ++ + KK +++ Q + L E +I
Sbjct: 458 DPDLVISIFPINGIDRPFIKVHPLPTEQDLKKIQQIIKKILASSNQQERHNLNLRETSIN 517
Query: 524 QYVKEDSER------YVLKSKIEKLIHQELLQD 550
+ ED + Y + ++ ++ EL+Q+
Sbjct: 518 KDTLEDFSKELILKAYTIYERLLVILEAELIQE 550
>gi|16804138|ref|NP_465623.1| similar to transcription
antiterminator [Listeria monocytogenes EGD-e]
gi|25514427|pir||AC1337 transcription antiterminator homolog
lmo2099 [imported] - Listeria monocytogenes (strain
EGD-e)
gi|16411569|emb|CAD00177.1| lmo2099 [Listeria monocytogenes]
Length = 668
Score = 83.2 bits (204), Expect = 1e-14
Identities = 117/550 (21%), Positives = 242/550 (43%), Gaps = 42/550 (7%)
Query: 4 LDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRVG 63
+++ +L+ YLL L + ++ S+ + + +IN L S+ P ++ +
Sbjct: 1 MEQNCKELITYLL-LNRQVNLRNVSKNFKVSKEAIGAQITQINHLLKSE-PILIDHDM-- 56
Query: 64 ILLTEKQKAAC-RLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRN 122
I +T+ + AC RLL E + + R +L ++ +++ +++ L VS+N
Sbjct: 57 IFVTDVCREACYRLLTAEEQQLFSFYEVNIRRKLIMIKLLLHNHYMSLGALADYVYVSKN 116
Query: 123 TILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFID 182
T+L D+ ++ L E+ +QL ++ GY + G I L +L+ ++ F+
Sbjct: 117 TMLTDVKSIKESL--HEFEIQLDYSRKDGYAVSGSEFLIRNLLAELIREVVQTPYGKFV- 173
Query: 183 LFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAYRK 242
L KL + + K+ L+ L +I D Q ++ LP+IL K
Sbjct: 174 LDEKKLITV--SEVFLLKKRLEKVESKL---------QITFTDEQ--MEELPYILHGIIK 220
Query: 243 MRLSPEVQTSLNSDFSLVWQRKEYEIAKEL---ADELEEN--FQLSLDEIEVGLVAMLML 297
+ + + + +E+ I KE+ D L EN LSL + LV
Sbjct: 221 RSKVTNKKWTFKIEMYDIKNTREFPIMKEMFWGYDFLSENDLLYLSLQVLASNLV----- 275
Query: 298 SFRKDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRY 357
++ L D +++ + F++ LE + + K + +++ H + +YR
Sbjct: 276 ------ESALHFSDSEEIAYAVDEFIRLLEMYFATEIMKKNEFKEKVILHVRPAIYRTIL 329
Query: 358 GIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQS 417
G NPL + +Y F I + K EK K +++++ YL++ + G + +++
Sbjct: 330 GFQINNPLKKQFIKEYTPTFNIVEKASKPFEKLVGHKWSEEEIVYLSMIVLGWMYQIEET 389
Query: 418 PNKL-KLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTSD 476
+ + V++ G +I KLLL+ + N D + + Q +V+ +D + +T
Sbjct: 390 EQPIFRAVVLCKSGTSISKLLLENLKMMFPNIDFQGAYAVRQLNTVA--RDIDFIFTTV- 446
Query: 477 ALESRFPMLVVHPVLTDDDIIRLIRFSKKGNCANSNQFTNELEKTIAQYVKEDSERYVLK 536
++S + V+ +L+ D L K +S++ T EL + + E++ R V +
Sbjct: 447 PVQSDATIFVIPSILSKDSRQILREQVDKAIEMDSHKKTKELLAMLKDEIPEENIRLV-Q 505
Query: 537 SKIEKLIHQE 546
+K+E +++
Sbjct: 506 AKVESFFNKK 515
>gi|16763248|ref|NP_458865.1| putative BglB-family transcriptional
antiterminator [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29144727|ref|NP_808069.1| putative BglB-family transcriptional
antiterminator [Salmonella enterica subsp. enterica
serovar Typhi Ty2]
gi|25513064|pir||AG1057 probable BglB-family transcription
antiterminator STY4787 [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16505556|emb|CAD06908.1| putative BglB-family transcriptional
antiterminator [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29140366|gb|AAO71929.1| putative BglB-family transcriptional
antiterminator [Salmonella enterica subsp. enterica
serovar Typhi Ty2]
Length = 657
Score = 81.3 bits (199), Expect = 4e-14
Identities = 95/409 (23%), Positives = 183/409 (44%), Gaps = 30/409 (7%)
Query: 90 SSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILNDLNELRSELAEKEYNLQLQSTKC 149
S ER+ L + + + ++ L VSR T+ ND+ ++R L Y+L L++
Sbjct: 110 SQERIHYLLARFLTSAFSLKLEDLADEWFVSRATLQNDMADVREHLL--RYHLTLETRPR 167
Query: 150 RGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFIDLFNHKLSQAFGASTYFSKEVLDYFHHY 209
G L G ++I L LL + S H L + +T S+ +
Sbjct: 168 HGMKLFGGEMAIRACLTDLLWTLVQQEPS-------HPLIVSTTLNTEVSQRLQSLLPDI 220
Query: 210 LFISQRSLGKKINSQDGQFMIQILPFILMAYRKMRLSPEVQTSLNSDFSLVWQRKEYEIA 269
Q L + +G+ +++ + +A R++R + + + K A
Sbjct: 221 FSHCQIRL-----TDEGELFLRL--YCAVAVRRIREGYPLSECVAEEVD----EKVRHAA 269
Query: 270 KELADELEENFQLSLDEIEVGLVAMLMLSFRKDRDNHLESQDYDDMRATLTSFLKELEER 329
E+A+ L++ L E EV + + ++ R+ ++ + + DD A + L + +
Sbjct: 270 HEIAELLQQLADKPLSEPEVSWLK-VHIAARQVQEIAPSAINADDEEALVHYILNFINTQ 328
Query: 330 YHLHFVHKKDLLRQLLTHCKALLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEK 389
Y+ + ++ K L LLTH K ++ R RY I NPL E+IK Y + +T +++ K
Sbjct: 329 YNYNLLNDKQLHADLLTHIKTMITRVRYQIMIPNPLLENIKQHYPMAWDMTLAAISSWGK 388
Query: 390 AWQIKLTDDDVAYLTIHLGGELRNS-----QQSPNKLKLVIVSDEGIAIQKLLLKQCQRY 444
++++++ +L +H+G L S Q+ P ++++V D G A+ +++ R
Sbjct: 389 YTPYTISENEIGFLVLHIGVGLERSYNIGYQRQP---QVLLVCDAGNAMVRMIEAVLARK 445
Query: 445 LTNSDIEAVFTTEQYQSVSDLMHVDMVVSTSDALESRFPMLVVHPVLTD 493
+I T Y++ D M D V+ST+ E P++++ P TD
Sbjct: 446 YPQIEIARTLTLRDYEA-RDSMVEDFVISTARIGEKDKPVIMIAPFPTD 493
>gi|16801268|ref|NP_471536.1| similar to transcription
antiterminator [Listeria innocua]
gi|25517399|pir||AH1707 transcription antiterminator homolog
lin2203 [imported] - Listeria innocua (strain Clip11262)
gi|16414716|emb|CAC97432.1| lin2203 [Listeria innocua]
Length = 668
Score = 80.1 bits (196), Expect = 9e-14
Identities = 117/550 (21%), Positives = 240/550 (43%), Gaps = 42/550 (7%)
Query: 4 LDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRVG 63
+++ +L+ YLL L + ++ S+ + + +IN L S+ P ++ +
Sbjct: 1 MEQDCKELITYLL-LNRQVNLRNVSKNFKVSKEAIGAQITQINHLLKSE-PILIDHDM-- 56
Query: 64 ILLTEKQKAAC-RLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRN 122
I +T+ + AC RLL E + + R +L ++ +++ +++ L VS+N
Sbjct: 57 IFVTDVCREACYRLLTAEEQQLFSFYEVNIRRKLIMIKLLLHNHYMSLGALADYVYVSKN 116
Query: 123 TILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFID 182
T+L D+ ++ L E+ +QL ++ GY + G I L +L+ ++ F+
Sbjct: 117 TMLTDVKSIKESL--HEFEIQLDYSRKDGYAVSGSEFLIRNLLAELIREVVQTPYGKFV- 173
Query: 183 LFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAYRK 242
L KL + + K+ L+ L +I D Q ++ LP+IL K
Sbjct: 174 LDEKKLITV--SEVFLLKKRLEKVESKL---------QITFTDEQ--MEELPYILHGIIK 220
Query: 243 MRLSPEVQTSLNSDFSLVWQRKEYEIAKEL---ADELEEN--FQLSLDEIEVGLVAMLML 297
+ + + + +E+ I KE+ D L EN LSL + LV
Sbjct: 221 RAKVTNRKWTFKIEMYDIKNTREFPIMKEMFWGYDFLSENDLLYLSLQVLASNLV----- 275
Query: 298 SFRKDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRY 357
++ L D +++ + F+ LE + + K + +++ H + +YR
Sbjct: 276 ------ESALHFSDSEEIAYAVDEFIGLLEMYFATEIMKKNEFKEKVILHVRPAIYRTIL 329
Query: 358 GIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQS 417
G NPL + +Y F I + K EK K +++++ YL++ + G + +++
Sbjct: 330 GFQINNPLKKQFIKEYTPTFNIVEKASKPFEKLVGHKWSEEEIVYLSMIVLGWMYQIEET 389
Query: 418 PNKL-KLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTSD 476
+ + V++ G +I KLLL+ + N D + + Q SV+ +D V +T
Sbjct: 390 EQPIFRAVVLCKSGTSISKLLLENLKMMFPNIDFQGAYAVRQLNSVA--RDIDFVFTTV- 446
Query: 477 ALESRFPMLVVHPVLTDDDIIRLIRFSKKGNCANSNQFTNELEKTIAQYVKEDSERYVLK 536
++S + V+ +L+ D L K +S++ T EL + + E++ ++++
Sbjct: 447 PVQSSATIFVIPSILSKDSRQILREQVDKAIEMDSHKKTKELLAMLKDDIPEEN-IHLVQ 505
Query: 537 SKIEKLIHQE 546
K+E ++
Sbjct: 506 EKVESFFSKK 515
>gi|20807093|ref|NP_622264.1| putative transcriptional regulator
[Thermoanaerobacter tengcongensis]
gi|20515584|gb|AAM23868.1| putative transcriptional regulator
[Thermoanaerobacter tengcongensis]
Length = 694
Score = 80.1 bits (196), Expect = 9e-14
Identities = 109/510 (21%), Positives = 222/510 (43%), Gaps = 29/510 (5%)
Query: 1 LIILDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYP 60
++ L+ + +L +L L TV I + SRR Y + I + + I
Sbjct: 1 MVKLNSRQLQILKKIL-LSSKLTVSDIEREFHVSRRTAYRDIAGIGEFV-KKYNLIFVNT 58
Query: 61 RVGILLTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVS 120
G L +L LD V Y + + + ER ++ L ++ K+ V ++ + V+
Sbjct: 59 SEGFTLNGDAAGIEKLRLD-VIGY-FPVDAEERRKMILSELLQLKEPVKLEYFSKKFKVT 116
Query: 121 RNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLS----IIQYLYKLLDDIYHNG 176
TI DL EL L ++ L L + G ++ G+ S I +LY+ D
Sbjct: 117 TATISYDLKELEKWLEKQ--GLTLVTKPGYGVYISGNENSFRRAIANFLYENFD------ 168
Query: 177 SSSFIDLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQ----- 231
++ + G +L+ + ++ Q +++
Sbjct: 169 TAELANFLQRGYLSKSGIERNIDLRLLNLIDYDTVSKIEKAILRLKQQIDYEIVESSYMA 228
Query: 232 ILPFILMAYRKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGL 291
++ + +A ++++ +Q + + +EY AK+L + LEE + + E E+G
Sbjct: 229 LVVHLALAIKRLQEGETIQIG-EETLEDLKKTEEYLFAKKLGEYLEEELNIDIPEDEIGY 287
Query: 292 VAMLMLSFRKDRDNHLESQDYDD--MRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCK 349
+ + +L+ R +Q+Y D + + + +KE + + + F K L L +H
Sbjct: 288 ITIHLLAARYRS----TAQNYTDSEIESIVEEIIKEASKVFEVDFSEDKLLEEGLQSHLA 343
Query: 350 ALLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGG 409
LYR G+ NPL IK KY LF ++ +L K + + +D+V Y+ +H G
Sbjct: 344 PALYRLEMGLDIRNPLLGDIKAKYPVLFEKSNKVCDVLRKKLKRDIPEDEVGYIAMHFGA 403
Query: 410 ELRNSQQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVD 469
L +++ K +++V GI ++L+ + Q + + +E V ++ + + + +D
Sbjct: 404 ALERKKETFRKYNILVVCASGIGTSRMLMSKLQMFPQLNVVE-VASSVKLKELEKRKDID 462
Query: 470 MVVSTSDALESRFPMLVVHPVLTDDDIIRL 499
++VST + ++VV+P+L ++D+ +L
Sbjct: 463 LIVSTIPLKLTSKKVVVVNPLLLEEDVEKL 492
>gi|15612756|ref|NP_241059.1| BH0193~unknown conserved protein in
bacilli [Bacillus halodurans]
gi|25489147|pir||A83674 hypothetical protein BH0193 [imported] -
Bacillus halodurans (strain C-125)
gi|10172805|dbj|BAB03912.1| BH0193 [Bacillus halodurans]
Length = 683
Score = 79.7 bits (195), Expect = 1e-13
Identities = 92/416 (22%), Positives = 188/416 (45%), Gaps = 24/416 (5%)
Query: 27 IANALNQSRRKVYYHLEKINDAL-PSDVPQIVSYPRVGILLTEKQKAACRLLLDEVTDYS 85
+ A + +RR++ Y L KIN+ L +P+I + L+ +K ++ ++
Sbjct: 25 LKKAFHLTRRQLSYSLTKINEWLREHQLPEIERTRQGFFLVDQKVYSSVTGDVNNPPAPQ 84
Query: 86 YVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILNDLNELRSELAEKEYNLQLQ 145
+ +ER L L+ ++V+ D +++ VS+NTIL+DL +++ LA E +L ++
Sbjct: 85 PYLSKAEREDL-LLLMLVSSDDLSLHHFTSELAVSQNTILSDLKTVKTFLA--ECDLTIR 141
Query: 146 STKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFIDLFNHKLSQAFGASTYFSKEVLDY 205
++ GY+L G+ +I + ++ L G + ++ + G + E+
Sbjct: 142 YSRKFGYYLHGNEFNIRRLIFHLTCKWLTMGDGA------SRIQRVAGITKEEVGELKRR 195
Query: 206 FHHYLFISQRSLGKKINSQDGQFMIQILPFILMAYRKMRLSPEVQTSLNSDFSLVWQRKE 265
H +L +K+N IQ +P+ L+ K + + + + K+
Sbjct: 196 IH--------TLEQKLNLTFTDENIQSMPYTLLLILKRIKLGRLINRFSIHYEELSDTKQ 247
Query: 266 YEIAKELADELEENFQLSLDEIEVGLVAMLMLSFRKDRDNHLESQDYDDMRATLTSFLKE 325
Y +EL EE + E + + +L+ ++ L L+
Sbjct: 248 YHATEELLSGFEE-----IPREERLFITLYLLTTNVYWSKTSTEGQVPNLLPALVDMLRL 302
Query: 326 LEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVK 385
E+R + K+ LL +LL H YR +Y + ++ + I ++Y+EL + S+K
Sbjct: 303 FEKRACIALQEKEQLLTKLLLHVNPAYYRIKYQLTEMSKTSTKISEEYKELHHLVKQSMK 362
Query: 386 LLEKAWQIKLTDDDVAYLTIHLGGEL-RNSQQSPNKLKLVIVSDEGIAIQKLLLKQ 440
LE +++ +++ +YLT+ +GG L R K K ++V +G++I + LL +
Sbjct: 363 PLETLIGVEIPENESSYLTLLIGGWLTRQGDSIQKKTKAIVVCSKGVSISRFLLSE 418
>gi|16767694|ref|NP_463309.1| putative phosphotransferase system
mannitol/fructose-specific IIA domain (Ntr-type)
[Salmonella typhimurium LT2]
gi|16423012|gb|AAL23268.1| putative phosphotransferase system
mannitol/fructose-specific IIA domain (Ntr-type)
[Salmonella typhimurium LT2]
Length = 637
Score = 79.7 bits (195), Expect = 1e-13
Identities = 93/409 (22%), Positives = 183/409 (44%), Gaps = 30/409 (7%)
Query: 90 SSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILNDLNELRSELAEKEYNLQLQSTKC 149
S ER+ L + + + ++ L VSR T+ ND+ ++R L Y+L L++
Sbjct: 90 SQERIHYLLARFLTSAFSLKLEDLADEWFVSRATLQNDMADVREHLL--RYHLTLETRPR 147
Query: 150 RGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFIDLFNHKLSQAFGASTYFSKEVLDYFHHY 209
G L G ++I L LL + S H L + +T S+ +
Sbjct: 148 HGMKLFGGEMAIRACLTDLLWTLAQQEPS-------HPLIVSTTLNTEVSQRLRSLLPDI 200
Query: 210 LFISQRSLGKKINSQDGQFMIQILPFILMAYRKMRLSPEVQTSLNSDFSLVWQRKEYEIA 269
Q L + +G+ +++ + +A R++R + + + K A
Sbjct: 201 FSHCQIRL-----TDEGELFLRL--YCAVAVRRIREGYPLSECVAEEVD----EKVRHAA 249
Query: 270 KELADELEENFQLSLDEIEVGLVAMLMLSFRKDRDNHLESQDYDDMRATLTSFLKELEER 329
E+A+ L++ L E EV + + ++ R+ ++ + + DD A + L + +
Sbjct: 250 HEIAELLQQLADKPLSEPEVSWLK-VHIAARQVQEIAPSAINADDEEALVHYILNFINTQ 308
Query: 330 YHLHFVHKKDLLRQLLTHCKALLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEK 389
Y+ + ++ K L LLTH K ++ R RY I NPL E+IK Y + +T +++ K
Sbjct: 309 YNYNLLNDKQLHADLLTHIKTMITRVRYQIMIPNPLLENIKQHYPMAWDMTLAAISSWGK 368
Query: 390 AWQIKLTDDDVAYLTIHLGGELRNS-----QQSPNKLKLVIVSDEGIAIQKLLLKQCQRY 444
++++++ +L +H+G L S Q+ P ++++V D G A+ +++ R
Sbjct: 369 YTPYTISENEIGFLVLHIGVGLERSYNIGYQRQP---QVLLVCDAGNAMVRMIEAVLARK 425
Query: 445 LTNSDIEAVFTTEQYQSVSDLMHVDMVVSTSDALESRFPMLVVHPVLTD 493
+I T Y++ ++ D V+ST+ E P++++ P TD
Sbjct: 426 YPQIEIALTLTLRDYEARDSIVE-DFVISTARIGEKDKPVIMIAPFPTD 473
>gi|21398751|ref|NP_654736.1| PTS_EIIA_2,
Phosphoenolpyruvate-dependent sugar phosphotransferase
system, EIIA 2 [Bacillus anthracis A2012]
Length = 568
Score = 79.3 bits (194), Expect = 2e-13
Identities = 76/284 (26%), Positives = 129/284 (44%), Gaps = 19/284 (6%)
Query: 253 LNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLS---FRKDRDNHLES 309
LN + + + +KEY IAK++ +LE+ LS E EV V M +LS KDR ++E
Sbjct: 163 LNEEQAELIIKKEYAIAKQIVGDLEKELHLSFPEEEVLYVTMHLLSTAVTSKDRYENVEE 222
Query: 310 QDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFSVNPLTEHI 369
D+ A + L ++ E +L F + ++LL H K LL R +Y + + NPL +
Sbjct: 223 LLGKDLYAFMQHILFKVAEERNLVFYYDEELLFGFGVHLKTLLNRLKYKLNTRNPLLAEV 282
Query: 370 KDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPNKLKLVIVSDE 429
K Y F I ++ + + + ++ Y+ IH GG + Q+ K + ++V
Sbjct: 283 KKNYPYAFEIAVLVGDIIGEYTGESIPESEIGYIAIHFGGAMSRLQEQNQKKRCLLVCAT 342
Query: 430 GIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQ-SVSDLM--HVDMVVSTSDALES-RFPML 485
G +LL + + +E V T YQ V DL +D ++ST P++
Sbjct: 343 GQGSAQLLKYKILSQFRDK-LEIVGITGYYQLKVEDLYKEKIDCIISTIHIPSGLPVPII 401
Query: 486 VVHPVLTDDDIIRLIRFSKKGNCANSNQFTNELEKTIAQYVKED 529
V+ + D +I + Q + ++ QY+KED
Sbjct: 402 KVNSIFDDKEIKSI-----------GQQLFTHVNNSVQQYMKED 434
>gi|23100211|ref|NP_693678.1| hypothetical protein [Oceanobacillus
iheyensis HTE831]
gi|22778443|dbj|BAC14712.1| hypothetical conserved protein
[Oceanobacillus iheyensis HTE831]
Length = 685
Score = 78.6 bits (192), Expect = 2e-13
Identities = 104/533 (19%), Positives = 236/533 (43%), Gaps = 39/533 (7%)
Query: 23 TVMAIANALNQSRRKVYYHLEKINDALP-SDVPQIVSYPRVGILLTEKQ--KAACRLLLD 79
T +A+ + SRR++ Y +KIN+ L S +P+I R G + ++ A +
Sbjct: 19 TSSKLADKYDLSRRQLGYTFQKINNWLTESQLPEI-ERTRKGQFIIDQSILTATVTSKVS 77
Query: 80 EVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILNDLNELRSELAEKE 139
+++ ++ +R++ L+ I+ K+ +++ +S+NT+LND+ + ++ L
Sbjct: 78 PISNREVILSEVDRVKFLLIMILGGKEPLSLAHFTSQLSISKNTVLNDMKQAQNHL--NA 135
Query: 140 YNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFIDLFNHKLSQAFGASTYFS 199
Y L++Q ++ GY ++G + + L +DI + KL +A
Sbjct: 136 YQLEIQYSRKDGYQIEGDEFQARKVMIWLANDIILHSDE------KEKLHEAL----QLE 185
Query: 200 KEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAYRKMRLSPEVQTSLNSDFSL 259
+L+ FH L + L + + M I IL R++R ++Q L+ +
Sbjct: 186 GSLLEQFHRRLERVENKLHIEFTDEKLMTMPTIFSLIL---RRIRKGFQIQ-PLSIRYDE 241
Query: 260 VWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFRKDRDNHLESQDYDDMRATL 319
+ KEY+ +E+ + SL E + + +L+ R+ L D+ +
Sbjct: 242 LSNTKEYQATEEIL------YDKSLPVPEKLFITLNLLTGSVHRNQLLIEDSIPDLVPAI 295
Query: 320 TSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFSVNPLTEHIKDKYEELFAI 379
++ E+ + F ++ L+ +LL H YR +Y + +++E++ +
Sbjct: 296 DKMVRLFEKNACIIFQDREQLIDKLLQHLTPAYYRIKYKLTDAIVFESTYNEEFEQIRHL 355
Query: 380 TSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQS-PNKLKLVIVSDEGIAIQKLLL 438
+++ + + + K+ ++++ Y+ + + G + +S K+K ++V +G+++ +L+
Sbjct: 356 IKRALEPISEVMESKIPENEITYIVMLVSGWMHMQGESMTEKVKAIVVCPQGVSVSRLMF 415
Query: 439 KQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTSDALESRFPMLVVHPVLTDDDIIR 498
Q + + ++ + + D+V S ALE+ + + +L +D R
Sbjct: 416 HQLKELFPEFVFLDSLSVREFLTYG--LEYDVVFSPI-ALETEKNLFISKTMLRPEDKQR 472
Query: 499 LIRFSKKGNCANSNQFTNELE-----KTIAQYVKEDSERYVLKSKIEKLIHQE 546
L K+ + NE+ KT+ QY + E+ L+ ++ IH++
Sbjct: 473 L---RKQVMLEVYDYIPNEINVDDILKTVGQYADVNDEKQ-LRKELYAYIHRD 521
>gi|4512373|dbj|BAA75337.1| similar to B.subtilis yjdC
gene(24%-identity) [Bacillus halodurans]
Length = 444
Score = 78.6 bits (192), Expect = 3e-13
Identities = 91/416 (21%), Positives = 188/416 (44%), Gaps = 24/416 (5%)
Query: 27 IANALNQSRRKVYYHLEKINDAL-PSDVPQIVSYPRVGILLTEKQKAACRLLLDEVTDYS 85
+ A + +RR++ Y L KIN+ L +P+I + L+ +K ++ ++
Sbjct: 25 LKKAFHLTRRQLSYSLTKINEWLREHQLPEIERTRQGFFLVDQKVYSSVTGDVNNPPAPQ 84
Query: 86 YVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILNDLNELRSELAEKEYNLQLQ 145
+ +ER L L+ ++V+ D +++ VS+NTIL+DL +++ LA E +L ++
Sbjct: 85 PYLSKAEREDL-LLLMLVSSDDLSLHHFTSELAVSQNTILSDLKTVKTFLA--ECDLTIR 141
Query: 146 STKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFIDLFNHKLSQAFGASTYFSKEVLDY 205
++ GY+L G+ +I + ++ L G + ++ + G + E+
Sbjct: 142 YSRKFGYYLHGNEFNIRRLIFHLTCKWLTMGDGA------SRIQRVAGITKEEVGELKRR 195
Query: 206 FHHYLFISQRSLGKKINSQDGQFMIQILPFILMAYRKMRLSPEVQTSLNSDFSLVWQRKE 265
H +L +K+N IQ +P+ L+ K + + + + K+
Sbjct: 196 IH--------TLEQKLNLTFTDENIQSMPYTLLLILKRIKLGRLINRFSIHYEELSDTKQ 247
Query: 266 YEIAKELADELEENFQLSLDEIEVGLVAMLMLSFRKDRDNHLESQDYDDMRATLTSFLKE 325
Y +EL EE + E + + +L+ ++ L L+
Sbjct: 248 YHATEELLSGFEE-----IPREERLFITLYLLTTNVYWSKTSAEGQVPNLLPALVDMLRL 302
Query: 326 LEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVK 385
E+R + K+ LL +LL H YR +Y + ++ + I ++Y+EL + S++
Sbjct: 303 FEKRACIALQEKEQLLTKLLLHVNPAYYRIKYQLTEMSKTSTKISEEYKELHHLVKQSME 362
Query: 386 LLEKAWQIKLTDDDVAYLTIHLGGEL-RNSQQSPNKLKLVIVSDEGIAIQKLLLKQ 440
LE +++ +++ +YLT+ +GG L R K K ++V +G++I + LL +
Sbjct: 363 PLETLIGVEIPENESSYLTLLIGGWLTRQGDSIQKKTKAIVVCSKGVSISRFLLSE 418
>gi|19703543|ref|NP_603105.1| Transcriptional regulatory protein
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gi|19713639|gb|AAL94404.1| Transcriptional regulatory protein
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
Length = 660
Score = 78.6 bits (192), Expect = 3e-13
Identities = 116/501 (23%), Positives = 215/501 (42%), Gaps = 47/501 (9%)
Query: 15 LLKLEEPETVM-AIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRVGILLTEKQKAA 73
+LKL E E + IA L + R + Y +++IN+ L + +I L E
Sbjct: 1 MLKLIENEKKLPKIAELLTLTERSIRYKIDEINEELGTKKIEIKKREFFSSLTDEDMTK- 59
Query: 74 CRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILNDLNELRS 133
L++ V +Y+ ER +L ++ ++ KD + + + S++TI NDL L+
Sbjct: 60 ---LVENVEGENYIYNQKERQELIILYTLMKKDNFLLKEVAEKLGTSKSTIRNDLKNLKK 116
Query: 134 ELAEKEYNLQ-LQSTKCRGYF---LDGHPLSIIQYLYKLLDDIYHNGSSSFIDLFNHKLS 189
L +YN++ LQ K + YF D + I YLYK + F+ K
Sbjct: 117 ILL--DYNIKLLQDDKLKYYFDYLEDDYRYFIATYLYKYVS-------------FDEKYD 161
Query: 190 QAFGAS-TYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPF--ILMAYRKMRLS 246
+ F +YF K + S+ KK+ + +M + L ILM + R
Sbjct: 162 KIFFDDISYFRKVIYKEIKDEYITEINSVSKKMKKAELDYMDETLNILAILMVISQKREK 221
Query: 247 PEVQTSLNSDFSLVWQRKEY-EIAKELADELEENFQLSLDEIEVGLVAMLMLSFRKDRDN 305
+ + ++ +RKEY ++ K D N D L R ++D
Sbjct: 222 KNSNLKI-ENIKILEKRKEYLQLKKIFTDFSNTNLMFFTD--------YLFRITRDEKDI 272
Query: 306 HLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFSVNPL 365
++ +++ D+ + ++ E + + + L ++ + K L++R + I N +
Sbjct: 273 FVKFKNWLDIIVAVNKIVRTFEIKIKVDLKNIDIFLDEIFYYIKPLIFRTKKRIKLKNSI 332
Query: 366 TEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPNKLKLVI 425
+ +K Y +F + LE+ K++D+++AYL L+N+ + K LV
Sbjct: 333 LKDVKKLYPSIFNFLKKNFYFLEEVINEKVSDEEIAYLVPFFHKALQNNNKINKKGILVT 392
Query: 426 VSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQY-QSVSDLMHVDMVVSTSDALE----- 479
E IA L LK+ DI+ + T + + Q V DL + D +++T +
Sbjct: 393 TYKENIA---LFLKENIEAEFLIDIDKILTLKSFEQIVKDLENYDYILTTFSVEKDFVKE 449
Query: 480 -SRFPMLVVHPVLTDDDIIRL 499
R ++ ++P+LT+ DI +L
Sbjct: 450 IKRTKIIELNPILTEKDIKKL 470
>gi|16799522|ref|NP_469790.1| similar to transcription
antiterminator BglG family [Listeria innocua]
gi|25516269|pir||AF1488 transcription antiterminator BglG family
homolog lin0445 [imported] - Listeria innocua (strain
Clip11262)
gi|16412874|emb|CAC95678.1| lin0445 [Listeria innocua]
Length = 647
Score = 78.2 bits (191), Expect = 3e-13
Identities = 112/510 (21%), Positives = 219/510 (41%), Gaps = 42/510 (8%)
Query: 3 ILDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRV 62
++ + +++ +L+K + V IAN L S + V L++I+ L +V P++
Sbjct: 1 MIANREKNIIQFLMKTGQTR-VGTIANHLGLSEKTVSNSLKEIDVFLKDFDMTVVRKPKI 59
Query: 63 GILLTEKQKA---ACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDV 119
G+ + KA R L ++V+ ER+ ++ A D +TI +L +
Sbjct: 60 GVYIEGDNKAFAEVSRFLDNQVSQIPST--KEERVIYIFSKLLKADDYITIHQLADELYI 117
Query: 120 SRNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHN---G 176
SR+TI ++ E+ L ++ L + +K G L I + + L + N G
Sbjct: 118 SRSTIEKNMVEVTKMLEKEGITLYKKPSK-------GMKLLISEREKRALTSKFINNFWG 170
Query: 177 SSSFIDLFNHKLSQAFGA-----STYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQ 231
++ ++ K+ QAF + F +E L + + S D F
Sbjct: 171 NNWYLKQEGEKVLQAFDTIKADVTGIFPEEGLKEI--IAIVQEFSERHDFAFTDYAFQ-S 227
Query: 232 ILPFILMAYRKMRLSPEVQTSLNSDFSLVW--QRKEYEIAKELADELEENFQLSLDEIEV 289
I+ + +A ++R ++ + V+ QR EI L LE+ + + EV
Sbjct: 228 IVIHLAIAVERIRAGEYIENVESDPMKDVFDSQRNNTEI---LVSMLEDRLDIKIPAFEV 284
Query: 290 GLVAM-LMLSFRKDRDNHLES--QDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLT 346
G + + L ++ + D L S DD+ +++ L E + K LL L T
Sbjct: 285 GYIQLHLTAAYNQQHDELLVSVRPQEDDVAEFVSTCLVEGN--------YDKSLLDDLTT 336
Query: 347 HCKALLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIH 406
H K+ + R + G+ NP IK + + F E+ + +++ +D+ AY+ +H
Sbjct: 337 HMKSAINRLKLGMHFKNPYLSKIKQNFPQAFEEALYFKAKFEQKYDVQVNEDETAYIALH 396
Query: 407 LGGELRNSQQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLM 466
S+ P+++++V+V G+ +LL + ++Y IE + + + +
Sbjct: 397 FEAYKERSRSFPDQIRVVLVCSTGLGSSRLLAARIKKYFPMIMIEKILSVQALMETE--V 454
Query: 467 HVDMVVSTSDALESRFPMLVVHPVLTDDDI 496
VD+V+ST P +VV P+++ D+
Sbjct: 455 DVDLVISTIYLELEDIPSIVVSPMMSKADL 484
>gi|28379546|ref|NP_786438.1| transcription regulator [Lactobacillus
plantarum WCFS1]
gi|28272386|emb|CAD65301.1| transcription regulator [Lactobacillus
plantarum WCFS1]
Length = 707
Score = 77.4 bits (189), Expect = 6e-13
Identities = 110/493 (22%), Positives = 220/493 (44%), Gaps = 40/493 (8%)
Query: 26 AIANALNQSRRKVYYHLEKINDALPS---DVPQIVSYPRVGILLTEKQKAACRLLLD--- 79
++A +L SRR VY +L ++ L S + P+ V+ G LT K + L++
Sbjct: 27 SLAASLQVSRRSVYNYLNNVSRKLISVGIEPPRNVNGS--GYYLTRDSKLYVKDLINGKD 84
Query: 80 -EVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILNDLNELRSELAEK 138
E + ++ ++R + L+++ V + +TI +LM + V+RNT+++DL+ +R EL E
Sbjct: 85 GEPDKRVHRVQFTDRRNILLLALFVGERDITISQLMNITGVARNTVISDLSRVRKELGEN 144
Query: 139 EYNLQLQSTKCRGYFLDGHPLSIIQYL---YKLLDDIYHNGSSSFIDLFNHKLSQAFGAS 195
++L TK G+ L G L+I Y + L D Y ++ + S G
Sbjct: 145 R--IELVGTK-DGHSLRGQELTIRNYFQVHFTALIDGY-----DWVQKYQADNSFFAGKD 196
Query: 196 TYFSKEVL-DYFHHYLFISQRSLGKKINSQDGQFMIQI-LPFILMAYRKMRLSPEVQTSL 253
T +L D+ H S+R+ S D MI+ F+L P+
Sbjct: 197 TVGLNTMLNDWMHLVERQSERAF-----SDDAIRMIEFYYAFVLKRILSGCFIPQDTFPS 251
Query: 254 N-SDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFRKDRDNHLESQDY 312
N D + +KE+ +A L ++ ++ + E + L+LS + + +E +
Sbjct: 252 NIDDRRELRNKKEFGLASNLLAQV--GVEVGSHDSEALYLESLLLS---GQLHSVEPDER 306
Query: 313 DDMRATLTSFLKELEERYH----LHFVHKKDLLRQLLTHCKALLYRKRYGIFSVNPLTEH 368
D+++ + E+ E + F ++ L +L H + YR +Y + + +
Sbjct: 307 DNVKTKVYKAAIEVVESFQQITGFSFYDRRQLTSELYVHLLSTYYRVKYHRQYRDGMVKA 366
Query: 369 IKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPNKLKLVIVSD 428
I++ Y +++ T S++ EK L +++++ + I+ G ++ Q + ++V
Sbjct: 367 IEENYPDIYTYTELSIRPFEKLNNYPLNENELSLIAIYFGSQM--YQDESHLGSALLVCS 424
Query: 429 EGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTSDALESRFPMLVVH 488
G+ ++L Q + T Y S++ + +V+ST + +LV+H
Sbjct: 425 TGLGTSRMLKVQLESAFKGLKFVGPITKRNYNSLTQISE-SVVLSTIPLDKKNREVLVLH 483
Query: 489 PVLTDDDIIRLIR 501
P++ D +I L +
Sbjct: 484 PIMNDREINELTK 496
>gi|16802469|ref|NP_463954.1| similar to transcription
antiterminator BglG family [Listeria monocytogenes
EGD-e]
gi|25513865|pir||AB1128 transcription antiterminator BglG family
homolog lmo0425 [imported] - Listeria monocytogenes
(strain EGD-e)
gi|16409802|emb|CAC98504.1| lmo0425 [Listeria monocytogenes]
Length = 653
Score = 77.4 bits (189), Expect = 6e-13
Identities = 112/507 (22%), Positives = 218/507 (42%), Gaps = 36/507 (7%)
Query: 3 ILDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRV 62
++ + +++ +L+K + V IAN L S + V L++I+ L +V P++
Sbjct: 7 MIANREKNIIQFLMKTGQTR-VGTIANHLGLSEKTVSNSLKEIDVFLKDFDMTVVRKPKI 65
Query: 63 GILLTEKQKA---ACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDV 119
G+ + KA R L ++V+ ER+ ++ A D +TI +L +
Sbjct: 66 GVYIEGDNKAFAEVSRFLDNQVSQIPST--KEERVIYIFSKLLKADDYITIHQLADELYI 123
Query: 120 SRNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSS 179
SR+TI ++ E+ +++ EKE + L +G L K + + + G++
Sbjct: 124 SRSTIEKNMVEV-TKMLEKE-GITLYKKPSKGMKLLISEREKRALTSKFITNFW--GNNW 179
Query: 180 FIDLFNHKLSQAFGA-----STYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILP 234
++ K+ QAF + F +E L + + S D F I+
Sbjct: 180 YLKQEGEKVLQAFDTIQADVTGIFPEEGLKEI--IAIVQEFSERHDFTFTDYAFQ-SIVI 236
Query: 235 FILMAYRKMRLSPEVQTSLNSDFSLVW--QRKEYEIAKELADELEENFQLSLDEIEVGLV 292
+ +A ++R V+ + V+ QR EI L LEE + + EVG +
Sbjct: 237 HLAIAVERIREGEYVENVESDPMKDVFESQRNNTEI---LVGMLEERLDIKIPAFEVGYI 293
Query: 293 AM-LMLSFRKDRDNHLESQ--DYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCK 349
+ L ++ + D L + DD+ ++ L E + K LL L TH K
Sbjct: 294 QLHLTAAYNQQHDELLVNTPPQEDDVADFVSRCLAEGN--------YDKGLLEDLTTHMK 345
Query: 350 ALLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGG 409
+ + R + G+ NP IK + + F E+ + +++ +D+ AY+ +H
Sbjct: 346 SAINRLKLGMHFKNPYLSKIKQNFPQAFEEALYFKAKFEQKYDVQVNEDETAYIALHFEA 405
Query: 410 ELRNSQQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVD 469
S+ P+++++V+V G+ +LL + ++Y IE + + + + VD
Sbjct: 406 YKERSRSFPDQIRVVLVCSTGLGSSRLLAARIKKYFPMITIEKILSVQALMETE--VDVD 463
Query: 470 MVVSTSDALESRFPMLVVHPVLTDDDI 496
+V+ST P +VV P+++ D+
Sbjct: 464 LVISTIYLELEDIPSIVVSPMMSKADL 490
>gi|22536378|ref|NP_687229.1| transcriptional antiterminator, BglG
family [Streptococcus agalactiae 2603V/R]
gi|22533204|gb|AAM99101.1|AE014200_20 transcriptional
antiterminator, BglG family [Streptococcus agalactiae
2603V/R]
Length = 639
Score = 75.9 bits (185), Expect = 2e-12
Identities = 114/481 (23%), Positives = 220/481 (45%), Gaps = 43/481 (8%)
Query: 86 YVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILNDLNELRSELAEKEYNLQLQ 145
+ + ER+ L + ++ V+ VS+NT L+D+ LRS+LA++ + L
Sbjct: 82 FYLTQEERVCLIYLYSFCRREFVSNVHYQDFLKVSKNTTLSDIKMLRSKLAKR--GISLT 139
Query: 146 STKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFIDLFNHKLSQAFGASTYFSKEVLDY 205
T+ +GY L G + Q ++++ + + F L S F S ++ ++Y
Sbjct: 140 YTRAKGYSLVGDEMDKHQVAFQMITQLLES-PIGFWSLNYILSSWKFALSYEKLEKTVEY 198
Query: 206 FHHYLFIS--QRSLGKKINSQDGQFMIQIL-PFILMAYRKMRLSPEVQTSLNSDFSLVWQ 262
F+ +S Q L K + F+I IL + R ++ SP V L
Sbjct: 199 FYESFQLSPIQDRLEKSL-----YFIILILCRYQRSVDRVLQGSPIVSEQLK-------- 245
Query: 263 RKEYEIAKELADELEENFQLS--LDEIEVGLVAMLMLSFRKDRDNHLESQDYDDMRATLT 320
E+ + L ++ LS LD+ E + +++ + ++D D A
Sbjct: 246 ----ELTTIIVTNLSQDISLSKPLDQKEKDYITLILSGCFEGEG----TKDDDFFEALAK 297
Query: 321 SFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFSVNPLTEHIKDKYEELFAIT 380
+ + E+E L+F +K++LL+ L H +R +YG+ + T++IK+ Y +LF +
Sbjct: 298 AIVDEMETVSLLNFSNKEELLQGLKRHIIPAYFRLKYGLTGDSGYTQNIKEHYSDLFLLV 357
Query: 381 SSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPN-KLKLVIVSDEGIAIQKLLLK 439
+++ LE+ + + D +++Y IH GG LR S + + K +I+ G++ ++ +
Sbjct: 358 KKALRPLEEQVGL-IPDSEISYFVIHFGGYLRQSGGTQSMSYKALILCPNGVSSSLVIKE 416
Query: 440 QCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTSDALESRFPMLVVHPVLTDDDIIRL 499
+ + V EQ + + + + DMV ST +E++ P +V ++T + + +L
Sbjct: 417 KLRGLFPQIHFHRVSKIEQLKLIDNQTY-DMVFSTI-FVETKKPNYLVSLMMTAEQVQQL 474
Query: 500 IR-----FSKKGNCANSNQFTNELEKTIAQYVKEDSERYVLKSKIEKLIHQELL-QDVLP 553
F K C + Q ++L TI +Y E LK + ++ Q++L +DV P
Sbjct: 475 KELVISDFPKA--CLDDFQL-DQLIATIKKYAHVHCEEE-LKLALRTMVKQDILRKDVRP 530
Query: 554 L 554
L
Sbjct: 531 L 531
>gi|16080911|ref|NP_391739.1| transcriptional regulator
(antiterminator) [Bacillus subtilis]
gi|1168885|sp|P46321|LICR_BACSU Probable licABCH operon regulator
gi|7475600|pir||H69651 lichenan operon transcription antiterminator
licR - Bacillus subtilis
gi|895747|emb|CAA90284.1| putative cel operon regulator [Bacillus
subtilis]
gi|1783265|dbj|BAA11742.1| cel operon regulator [Bacillus subtilis]
gi|2636395|emb|CAB15886.1| transcriptional regulator [Bacillus
subtilis subsp. subtilis str. 168]
Length = 641
Score = 75.1 bits (183), Expect = 3e-12
Identities = 104/499 (20%), Positives = 215/499 (42%), Gaps = 29/499 (5%)
Query: 10 DLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRVGILLTEK 69
D+L L+ E P T A LN + R V ++++ L + S G L
Sbjct: 8 DILRLLMAAEAPVTSSFFAAQLNVTTRTVRNDIKELQGVLSGHGAFVQSVRGSGYKLRID 67
Query: 70 QKAACRLLL-DEVTDYSYV-MKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILND 127
+ R LL DE + + ER+ + +++A + +D L + +S++T+ D
Sbjct: 68 DEQVFRTLLQDEFQQKKGLPVLPEERMAYLMKRLLLADHYLKLDELAEELFISKSTLQTD 127
Query: 128 LNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFIDLFNHK 187
L E++ L Y + +++ G+ L G +Q Y + + I + ID+ N K
Sbjct: 128 LKEVKKRLL--PYRIVMETRPNYGFKLRGDE---VQMRYCMAEYIVDERETE-IDVLNEK 181
Query: 188 LSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAYRKMRLSP 247
+ KE ++ + ++ +++ + ++ I +A +++R
Sbjct: 182 -------ADILPKEEIEIIRSAILKKMKNDRIPLSNMG---LNNLIIHIAIACKRIRTEN 231
Query: 248 EVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFRKDRDNHL 307
V + D + +KEY+ A+ + ELE ++ + E + M +L ++ +
Sbjct: 232 YV-SLFPKDMDHILHQKEYQAAEAIVKELESKLSVTFPKDETAYITMHLLGTKRMTQSQC 290
Query: 308 ESQDY---DDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFSVNP 364
+ ++ + +K ++ L +H K+L L H K + R RYG+ NP
Sbjct: 291 GEDTFSIEEETDQLTLAMIKAVDRELKLGILHDKELKIGLALHMKPAISRNRYGMNLRNP 350
Query: 365 LTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGEL-RNSQQSPNKLKL 423
+ IK+ Y F + ++++ I++ ++++ YL +H G + R +SP K +
Sbjct: 351 MLAAIKEHYPLAFEAGIIAGIVIKEQTGIEIHENEIGYLALHFGAAIERKKTESPPK-RC 409
Query: 424 VIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMH--VDMVVSTSD-ALES 480
+IV G +LL ++ + + + T +Y S+ + + +D V+ST E
Sbjct: 410 IIVCASGAGSAQLLREKLRSHFGKR--LDILGTAEYYSLDQMSYESIDFVISTIPIKKEL 467
Query: 481 RFPMLVVHPVLTDDDIIRL 499
P+L V+ +L D ++
Sbjct: 468 PVPVLKVNTILGGTDFTKI 486
>gi|29375416|ref|NP_814570.1| conserved hypothetical protein
[Enterococcus faecalis V583]
gi|29342876|gb|AAO80640.1| conserved hypothetical protein
[Enterococcus faecalis V583]
Length = 639
Score = 75.1 bits (183), Expect = 3e-12
Identities = 116/518 (22%), Positives = 209/518 (39%), Gaps = 44/518 (8%)
Query: 2 IILDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPR 61
++L K++ ++L LL LE T +A + S R + Y LE I + S
Sbjct: 3 VLLSKRAINILLMLLDLEGSITTQELAESFTVSVRTIKYDLEDIRAWFEQHDETLYSKRN 62
Query: 62 VGILLTEKQKAACRLLL-DEVTD---YSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLN 117
GI L RLLL +E+ D + R+ + + ++ K +T +L
Sbjct: 63 KGIWLDLPDSK--RLLLKNEIIDVDRFETYPDQKRRVNVLIFQLLSVKGYLTAQQLADEL 120
Query: 118 DVSRNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLD------- 170
VSRNTI++DL ++ L + Y+L L +G+ + G S ++ L + +
Sbjct: 121 LVSRNTIVSDLEQVERLL--QAYDLTLIRQARQGFTISGEE-SNVRLLMEFITQKELTEY 177
Query: 171 DIYHNGSSSFIDLFNHKLSQ-AFGASTYFSKEVLDYFHHYLFISQRSLGKKI--NSQDGQ 227
DIY + K+ + FG+ T F + R+L + N D
Sbjct: 178 DIYQIMNYVTKTKGAEKIPKIKFGSGTLFQG-----CYRSALKKMRNLINPLDQNQFDYA 232
Query: 228 FMIQILPFILMAYRKMRLSPEVQTSLNSDFSLVWQRKEYEIAKE----LADELEENFQLS 283
++ I + +A +M+++ + T + ++ Q+ +E E L E+ E + L
Sbjct: 233 EILSITLRVAIAAARMQMAHTIGT-----YRVLSQKTRFEQRNEVPLLLLQEVFERYDLP 287
Query: 284 LDEIEVGLVAMLMLSFRKDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQ 343
L E + + + DM ++ + + + FV+ + L
Sbjct: 288 LLADEYFYIYSDLFG----------THQRQDMVQLTKQVIESVSKELNYPFVNDRQLFTN 337
Query: 344 LLTHCKALLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYL 403
L H +K I NP +E IK K+ LF S+ K L + + + D AY+
Sbjct: 338 LFAHLSLRFTKKHLFINEYNPFSEEIKGKHPALFLAIQSACKQLIQRSVLLVNDSFCAYI 397
Query: 404 TIHLGGELRNSQQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVS 463
+H QQ +++V V G+ + L+ ++ + N ++ + V
Sbjct: 398 ALHFLAAQERQQQEAKVVRIVYVCSTGLGVTSLIEQKILEEVPNVELAGFASVLNATEVI 457
Query: 464 DLMHVDMVVSTSDALESRFPMLVVHPVLTDDDIIRLIR 501
D+V+S E +P + V P+LTD D + LIR
Sbjct: 458 QAEKPDLVLSIFPIEEMTYPFIKVSPLLTDTD-LSLIR 494
>gi|25010266|ref|NP_734661.1| Unknown [Streptococcus agalactiae
NEM316]
gi|23094618|emb|CAD45836.1| Unknown [Streptococcus agalactiae
NEM316]
Length = 678
Score = 74.7 bits (182), Expect = 4e-12
Identities = 113/481 (23%), Positives = 219/481 (45%), Gaps = 43/481 (8%)
Query: 86 YVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILNDLNELRSELAEKEYNLQLQ 145
+ + ER+ L + ++ V+ VS+NT L+D+ LRS+LA++ + L
Sbjct: 82 FYLTQEERVCLIYLYSFCRREFVSNVHYQDFLKVSKNTTLSDIKMLRSKLAKR--GISLT 139
Query: 146 STKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFIDLFNHKLSQAFGASTYFSKEVLDY 205
T+ +GY L G + Q ++++ + + F L S F S ++ ++Y
Sbjct: 140 YTRAKGYSLVGDEMDKHQVAFQMITQLLES-PIGFWSLNYILSSWKFALSYEKLEKTVEY 198
Query: 206 FHHYLFIS--QRSLGKKINSQDGQFMIQIL-PFILMAYRKMRLSPEVQTSLNSDFSLVWQ 262
F+ +S Q L K + F+I IL + R ++ SP V L
Sbjct: 199 FYESFQLSPIQDRLEKSL-----YFIILILCRYQRSVDRVLQGSPIVSEQLK-------- 245
Query: 263 RKEYEIAKELADELEENFQLS--LDEIEVGLVAMLMLSFRKDRDNHLESQDYDDMRATLT 320
E+ + L ++ LS LD+ E + +++ + ++D D A
Sbjct: 246 ----ELTTIIVTNLSQDISLSKPLDQKEKDYITLILSGCFEGEG----TKDDDFFEALAK 297
Query: 321 SFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFSVNPLTEHIKDKYEELFAIT 380
+ + E+E L+F +K++LL+ L H +R +YG+ + T++IK+ Y +LF +
Sbjct: 298 AIVDEMETVSLLNFSNKEELLQGLKRHIIPAYFRLKYGLTGDSGYTQNIKEHYSDLFLLV 357
Query: 381 SSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPN-KLKLVIVSDEGIAIQKLLLK 439
+++ LE+ + + D +++Y IH GG LR S + + K +I+ G++ ++ +
Sbjct: 358 KKALRPLEEQVGL-IPDSEISYFVIHFGGYLRQSGDTQSMSYKALILCPNGVSSSLVIKE 416
Query: 440 QCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTSDALESRFPMLVVHPVLTDDDIIRL 499
+ + V EQ + + + + DMV ST +E++ P +V ++T + + +L
Sbjct: 417 KLRGLFPQIHFHRVSKIEQLKLIDNQTY-DMVFSTI-FVETKKPNYLVSLMMTAEQVQQL 474
Query: 500 IR-----FSKKGNCANSNQFTNELEKTIAQYVKEDSERYVLKSKIEKLIHQELL-QDVLP 553
F K C + Q ++L TI +Y E LK + ++ Q++ +DV P
Sbjct: 475 KELVISDFPKA--CLDDFQL-DQLIATIKKYAHVHCEEE-LKLALRTMVKQDIFRKDVRP 530
Query: 554 L 554
L
Sbjct: 531 L 531
>gi|15616415|ref|NP_244720.1| transcriptional antiterminator
[Bacillus halodurans]
gi|25494932|pir||E84131 transcription antiterminator BH3853
[imported] - Bacillus halodurans (strain C-125)
gi|10176478|dbj|BAB07572.1| transcriptional antiterminator
[Bacillus halodurans]
Length = 700
Score = 74.3 bits (181), Expect = 6e-12
Identities = 102/451 (22%), Positives = 207/451 (45%), Gaps = 27/451 (5%)
Query: 4 LDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRVG 63
+ + ++L LL+ ++ T+ +A L+ S R + L+ I D L ++ ++ G
Sbjct: 3 ISARERNILHQLLQHKDGLTIPKLAQLLDVSTRTIQRDLKGIEDIL-AEYGLKLNKSSAG 61
Query: 64 ILL----TEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDV 119
+++ +E++K L E+ +++ ER L L ++ ++ + + L +V
Sbjct: 62 LVISGGPSEQEKLLGFLQTLELNEFT----PEERQMLLLAILLQHREPLKLFTLADELNV 117
Query: 120 SRNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSS 179
+ TI NDL R+E + L+L + G + G I + + +LL + H S
Sbjct: 118 TVATISNDLT--RAEAWLNGFRLELVRKRGYGVQIIGRESDIRRAISQLLAE--HLTESK 173
Query: 180 FIDLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFM-----IQILP 234
+ + L + + S+ +L + L + + + Q + M I ++
Sbjct: 174 MYRMLSEPLDD-WEQTDAISERLLHLINLELVRNIQEVLADFRKQMVEPMADRAYIGLIV 232
Query: 235 FILMAYRKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAM 294
+ +A ++R +++ S S + KE+E+A +LA LE+ +++ E EVG + M
Sbjct: 233 HLTLAIERIRQGEKIEID-PSYLSKLKMDKEFELAADLARRLEQKLGMNIPEAEVGYMTM 291
Query: 295 LMLSFRK--DRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALL 352
+ + + ++ LE ++ + + + + E+E+ H+ F L + L+ H K L
Sbjct: 292 HIRGAKAHIETESLLEESNF-QLGVRVKALIHEVEKSLHVQF-QDPSLFQGLVAHLKPAL 349
Query: 353 YRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELR 412
YR R + NPL E IK YEELF + VK + I + +++ +L +H G L
Sbjct: 350 YRIREKMKIYNPLLEKIKQDYEELFHVV--QVKGNKVFEPITIPEEEAGFLVMHFGSALE 407
Query: 413 NSQQSPNKLKLVIVSDEGIAIQKLLLKQCQR 443
++ LK+++V GI K L + ++
Sbjct: 408 RLKRK-RTLKVLVVCSSGIGSSKFLASRIEK 437
>gi|30260932|ref|NP_843309.1| transcription antiterminator, BglG
family [Bacillus anthracis str. Ames]
gi|30254381|gb|AAP24795.1| transcription antiterminator, BglG
family [Bacillus anthracis str. Ames]
Length = 646
Score = 73.2 bits (178), Expect = 1e-11
Identities = 122/531 (22%), Positives = 220/531 (40%), Gaps = 73/531 (13%)
Query: 27 IANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRVG----ILLTEKQKAACRLLLDEVT 82
+A+ L+ S + + ++ +ND L + +I S G I+ T+K + C L + T
Sbjct: 27 LASRLHVSTKTIQKDIKLLNDILEENGAKIESQRGTGYELEIIQTKKFEEFCVSLFQKQT 86
Query: 83 DYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNT---ILNDLNELRSELAEKE 139
+ ER+ L I+ + V + +L + VS++T I+ D+ ++
Sbjct: 87 E-KIPTSYEERIAYILQRILTTEGYVKLSQLAEEIYVSKSTVNLIMKDVTDICG-----R 140
Query: 140 YNLQLQSTKCRGYFLDGHPLSI----IQYLYKLLDDI-YH---NGSSSFIDLFNHKLSQA 191
Y LQ++ G + G I QY D +H S +++ L + L ++
Sbjct: 141 YQLQIEKRPYYGIRIVGEEFHIRSCLSQYGLPRYDHTPFHEQFEQSDTYVSLPHIPLIRS 200
Query: 192 F------GASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAYRKMRL 245
G + Y S +D ++ I+ + +D +M
Sbjct: 201 VILKYIEGGTIYLSDIEIDNLVIHIAIALK------RCEDQHYM---------------- 238
Query: 246 SPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLS---FRKD 302
LN + + + +KEY IAK++ +LE+ LS E EV V M +LS KD
Sbjct: 239 -----KGLNEEQAELIIKKEYAIAKQIVGDLEKELHLSFPEEEVLYVTMHLLSTAVTSKD 293
Query: 303 RDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFSV 362
R ++E D+ A + L ++ E +L F + ++LL H K LL R +Y + +
Sbjct: 294 RYENVEELLGKDLYAFMQHILFKVAEERNLVFYYDEELLFGFGVHLKTLLNRLKYKLNTR 353
Query: 363 NPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPNKLK 422
NPL +K Y F I ++ + + + ++ Y+ IH GG + Q+ K +
Sbjct: 354 NPLLAEVKKNYPYAFEIAVLVGDIIGEYTGESIPESEIGYIAIHFGGAMSRLQEQNQKKR 413
Query: 423 LVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQ-SVSDLM--HVDMVVSTSDALE 479
++V G +LL + + +E V T YQ V DL +D ++ST
Sbjct: 414 CLLVCATGQGSAQLLKYKILSQFRDK-LEIVGITGYYQLKVEDLYKEKIDCIISTIHIPS 472
Query: 480 S-RFPMLVVHPVLTDDDIIRLIRFSKKGNCANSNQFTNELEKTIAQYVKED 529
P++ V+ + D +I + Q + ++ QY+KED
Sbjct: 473 GLPVPIIKVNSIFDDKEIKSI-----------GQQLFTHVNNSVQQYMKED 512
>gi|22992393|ref|ZP_00037040.1| hypothetical protein [Enterococcus
faecium]
Length = 677
Score = 72.4 bits (176), Expect = 2e-11
Identities = 105/502 (20%), Positives = 213/502 (41%), Gaps = 27/502 (5%)
Query: 4 LDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRVG 63
L + LL L P ++ + N L S+R +Y L+ + +L S + R G
Sbjct: 3 LSPREKQLLAEFLSSPSPVSIQKMMNLLKVSKRTIYRELDNLEVSLKSVNASLKKAAR-G 61
Query: 64 ILLTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNT 123
+ E + L + S + +++R L +++ + +++ M+ +S T
Sbjct: 62 SFVIEASEEVLEQLKENTDGKSNDLSTAKRQHAILAELLLTTEPLSLAHFMESYRISNTT 121
Query: 124 ILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFIDL 183
D+ +L + + L L+ + +GY ++G +Y L ++ + + +L
Sbjct: 122 FYADIKQLEESIRQ----LPLEIIRNQGYEIEGPE----KYRRLLTANVLELEINEY-EL 172
Query: 184 FNHKLSQAFGASTYFSKEVLDYFHHYL---FISQRSLGKKINSQDGQFMIQILPFILMAY 240
F+ S +F AS + +D H L I + + KK N D ++ +LM
Sbjct: 173 FH---SISFDASLNYFFRFVDPQHLSLARKVIGEELIQKKTNLSDR----KLEHLVLMLT 225
Query: 241 RKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFR 300
M + N ++ + ++ + AK L + + E+ A L+ F
Sbjct: 226 LTMERVTKNHLLTNETYNSLANKELLQTAKRLFSRIASETKQLYPVNEIVFFAGLLNDFT 285
Query: 301 KDRDNHLESQDYDDMRATLT-SFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGI 359
D + + +D A L ++E+ E ++HF + L + LLTH + R
Sbjct: 286 NSFDQNFFEETFDTQLAYLVKQLIQEVSEETNVHFYEDETLYKMLLTHLSGVFSRAVLQE 345
Query: 360 FSV-NPLTEHIKDKYEELFAITSSSVKLLEKAWQ-IKLTDDDVAYLTIHLGGELRNSQQS 417
++ NP+ E I +YEE + ++ K +E+ +Q KL+++++AY+ +H L S +
Sbjct: 346 ETLTNPILEKIMVQYEE---VANAIRKAVERIFQEKKLSEEEIAYMVLHFANSLERSPKE 402
Query: 418 PNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTSDA 477
N + + S G+A +L + +RY + + + D+V+STS
Sbjct: 403 SN-ISIAGFSPSGLASTSMLELRLKRYFPFIQQIHFYRIADLKKIDLQEEYDVVISTSIL 461
Query: 478 LESRFPMLVVHPVLTDDDIIRL 499
++V P+L +D++ +L
Sbjct: 462 PGYGGKYILVSPLLLEDEVKQL 483
>gi|15925147|ref|NP_372681.1| hypothetical protein [Staphylococcus
aureus subsp. aureus Mu50]
gi|15927738|ref|NP_375271.1| hypothetical protein, similar to
transcription antiterminator BglG family [Staphylococcus
aureus subsp. aureus N315]
gi|25506007|pir||A90011 hypothetical protein SA1961 [imported] -
Staphylococcus aureus (strain N315)
gi|13701958|dbj|BAB43250.1| SA1961 [Staphylococcus aureus subsp.
aureus N315]
gi|14247930|dbj|BAB58319.1| hypothetical protein [Staphylococcus
aureus subsp. aureus Mu50]
Length = 710
Score = 72.0 bits (175), Expect = 3e-11
Identities = 115/514 (22%), Positives = 233/514 (44%), Gaps = 37/514 (7%)
Query: 2 IILDKKSYDLLFYLLKLEEPE-TVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYP 60
++L + +++ L+K T+ IA L S R ++ L+ + L S +
Sbjct: 1 MLLSTREKEMIALLIKYHSQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERAN 60
Query: 61 RVGILLTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVS 120
+ G+ + L + + E+ + + +++ AK+ V L Q VS
Sbjct: 61 KKGLRIAGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVS 120
Query: 121 RNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSF 180
T+ L++L EL +Y L L + G +L G ++L +L+ + N +S +
Sbjct: 121 VQTLAKMLDDL--ELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNL-NSTSVY 177
Query: 181 IDLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFM----IQILPFI 236
+ NH + F + K+ +D +F +R L +++ Q + + I
Sbjct: 178 SVIENHFV---FHSLNQIHKDFVDL--ERIFNVERLLMDYLSALPYQLTESSYLTLTVHI 232
Query: 237 LMAYRKMRLSPEVQTSLNSD-FSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAML 295
+++ +++ V +LN D + V E+++A ELAD+L + + ++ ++ E+ + +
Sbjct: 233 VLSISRIKNGEYV--ALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIH 290
Query: 296 MLSFRKDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRK 355
+ ++ N + + + +F+ ++E + F L+ L H + R
Sbjct: 291 LRGAKRKNLNDTSLNNRCE-ENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRL 349
Query: 356 RYGIFSVNPLTEHIKDKYEELFAITSSSVKL-LEKAW-QIKLTDDDVAYLTIHLGGELRN 413
+ I + NPLT+ IK KY LF +V+L L W + + ++A++ +H GG ++N
Sbjct: 350 QANIETYNPLTDMIKFKYPRLF----ENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKN 405
Query: 414 SQQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDM--- 470
Q L +++V G+ +LL + ++ S+IE + SVSDL +D+
Sbjct: 406 --QGNRFLNILVVCSSGMGTSRLLSTRLEQVF--SEIERITQA----SVSDLKSLDLSQY 457
Query: 471 --VVSTSDALESRFPMLVVHPVLTDDDIIRLIRF 502
++ST + L+ P L V+P+L D DI + +F
Sbjct: 458 DGIISTVN-LDIDSPYLTVNPLLPDSDISYVAQF 490
>gi|21283812|ref|NP_646900.1| ORFID:MW2083~hypothetical protein,
similar to transcription antiterminator BglG family
[Staphylococcus aureus subsp. aureus MW2]
gi|21205254|dbj|BAB95948.1| MW2083 [Staphylococcus aureus subsp.
aureus MW2]
Length = 710
Score = 72.0 bits (175), Expect = 3e-11
Identities = 115/514 (22%), Positives = 234/514 (45%), Gaps = 37/514 (7%)
Query: 2 IILDKKSYDLLFYLLKLE-EPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYP 60
++L + +++ L+K + T+ IA L S R ++ L+ + L S +
Sbjct: 1 MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERAN 60
Query: 61 RVGILLTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVS 120
+ G+ + L + + E+ + + +++ AK+ V L Q VS
Sbjct: 61 KKGLRIAGTDSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVS 120
Query: 121 RNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSF 180
T+ L++L EL +Y L L + G +L G ++L +L+ + N +S +
Sbjct: 121 VQTLAKMLDDL--ELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNL-NSTSVY 177
Query: 181 IDLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFM----IQILPFI 236
+ NH + F + K+ +D +F +R L +++ Q + + I
Sbjct: 178 SVIENHFV---FHSLNQIHKDFVDL--ERIFNVERLLMDYLSALPYQLTESSYLTLTVHI 232
Query: 237 LMAYRKMRLSPEVQTSLNSD-FSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAML 295
+++ +++ V +LN D + V E+++A ELAD+L + + ++ ++ E+ + +
Sbjct: 233 VLSISRIKNGEYV--ALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIH 290
Query: 296 MLSFRKDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRK 355
+ ++ N + + + +F+ ++E + F L+ L H + R
Sbjct: 291 LRGAKRKNLNDTSLNNRCE-ENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRL 349
Query: 356 RYGIFSVNPLTEHIKDKYEELFAITSSSVKL-LEKAW-QIKLTDDDVAYLTIHLGGELRN 413
+ I + NPLT+ IK KY LF +V+L L W + + ++A++ +H GG ++N
Sbjct: 350 QANIETYNPLTDMIKFKYPRLF----ENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKN 405
Query: 414 SQQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDM--- 470
Q L +++V G+ +LL + ++ S+IE + SVSDL +D+
Sbjct: 406 --QGNRFLNILVVCSSGMGTSRLLSTRLEQVF--SEIERITQA----SVSDLKSLDLSQY 457
Query: 471 --VVSTSDALESRFPMLVVHPVLTDDDIIRLIRF 502
++ST + L+ P L V+P+L D DI + +F
Sbjct: 458 DGIISTVN-LDIDSPYLTVNPLLPDSDISYVAQF 490
>gi|22992811|ref|ZP_00037434.1| hypothetical protein [Enterococcus
faecium]
Length = 662
Score = 71.2 bits (173), Expect = 4e-11
Identities = 106/508 (20%), Positives = 219/508 (42%), Gaps = 30/508 (5%)
Query: 1 LIILDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDAL-PSDVPQIVSY 59
L I++++ L++ L + T +A + S R ++ L I L +P +
Sbjct: 20 LHIMNQRQQSLIYQLSENNNYITTKKLAEHFHVSERTIHSDLNTIETWLRDKHLPLMFER 79
Query: 60 PR-VGILLT--EKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQL 116
+ GILL ++ + L+E T M + QL + ++VAKD +++ L +
Sbjct: 80 KKGTGILLNGLPHEREQLKRALNEETQTE--MDKKQLRQLLIFHLLVAKDGFSLEELSEK 137
Query: 117 NDVSRNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNG 176
V + TI +L EL+S + ++LQL S G FL G Q L K L ++
Sbjct: 138 LYVGKRTIRKELTELQSFF--EYHHLQLVSKTKLGTFLKGDEQEKRQLLVKTLRNM---- 191
Query: 177 SSSFIDLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFI 236
+ Q+ +F+K+ L H L + +G ++I +
Sbjct: 192 --------QKEDPQSPSLKEFFAKDTLKVIQHTL--QDVFYENHLEQPNGLASVEIHIYF 241
Query: 237 LMAYRKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLM 296
++ +M+ +V+ S + + +V + +++ ++ +L + + E+ +A+ +
Sbjct: 242 ML--ERMKQYQKVKLSKDEN-EVVEHTQAQKLSSQILAKLATIYPIEFSPDEINYLALRI 298
Query: 297 LSFRKDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQ-LLTHCKALLYRK 355
+ N + + + L L E E++ + + + LL+Q L +H + +R
Sbjct: 299 ANLFT---NSQAATRFQKESSALADHLIEQVEQFLGYSLKEDQLLKQNLRSHLSSTYFRL 355
Query: 356 RYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGEL-RNS 414
YG+ NPLT+++ Y +LF + ++ + + ++ AYLTIH + R+
Sbjct: 356 HYGLQISNPLTKNVFSTYTQLFLVLQLILEDYFEKENFYVPQEETAYLTIHFQAAIERHK 415
Query: 415 QQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVST 474
Q + + V+VS+ A+ L + R L I + + D VD +++T
Sbjct: 416 HQKSRRYQTVLVSEYSKAMATFLEARLNRELPELTIMDLVEYKPELKRQDFPSVDFILAT 475
Query: 475 SDALESRFPMLVVHPVLTDDDIIRLIRF 502
P++ + P++T+ D+ L ++
Sbjct: 476 LPFKHISIPVIEISPMITETDLAYLTKY 503
>gi|26553899|ref|NP_757833.1| transcriptional antiterminator BglG
family [Mycoplasma penetrans]
gi|26453906|dbj|BAC44237.1| transcriptional antiterminator BglG
family [Mycoplasma penetrans]
Length = 642
Score = 69.7 bits (169), Expect = 1e-10
Identities = 103/480 (21%), Positives = 220/480 (45%), Gaps = 32/480 (6%)
Query: 3 ILDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRV 62
+L+K L+ YL++ ++ + N LN R VY ++ ++N L + + +
Sbjct: 1 MLNKIKTSLIRYLIE-HNSASINELTNYLNIKSRMVYLYINELNYLLKKNNFNEIVVKKG 59
Query: 63 GILLTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRN 122
+ L + L+L+ +S ER+ I+V ++ T++ L +S+N
Sbjct: 60 YVSLNLSIEQLNFLILNNYYSFS----QDERIDFICFDIIVFGNKRTLEDYANLFIISKN 115
Query: 123 TILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFID 182
+I +D +L+ +L + NL ST R Y + G L+I +L + SS +
Sbjct: 116 SISSDFKKLKDKLKKLNLNLTY-STDLR-YQILGDELAIRSFLINYV-------SSYLLT 166
Query: 183 LFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAYRK 242
+S+ F S ++ + + SL +K N++ +IQ IL Y K
Sbjct: 167 NDEIIMSKLFDVSILKNQYIANKLDDL-----NSLNRK-NTKSYLDLIQCYLSILFIYYK 220
Query: 243 MRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFRK- 301
+ + T D S++ KE++ + +L +E +N ++ + ++ ++L+
Sbjct: 221 KK---KFLTIDEKDKSILSSLKEFKFSTDLLNEYCKNNKIENNYLDENYYLTILLTSGNI 277
Query: 302 -DRDNHLESQD-----YDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRK 355
DN L+ +++ L L E+E+ +++ F K L+ L+ H YR
Sbjct: 278 IISDNKLKYHKKILLGLKNLKDVLYKMLSEIEKNHYIFFFEKDKLVTDLINHLIPAYYRA 337
Query: 356 RYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQ 415
++ + +K+KY++ F IT + ++E +IK + +++A L+++ + S
Sbjct: 338 KFNLNVNVEYLNIVKEKYKKFFNITVKHIGVVENYLKIKFSQEEIALLSLYFVSNILYSS 397
Query: 416 QSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTS 475
+ K+K +IV+++G I ++L + + TN DI + +Q+ + + D+++S++
Sbjct: 398 KMMKKIKTIIVTNQGFNIYRVLKLELENIFTNLDIVKIVNIDQFLELDE--KFDLILSST 455
>gi|20806857|ref|NP_622028.1| putative transcriptional regulator
[Thermoanaerobacter tengcongensis]
gi|20515326|gb|AAM23632.1| putative transcriptional regulator
[Thermoanaerobacter tengcongensis]
Length = 673
Score = 69.3 bits (168), Expect = 2e-10
Identities = 103/492 (20%), Positives = 210/492 (41%), Gaps = 42/492 (8%)
Query: 21 PETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRVGILLTEKQKAACRLLLDE 80
P + +AN ++ S R V + IN+ L +IV R + E ++ A + +
Sbjct: 20 PFEIADLANLMDVSERTVLREVALINERLRDFNVKIVEQGRK--IFIEGEEEALKRVYSS 77
Query: 81 V--TDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILNDLNELRSELAEK 138
+ +++ +R L + ++++ + + +V TI L+++ L +
Sbjct: 78 LGAIPLQWLLTPDQRQVLMTLQLLLSDEPIKAGYFSYQFNVVEGTISLYLDKIEEWLRMR 137
Query: 139 EYNLQLQSTKCRGYFLDGHPL----SIIQYLYKLLDDIYHNGSSSFIDLFNHKLSQAFGA 194
+ L L + G ++G + +II+ Y + DL + G
Sbjct: 138 K--LTLIRRRGYGIKVEGSEVDRRNAIIELFYNY---------TPMEDLLQFIYDEEKG- 185
Query: 195 STYFSKEVLDYFHHYLFISQRSLGKKINSQ------DGQFMIQILPFILMAYR-KMRLSP 247
YF F L +SL +KI D + + +L YR K +
Sbjct: 186 -KYFKAFFDSVFGKDLVEKVKSLCEKIKEAVYEELPDLNYFGMFVHILLSIYRSKEGKAI 244
Query: 248 EVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFRKDRDNHL 307
E+ +D + Q +E+ K++ LEE L E E+ +A+ + + H
Sbjct: 245 ELDREFIND---ILQSEEFNFMKKVEKILEEE-DFYLPESEIAYLAIHLSPKKYVYKQH- 299
Query: 308 ESQDYDDMRATLTSFLKELEER----YHLHFVHKKDLLRQLLTHCKALLYRKRYGIFSVN 363
++++ TL KE+ E ++++ + LL L H + YR R G+ + N
Sbjct: 300 ---RFEELGITLEELSKEVVEEVSRIFNVNIRCDEQLLLGLAQHLEPAFYRLRMGLVTSN 356
Query: 364 PLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPNKLKL 423
PL E IK Y++LF+ + K++ + I + ++++ Y+T+H+G + ++ KLK+
Sbjct: 357 PLIEEIKSYYKDLFSAVERACKIVFSKYNIIVPEEEIGYITMHIGAAIERQKEMAKKLKV 416
Query: 424 VIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTSDALESRFP 483
+++ GI ++L + + D + T +++ D++VST E+
Sbjct: 417 LVICPNGIGTARILSAKLKNKFKEIDQLNIGTIWEFKRKHQ--EYDLIVSTIRLEEADSK 474
Query: 484 MLVVHPVLTDDD 495
+++V P LT++D
Sbjct: 475 VIIVSPFLTEED 486
>gi|23023367|ref|ZP_00062604.1| hypothetical protein [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 665
Score = 68.6 bits (166), Expect = 3e-10
Identities = 118/569 (20%), Positives = 237/569 (40%), Gaps = 54/569 (9%)
Query: 2 IILDKKSYDLLFYLLKLEEP-ETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYP 60
+++ KK DLL YL+ + T ++ L+ + R + +++ + + L S + + P
Sbjct: 1 MMMRKKERDLLIYLVDNSDRFVTSEELSTLLSLTPRTIRNYIKILKETLVSQGALLDAKP 60
Query: 61 RVGILLTEKQKAACRLLLDEVTDYSYVMKS------SERLQLSLVSIVVAKDRVTIDRLM 114
+G L L L++ + S + + S+R + L +++ + ID L
Sbjct: 61 SLGYRLHISHPVTFDLFLNKNYELSQWLINEDSNNISDRQKYILNKLIIENQKFLIDDLA 120
Query: 115 QLNDVSRNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYH 174
+ V+R T+ DL+ +R L Y + ++S G F+ G + +LD +
Sbjct: 121 EKLFVTRTTLSKDLSIIRKVLM--PYRISVESKANIGVFITGLERDKRHF---ILDYFFS 175
Query: 175 NGSSSFIDLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQ-IL 233
+ +S +K ++F D + R G + F IQ I+
Sbjct: 176 HSENSIQHYMKNK--------SFFKAISFDQITIIVLDECREAGIHLTD----FTIQNIV 223
Query: 234 PFILMAYRKMRLSPEVQTS---LNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVG 290
+I ++ ++++ E+Q + +N + R ++A+++ +E L E EV
Sbjct: 224 LYIALSVQRLKCGFELQAAPVDINPEI-----RNVSDVARKIFSRIESGLALKFPESEVD 278
Query: 291 LVAMLMLSFRKDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKA 350
+ + +++ K+ + Q+ ++ L L+ +E L + ++ H K
Sbjct: 279 YLTIQLMAQGKN----INIQNDGPLQRDLDMILQRIELETDYPVTKDYALKKNIIEHLKP 334
Query: 351 LLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGE 410
++ R GI NPL + IK Y F T +K + + DD+VAYL +HL
Sbjct: 335 MIVRLEQGIQLKNPLLQEIKTNYLSEFMDTKRYIKWSPYLSRFDINDDEVAYLALHLMAA 394
Query: 411 LRNSQQSPNKLKLVIVSDEGIAIQKLLLKQCQR----YLTNSDIEAVFTTEQYQSVSDLM 466
++ NK + +I+ G +LL + ++ YL DI+ + + + L
Sbjct: 395 AE-KYKNLNKPRALIICATGYGSAQLLNNRVEKEFGMYLNIVDIKGYYEVDD----TTLS 449
Query: 467 HVDMVVSTSDALESRF--PMLVVHPVLTDDDIIRLIRFSKKGNCAN------SNQFTNEL 518
+V++++S D F P++ V LT+ D+ ++ F N Q N +
Sbjct: 450 NVNLIISAIDLSTRVFKVPVIQVSIFLTEADVQKINEFLDNEQVRNKYIAVEKKQPINSV 509
Query: 519 EKTIAQYVKEDSERYVLKSKIEKLIHQEL 547
Q++ + S + S K + QEL
Sbjct: 510 LNHFDQFIDQSSFKIWQVSPHRKELLQEL 538
>gi|23024512|ref|ZP_00063721.1| hypothetical protein [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 503
Score = 67.8 bits (164), Expect = 4e-10
Identities = 111/499 (22%), Positives = 206/499 (41%), Gaps = 39/499 (7%)
Query: 14 YLLKLEEPETVMAIANALNQSRRKVYYHLEKIN-DALPSDVPQIVSYPRVGILLTEKQKA 72
Y+ E V +AN LN S RK+YY L+ N D S+ P +V ++ ++ Q +
Sbjct: 14 YIATQELLPNVQTMANRLNLSSRKIYYLLQAANSDLRSSNQPFLVPSTKI----SDSQIS 69
Query: 73 ACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILNDLNELR 132
+ L Y + S ER Q+ + I + + T+ L DVSRNT+L D+ +L+
Sbjct: 70 VLKNKLSHAPSDEY-LTSYERQQIMDICIALPLKKWTLSAFQSLFDVSRNTVLRDIADLK 128
Query: 133 SELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFIDLFNHKLSQAF 192
K + + +K G+ ++ + Y L + + ++ F H L
Sbjct: 129 -----KRKKFRPEFSKKNGFEFKEPRYDLLVHAYNSL--MLLQSHRNPLNYFIHSLDGEP 181
Query: 193 GASTYF--SKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAYRKMRLSPEVQ 250
S + S+++ + + + SL K I S + I + Y E
Sbjct: 182 SHSKFLLVSEKLKNMY-------KDSLEKSI-SISNALTLTIFSVVSSMYSSHHPITEEM 233
Query: 251 TSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFRKDRDNHLESQ 310
+SD + R+E+ I ++ A E NF + + + + +LS K++D+H S
Sbjct: 234 LFNDSDITSFTNRREHNIIQDYALVAETNFSIHIPTSVKLFLTLQLLSVTKEQDDHFSSH 293
Query: 311 DYDDMRATLTSFLKELEERYHL--HFVHKKDLLRQLLTHCKALLYRKRYGIFSVNPLTEH 368
+ D+ + H+ +K L+R++ T K Y RY +V H
Sbjct: 294 SFQDLLILSEHIVDAFMTISHITSKNTERKILIREIQTQLKPFWYAVRYQNITVYEYLYH 353
Query: 369 --IKDKY--EELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPNKLKLV 424
+ +KY E L +T S+ L + L D ++ L + + SQQ KL ++
Sbjct: 354 EPLFEKYVVESLNQLTDSA--LYNHLFPYGLLPDQISVLAM-IFYNFSLSQQKETKLNIL 410
Query: 425 IVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSV----SDLMHVDMVVSTSDALES 480
+V+ I Q L ++ NS + T S +++ D++++ S + +
Sbjct: 411 MVTSLPIYSQNLFKTVIKK---NSTVPCALTIHALNSFDNSSNNVNQFDLIITESTEIST 467
Query: 481 RFPMLVVHPVLTDDDIIRL 499
+ P ++ L + + RL
Sbjct: 468 KQPTFLIDSELKESEFDRL 486
>gi|16801308|ref|NP_471576.1| similar to transcription regulator
[Listeria innocua]
gi|25517405|pir||AH1712 transcription regulator homolog lin2243
[imported] - Listeria innocua (strain Clip11262)
gi|16414756|emb|CAC97472.1| lin2243 [Listeria innocua]
Length = 485
Score = 66.6 bits (161), Expect = 1e-09
Identities = 102/498 (20%), Positives = 219/498 (43%), Gaps = 28/498 (5%)
Query: 2 IILDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPR 61
++L K L+ L + T +A L S + +Y ++ IN A +D +I+ +
Sbjct: 1 MLLTKTERALINLFLTKNDFLTANQLALMLEVSSKTIYRKIKNINSA--TDEKEIIISEK 58
Query: 62 VGILLTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSR 121
G KA + L+ +D S R ++ L + + + I +L + V
Sbjct: 59 -GRGYKLNYKAYIQAKLETTSDIFGYTPSERREKILLQVLFKSPKYLNIAKLYEGYYVGY 117
Query: 122 NTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFI 181
N+I ND L + + L+ + + R + + + ++++ +N S
Sbjct: 118 NSIKNDFALLNQSIEKYHLALEKKQKEIR-------VVGTEENIRIAINEVINNLDLSSY 170
Query: 182 DLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAYR 241
D + S A F ++ + L IS + I I + +
Sbjct: 171 DDLKTEYSNLNNADVQFIVRQMEIIENKLMISIPY----------PYDINIFSHLYILIN 220
Query: 242 KMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFRK 301
+ R ++ LV K + IA E + +E+ ++ L + E ++S R
Sbjct: 221 RFRQGEVEDFDETNETYLVTNEKLHTIAVEAIESIEQYLKMKLPKRETFNFLQYLISSRF 280
Query: 302 DRDNHLESQDYDDMRATLTSF-LKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIF 360
+ + L S + + +T F + ++ + + ++KK L +LL+H K ++ R + I
Sbjct: 281 NHEIELISSNVLPIVEEMTDFYINQVASKIDMP-INKKQLKIELLSHMKPMVNRMNHQIN 339
Query: 361 SVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIK-LTDDDVAYLTIHLGGELRNSQQSPN 419
N L IK +Y +LF I + + + + +++ ++DD+V Y+TI+ ++ ++SP
Sbjct: 340 IKNNLLSDIKLEYGQLFDIIKETARDVAETFRLNTISDDEVGYITIYFA---KHIEESPL 396
Query: 420 KLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQ-SVSDLMHVDMVVSTSDAL 478
+++I+ GI +LL + Q+ + +I V ++ +++ S+ D ++D +++T +A
Sbjct: 397 VKRIIIMCSSGIGTSELLKVKVQKAFPDVEIVDVLSSTRFKNSLQDYQNIDFILTTINAE 456
Query: 479 ESR-FPMLVVHPVLTDDD 495
++ P L+V + T+ D
Sbjct: 457 STKEIPSLLVSAMFTEKD 474
>gi|16077483|ref|NP_388297.1| similar to transcriptional
antiterminator (BglG family) [Bacillus subtilis]
gi|7475882|pir||A69768 transcription antiterminator BglG family
homolog ydaA - Bacillus subtilis
gi|1881227|dbj|BAA19254.1| PROBABLE HTH_LYSR_FAMILY TRANSCRIPTIONAL
REGULATOR. [Bacillus subtilis]
gi|2632716|emb|CAB12223.1| transcriptional regulator [Bacillus
subtilis subsp. subtilis str. 168]
Length = 694
Score = 66.2 bits (160), Expect = 1e-09
Identities = 115/515 (22%), Positives = 216/515 (41%), Gaps = 48/515 (9%)
Query: 11 LLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRVGILLTEKQ 70
LL +LL TV +A + S R ++ L+ I + + + P G+
Sbjct: 10 LLKHLLLQNRYITVTELAELMQVSTRTIHRELKSIKPLMETVGLTLDKQPGKGLKAVGSP 69
Query: 71 KAACRLLLD---EVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILND 127
+ +LL D E +YS + ER L L S++ +++ V + L V+ T+ D
Sbjct: 70 EGKQKLLTDLSYEQHEYS----ADERKLLILCSLLESQEPVKLYTLAHDLQVTNATVSYD 125
Query: 128 LNELRSELAEKEYNLQLQSTKCRGYFLDG--------------HPLSIIQYLYKLLDDIY 173
L+EL ++ + L L + G L G + L I +L + +I
Sbjct: 126 LDELEKWIS--PFGLTLIRKRGFGIQLIGPENAKRKIVGNLIVNRLDIQMFLEAVELNIK 183
Query: 174 HNGSSSFIDLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQIL 233
SS + FG SK L LF + + ++ I ++
Sbjct: 184 GKTDSS---------EKMFGV---VSKGELLKMERILFQLKEKIAFSLSDSS---YIALV 228
Query: 234 PFILMAYRKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVA 293
+ A +++L E T ++ + KEY A E+A ELE F +++ E EVG +
Sbjct: 229 VHLTYAIERIKLG-ETITMEQNELEELMNAKEYSSALEIAGELERAFGVTIPEAEVGYIT 287
Query: 294 MLMLSFRKDRDNHLESQDYDDMRATLTS-FLKELEERYHLHFVHKKDLLRQLLTHCKALL 352
+ + S + ++Q+ + A T + + ++ + L L+ H + +
Sbjct: 288 IHLRSANRKYKTEYKAQEIELETALQTKRLIAFISDKIRMDLTKNYSLYEGLIAHLEPAV 347
Query: 353 YRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQ-IKLTDDDVAYLTIHLGGEL 411
R + I NP+ E IK Y L+ V EK + + +DD++A++ +H G L
Sbjct: 348 SRIKENIEIYNPMKEQIKRDYFLLYMAIEEGV---EKYFPGMSFSDDEIAFIVLHFGSAL 404
Query: 412 RNSQQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQ-SVSDLMHVDM 470
++ K+K ++V GI K+L + ++ L +IE+ + + D+ DM
Sbjct: 405 EIKKEEA-KVKALVVCSSGIGSSKMLASRLKKEL--PEIESFDMSSLIELKGKDVQAYDM 461
Query: 471 VVSTSDALESRFPMLVVHPVLTDDDIIRLIRFSKK 505
+VST ++V P+L ++D ++ ++ K+
Sbjct: 462 IVSTVPIPYENIDYIMVSPLLNEEDANQVKQYIKR 496
>gi|16799990|ref|NP_470258.1| similar to transcription
antiterminator BglG family [Listeria innocua]
gi|25516869|pir||AG1547 transcription antiterminator BglG family
homolog lin0919 [imported] - Listeria innocua (strain
Clip11262)
gi|16413367|emb|CAC96151.1| lin0919 [Listeria innocua]
Length = 632
Score = 66.2 bits (160), Expect = 1e-09
Identities = 110/523 (21%), Positives = 220/523 (42%), Gaps = 50/523 (9%)
Query: 10 DLLFYLLKLEEP-ETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRVGILLTE 68
++L YL K E+ T +A+ + R + ++ KIN+A P+ + T+
Sbjct: 6 EILAYLYKQEDKWVTSNELADFCKCTTRTIRNNIYKINEATPNLINS-----------TK 54
Query: 69 KQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILNDL 128
+ R + + S V + +L L L+ + V + L + +S T+ D+
Sbjct: 55 QGYQINRAIHFDFQAESDVSERKSKLLLELIK--NSTKGVDLFDLADILFISEVTLKKDI 112
Query: 129 NELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFIDLFNHKL 188
+L++EL E + + + + L G + +Y+ LL Y G
Sbjct: 113 QQLKNELKEANVQIVIDKNQIK---LVGKERAKRKYMISLL---YEEGG----------Y 156
Query: 189 SQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAYRKMRLSP- 247
++ E++ + + + I + M +L + + R + +
Sbjct: 157 RESIKGHIQEMLEIVSIDKLQSIVKEVLAEEAITTNQYSMMNIVLHYAISIVRIQQGNTL 216
Query: 248 -EVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFRKDR--- 303
E Q +L S KEYEI+K++A L E +Q+ E E + +L + + ++
Sbjct: 217 IETQKTLIRKHS-----KEYEISKKIAGILSEEYQIHFSEAETKQLGLLYVGLQNEQAAN 271
Query: 304 DNHLESQDYDDMR--ATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFS 361
N E + + D + L L +EE Y + + + L +L H ++L YR RY ++
Sbjct: 272 ANQAELEQFVDKKIIEALKIVLTNVEEMYLID-LQNEQLFIKLAIHVQSLYYRSRYKAYT 330
Query: 362 VNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPNKL 421
N IK Y F I LL++ I +D+++++ +H+G L + + KL
Sbjct: 331 RNLSLLDIKTSYPVTFDIAVYISSLLQEKLAIDFNEDEISFIALHIGSFLESENRDYIKL 390
Query: 422 KLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTS-DALES 480
++ I+ D+ ++ +LK+ + N V E+ H D++++T+ D
Sbjct: 391 EIGILVDDYHDLKTNMLKKLRTLFENDATIEVIENERCDE-----HYDIILTTNRDTALE 445
Query: 481 RFPMLVVHPVLTDDDIIRLI-RFSKKGNCANSNQFTNELEKTI 522
+ + +HP+LT DI ++ R K +N ++++ I
Sbjct: 446 KAGSIFIHPLLTAKDIKKITSRIHTKKKMLENNLLGQQIDRYI 488
>gi|16804177|ref|NP_465662.1| similar to transcription regulator
[Listeria monocytogenes EGD-e]
gi|25513962|pir||AB1342 transcription regulator homolog lmo2138
[imported] - Listeria monocytogenes (strain EGD-e)
gi|16411608|emb|CAD00216.1| lmo2138 [Listeria monocytogenes]
Length = 485
Score = 65.5 bits (158), Expect = 2e-09
Identities = 101/506 (19%), Positives = 214/506 (41%), Gaps = 40/506 (7%)
Query: 2 IILDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPR 61
++L K + L+ L + T +A L+ S + +Y ++ IN+ + R
Sbjct: 1 MLLTKSEHALINLFLTKNDFLTAKQLAEILDVSSKTIYRKIKNINE----------TTGR 50
Query: 62 VGILLTEK-------QKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLM 114
I+++EK KA + L+ D + R ++ L + + + + L
Sbjct: 51 KDIIISEKGRGFKLDYKAYIQAKLETTGDIFGYTPTERREKILLQVLFKSPKYLNVTELY 110
Query: 115 QLNDVSRNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYH 174
+ V N+I ND + L + + + L+ + + R + + + ++++ +
Sbjct: 111 EDYYVGYNSIKNDFSLLNQAIEKYDLALEKRQKEIR-------VVGTEENIRTAINEVIN 163
Query: 175 NGSSSFIDLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILP 234
N S D + S A F ++ + L IS + I I
Sbjct: 164 NLDLSTYDDLKTEYSDLNKADVQFIVRQMELIENKLMISIPY----------PYDINIFS 213
Query: 235 FILMAYRKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAM 294
+ + + R + D +V K + +A E D +E+ ++ L + E
Sbjct: 214 HLYILINRFRQGEVEDFKESDDDYIVTNEKLHTLAVEAIDAIEQYLKMKLPKRETFHFLQ 273
Query: 295 LMLSFRKDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYR 354
++S R + + L + +T F E ++KK L +LL+H K ++ R
Sbjct: 274 YLISSRFNHEIELVPGKILPIVEEMTDFYIEQVAAKINMPINKKQLKIELLSHMKPMVNR 333
Query: 355 KRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIK-LTDDDVAYLTIHLGGELRN 413
+ I N L IK +Y +LF I + + K +++ ++DD+V Y+TI+ ++
Sbjct: 334 MNHQINIKNNLLSDIKLEYGKLFEIIKETARDAAKTFELNTISDDEVGYITIYFA---KH 390
Query: 414 SQQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQ-SVSDLMHVDMVV 472
+ SP +++I+ GI +LL + Q+ + +I V ++ +++ S+ D ++D ++
Sbjct: 391 IEASPLVKRIIIMCSSGIGTSELLKVKVQKAFPDVEIVDVLSSTRFKNSLHDYQNIDFIL 450
Query: 473 STSDALESR-FPMLVVHPVLTDDDII 497
+T + ++ P L+V + T+ D I
Sbjct: 451 TTINTESTKEIPSLLVSAMFTEKDKI 476
>gi|30018965|ref|NP_830596.1| Transcription antiterminator, BglG
family [Bacillus cereus ATCC 14579]
gi|29894507|gb|AAP07797.1| Transcription antiterminator, BglG
family [Bacillus cereus ATCC 14579]
Length = 643
Score = 64.7 bits (156), Expect = 4e-09
Identities = 118/516 (22%), Positives = 220/516 (41%), Gaps = 43/516 (8%)
Query: 27 IANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRVG----ILLTEKQKAACRLLLDEVT 82
+A L+ S + + ++ +ND L + +I S G I+ +K + C L + T
Sbjct: 24 LAGRLHVSTKTIQKDIKLLNDILEENGAKIESQRGTGYELEIIQKKKFEDFCVSLFQKQT 83
Query: 83 DYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNT---ILNDLNELRSELAEKE 139
+ ER+ L +++ + V + L + VS++T I+ D+ ++
Sbjct: 84 E-KIPTSYEERIAYILQRVLMTEGYVKLSELAEEMYVSKSTVNLIMKDVTDICG-----R 137
Query: 140 YNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFIDLFNHKLSQAFGASTYFS 199
Y LQ++ G + G +I L + Y + F+ + Q TY S
Sbjct: 138 YKLQIEKRPYYGIRIVGEEFNIRSCLSQYGLPRYDHTP------FHEQFEQ---TETYLS 188
Query: 200 KEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAYRKMRLSPEVQTSLNSDFSL 259
+ I + G I D + + ++ I +A ++ + S L+++ S
Sbjct: 189 LPHISLIRS--IILKYIEGGTIYLSDIE-IDNLVIHIAIALKRFQ-SQHYMKGLHAEQSE 244
Query: 260 VWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLS---FRKDRDNHLESQDYDDMR 316
+ +KEY IAK++ +LE+ + S E EV V M +LS ++R ++E D+
Sbjct: 245 LIIKKEYTIAKQILGDLEKALKFSFPEEEVLYVTMHLLSTAVTTRNRYENIEELLGKDIY 304
Query: 317 ATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFSVNPLTEHIKDKYEEL 376
A + L ++ E +L F + ++LL H K LL R +Y + + NPL +K Y
Sbjct: 305 AFMQHILFKVAEERNLIFYYDEELLFGFGIHLKTLLNRLKYKLNTRNPLLAEVKKNYPYA 364
Query: 377 FAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPNKLKLVIVSDEGIAIQKL 436
F I ++ + + + ++ Y+ IH GG + Q+ K + ++V G +L
Sbjct: 365 FEIAVLVGDIIGEYTGESIPESEIGYIAIHFGGAMSRLQEQNQKKRCLLVCATGQGSAQL 424
Query: 437 LLKQCQRYLTNSDIEAVFTTEQYQ-SVSDLM--HVDMVVSTSDALESRFPMLVVHPVLTD 493
L + + +E V T YQ V DL +D ++ST + S P+ PV+
Sbjct: 425 LKYKILSQFRDK-LEIVGITGYYQLKVEDLYKEKIDCIISTIH-IPSGLPV----PVIKV 478
Query: 494 DDIIRLIRFSKKGNCANSNQFTNELEKTIAQYVKED 529
+ I F K + + + ++ Y+KED
Sbjct: 479 NSI-----FDDKEIKSIGQRLFTHVNTSVQPYIKED 509
>gi|26250310|ref|NP_756350.1| Putative transcriptional
Antiterminator [Escherichia coli CFT073]
gi|26110740|gb|AAN82924.1|AE016769_39 Putative transcriptional
Antiterminator [Escherichia coli CFT073]
Length = 532
Score = 64.3 bits (155), Expect = 6e-09
Identities = 104/502 (20%), Positives = 204/502 (39%), Gaps = 27/502 (5%)
Query: 11 LLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRVGILLTEKQ 70
LL +LL E T++ IA LN S + + L + L + G++L+ +
Sbjct: 26 LLRFLLPRREYTTIVTIAGYLNVSEKTIQRDLRLLEQWLGQWRINVEKRAGAGVMLSAEN 85
Query: 71 KA----ACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILN 126
A LL+ E + VM ++ R++++ + + +I +L + +S +I+N
Sbjct: 86 IADLLHLDHLLVAECEEIDCVMNNARRVKIASQLLSETPNETSISKLSERYFISGASIVN 145
Query: 127 DLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFIDLFNH 186
DL + S LA +L + G ++G + Q + L++ I ++ +
Sbjct: 146 DLRVIESWLAPLGLSLIRSPS---GTHIEGSEGQVRQAMALLINGIINHNEPQGVVYSRL 202
Query: 187 KLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFIL-MAYRKMRL 245
YF +E + + L + L + + + I IL M YR
Sbjct: 203 DPGSYKALVHYFGEEEVLFVQSLLLDMENELSWSLGE---PYYVNIFTHILIMMYRNTHG 259
Query: 246 SPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSF------ 299
+ S D + + + +A ++ ++++ +L + EV + ++S
Sbjct: 260 N---ALSREEDQTRQYDENIFNVASQMIHKIDQRIAHTLPDDEVWFIYQYIISSGVAIDG 316
Query: 300 RKDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGI 359
+KD Q ++ R + + F L LL H K L+ R Y I
Sbjct: 317 QKDVSIISHMQASNEARLITWRLITVFSDIVDCDFSEDSALYDGLLVHIKPLINRLNYRI 376
Query: 360 FSVNPLTEHIKDKYEELFAITSSSVKLLEKAW-QIKLTDDDVAYLTIHLGGELRNSQQSP 418
NPL E IK + +++ +T V + K W + +++D+V YLT+H + ++
Sbjct: 377 HIRNPLLEDIKAELADVWRLTQYVVNQVFKTWGENAVSEDEVGYLTVHFQAAM---ERQI 433
Query: 419 NKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQY-QSVSDLMHVDMVVSTSDA 477
+ ++++V GI LL + R I V + Q + D ++++++ST +
Sbjct: 434 ARKRVLLVCSTGIGTSHLLKSRILRAFPEWTIVDVISAANLSQVLPD--NIELIISTINL 491
Query: 478 LESRFPMLVVHPVLTDDDIIRL 499
P+ V D DI R+
Sbjct: 492 PTVTMPVAYVTAFFNDADIKRV 513
>gi|16078265|ref|NP_389082.1| similar to transcriptional
antiterminator (BglG family) [Bacillus subtilis]
gi|7475883|pir||F69848 transcription antiterminator BglG family
homolog yjdC - Bacillus subtilis
gi|2633554|emb|CAB13057.1| transcriptional regulator [Bacillus
subtilis subsp. subtilis str. 168]
Length = 648
Score = 63.9 bits (154), Expect = 8e-09
Identities = 109/508 (21%), Positives = 223/508 (43%), Gaps = 38/508 (7%)
Query: 12 LFYLLKLEEPETVMAI---ANALNQSRRKVYYHLEKINDALPSDV-PQIVSYPRVGILLT 67
+ YLL L EP+ + + A+ + S + + L+ I D L Q++ P +G+ L
Sbjct: 11 ILYLL-LSEPDDYLVVQDFADRVQCSEKTIRNDLKVIEDYLNEHSHAQLIRKPGLGVYLH 69
Query: 68 EKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKD--RVTIDRLMQLNDVSRNTIL 125
+++ L T++ + S++ ++ ++ +A + V+ + + V+R++I
Sbjct: 70 IEEQERTWLSQQLHTEHFSSRQRSDKERMLHIAYDLAMNPKPVSAKDIAARHFVNRSSIK 129
Query: 126 NDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFIDLFN 185
DL + L K ++L L S + G ++G+ + + L + + D+ HN + +
Sbjct: 130 KDLYAVEEWL--KRFDLTLVSRQRLGLKVEGNERNKRKALAR-ISDLIHNTAFT------ 180
Query: 186 HKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKK--INSQDGQFMIQILPFILMAYRKM 243
S + + L Y ++ +SL KK + D F +L +LM R++
Sbjct: 181 ---------SQFIKSKFLHYEVDFVTKEIKSLQKKHSLYFTDETFESLLLHTLLMV-RRI 230
Query: 244 RLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLS----F 299
++ + S + + V ++KEY+ LE F + E E + + +L +
Sbjct: 231 KMKQPISLS-PKEMAAVKKKKEYQWTFACLQRLEPVFAIRFPEEEAVYLTLHILGGKVRY 289
Query: 300 RKDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGI 359
+ +LE+ + L + + EL+ + F +DL+ L H +L R Y +
Sbjct: 290 PLQTEENLENAVLPKVVGHLINRVSELK---MMDFHKDQDLINGLNIHLNTVLQRLSYDL 346
Query: 360 FSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQ-QSP 418
NP+ IK Y LF + ++ + + + + + +++ AYLT+H + Q S
Sbjct: 347 SVANPMLNDIKKMYPYLFHLIIDVLEDINQTFDLHIPEEEAAYLTLHFQAAIERMQGSSE 406
Query: 419 NKLKLVIVSDEGIAIQKLLLKQCQR-YLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTSDA 477
K VIV GI + +LL + +R Y + + + + + +D+V+ST
Sbjct: 407 THKKAVIVCHMGIGMSQLLRTKIERKYHQIAVMACIAKADLKDYIKKHEDIDLVISTIAL 466
Query: 478 LESRFPMLVVHPVLTDDDIIRLIRFSKK 505
P +VV P+L + +L F ++
Sbjct: 467 ENITVPHIVVSPLLEPGEEKKLSAFIRQ 494
>gi|9965183|gb|AAG09976.1|AF248038_5 DeoR regulator [Streptococcus
agalactiae]
Length = 578
Score = 63.5 bits (153), Expect = 9e-09
Identities = 125/550 (22%), Positives = 227/550 (40%), Gaps = 72/550 (13%)
Query: 2 IILDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPR 61
+ ++K+++ LL L T+ +A S R + ++ IND L ++ +
Sbjct: 20 VTMNKRTF-LLLQQLAQSRLATLEQLATQFKTSTRTIRKDIDMINDCLIKAGADLIYFGN 78
Query: 62 VGILLTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSR 121
G + ++K K + ++ Y + ERL L ++V+ +TI L + +SR
Sbjct: 79 EGEVCSDKAKNHLNDIPKMISLTDYRLSREERLILESYFLLVSLTPITIKGLSRKMYLSR 138
Query: 122 NTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFI 181
NT++NDL LRS L + E L L+S K +G ++G + S +
Sbjct: 139 NTVVNDLPSLRSFLTQNE--LILKSDK-QGLIIEG------------------SESQKRL 177
Query: 182 DLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQR------SLGKKINSQ------DGQFM 229
L +H Y S D+ YLF S+ S+ +K Q D F
Sbjct: 178 LLMHH----------YISLSDNDFLREYLFPSEDDPSLLISVVRKAEKQNQVVFRDYSFQ 227
Query: 230 -IQILPFILMAYRKMRLSPEVQTSLN-SDFSLVWQRKEYEIAKELADELEEN--FQLSLD 285
+Q +L + L E + + S FSL+ I++ + ++L + F LSL
Sbjct: 228 YVQTYLNVLCSRSANNLMIETEGMFHFSAFSLI-------ISQSILEDLSQKVRFPLSLK 280
Query: 286 EIEVGLVAMLMLSFRKDRDNHLESQDYDD---MRATLTSFLKELEERYHLHFVHKKDLLR 342
E+E + L+F K +S DD ++ F+K++ LL
Sbjct: 281 EVEFLAFLIGNLTFVK------KSSPIDDSFKIQFLTRQFIKQISGDIAYDLTQDISLLE 334
Query: 343 QLLTHCKALLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAY 402
L H + + Y + + LT+ I+ + AI + + +D+ Y
Sbjct: 335 NLSKHMETIFYNQPLQAPDSSLLTDIIESNKSIVTAI-KKHLSIFHILKSKVFEPNDIYY 393
Query: 403 LTIHLGGELRNSQQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSV 462
+ IH+ G + + K+++ GI +LLKQ + N DI V T +++
Sbjct: 394 IAIHICGAVERQRLETAHFKVLLAWHAGIGTS-MLLKQRLKEHFNFDIIDVVTI--HEAE 450
Query: 463 SDLMHVDMVVSTSDALESRFPMLVVHPVLTDDDIIR----LIRFSKKGNCANSNQFTNEL 518
+ D +++T ++ +VV LT+ DIIR + + SK+GN + + + L
Sbjct: 451 EEQHRADFIITTVPLQKTNNETIVVSASLTETDIIRINTLMRKISKEGNVEENPETSQAL 510
Query: 519 EKTIAQYVKE 528
K + +K+
Sbjct: 511 FKDLLPILKK 520
>gi|16802959|ref|NP_464444.1| similar to transcription
antiterminator BglG family [Listeria monocytogenes
EGD-e]
gi|25516057|pir||AF1189 transcription antiterminator BglG family
homolog lmo0918 [imported] - Listeria monocytogenes
(strain EGD-e)
gi|16410321|emb|CAC98996.1| lmo0918 [Listeria monocytogenes]
Length = 632
Score = 63.2 bits (152), Expect = 1e-08
Identities = 104/524 (19%), Positives = 224/524 (41%), Gaps = 48/524 (9%)
Query: 10 DLLFYLLKLEEP-ETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRVGILLTE 68
++L YL K E T +A + R + ++ KIN+ P+ L
Sbjct: 6 EILAYLHKQENKWVTSNELAAFCECTTRTIRNNIYKINEVTPN--------------LIN 51
Query: 69 KQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDR-VTIDRLMQLNDVSRNTILND 127
K ++ L+ ++ +ER L+ ++ + V + L + +S T+ D
Sbjct: 52 STKQGYQINLNIPFEFQSESDVTERKSKLLLELIKNSTKGVDLFELADILYISEVTLKKD 111
Query: 128 LNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFIDLFNHK 187
+ +L++EL E + + + + + L G + +Y+ LL Y G +
Sbjct: 112 IQQLKNELKEADVKIVISKDRIK---LIGKERAKRKYMISLL---YEEGG------YRES 159
Query: 188 LSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAYRKMRLSP 247
+ F +D + I + L ++ + + M+ I+ ++ +++
Sbjct: 160 IKSRIQEMIEFVS--IDKLQN---IVKEVLAQESITTNQYSMMNIVLHYAISIVRIQ--- 211
Query: 248 EVQTSLNSDFSLVWQR-KEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFRKDRD-- 304
+ T + + +L+ + KEYEI+K++A L E +Q+ E E + +L + + ++
Sbjct: 212 QGNTLIETQKTLIRKHSKEYEISKKIAKILSEEYQIHFSEAETKQLGLLYVGLQNEQSAN 271
Query: 305 -NHLESQDYDDMRA--TLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFS 361
NH E + D + L L +EE Y + + + L +L H ++L YR RY ++
Sbjct: 272 ANHGELDQFVDKKIIDALKIVLANVEETYLID-LQNEQLFIKLAIHVQSLYYRSRYKAYT 330
Query: 362 VNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPNKL 421
N IK Y F I LL++ I +D+++++ +H+G L + + +L
Sbjct: 331 RNLSLLDIKTSYPVTFDIAVYISSLLQEKLAIDFNEDEISFIALHIGSFLESENRDYIRL 390
Query: 422 KLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTSDALESR 481
++ ++ D+ ++ +LK+ + N + E Y+ D+ ++ + D +
Sbjct: 391 EIGLLVDDYHDLRTNMLKKLRARFDNEATIELIENEDYEENFDI----ILTTNRDVALEK 446
Query: 482 FPMLVVHPVLTDDDIIRLI-RFSKKGNCANSNQFTNELEKTIAQ 524
+ +HP+LT DI ++ R K +N ++++ I +
Sbjct: 447 AGSIFIHPLLTTKDIKKITSRIQTKKKILENNIRGQQIDRYIVR 490
>gi|29377430|ref|NP_816584.1| transcriptional antiterminator, bglG
family [Enterococcus faecalis V583]
gi|29344897|gb|AAO82654.1| transcriptional antiterminator, bglG
family [Enterococcus faecalis V583]
Length = 669
Score = 62.8 bits (151), Expect = 2e-08
Identities = 86/418 (20%), Positives = 183/418 (43%), Gaps = 46/418 (11%)
Query: 87 VMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILNDLNELRSELAEKEYNLQLQS 146
+ +ER L + + +++ DVS+ TIL D+ ++R +LA + N+ L
Sbjct: 70 IYSETERQALIFLLTYSEIEELSVYHYQNFLDVSKGTILADIKKVRHQLATE--NIALSY 127
Query: 147 TKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFID---LFNHKLSQAFGASTYFSKEVL 203
+ RG++L+G I ++ L + S +F L H++SQ
Sbjct: 128 ERKRGFYLEGDEFRIRRFGKNWLARLLQQKSGTFALFCWLSQHQMSQ------------- 174
Query: 204 DYFHHYLFISQRSLGKKINSQDGQFMIQILPFIL------MAYRKMRLSPEVQTSLNSDF 257
Y I G ++ Q+ Q +Q++P L +A+ + RL + T + +
Sbjct: 175 -----YAKIRD---GIQLAVQEAQ--LQLVPSRLDEISYFLAFSQKRLG-KYGTVVWPEN 223
Query: 258 SLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFRKD-RDNHLESQDYDDMR 316
L+ + Y ++ + +L +++ + LM + + + RD LE +
Sbjct: 224 QLIQSLRAYPVSHRILSDLVGPVA-NVETESLFFTICLMTALQGELRDTKLEF-----LL 277
Query: 317 ATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFSVNPLTEHIKDKYEEL 376
++++E + F ++LL + H +R YG + N L + I+ Y L
Sbjct: 278 DISGEIIRKMELLAVVQFEQPRELLMNVYYHLVPAYFRISYGFYLPNVLIKDIRQSYRSL 337
Query: 377 FAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGEL--RNSQQSPNKLKLVIVSDEGIAIQ 434
+ + ++ LEK + + +++ + TI GGE+ + ++Q KLK +IV GI+
Sbjct: 338 YHLCEQALAPLEKLTKRSIPSEEIGFFTILFGGEIFGQKNEQRQEKLKALIVCPSGISSS 397
Query: 435 KLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTSDALESRFPMLVVHPVLT 492
+L + +R + + + ++VS+ + D++ ST +E+ + + P+++
Sbjct: 398 LILQSELRRLFPMIEFKETNAVREIENVSEKSY-DIIFSTV-PIETAKKVYLTKPIMS 453
>gi|15901945|ref|NP_346549.1| transcriptional regulator, BglG family
[Streptococcus pneumoniae TIGR4]
gi|25389596|pir||D95249 transcription regulator, BglG family
[imported] - Streptococcus pneumoniae (strain TIGR4)
gi|14973643|gb|AAK76189.1| transcriptional regulator, BglG family
[Streptococcus pneumoniae TIGR4]
Length = 676
Score = 61.6 bits (148), Expect = 3e-08
Identities = 110/486 (22%), Positives = 212/486 (42%), Gaps = 51/486 (10%)
Query: 37 KVYYHLEKINDALPSDVPQIVSYPRVGILLTEKQ------KAACRLLLDEVTDYSYVMKS 90
KV ++++ + + VP + + GI+L +KQ + L D + V+
Sbjct: 27 KVSLPIKEVKEGIDYLVPYLANK---GIVLDKKQGRYSLSNRTKQSLTDIIKSDELVLPK 83
Query: 91 SERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILNDLNELRSELAEKEYNLQLQSTKCR 150
S RL L + D ++ VS+NT L+D+ LR + + + L+L ++ +
Sbjct: 84 STRLALIYLYTFCRLDFISNSHYQDFLKVSKNTTLSDIQSLRKIMLDND--LELGYSRAK 141
Query: 151 GYFLDGHPLSIIQYLYKLLDDIYHNGSSSFIDLFNHKLSQAFGASTY--FSKEVLDYFHH 208
GY L G + + ++++ ++ SS I ++ LS + TY + V DY+
Sbjct: 142 GYTLHGSEWNKHRLAFQMVSELLE--SSIGIWGLDYVLSSWGYSLTYDLIDQVVKDYYEK 199
Query: 209 YLFISQRSLGKKINSQDGQFMIQILPFILMAYR----KMRLSPEVQTSLNSDFSLVWQRK 264
+ I +Q ++ ++ FIL Y+ ++ LS + + + D + +
Sbjct: 200 LQLVP-------IVNQLKVYLFGLV-FILCRYQRDVERVCLSETLVSPVIQDITTILLDT 251
Query: 265 EYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFRKDRDNHLESQDYDDMRATLTSFLK 324
++ E++++ + +L F + D + ++ + + S
Sbjct: 252 VVDLGIIDTVFSEDDYRY--------ITVLLSSCFEGEVD--VAPVYFNQLTEAIIS--- 298
Query: 325 ELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSV 384
+E+ LHF ++ L L H YR ++G+ S N H+K+ Y +LF + S+
Sbjct: 299 RMEDISLLHFKQREGLRENLRRHLIPAYYRLKFGLPSSNEYVLHVKEHYPDLFELVKDSL 358
Query: 385 KLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPNK-LKLVIVSDEGIAIQKLLLKQCQR 443
L A + D + AY IH GG L+ + P K K I+ G++ L+LK+
Sbjct: 359 MPLMDAIDNPIPDSETAYFVIHFGGYLKKADTLPQKWYKAAIICPNGVS-SSLMLKENLL 417
Query: 444 YLTNSDIEAVFTTE----QYQSVSDLMHVDMVVSTSDALESRFPMLVVHPVLTDDDIIRL 499
L IE + T++ Q ++ SD DMV ST +E+ P +V ++T++ I+L
Sbjct: 418 ALF-PQIEFIGTSKIDDLQVKASSDY---DMVFSTIK-VETEKPNYLVSVMMTEEQAIQL 472
Query: 500 IRFSKK 505
+ K
Sbjct: 473 VELVLK 478
>gi|16804821|ref|NP_466306.1| similar to lichenan operon
transcription antiterminator licR [Listeria
monocytogenes EGD-e]
gi|25516798|pir||AG1422 lichenan operon transcription
antiterminator licR homolog lmo2784 [imported] -
Listeria monocytogenes (strain EGD-e)
gi|16412284|emb|CAD00997.1| lmo2784 [Listeria monocytogenes]
Length = 638
Score = 61.6 bits (148), Expect = 3e-08
Identities = 117/541 (21%), Positives = 231/541 (42%), Gaps = 48/541 (8%)
Query: 27 IANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRVGI-LLTEKQKAACRLLLDEVTDYS 85
+ AL + R + ++ IN L +I S P VG L+ +KA LLD+ +
Sbjct: 30 LGEALAVNPRTIRNDIKVINQILTIGGNRIESLPGVGYRLVIGDEKALREALLDDSVGRA 89
Query: 86 YV----MKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILNDLNELRSELAEKEYN 141
+ M + +R + +++ D V ++ L + VS++TI D+ E++ +L E E
Sbjct: 90 NMNIVPMFAEDRADYIIRYLLLKNDYVKLETLSEELFVSKSTINLDILEVKRKLKENE-- 147
Query: 142 LQLQSTKCRGYFLDGHPLSIIQYL--YKLLDDIYHNGSSSFIDLF---NHKLSQAFGAST 196
L+++ G + G L+I Y L++ + + I+ F N ++ + S
Sbjct: 148 LKVEKRAGYGIRITGAELAIRFCFSRYLLVESTSPLITETEINFFGEVNLEMMEQIVVSN 207
Query: 197 YFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAYRKMRLSPEVQTSLNSD 256
+ Y H IS ++L + I +A +++ + V + D
Sbjct: 208 -----IAKYNIHMTDISVKNL---------------IIHIAIAVCRVKDNCYVPATDLED 247
Query: 257 --FSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFRKDRDNHLESQDYDD 314
FS+ R I KE+ +L E + E L+ + + + D +N+ E D
Sbjct: 248 IEFSMPELRAAQGIIKEI--DLSEGIRFPESETAYLLLHLSSKNRKSDFNNYREYIIVDK 305
Query: 315 MRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFSVNPLTEHIKDKYE 374
M L +++E Y F + ++ + H K + R ++ + NP +++K Y
Sbjct: 306 M-------LAKIKELYGYDFKQDQKMISNIALHLKPAINRIKFNMNIQNPYLKNLKANYP 358
Query: 375 ELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPNKLKLVIVSDEGIAIQ 434
F + + ++LE+ + + + +V YL IH L +S K K++IV G+
Sbjct: 359 LAFELGLVAKEVLEQELKTNVDEAEVGYLAIHFLYGLDKEIES-EKQKVLIVCASGLGTS 417
Query: 435 KLLLKQCQRYLTNS-DIEAVFTTEQYQSVSDLMHVDMVVSTSDALESRFPMLVVHPVLTD 493
+LL + ++ N+ +I V++ ++Y+ + D V+ST P + V P LT
Sbjct: 418 QLLESKVRKEFENTLEIVGVYSFKEYEQSGTM--CDFVISTVPLRMKLHPFIQVSPFLTK 475
Query: 494 DDIIRLIRFSKKGNCANSNQFTNELEKTIAQYVKEDSERYVLKSKIEKLIHQELL-QDVL 552
DI + K+ N + ++++ + + VL + L+ ++ +D L
Sbjct: 476 ADIRNITALMKQDETKNQFEVDKVFKESLFLISDKKDKEQVLVNLASLLLENNIVGEDYL 535
Query: 553 P 553
P
Sbjct: 536 P 536
>gi|28377161|ref|NP_784053.1| transcription regulator, mannitol
operon [Lactobacillus plantarum WCFS1]
gi|28269992|emb|CAD62892.1| transcription regulator, mannitol
operon [Lactobacillus plantarum WCFS1]
Length = 691
Score = 61.6 bits (148), Expect = 4e-08
Identities = 120/516 (23%), Positives = 212/516 (40%), Gaps = 36/516 (6%)
Query: 1 LIILDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYP 60
++ ++ +LL LL ++ I LN SRR +Y + L + +IV+
Sbjct: 1 MVKFTQRQDELLQLLLANPAGLSMSQIETGLNSSRRTIYREFSNLELVLANADLKIVN-E 59
Query: 61 RVGILLTEKQKAACRL--LLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLND 118
+ L+ Q A + L + S R +++ V + L D
Sbjct: 60 KHHFQLSGSQTALAKFQSQLTAERKIAPAFDSQTRQNALACRLLMTGHSVKLKELALDFD 119
Query: 119 VSRNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSS 178
VS TI NDL L + A +Y+L ++ K RG + G SI +L++ ++
Sbjct: 120 VSVATISNDLTALATPFA--DYDLSIERLKSRGIQVAGTEGSIRNLFATILNNEIND--Y 175
Query: 179 SFIDLFNHKLSQAFGASTYFSKEVLDYFHHYL--------FISQRSLGKKINSQ--DGQF 228
F KL+Q S + + YF + L + + RSL KK S DGQ
Sbjct: 176 EFFKTIG-KLNQGLAIS---ASDEQSYFLNLLDAQTLIICYQAVRSLKKKYFSSVPDGQL 231
Query: 229 MIQILPFILMAYRKMRLSPEVQTS----LNSDFSLVWQRKEYEIAKELADELEENFQLSL 284
I I + MRL E + + +N D L +QR I +L E++ ++
Sbjct: 232 QQLI---ITLTTGVMRLQHERRVTYLRGINRDDFLKYQRIALAIMTQLPAEIKT--VVTG 286
Query: 285 DEIEVGLVAMLMLSFRKDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQL 344
EI+ + L+FR D+D L + D + + F+ + ++ F LL L
Sbjct: 287 AEIDFLAQQIKGLTFRIDQDASLSNYDL-QLTYRVKKFIDAVATNFNWSFGTDDRLLNNL 345
Query: 345 LTHCKALLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIK-LTDDDVAYL 403
H + L +R G+ P T +++ E+ + S+ V+ ++ + T D++ YL
Sbjct: 346 TAHMQIAL--QRNGVNGPVPPTTELQEVREQYPKLYSAVVRGFATIFKDQDFTTDELTYL 403
Query: 404 TIHLGGELRNSQQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVS 463
IH Q S LK++++ G+ ++L + R + V V
Sbjct: 404 LIHFASTYEQ-QLSHQALKVLVLCPNGMTTARILKTRLMRLVPEITAIEVARIGNLGQV- 461
Query: 464 DLMHVDMVVSTSDALESRFPMLVVHPVLTDDDIIRL 499
+L DM++ST+ + VV P+L ++++ L
Sbjct: 462 NLQDFDMILSTTTLPGFKLNYRVVSPLLLENEVTAL 497
>gi|15902323|ref|NP_357873.1| Transcription antiterminator BglG
family [Streptococcus pneumoniae R6]
gi|25508147|pir||G97906 transcription antiterminator BglG family
bglG [imported] - Streptococcus pneumoniae (strain R6)
gi|15457831|gb|AAK99083.1| Transcription antiterminator BglG family
[Streptococcus pneumoniae R6]
Length = 659
Score = 61.2 bits (147), Expect = 5e-08
Identities = 106/504 (21%), Positives = 217/504 (43%), Gaps = 31/504 (6%)
Query: 3 ILDKKSYDLLFYLLKLEEP-ETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPR 61
+L+ K D+L +L+K +E T +A L+ S R V L+ I + +++S
Sbjct: 3 VLNIKEKDILQFLIKNKERFVTSKELAEYLSCSDRTVRNVLKLIEKTMIIQGVRLISKQG 62
Query: 62 VGILLTEKQKAA---CRLLLDEVTDY--SYVMKSSERLQLSLVSIVVAKDRVTIDRLMQL 116
G + + + A R + DY + V K +RL L ++ + V D L
Sbjct: 63 QGYQIFFENQGAYQEFRQTYELAEDYTKTAVSKGDDRLVFILNKLLFEQVPVLFDDLADE 122
Query: 117 NDVSRNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNG 176
VSR+T+ +D ++R L+ EYNL ++S +G ++ G +++
Sbjct: 123 LYVSRSTLSHDFKKIRVMLS--EYNLSIESRANKGVYVSGEERDKRRFII---------- 170
Query: 177 SSSFIDLFNHKLSQAFGASTYFSKEV-LDYFHHYLFISQRSLGKKINSQDGQFMIQILPF 235
+ F++ K + +F + V L+ F + + K++ F++Q L
Sbjct: 171 -NYFLENQFFKTIHCYVKFNFFDQTVPLEEFARIVLDECQEANLKLSD----FVLQNL-V 224
Query: 236 ILMAYRKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAML 295
+ +A +RL + N D + E ++A+ + ++ E E+ + +
Sbjct: 225 VHIALSVIRLKSGFEIK-NIDCQMTDDAIERKVAQRILSKVREVTNQEFPVQEIDYITLH 283
Query: 296 MLSFRKDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRK 355
+L+ + + ++ + ++ +L + L +F L+ L+TH L R
Sbjct: 284 LLAKSQQCQKNQKNISEEVLKKSLLKTFQNLGLDDMYNFSSDFQLIEGLITHLMTLQVRL 343
Query: 356 RYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQ 415
I NPL + IK Y ++F +T + ++K + ++DD++AY+++H + S+
Sbjct: 344 ESRITLNNPLVDEIKQNYSDIFFMTREILANMDKFLEWSISDDEIAYVSLHFLAAMERSK 403
Query: 416 QSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQ-SVSDLMHVDMVVST 474
+S K ++ + G ++L + + N +E V Y+ + L +D +VS
Sbjct: 404 ES-TKFNILAICATGFGAAQMLRNRLETEFGNR-VEVVDVIGYYELNQEKLKGIDFIVSA 461
Query: 475 SDA--LESRFPMLVVHPVLTDDDI 496
D L + P+ V L D++
Sbjct: 462 VDLSNLYFQIPVFKVSVFLKSDEM 485
>gi|16802343|ref|NP_463828.1| similar to transcriptional
antiterminator (BglG family) [Listeria monocytogenes
EGD-e]
gi|25513856|pir||AB1112 transcription antiterminator (BglG family)
homolog lmo0297 [imported] - Listeria monocytogenes
(strain EGD-e)
gi|16409662|emb|CAD00824.1| lmo0297 [Listeria monocytogenes]
Length = 623
Score = 60.8 bits (146), Expect = 7e-08
Identities = 99/497 (19%), Positives = 202/497 (39%), Gaps = 63/497 (12%)
Query: 4 LDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRVG 63
+ ++ LL L ++ T A++ L S + V + +IN + S +
Sbjct: 3 ISERQRSLLEKLNDSQKTVTAKALSEMLGVSSKTVRNDIMQINQSFSSTI---------- 52
Query: 64 ILLTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNT 123
+ K L+ +E + K++E L L+ ++ +D L +S +T
Sbjct: 53 --IASKAGKGYFLMPNEQLSQMNLTKNNENLHFELLRHIIEQDHTNFYDLADQFFISEST 110
Query: 124 ILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFIDL 183
+ + EL +AEK+ L II+ +LL + +L
Sbjct: 111 LARIIKELNIVIAEKD-----------------ESLCIIRKNNELLTEGGEEEKRRIFNL 153
Query: 184 FNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFM--IQILPFIL-MAY 240
F L+Q + DYF + L + + FM + FIL +A
Sbjct: 154 F---LNQEIENHQLSLDKYADYFDYCNLKQLSELIIAYHKKHEFFMNDFSTISFILHIAV 210
Query: 241 RKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFR 300
R+S + + + L + E+A LA+ LE+ Q+++ E+ +A L S +
Sbjct: 211 LIERIS--MGSYIERTALLEQDKTSLEMAAHLAETLEKELQINIPTQELSYIARLY-SGK 267
Query: 301 KDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIF 360
+ +++Q + + +T L+ +++ +H+ F + + L+ H AL R + +
Sbjct: 268 LTTTSTIDAQVFG---SVVTRLLEAVDQNFHIDFSADEKIATYLVAHISALYKRANHKQY 324
Query: 361 SVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPNK 420
NPLTE +K+K+ ++ ++ + ++K I DD++AY+ +H K
Sbjct: 325 LTNPLTEELKNKFPFIYNVSVYASAFIQKELAITFPDDEIAYIALHFLSASETINHG-KK 383
Query: 421 LKLVIVSDEGIAIQKLLLKQCQR-------------------YLTNSDIEAVFTTEQYQS 461
K+++V+ G Q+L+ Q ++ + + +I + T E
Sbjct: 384 RKILLVTPYGAGSQRLIHNQLKKIPDFSIDLLVSQSIFDIKQFTLDKEIHLILTAEPLNL 443
Query: 462 VSDL--MHVDMVVSTSD 476
+D+ H D++++ SD
Sbjct: 444 TTDIPVYHYDLLLAESD 460
>gi|19746303|ref|NP_607439.1| putative transcriptional
antiterminator [Streptococcus pyogenes MGAS8232]
gi|19748493|gb|AAL97938.1| putative transcriptional antiterminator
[Streptococcus pyogenes MGAS8232]
Length = 664
Score = 60.5 bits (145), Expect = 8e-08
Identities = 112/512 (21%), Positives = 208/512 (39%), Gaps = 34/512 (6%)
Query: 3 ILDKKSYDLLFYLLKLEEPETVMA-IANALNQSRRKVYYHLEKINDALPSDVPQIVSYPR 61
+L KK ++ +L++ +E A +A + S R V +L+++ +LP I+S
Sbjct: 1 MLSKKELAIITFLIRHKEQFVSSATLAEVIGMSDRTVRKYLKELISSLPEHGAHIISKQG 60
Query: 62 VGILLTEKQKAACRLLLDE-------VTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLM 114
G L A + E + D + V +S +R L + L
Sbjct: 61 RGYCLEIDHSMAFDIFWQESVTSKKRLADVTQVEESVDREDYVLHKFFFEDAVQDFEELC 120
Query: 115 QLNDVSRNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYH 174
Q +SR T+ + L ++ + Y L+L+ T HP IQ K D +
Sbjct: 121 QELYISRTTLKHVLAGIKERII--PYQLELEIT---------HPH--IQIRGKEEDIRHF 167
Query: 175 NGSSSFIDLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILP 234
F+ F++ LS G +T+ E +++ + + K+ D +L
Sbjct: 168 IMDYFFVTSFDNTLSTMVG-NTFL--EGINFAEIMIIVLDECRDAKLELSDFVMNNLVLH 224
Query: 235 FILMAYRKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAM 294
LM R P L S + Q EY++A + +EE + + E +A
Sbjct: 225 IALMVQRIRSGCP---LELFSIPIAIRQSDEYQVALRILYRVEEVMGIRFPKEEANYIA- 280
Query: 295 LMLSFRKDRDNHLESQDYDD-MRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLY 353
L L + H + + D+ ++ L + + ++ + + +L + LL H L
Sbjct: 281 LHLKVKHSVGKHWQDDNTDEKLQDHLKACIAKISQLTGMTLETDTNLFQGLLAHMMPLTT 340
Query: 354 RKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRN 413
R I NPLTE IK +Y E+F +T L ++DD+ AY+++HL +
Sbjct: 341 RLENHIQLTNPLTEEIKSQYPEIFTLTKQIFSDLLVCQNNDVSDDEWAYISLHLMAAIER 400
Query: 414 SQQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSD-LMHVDMVV 472
+KL++++V G +L + ++ + V Y+ + L VD+++
Sbjct: 401 YSNR-HKLRVLVVCATGYGSAMMLKNRLEKEFEGR-LRIVDVISYYEITEERLKTVDLII 458
Query: 473 STSDALESRF--PMLVVHPVLTDDDIIRLIRF 502
S+ F P++ V L++ DI + +F
Sbjct: 459 SSISLANLMFLIPVITVSVFLSNQDIETIRQF 490
>gi|3025455|gb|AAC12849.1| MtlR [Clostridium acetobutylicum]
Length = 684
Score = 60.5 bits (145), Expect = 9e-08
Identities = 104/520 (20%), Positives = 228/520 (43%), Gaps = 62/520 (11%)
Query: 11 LLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRVGILLTEKQ 70
+L L+K ++ V + L S R + + IN L D I Y + ++++ +
Sbjct: 11 ILSELIK-KKVSNVDVLHKELAVSIRTILREVASINKVLKKDKITIYDYENMNLVISGDR 69
Query: 71 KAACRLLLDEVTDYSYVMK--SSERLQLSLVSIVVAKDRVTIDRLMQLN-DVSRNTILND 127
+ L+ +Y ++ + ++ Q+++ +++++ +V +I D
Sbjct: 70 DSIKN--LENSINYIPILWLCNKDQRQIAITCKLLSEEEYLKASYFSYKFNVVMGSISQD 127
Query: 128 LNELRSELAEKEYNLQLQSTKCRGYFLDGHPL----SIIQYLYK------LLDDIYHNGS 177
L+ +++ L K NL L + G +DG + ++ ++ LL +Y + +
Sbjct: 128 LDNIQTLLVNK--NLHLIRKRTYGIMIDGSEWNKRNAFVELFFRFKPFEYLLSFLYGHKT 185
Query: 178 SS-----FIDLFNHK----LSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQF 228
F D+F+ K + + F + S V D + LF+ KK S+
Sbjct: 186 DETVEAFFKDIFDAKTIDIVKEIFKKLHFGSTNVNDIKYFSLFLLTLLAIKKTESK---- 241
Query: 229 MIQILPFILMAYRKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIE 288
+ + L +V+ + S Y + L ++L EN + L E E
Sbjct: 242 ------------KNINLPNKVKQDMKSSII-------YNTLRSLQEKLMEN-NIILPEDE 281
Query: 289 VGLVAMLMLSFRKDRD---NHLESQ-DYDDMRATLTSFLKELEERYHLHFVHKKDLLRQL 344
+ + + + ++ D N++E+ +Y ++ L + + ++ ++ K L+ L
Sbjct: 282 LSYLCLHLNDYKYYNDAEENNIEADINYTEISNELVT---GVSKKIGINITKDKKLVEDL 338
Query: 345 LTHCKALLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLT 404
H K + G+ +NPL IK+ Y +LFAI ++ KL+ + IK+ ++++ Y+T
Sbjct: 339 SNHLKQTFHMLSVGLDIINPLLNEIKEHYSQLFAIINNECKLIFSRYNIKILEEEIGYIT 398
Query: 405 IHLGGELRNSQQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSD 464
+H+ ++ Q K+ L+IV G++ +L + + SDIE++ + + +
Sbjct: 399 MHIDVAIQRQQIFSKKINLLIVCPNGMSSGNILGNKVKSLF--SDIESITISSIHDAYEK 456
Query: 465 LMH--VDMVVSTSDALESRFPMLVVHPVLTDDDIIRLIRF 502
+++ D+++ST ++VV P +T++DI + F
Sbjct: 457 MVNNEYDLILSTVPISLQISNVIVVSPFMTNEDIEEVRNF 496
>gi|32450784|gb|AAO26324.1| putative transcriptional regulator
[Lactococcus raffinolactis]
Length = 608
Score = 60.1 bits (144), Expect = 9e-08
Identities = 95/424 (22%), Positives = 188/424 (43%), Gaps = 42/424 (9%)
Query: 88 MKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILNDLNELRSELAEKEYNLQLQST 147
+ ++R L+++ I + +++ L VSR TIL D+ +++ +E ++ L+ +
Sbjct: 8 LTENDRQALAILMISAELEEISVYHLQDALFVSRGTILADIKKIQK--YAQENDVVLKYS 65
Query: 148 KCRGYFLDGHPLSIIQYLYK-LLDDIYHNGSSSFIDLFNHKLSQAFGASTYFSKEVLDYF 206
+ GY G I Q + K +L +Y + + ++ S F E+ +F
Sbjct: 66 RQSGYRFYGDERLIRQIIQKSILALLYQPATKELMVNILNQFSDDFHLRVM--TEIRQFF 123
Query: 207 --HHYLFISQRSLGKKINSQDGQFMIQILPFILMAYRKMRLSPEVQTSLNSDFSLVWQRK 264
H + R+ + I L F++ +R S +S+ S++
Sbjct: 124 KNHRLTVVPSRT----------EETIYFLAFVI-----IRSSTHSIVLTDSEISIL---- 164
Query: 265 EYEIAKELADELEENFQLSLD-EIEVGLVAMLMLSFRKDRDNHLESQDYDDMRATLTSFL 323
+ I K+ EL ++F ++ E E AM+++ + + E++ D +
Sbjct: 165 NHLIIKKKVVELVQHFPGVVNQEAETNYWAMVLMGMIQAKVREYETEFLYDCSYEIC--- 221
Query: 324 KELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFSV-NPLTEHIKDKYEELFAITSS 382
+++E + F +++ + H +R G F++ N L E I+ +Y LF IT
Sbjct: 222 RKVEHSTGIEFKAFNNVVDHIYAHLVPAYFRI-LGKFTIQNVLIEQIQKQYNHLFQITHY 280
Query: 383 SVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSP--NKLKLVIVSDEGIAIQKLLLKQ 440
S+ LE+ +L D ++ Y TI GGE+ N + P + + ++V G++ ++ +
Sbjct: 281 SLTPLEELLGERLPDSEIGYFTILFGGEIANMAERPEDKRYRALVVCPSGMSSSLIMRSE 340
Query: 441 CQRYLTNSD-IEA--VFTTEQYQSVSDLMHVDMVVSTSDALESRFPMLVVHPVLTDDDII 497
D IEA F EQ L D++ S+ D LE++ P+ V+ P+L+ D +
Sbjct: 341 LATLFPMLDFIEARSFFELEQMP----LDDYDLIFSSVD-LETQKPLYVMPPILSTTDKV 395
Query: 498 RLIR 501
L+R
Sbjct: 396 ELLR 399
>gi|28379854|ref|NP_786746.1| multidomain protein [Lactobacillus
plantarum WCFS1]
gi|28272695|emb|CAD65624.1| multidomain protein [Lactobacillus
plantarum WCFS1]
Length = 683
Score = 60.1 bits (144), Expect = 1e-07
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 5/166 (3%)
Query: 313 DDMRATLTSF-LKELEERYHLHFVHK--KDLLRQLLTHCKALLYRKRYGIFSVNPLTEHI 369
DD+ L F ++ + HL H K + L H + YR +Y + P + I
Sbjct: 282 DDLIQKLKPFSVRMISSFNHLSGAHVSIKSISDSLTVHLLSTYYRAQYNMPFEYPDLKSI 341
Query: 370 KDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQS-PNKLKLVIVSD 428
+ Y F IT V E+ L+DD++A + I+ GG +R + S P + ++++V
Sbjct: 342 QQHYHHTFEITRKVVVPFEQYIHHTLSDDEIALIAIYFGGAIREQKTSTPTQNEVLVVCS 401
Query: 429 EGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVST 474
GI +LLL+Q + + QY++ SDL +V +V+ST
Sbjct: 402 SGIGTSRLLLQQLESRYRGIHFSSPMNVLQYEN-SDLSNVQLVIST 446
>gi|15675268|ref|NP_269442.1| putative transcriptional
antiterminator (BglG family) [Streptococcus pyogenes]
gi|13622442|gb|AAK34163.1| putative transcriptional antiterminator
(BglG family) [Streptococcus pyogenes M1 GAS]
Length = 664
Score = 60.1 bits (144), Expect = 1e-07
Identities = 109/514 (21%), Positives = 208/514 (40%), Gaps = 38/514 (7%)
Query: 3 ILDKKSYDLLFYLLKLEEPETVMA-IANALNQSRRKVYYHLEKINDALPSDVPQIVSYPR 61
+L KK ++ +L+ +E A +A + S R V +L+++ +LP I+S
Sbjct: 1 MLSKKELAIITFLIHHKEQFVSSATLAEVIGMSDRTVRKYLKELISSLPEHGAHIISKQG 60
Query: 62 VGILLTEKQKAACRLLLDE-------VTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLM 114
G L A + E + D + V +S +R L + L
Sbjct: 61 RGYCLEIDHSMAFDIFWQESVTSKKRLADVTQVEESVDREDYVLHKFFFEDAVQDFEELC 120
Query: 115 QLNDVSRNTILNDLNELRSELAEKEYNLQL--QSTKCRGYFLDGHPLSIIQYLYKLLDDI 172
Q +SR T+ + L ++ + + L++ Q + RG D I+ Y
Sbjct: 121 QELYISRTTLKHVLAGIKERIIPYQLELEITHQHIQIRGKEEDIRHF-IMDYF------- 172
Query: 173 YHNGSSSFIDLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQI 232
F+ F++ LS G +T+ E +++ + + K+ D +
Sbjct: 173 -------FVTSFDNTLSTMVG-NTFL--EGINFAEIMIIVLDECRDAKLKLSDFVMNNLV 222
Query: 233 LPFILMAYRKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLV 292
L LM R P L S + Q EY++A + +EE + + E +
Sbjct: 223 LHIALMVQRIRSGCP---LELFSIPIAIRQSDEYQVALRILYRVEEVMGIRFPKEEANYI 279
Query: 293 AMLMLSFRKDRDNHLESQDYDD-MRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKAL 351
A L L + H + + D+ ++ L + + ++ + + +L + LL H L
Sbjct: 280 A-LHLKVKHSVGKHWQDDNTDEKLQDHLKACIAKISQLTGMTLETDTNLFQGLLAHMMPL 338
Query: 352 LYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGEL 411
R I NPLTE IK +Y E+F +T + L + ++DD+ AY+++HL +
Sbjct: 339 TIRLENHIQLTNPLTEEIKSQYPEIFTLTKQTFSDLLVCQKNDVSDDEWAYISLHLMAAI 398
Query: 412 RNSQQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSD-LMHVDM 470
+KL++++V G +L + ++ + V Y+ + L VD+
Sbjct: 399 ERYSNR-HKLRVLVVCATGYGSAMMLKNRLEKEFEGR-LRIVDVISYYEITEERLKTVDL 456
Query: 471 VVSTSDALESRF--PMLVVHPVLTDDDIIRLIRF 502
++S+ F P++ V L++ DI + +F
Sbjct: 457 IISSISLANLMFLTPVITVSVFLSNQDIETIRQF 490
>gi|15893450|ref|NP_346799.1| Putative regulator of the PTS system
for mannitol (gene MltR) [Clostridium acetobutylicum]
gi|25501275|pir||H96918 probable regulator of the PTS system for
mannitol (gene MltR) [imported] - Clostridium
acetobutylicum
gi|15022984|gb|AAK78139.1|AE007528_3 Putative regulator of the PTS
system for mannitol (gene MltR) [Clostridium
acetobutylicum]
Length = 684
Score = 60.1 bits (144), Expect = 1e-07
Identities = 104/520 (20%), Positives = 228/520 (43%), Gaps = 62/520 (11%)
Query: 11 LLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRVGILLTEKQ 70
+L L+K ++ V + L S R + + IN L D I Y + ++++ +
Sbjct: 11 ILSELIK-KKVSNVDVLHKELAVSIRTILREVASINKVLKKDKITIYDYENMNLVISGDR 69
Query: 71 KAACRLLLDEVTDYSYVMK--SSERLQLSLVSIVVAKDRVTIDRLMQLN-DVSRNTILND 127
+ L+ +Y ++ + ++ Q+++ +++++ +V +I D
Sbjct: 70 DSIKN--LENSINYIPILWLCNKDQRQIAITCKLLSEEEYLKASYFSYKFNVVMGSISQD 127
Query: 128 LNELRSELAEKEYNLQLQSTKCRGYFLDGHPL----SIIQYLYK------LLDDIYHNGS 177
L+ +++ L K NL L + G +DG + ++ ++ LL +Y + +
Sbjct: 128 LDNIQTLLVNK--NLHLIRKRTYGIMIDGSEWNKRNAFVELFFRFKPFEYLLSFLYGHKT 185
Query: 178 SS-----FIDLFNHK----LSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQF 228
F D+F+ K + + F + S V D + LF+ KK S+
Sbjct: 186 DETVEAFFKDIFDAKTIDIVKEIFKKLHFGSTNVNDIKYFSLFLLTLLAIKKTESK---- 241
Query: 229 MIQILPFILMAYRKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIE 288
+ + L +V+ + S Y + L ++L EN + L E E
Sbjct: 242 ------------KNINLPNKVKQDMKSSII-------YNTLRSLQEKLMEN-NIILPEDE 281
Query: 289 VGLVAMLMLSFRKDRD---NHLESQ-DYDDMRATLTSFLKELEERYHLHFVHKKDLLRQL 344
+ + + + ++ D N++E+ +Y ++ L + + ++ ++ K L+ L
Sbjct: 282 LSYLCLHLNDYKYYNDAEENNIEADINYTEISNELVT---GVSKKIGINITKDKKLVEDL 338
Query: 345 LTHCKALLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLT 404
H K + G+ +NPL IK+ Y +LFAI ++ KL+ + IK+ ++++ Y+T
Sbjct: 339 SNHLKQTFHMLSVGLDIINPLLNEIKEHYSQLFAIINNECKLIFSRYNIKILEEEIGYIT 398
Query: 405 IHLGGELRNSQQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSD 464
+H+ ++ Q K+ L+IV G++ +L + + SDIE++ + + +
Sbjct: 399 MHIDVAIQRQQIFSKKINLLIVCPNGMSSGNILGNKVKSLF--SDIESITISSIHDAYEK 456
Query: 465 LMH--VDMVVSTSDALESRFPMLVVHPVLTDDDIIRLIRF 502
+++ D+++ST ++VV P +T++DI + F
Sbjct: 457 MVNNEYDLILSTVPISLQISNVIVVSPFMTNEDIEEVRNF 496
>gi|24379980|ref|NP_721935.1| putative transcriptional regulator;
possible antiterminator [Streptococcus mutans UA159]
gi|24377966|gb|AAN59241.1|AE014991_7 putative transcriptional
regulator; possible antiterminator [Streptococcus mutans
UA159]
Length = 663
Score = 59.7 bits (143), Expect = 1e-07
Identities = 105/511 (20%), Positives = 217/511 (41%), Gaps = 40/511 (7%)
Query: 3 ILDKKSYDLLFYLLKLE-EPETVMAIANALNQSRRKVYYHLEKINDALPS-DVPQIVSYP 60
+L KK ++ L+K E + T A+A LN S R + + + +++ L I+S
Sbjct: 1 MLHKKETQIIQLLIKDEGQFITSKALAEQLNCSDRTIRTYCKLLSEKLKDYSGVDIISKQ 60
Query: 61 RVGILLTEKQKAACRLLL------DEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLM 114
G K + L D + Y V+ ++R L ++ ++ + D L
Sbjct: 61 GQGYQFNIKDREKYLHFLEDNHINDHLLTYKKVIDINDRYNYLLNKLLFEQNEIYFDDLA 120
Query: 115 QLNDVSRNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYH 174
VSR+T+ ND ++R Y+L+++S +G F+ G ++ ++D H
Sbjct: 121 DELFVSRSTLSNDFKKIRKRFV--PYHLKIESKANKGVFVTGTERDKRRF---IMDYFIH 175
Query: 175 NGSSSFIDLFNHKLSQAFGASTYFSKEVLDYFHHY--LFISQRSLGKKINSQDGQFMIQI 232
+G FI+ TY E+L+ + L I ++ + + F+IQ
Sbjct: 176 SG---FINTMQ----------TYIDNELLNQKISFEELTIIVLDECREGHLKLSDFVIQN 222
Query: 233 LPFILMAYRKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLV 292
L I +A R++ + SD + + E E+A+++ + Q+ EV +
Sbjct: 223 L-VIHIALAIRRITEGFHIAKISDKTELSNMPEREVARKILKRVTLATQIEFPIEEVDYI 281
Query: 293 AMLMLSFRKDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALL 352
+ ++S + +++ + +++ +R L +++LE F + LL H +L
Sbjct: 282 TLHLISKSYNNAHYISNDNFEQIRKELVMAIEQLEPCLKNDF----QFIEGLLAHLSTML 337
Query: 353 YRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELR 412
R I NPLT I+ Y+ + + + + + D++AY+ +H
Sbjct: 338 IRLEGQINLENPLTAEIQKNYQVKYQLAQKLMHSMPIFSPFSFSADEIAYIALHFMAATE 397
Query: 413 NSQQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSD--LMHVDM 470
++ NK ++++ G ++L + + L N + + Y ++D L +D
Sbjct: 398 RLKEK-NKHNILVICATGYGSAQMLKNRIENELGN--LVHITDVVGYYDINDDKLKDIDF 454
Query: 471 VVSTSDALESRF--PMLVVHPVLTDDDIIRL 499
++S+ D F P+ V LT++++ R+
Sbjct: 455 IISSIDLSNLIFNIPVFTVSVFLTEEELSRI 485
>gi|21910541|ref|NP_664809.1| putative transcriptional
antiterminator [Streptococcus pyogenes MGAS315]
gi|28895766|ref|NP_802116.1| putative transcriptional
antiterminator (BglG family) [Streptococcus pyogenes
SSI-1]
gi|21904741|gb|AAM79612.1| putative transcriptional antiterminator
[Streptococcus pyogenes MGAS315]
gi|28811015|dbj|BAC63949.1| putative transcriptional antiterminator
(BglG family) [Streptococcus pyogenes SSI-1]
Length = 624
Score = 59.3 bits (142), Expect = 2e-07
Identities = 108/512 (21%), Positives = 208/512 (40%), Gaps = 34/512 (6%)
Query: 3 ILDKKSYDLLFYLLKLEEPETVMA-IANALNQSRRKVYYHLEKINDALPSDVPQIVSYPR 61
+L KK ++ +L+ +E A +A + S R V +L+++ +LP I+S
Sbjct: 1 MLSKKELAIITFLIHHKEQFVSSATLAEVIGMSDRTVRKYLKELISSLPEHGAHIISKQG 60
Query: 62 VGILLTEKQKAACRLLLDE-------VTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLM 114
G L A + E + D + V +S +R L + L
Sbjct: 61 RGYCLEIDHSMAFDIFWQESVTSKKRLADVTQVEESVDREDYVLHKFFFEDAVQDFEELC 120
Query: 115 QLNDVSRNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYH 174
Q +SR T+ + L ++ + Y L+L+ T + + G I ++
Sbjct: 121 QELYISRTTLKHVLAGIKERII--PYQLELEITH-QHIQIKGKEEDIRHFIMDYF----- 172
Query: 175 NGSSSFIDLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILP 234
F+ F++ LS G +T+ E +++ + + K+ D +L
Sbjct: 173 -----FVTSFDNTLSTMVG-NTFL--EGINFAEIMIIVLDECRDAKLKLSDFVMNNLVLH 224
Query: 235 FILMAYRKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAM 294
LM R P L S + Q EY++A + +EE + + E +A
Sbjct: 225 IALMVQRIRSGCP---LELFSIPIAIRQSDEYQVALRILYRVEEVMGIRFPKEEANYIA- 280
Query: 295 LMLSFRKDRDNHLESQDYDD-MRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLY 353
L L + H + + D+ ++ L + + ++ + + +L + LL H L
Sbjct: 281 LHLKVKHSVGKHWQDDNTDEKLQDHLKACIAKISQLTDMTLETDTNLFQGLLAHMMPLTT 340
Query: 354 RKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRN 413
R I NPLTE IK +Y E+F +T + L + ++DD+ AY+++HL +
Sbjct: 341 RLENHIQLTNPLTEEIKSQYPEIFTLTKQTFSDLLVCQKNDVSDDEWAYISLHLMAAIER 400
Query: 414 SQQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSD-LMHVDMVV 472
+KL++++V G +L + ++ + V Y+ + L VD+++
Sbjct: 401 YSNR-HKLRVLVVCATGYGSAMMLKNRLEKEFEGR-LRIVDVISYYEITEERLKTVDLII 458
Query: 473 STSDALESRF--PMLVVHPVLTDDDIIRLIRF 502
S+ F P++ V L++ DI + +F
Sbjct: 459 SSISLANLMFLTPVITVSVFLSNQDIETIRQF 490
>gi|15900239|ref|NP_344843.1| transcriptional regulator, putative
[Streptococcus pneumoniae TIGR4]
gi|25388296|pir||B95036 transcription regulator, probable
[imported] - Streptococcus pneumoniae (strain TIGR4)
gi|14971779|gb|AAK74483.1| transcriptional regulator, putative
[Streptococcus pneumoniae TIGR4]
Length = 493
Score = 58.5 bits (140), Expect = 3e-07
Identities = 105/504 (20%), Positives = 216/504 (42%), Gaps = 31/504 (6%)
Query: 3 ILDKKSYDLLFYLLKLEEP-ETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPR 61
+L+ K D+L +L+K +E T +A L+ S R V L+ I + +++S
Sbjct: 3 VLNIKEKDILQFLIKNKERFVTSKELAEYLSCSDRTVRNVLKLIEKTMIIQGVRLISKQG 62
Query: 62 VGILLTEKQKAACRLL-----LDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQL 116
G + + + A + L+E + V K +RL L ++ + V D L
Sbjct: 63 QGYQIFFENQGAYQEFRQTYELEEDYTKTAVSKGDDRLVFILNKLLFEQVPVLFDDLADE 122
Query: 117 NDVSRNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNG 176
VSR+T+ +D ++R L+ EYNL ++S +G ++ G +++
Sbjct: 123 LYVSRSTLSHDFRKIRVMLS--EYNLSIESRANKGVYVSGEERDKRRFII---------- 170
Query: 177 SSSFIDLFNHKLSQAFGASTYFSKEV-LDYFHHYLFISQRSLGKKINSQDGQFMIQILPF 235
+ F++ K + +F + V L+ F + + K++ F++Q L
Sbjct: 171 -NYFLENQFFKTIHCYVKFNFFDQTVPLEEFARIVLDECQEANLKLSD----FVLQNL-V 224
Query: 236 ILMAYRKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAML 295
+ +A +RL + N D + E ++A+ + ++ E E+ + +
Sbjct: 225 VHIALSVIRLKSGFEIK-NIDCQMTDDAIERKVAQRILSKVREVTNQEFPVQEIDYITLH 283
Query: 296 MLSFRKDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRK 355
+L+ + + ++ + ++ +L + L +F L+ L+TH L R
Sbjct: 284 LLAKSQQCQKNQKNISEEVLKKSLFKTFQNLGLDDMYNFSSDFQLIEGLITHLMTLQVRL 343
Query: 356 RYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQ 415
I NPL + IK Y ++F +T + ++K + ++DD+VAY+++H + S+
Sbjct: 344 ESRITLNNPLVDEIKQNYSDIFFMTREILANMDKFLEWTISDDEVAYVSLHFLAAMERSK 403
Query: 416 QSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQ-SVSDLMHVDMVVST 474
+S K ++ + G ++L + + +E V Y+ + L +D +VS
Sbjct: 404 ES-TKFNILAICATGFGAAQMLRNRLETEF-GKRVEVVDVIGYYELNQEKLKGIDFIVSA 461
Query: 475 SDA--LESRFPMLVVHPVLTDDDI 496
D L + P+ V L D++
Sbjct: 462 IDLSNLYFQIPVFKVSVFLKSDEM 485
>gi|23100219|ref|NP_693686.1| transcriptional antiterminator of
lichenan operon [Oceanobacillus iheyensis HTE831]
gi|22778451|dbj|BAC14720.1| transcriptional antiterminator of
lichenan operon [Oceanobacillus iheyensis HTE831]
Length = 648
Score = 58.2 bits (139), Expect = 4e-07
Identities = 114/569 (20%), Positives = 233/569 (40%), Gaps = 63/569 (11%)
Query: 4 LDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRVG 63
+D + +L ++ + P T IAN + R ++K+N + I S G
Sbjct: 1 MDTRLRVMLKEFIQAKAPLTSTFIANINQVTSRTTRDDIKKLNQHIQLHGAVIQSIKGKG 60
Query: 64 ILLT-EKQKAACRLLLDEVTDYSYVMKS----SERLQLSLVSIVVAKDRVTIDRLMQLND 118
L+ + + R L E + K+ +R++ + ++ D + +++L
Sbjct: 61 YQLSIQNEDTFHRFLTMEWNEDMDSRKTPNTPEQRVKYIVRRLLFTMDYIKLEQLADEMY 120
Query: 119 VSRNTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSS 178
+S++TI ND+ +R +L E ++ ++ + + + +
Sbjct: 121 ISKSTIQNDMKLVRQQLNPFELDIHVKPSHGIKIIGEEIKIRFCM-------------AE 167
Query: 179 SFIDLFNHKLSQAFGASTYFSKEVLDYFHHYLFIS----QRSLGKKINSQDGQFMIQILP 234
F+D NH + D H F++ Q S+ K I Q L
Sbjct: 168 FFVDRENHSHA--------------DVKTHCEFVTLPDQQMSMIKNIIIQQLDSHQMTLS 213
Query: 235 -------FILMAYRKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEEN----FQLS 283
FI +A +R+ N+ Q + A +A+++ E+ LS
Sbjct: 214 DIAIHNLFIHIAIAVLRIRDGHPIDFNAAHREEMQDMKDTKAYFVAEKIVEDTEKQLHLS 273
Query: 284 LDEIEVGLVAMLMLSFRKDRDNHLESQDYD-----DMRATLTSFLKELEERYHLHFVHKK 338
+ E VA+ +L + +++S D + + + L+++EE HL
Sbjct: 274 FPKTETTYVALHLLGTKMVGSTNIDSTDIESILDPSIYKLIMLSLEKIEEEMHLGISQDT 333
Query: 339 DLLRQLLTHCKALLYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDD 398
+L+ L H K + R +YG+ NP+ HIK Y F + ++E+ I + ++
Sbjct: 334 ELMISLGMHLKPAMNRYKYGMNIRNPMLTHIKKNYPLAFQAAVYAGVVIEEKTDITIDEN 393
Query: 399 DVAYLTIHLGGELRNSQQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQ 458
++ YL +H+G + ++ + ++V G+ +L+ + + +E V TTE
Sbjct: 394 EIGYLALHIGAAMERNKLRKGPKRCLVVCASGMGTAQLIYYKLKSKF-EGQMEVVGTTEY 452
Query: 459 YQSVS-DLMHVDMVVSTSDALESR-FPMLVVHPVLTDDDIIRLIRF--SKKGNCAN---- 510
Y+ L +D+++S+ E P++ V+ ++ ++D+ + F KK N +
Sbjct: 453 YRLRDYPLDDIDLIISSIPIKEDLCIPVIEVNAIIEEEDLQHIQSFISGKKTNLLSQYLH 512
Query: 511 -SNQFTNELEKTIAQYVKEDSERYVLKSK 538
SN F N LE + Q V E +V++++
Sbjct: 513 ESNIFLN-LEASSKQDVLEHMTAHVIENE 540
>gi|22993404|ref|ZP_00038004.1| hypothetical protein [Enterococcus
faecium]
Length = 675
Score = 55.1 bits (131), Expect = 3e-06
Identities = 79/427 (18%), Positives = 177/427 (40%), Gaps = 32/427 (7%)
Query: 80 EVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILNDLNELRSELAEKE 139
++T + V ER L + + V++ VS+ T+L+D+ ++R+EL ++
Sbjct: 67 DITRFEAVYTEQERRDLLYLMVYSTATSVSVFHFQDFLQVSKGTVLSDIKKIRNELEVED 126
Query: 140 YNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFIDLFNHKLSQAFGASTYFS 199
QL T+ G+ L G + I + + L+ FG + +
Sbjct: 127 --CQLSYTRKTGFRLLGS------------EAILRREAKNRTARLMQSLAGRFGLTYLTA 172
Query: 200 KEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFI--LMAYRKMRLSPEVQTSLNSDF 257
+DY+ + L K I+ D +F + + ++ +R+ + L D
Sbjct: 173 TLSIDYYAKV----RDLLDKTISLSDLRFAPNRMDELAYYLSLTTIRIG-KTSMELVKDA 227
Query: 258 SLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFRKDRDNHLESQDYDDMRA 317
L+ +I++++ L E + + L + ++ D +
Sbjct: 228 ELLASLAVTDISRQVLT------GLGYSEHQNSEIIFFSLCLASIVEGDVQEPALDFLLE 281
Query: 318 TLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIFSVNPLTEHIKDKYEELF 377
+ + +E + F ++LL + H +R Y + N + + IK +Y ++
Sbjct: 282 CSSEVIHRMEFLMAVEFASFRELLMNVFYHLVPAYFRISYSFYLPNVMIDQIKHQYASIY 341
Query: 378 AITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELR--NSQQSPNKLKLVIVSDEGIAIQK 435
+T ++ LE+ + ++++ + TI GGE+R ++++ K++ VIV GI+
Sbjct: 342 EMTRKALLPLERRIGKSIPEEEIGFFTILFGGEIRKADAEERNRKIRAVIVCPSGISSSL 401
Query: 436 LLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVVSTS--DALESRFPMLVVHPVLTD 493
+L + Q+ + ++ V + + D++ ST + + + V+HP++TD
Sbjct: 402 ILKSELQQLFPMIFFTETNSADRLHEVDETSY-DIIFSTVPLTLTDKKKSLYVLHPIMTD 460
Query: 494 DDIIRLI 500
+ +LI
Sbjct: 461 LEKNQLI 467
>gi|29375043|ref|NP_814196.1| transcriptional regulator, putative
[Enterococcus faecalis V583]
gi|29342502|gb|AAO80267.1| transcriptional regulator, putative
[Enterococcus faecalis V583]
Length = 677
Score = 54.7 bits (130), Expect = 4e-06
Identities = 107/507 (21%), Positives = 207/507 (40%), Gaps = 50/507 (9%)
Query: 11 LLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRVGILLTEKQ 70
LL L+ P +V + N L SRR VY LE + +L S + R + +
Sbjct: 10 LLTELVNSPTPVSVNRMMNLLKVSRRTVYRELENLETSLASMGATLEKVARGRFSIQADE 69
Query: 71 KAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNTILNDLNE 130
A + + + + + + R L++++ K+ V++ ++ +S T D+ +
Sbjct: 70 AAMTEIQAAILGEETQELSTLARQHAILLTLLQTKEPVSMHYFLETYCISNTTFYADIKQ 129
Query: 131 LRSELAEKEYNLQLQSTKCRGYFLDGH------------PLSIIQYLYKLLDDIYHNGSS 178
L + +A + L + +GY + G + I +Y + ++ N
Sbjct: 130 LETRIAR----IPLTIARNQGYEVTGSEKYRRLLMANILSMEINEYQFFHFTELTTN--D 183
Query: 179 SFIDLFNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFIL- 237
F F H AF A EV F +S R L Q +I +L +
Sbjct: 184 HFFFQFIHAEHLAF-AQKIVQPEVETLFPA---LSDRKL---------QHLILMLTIAMD 230
Query: 238 MAYRKMRLSPEVQT-SLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLM 296
L+ E T +N F +R + ++A E ++ + +S E+ A L+
Sbjct: 231 RVTAGFYLADETYTGQMNKAFLNCSKR----LFSKVAAETKQLYAVS----EIVFFASLL 282
Query: 297 LSFRKDRDNHLESQDYDDMRA-TLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRK 355
F D + +D A + ++ + + ++F +L + LLTH + R
Sbjct: 283 SDFSNSFDEDFFDEHFDTQLAYEVKQLIEAVSQETEVNFFEDTNLYKMLLTHLSGVFSRA 342
Query: 356 RYGIFSV-NPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNS 414
+ NP+ E I ++Y+E+ A ++ + Q L+++++AY+ +H L
Sbjct: 343 VLQEEDLTNPILERIMNQYQEIAAALRQALPQIFP--QKNLSEEEIAYMVLHFANSL--- 397
Query: 415 QQSPNKLKLVIV--SDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMVV 472
++SP +++ I S G+A +L + +RY + F V+ + D+V+
Sbjct: 398 ERSPKIMEVDIAGFSPSGLASTSMLEMRLRRYFPFINQIHFFRIADLGKVNVEENYDLVI 457
Query: 473 STSDALESRFPMLVVHPVLTDDDIIRL 499
STS ++ P+L DD+I +L
Sbjct: 458 STSLLPGYNGKYKLISPLLLDDEIRQL 484
>gi|26553957|ref|NP_757891.1| putative transcription antiterminator
BglG family [Mycoplasma penetrans]
gi|26453965|dbj|BAC44295.1| putative transcription antiterminator
BglG family [Mycoplasma penetrans]
Length = 493
Score = 53.9 bits (128), Expect = 7e-06
Identities = 107/500 (21%), Positives = 200/500 (39%), Gaps = 44/500 (8%)
Query: 5 DKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYP-RVG 63
+K DL+ L+K E ++ ++ ALN +R +Y+++++IND L I+ G
Sbjct: 3 NKNKVDLMKLLIK-NEITSIEEMSKALNLKKRSIYFYIKEINDLLKKYKLNIIKNKWNEG 61
Query: 64 ILLTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNT 123
++ +L+ E Y+ ERL +VV + T+ VS+NT
Sbjct: 62 FTFEGDFESIEKLIEKEF----YLFSHEERLGYICFDVVVNNAKKTMQEYADTFGVSKNT 117
Query: 124 ILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFIDL 183
I D+ + ++ +Y L+ K + + G +L ++D D
Sbjct: 118 IFLDVQKGPKMMS--KYKLRFYFDKEKNICITGPETQKRCFLIHYINDFVLANE----DF 171
Query: 184 FNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFMIQILPFILMAYR-K 242
HKL F S E+ D + R IN + +F+I L + + YR
Sbjct: 172 IVHKL---FKVKEIRSSEITDVVRD-IVDKFRESSLYINEKYFKFLIAYLSILKIYYRTN 227
Query: 243 MRLSPEVQTSL--NSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFR 300
+ S E+ S+ N S W E +L + F D I +L+++
Sbjct: 228 TKASIELSKSIIDNIKNSAYW---------ESCSDLFKYFYGDQDLIHEKCYLVLLMTSG 278
Query: 301 KDRDNHLESQDY---------DDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKAL 351
DN S+ + + +FLK ++ + + +K L ++ H
Sbjct: 279 SINDNGKFSETVLASEIKNHSAGLSEAVDTFLKNIKANNSIQYNQEKKLKANIVDHILRS 338
Query: 352 LYRKRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGEL 411
R +Y + L IKD+Y+ +F ++ ++E +K+ DD++ ++++ +L
Sbjct: 339 YLRIKYFLMGSEYL--RIKDEYKFIFNFVKENISVIEDFLGVKIFDDEIGLISLYFISDL 396
Query: 412 RNSQQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVSDLMHVDMV 471
+ S K++ ++ I+ L+ KQ N DI+ + + D D+V
Sbjct: 397 FSDNSS--KIRTAVILTPHHNIESLVEKQLLSTFANLDIDNITNLNDFYKNED--KYDLV 452
Query: 472 VSTSDALESRFPMLVVHPVL 491
+S D L F L + VL
Sbjct: 453 LSAID-LPKNFNYLRIGKVL 471
>gi|16799402|ref|NP_469670.1| similar to transcriptional
antiterminator (BglG family) [Listeria innocua]
gi|25516251|pir||AF1473 transcription antiterminator (BglG family)
homolog lin0325 [imported] - Listeria innocua (strain
Clip11262)
gi|16412754|emb|CAC95558.1| lin0325 [Listeria innocua]
Length = 623
Score = 51.2 bits (121), Expect = 5e-05
Identities = 93/443 (20%), Positives = 180/443 (39%), Gaps = 42/443 (9%)
Query: 4 LDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRVG 63
+ ++ LL L + T A++ L S + V + +IN + S + I S G
Sbjct: 3 ISERQRSLLEKLNDSQRTVTAKALSEMLGVSSKTVRNDIIQINQSFSSTI--IASKAGKG 60
Query: 64 ILLTEKQKAACRLLLDEVTDYSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSRNT 123
LT ++ + L K++E L L+ ++ +D L +S +T
Sbjct: 61 YFLTPNEQLSQMNL----------SKNNENLHFELLRHIIEQDHTNFYDLADQFFISEST 110
Query: 124 ILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFIDL 183
+ + EL + +AEK+ L II+ +L I G +
Sbjct: 111 LARIIKELNAVIAEKD-----------------ESLCIIRKNNEL---ITEGGEEEKRCI 150
Query: 184 FNHKLSQAFGASTYFSKEVLDYFHHYLFISQRSLGKKINSQDGQFM--IQILPFIL-MAY 240
FN L+Q + DYF + L + ++ FM + FIL +A
Sbjct: 151 FNLFLNQEIENHQLSLDKYADYFDYCNLKQLSELIIAYHKKNEFFMNDFSTISFILHIAV 210
Query: 241 RKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLSFR 300
R+S + + + L + E+A+ L + LEE + + E+ +A L
Sbjct: 211 LIERIS--MGSYIERTALLEQDKTSLEMAEHLTETLEEELHIDIPTQELSYIARLY---- 264
Query: 301 KDRDNHLESQDYDDMRATLTSFLKELEERYHLHFVHKKDLLRQLLTHCKALLYRKRYGIF 360
+ + D + +T L+ +++ +H+ F + + L+ H AL R + +
Sbjct: 265 SGKLATTSTIDAKVFGSVVTRLLEAVDQNFHIDFSADEKIATYLVAHISALYKRANHKQY 324
Query: 361 SVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNSQQSPNK 420
NPLTE +K+K+ ++ ++ + ++K I DD++AY+ +H K
Sbjct: 325 LTNPLTEELKNKFPFIYNVSVYASAFIQKELAITFPDDEIAYIALHFLSASETINHG-KK 383
Query: 421 LKLVIVSDEGIAIQKLLLKQCQR 443
K+++V+ G Q+L+ Q ++
Sbjct: 384 RKILLVTPYGAGSQRLIHNQLKK 406
>gi|15925630|ref|NP_373164.1| hypothetical protein [Staphylococcus
aureus subsp. aureus Mu50]
gi|15928226|ref|NP_375759.1| hypothetical protein, similar to
transcription antiterminator BglG family [Staphylococcus
aureus subsp. aureus N315]
gi|25507957|pir||H90071 hypothetical protein SA2433 [imported] -
Staphylococcus aureus (strain N315)
gi|13702598|dbj|BAB43738.1| SA2433 [Staphylococcus aureus subsp.
aureus N315]
gi|14248415|dbj|BAB58802.1| hypothetical protein [Staphylococcus
aureus subsp. aureus Mu50]
Length = 624
Score = 50.4 bits (119), Expect = 8e-05
Identities = 116/510 (22%), Positives = 213/510 (41%), Gaps = 64/510 (12%)
Query: 3 ILDKKSYDLLFYLLKLEEPETVMAIANALNQSRRKVYYHLEKINDALPSDVPQIVSYPRV 62
+LD+ L F++ + + IA +N S R V + IN D+ IVS
Sbjct: 1 MLDRHLKLLQFFIKNPSKHISSNEIAEHVNVSNRTVRNDIHVINSNFMDDI--IVSIKSK 58
Query: 63 GILLTEKQKAACRLLLDEVTD-YSYVMKSSERLQLSLVSIVVAKDRVTIDRLMQLNDVSR 121
G L Q L+ +T+ Y+++ E+L LS+ ++ ++ + ++ + +
Sbjct: 59 GYQLNTSQYT-----LETITERYTHIQSYKEKLLLSMAYQLLMHNKSQTLQQLEQDYLLS 113
Query: 122 NTILNDLNELRSELAEKEYNLQLQSTKCRGYFLDGHPLSIIQYLYKLLDDIYHNGSSSFI 181
T+LND +R + +++N+ L K +G +DG I + L + +G
Sbjct: 114 KTVLNDYF-VRIQQWCQKFNIVLTIKKKQGIVVDGTDNDITNAIIHL--NQLSSGHVHVE 170
Query: 182 DLFNHKLSQAFGASTYFSKEVLDYFHHYLF--ISQRSLGK-KINSQDGQFMIQILPFILM 238
DL ++L + H + I Q +L + I + D Q ++ IL+
Sbjct: 171 DLILNELPDS---------------HQRMISHIIQETLQQHSIETTDIQIQQLLIHLILI 215
Query: 239 AYRKMRLSPEVQTSLNSDFSLVWQRKEYEIAKELADELEENFQLSLDEIEVGLVAMLMLS 298
RK LS E+ T LN D L+ Q +I + L +L E + M S
Sbjct: 216 IKRKQSLS-ELDT-LNHDAKLISQSCIKQINERLGYDLNEK-------------VINMFS 260
Query: 299 FRKDRDNHLESQDYDDMRATLTSFLKEL----EERYHLHFVHKKDLLRQLLTHCKALLYR 354
F H D R + S++ L ++R H+ F L + L H R
Sbjct: 261 FFIAY--HFNKLDIGIERIFIQSYIDRLIELMQQRIHVPFNEDSILQQNLYNHFSKAYLR 318
Query: 355 KRYGIFSVNPLTEHIKDKYEELFAITSSSVKLLEKAWQIKLTDDDVAYLTIHLGGELRNS 414
I+ NPL IK Y +F ++ L I++++D++A+LTIH +
Sbjct: 319 ITQNIYLNNPLVIEIKKLYPFVFNTLFEAIDKLAIDTDIEMSEDEIAFLTIHFQAAIE-- 376
Query: 415 QQSPNKLKLVIVSDEGIAIQKLLLKQCQRYLTNSDIEAVFTTEQYQSVS--DLMHVDMVV 472
+++ +L +VI G+ + L + S+ +V T + +S++ +VD+++
Sbjct: 377 RRTKTQLNVVIACYYGLGVSNFLETKINNL---SEELSVINTIKLESITHYHFDNVDLLI 433
Query: 473 STSDALESRFPMLVVH-------PVLTDDD 495
+T D + +L H P+ ++DD
Sbjct: 434 TTHDIPKQTLNILPKHLTTIKVAPLFSEDD 463
Database: nr
Posted date: Aug 11, 2003 9:58 AM
Number of letters in database: 479,114,161
Number of sequences in database: 1,487,057
Lambda K H
0.320 0.136 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,340,668
Number of Sequences: 1487057
Number of extensions: 19142715
Number of successful extensions: 60397
Number of sequences better than 1.0e-04: 105
Number of HSP's better than 0.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 60130
Number of HSP's gapped (non-prelim): 151
length of query: 559
length of database: 479,114,161
effective HSP length: 129
effective length of query: 430
effective length of database: 287,283,808
effective search space: 123532037440
effective search space used: 123532037440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 119 (50.4 bits)