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Sample GSM3088 Query DataSets for GSM3088
Status Public on Jul 01, 2003
Title Gastrointestinal Stroma Tumor: patient GIST-5, tumor tissue, 1st repetition
Sample type RNA
 
Source Name Gastrointestinal Stroma Tumor
Organism(s) Homo sapiens
Extracted molecule total RNA
 
Description patientid=GIST-5
sex=f
age=81
birthyear=1915
stage=recurrence
type=GIST
tumorsite=stomach
survival_months=45
died=no
tumorsize.cm=17
CD34_expression=yes
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=2
mucosal_ulceration=no
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211242 reuse=2 date=20-Sep-2000
 
Submission date Dec 11, 2002
Contact name Wolfgang Huber
E-mail(s) w.huber@dkfz.de
Phone +49-6221-424709
Fax +49-6221-423470
URL http://www.dkfz-heidelberg.de/abt0840
Organization name German Cancer Research Center
Department Molecular Genome Analysis
Street address Im Neuenheimer Feld 280
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL9
Series (1)
GSE112 Distinctive gene expression patterns in gastrointestinal stromal tumors identified with cDNA arrays

Data table header descriptions
ID_REF
SIGNAL_RAW Mean spot intensity
BKD_RAW 33 percent quantile of intensities of surrounding pixels within a 4x4 block
VALUE SIGNAL_RAW-BKD_RAW

Data table
ID_REF SIGNAL_RAW BKD_RAW VALUE
1 262980 277729 -14749
2 555660 277729 277931
3 340150 277729 62421
4 220152 277729 -57577
5 278286 277729 557
6 248598 277729 -29131
7 12003544 277729 11725815
8 268224 277729 -9505
9 429359 277729 151630
10 142326 277729 -135403
11 140340 277729 -137389
12 376678 277729 98949
13 11221345 277729 10943616
14 279038 277729 1309
15 350957 277729 73228
16 212837 277729 -64892
17 493720 231361 262359
18 257904 231361 26543
19 296564 231361 65203
20 294748 231361 63387

Total number of rows: 36865

Table truncated, full table size 965 Kbytes.




Supplementary data files not provided

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