proteins
| 115 proteins |
IQ | COG0236 | Acyl carrier protein | Help | |
|---|---|---|---|---|---|
| 5 from | query genome Mesorhizobium loti (Rhizobiales | Alphaproteobacteria) | ||||
| mlr1174 mlr4951 mlr5821 msl6741 msr7851 | ||||
88 letters 0
0 434 = |||msl6741 (88) = -6
5 170 = |||SMb20651 (88) = -7
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msl6741
(88 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
msl6741 171 2e-43
SMb20651 70 9e-13
MA3718 55 4e-08
MA1027 55 4e-08
AGc3076 52 3e-07
SPy1310 39 0.002
RSp0641_2 37 0.008
SP2174 35 0.032
BU352 33 0.092
BH1509 33 0.12
CAC1747 30 1.0
aq_999_1 30 1.3
CAC3577 29 1.7
AF1958 29 2.3
CAC0382_2 28 3.9
CT236 27 8.6
# >msl6741
# Length = 88
#
# Score = 171 bits (434), Expect = 2e-43
# Identities = 88/88 (100%), Positives = 88/88 (100%)
#
# Query: 1 MLTIKDRAGTYSEQIRNFLVSNFYVSDVKALMNDTSLLDQGIVDSTGVLEIIGFIEETFG 60
# MLTIKDRAGTYSEQIRNFLVSNFYVSDVKALMNDTSLLDQGIVDSTGVLEIIGFIEETFG
# Sbjct: 1 MLTIKDRAGTYSEQIRNFLVSNFYVSDVKALMNDTSLLDQGIVDSTGVLEIIGFIEETFG 60
#
# Query: 61 IIVEDSELLPENLDSIQGIEQYIIRKMN 88
# IIVEDSELLPENLDSIQGIEQYIIRKMN
# Sbjct: 61 IIVEDSELLPENLDSIQGIEQYIIRKMN 88
#
#
# >SMb20651
# Length = 88
#
# Score = 70.1 bits (170), Expect = 9e-13
# Identities = 31/75 (41%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
#
# Query: 13 EQIRNFLVSNFYVSD-VKALMNDTSLLDQGIVDSTGVLEIIGFIEETFGIIVEDSELLPE 71
# ++++ F++ NF D L +D SL++ I+DSTGVLE++ FIE+ FGI++ D++++P+
# Sbjct: 7 DKVKAFVIENFLFGDSAYELADDASLIENDIIDSTGVLELVAFIEDDFGIVMADADIVPQ 66
#
# Query: 72 NLDSIQGIEQYIIRK 86
# NLDS+ I +I K
# Sbjct: 67 NLDSLARISAFIEAK 81
#
#
# >MA3718
# Length = 81
#
# Score = 54.7 bits (130), Expect = 4e-08
# Identities = 28/73 (38%), Positives = 44/73 (59%)
#
# Query: 13 EQIRNFLVSNFYVSDVKALMNDTSLLDQGIVDSTGVLEIIGFIEETFGIIVEDSELLPEN 72
# + I ++L N ++ L ++ SL GI+DS G+LE+I +I ET+ I + + L PEN
# Sbjct: 6 DNILDYLKENSFMEREAVLGDNDSLTQNGIMDSIGLLELIDYICETYSIEIPEEMLTPEN 65
#
# Query: 73 LDSIQGIEQYIIR 85
# DS++GI I R
# Sbjct: 66 FDSLEGITTLINR 78
#
#
# >MA1027
# Length = 81
#
# Score = 54.7 bits (130), Expect = 4e-08
# Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
#
# Query: 13 EQIRNFLV----SNFYVSDVKALMNDTSLLDQGIVDSTGVLEIIGFIEETFGIIVEDSEL 68
# EQI+N L+ +N ++ L + SL GI+DS G+LE+I +I E + I + + L
# Sbjct: 2 EQIKNCLIDYLKANSFMDKDTHLEDSDSLTQNGIIDSIGLLELIDYITEKYSIEIPEEML 61
#
# Query: 69 LPENLDSIQGIEQYI 83
# PEN D++QGI I
# Sbjct: 62 TPENFDTLQGISNMI 76
#
#
# >AGc3076
# Length = 87
#
# Score = 51.6 bits (122), Expect = 3e-07
# Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
#
# Query: 1 MLTIKDRAGTYSEQIRNFLVSNFYVSDVKALMNDTSLLDQGIVDSTGVLEIIGFIEETFG 60
# ML K+ ++ I ++L F DT LL+ G++DS G LE++ F+ E+FG
# Sbjct: 1 MLVAKENEIDVADTIYSYLADRFPA--YTPFSADTELLEGGVIDSLGFLELMVFLGESFG 58
#
# Query: 61 IIVEDSELLPENLDSIQGIEQYIIRK 86
# II+ D P+NL + + +++R+
# Sbjct: 59 IILNDEHFTPDNLGTPADLITFVLRE 84
#
#
# >SPy1310
# Length = 79
#
# Score = 39.3 bits (90), Expect = 0.002
# Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
#
# Query: 19 LVSNFYVSDVKALMNDTSLLDQGIVDSTGVLEIIGFIEETFGIIVEDSELLPENLDS--- 75
# L ++ DV +M D L D G++DS G +E+I +E TF I V SE ++ ++
# Sbjct: 10 LFDRLFMEDVSEMM-DEDLFDAGVLDSLGTVELIVELESTFNIKVPISEFGRDDWNTVTK 68
#
# Query: 76 -IQGIEQ 81
# +QG+E+
# Sbjct: 69 IVQGVEE 75
#
#
# >RSp0641_2
# Length = 1176
#
# Score = 37.0 bits (84), Expect = 0.008
# Identities = 24/69 (34%), Positives = 39/69 (55%), Gaps = 2/69 (2%)
#
# Query: 19 LVSNFYVSDVKALMNDTSLLDQGIVDSTGVLEIIGFIEETFGIIVEDSELLPENLDSIQG 78
# +V+ +DV + D LL+ G DS +++ IG IE+T+G+ V +L E L +I
# Sbjct: 919 MVAKMLHADVARVDPDLPLLELG-ADSLMMVQAIGSIEQTYGVTVTVRQLF-EELTTIAA 976
#
# Query: 79 IEQYIIRKM 87
# I Y+ R+M
# Sbjct: 977 IADYVDRQM 985
#
#
# >SP2174
# Length = 79
#
# Score = 35.0 bits (79), Expect = 0.032
# Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
#
# Query: 19 LVSNFYVSDVKALMNDTSLLDQGIVDSTGVLEIIGFIEETFGIIVEDSELLPENLDSIQG 78
# ++ ++ DV +M D L D G++DS G +E+I IE F I V +E ++ ++
# Sbjct: 10 IIDELFMEDVSDMM-DEDLFDAGVLDSMGTVELIVEIENRFDIRVPVTEFGRDDWNTANK 68
#
# Query: 79 IEQYIIRKMN 88
# I I+ N
# Sbjct: 69 IIAGIVELQN 78
#
#
# >BU352
# Length = 80
#
# Score = 33.5 bits (75), Expect = 0.092
# Identities = 21/74 (28%), Positives = 37/74 (49%), Gaps = 3/74 (4%)
#
# Query: 13 EQIRNFLVSNFYVSDVKALMNDTSLLDQGIVDSTGVLEIIGFIEETFGIIVEDSELLPEN 72
# E+I+ + + K + ND S +D DS +E+I +EE F I + D E E
# Sbjct: 6 ERIKKIIFEKLDIKQEK-IFNDASFIDDLGADSLDTVELIMALEEEFDIEISDEE--AEK 62
#
# Query: 73 LDSIQGIEQYIIRK 86
# ++++Q +I +K
# Sbjct: 63 INTVQKSIDFIQKK 76
#
#
# >BH1509
# Length = 500
#
# Score = 33.1 bits (74), Expect = 0.12
# Identities = 15/43 (34%), Positives = 25/43 (57%)
#
# Query: 31 LMNDTSLLDQGIVDSTGVLEIIGFIEETFGIIVEDSELLPENL 73
# +MN ++ D+G+ +TG+LE + E+ I D ELL + L
# Sbjct: 384 MMNSKTVTDKGVERATGMLESLTISEQMMSSIASDCELLDDRL 426
#
#
# >CAC1747
# Length = 77
#
# Score = 30.0 bits (66), Expect = 1.0
# Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
#
# Query: 13 EQIRNFLVSNFYVSDVKALMNDTSLLDQGIVDSTGVLEIIGFIEETFGIIVEDSELLPEN 72
# E++++ + + D + ++S +D DS ++E+I +EE F I + D E E
# Sbjct: 4 EKVKDIIADQLGI-DATEIKMESSFIDDLGADSLDIVELIMALEEEFDIEMPDEE--AEK 60
#
# Query: 73 LDSIQGIEQYI 83
# + S+ + YI
# Sbjct: 61 VSSVGDVVNYI 71
#
#
# >aq_999_1
# Length = 600
#
# Score = 29.6 bits (65), Expect = 1.3
# Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
#
# Query: 25 VSDVKALMNDTSLLDQGIVDSTGVLEIIGFIEETFGIIVEDSEL 68
# +S + D +D G+ DS +E++GFIE FG+ + + EL
# Sbjct: 536 ISQKEVKPGDHLEIDLGL-DSLAKVELLGFIETNFGVSLSEEEL 578
#
#
# >CAC3577
# Length = 76
#
# Score = 29.3 bits (64), Expect = 1.7
# Identities = 16/44 (36%), Positives = 27/44 (61%)
#
# Query: 43 VDSTGVLEIIGFIEETFGIIVEDSELLPENLDSIQGIEQYIIRK 86
# VDS + +II +EE F I +ED+E + D+++ IE + +K
# Sbjct: 33 VDSLDLFQIIIELEEKFDIQIEDTENIKTVGDAVKFIEAQLKKK 76
#
#
# >AF1958
# Length = 391
#
# Score = 28.9 bits (63), Expect = 2.3
# Identities = 13/33 (39%), Positives = 21/33 (63%)
#
# Query: 50 EIIGFIEETFGIIVEDSELLPENLDSIQGIEQY 82
# E + F+E+T G + DS+L + SIQG++ Y
# Sbjct: 158 EFVDFLEKTTGRELSDSKLRDTVIKSIQGVKAY 190
#
#
# >CAC0382_2
# Length = 473
#
# Score = 28.1 bits (61), Expect = 3.9
# Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
#
# Query: 18 FLVSNFYVSDVKALMNDTSLLDQGIVDSTGVLEIIGFIEETFGIIVEDSELLPENLDSIQ 77
# FLVS+F V N +L ++D I + +T +I++ S +L EN+D+I
# Sbjct: 319 FLVSSFPVDLNIKQYNMHDVLSMNVIDE------IQQLVDTKSVILKLSLILKENIDNID 372
#
# Query: 78 GIEQY 82
# G + Y
# Sbjct: 373 GKQLY 377
#
#
# >CT236
# Length = 77
#
# Score = 26.9 bits (58), Expect = 8.6
# Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
#
# Query: 13 EQIRNFLVSNFYVS--DVKALMNDTSLLDQGIVDSTGVLEIIGFIEETFGIIVEDSELLP 70
# + ++ +V VS DVK D+S ++ DS + E+I +EE F + + +
# Sbjct: 5 DDVKAIIVDQLGVSPEDVKV---DSSFIEDLNADSLDLTELIMTLEEKFAFEISEDD--A 59
#
# Query: 71 ENLDSIQGIEQYIIRKMN 88
# E L ++ + +YI + N
# Sbjct: 60 EQLRTVGDVIKYIQERQN 77
#
#
Database: myva
Posted date: Sep 17, 2002 10:27 AM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.319 0.140 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,558,653
Number of Sequences: 192987
Number of extensions: 354281
Number of successful extensions: 1141
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1125
Number of HSP's gapped (non-prelim): 40
length of query: 88
length of database: 59,019,183
effective HSP length: 64
effective length of query: 24
effective length of database: 46,668,015
effective search space: 1120032360
effective search space used: 1120032360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
S2: 58 (26.9 bits)