proteins
| 115 proteins |
IQ | COG0236 | Acyl carrier protein | Help | |
|---|---|---|---|---|---|
| 5 from | query genome Mesorhizobium loti (Rhizobiales | Alphaproteobacteria) | ||||
| mlr1174 mlr4951 mlr5821 msl6741 msr7851 | ||||
88 letters (r) 0
0 380 = ||| 1 msl6741 (88) = -6
5 150 = ||| 2 SMb20651 (88) = -11
900
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msl6741
(88 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
msl6741 150 4e-37
SMb20651 62 2e-10
MA1027 48 3e-06
AGc3076 48 4e-06
MA3718 48 5e-06
RSp0641_2 38 0.004
SPy1310 33 0.12
SSO2518 29 1.7
SP2174 29 1.9
AF1958 28 3.2
DR1942 28 5.2
SP1489 27 5.9
SA0802 27 8.4
SPBC776.10c 27 9.2
# >msl6741
# Length = 88
#
# Score = 150 bits (380), Expect = 4e-37
# Identities = 88/88 (100%), Positives = 88/88 (100%)
#
# Query: 1 MLTIKDRAGTYSEQIRNFLVSNFYVSDVKALMNDTSLLDQGIVDSTGVLEIIGFIEETFG 60
# MLTIKDRAGTYSEQIRNFLVSNFYVSDVKALMNDTSLLDQGIVDSTGVLEIIGFIEETFG
# Sbjct: 1 MLTIKDRAGTYSEQIRNFLVSNFYVSDVKALMNDTSLLDQGIVDSTGVLEIIGFIEETFG 60
#
# Query: 61 IIVEDSELLPENLDSIQGIEQYIIRKMN 88
# IIVEDSELLPENLDSIQGIEQYIIRKMN
# Sbjct: 61 IIVEDSELLPENLDSIQGIEQYIIRKMN 88
#
#
# >SMb20651
# Length = 88
#
# Score = 62.4 bits (150), Expect = 2e-10
# Identities = 30/72 (41%), Positives = 52/72 (71%), Gaps = 1/72 (1%)
#
# Query: 13 EQIRNFLVSNFYVSD-VKALMNDTSLLDQGIVDSTGVLEIIGFIEETFGIIVEDSELLPE 71
# ++++ F++ NF D L +D SL++ I+DSTGVLE++ FIE+ FGI++ D++++P+
# Sbjct: 7 DKVKAFVIENFLFGDSAYELADDASLIENDIIDSTGVLELVAFIEDDFGIVMADADIVPQ 66
#
# Query: 72 NLDSIQGIEQYI 83
# NLDS+ I +I
# Sbjct: 67 NLDSLARISAFI 78
#
#
# >MA1027
# Length = 81
#
# Score = 48.1 bits (113), Expect = 3e-06
# Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
#
# Query: 13 EQIRN----FLVSNFYVSDVKALMNDTSLLDQGIVDSTGVLEIIGFIEETFGIIVEDSEL 68
# EQI+N +L +N ++ L + SL GI+DS G+LE+I +I E + I + + L
# Sbjct: 2 EQIKNCLIDYLKANSFMDKDTHLEDSDSLTQNGIIDSIGLLELIDYITEKYSIEIPEEML 61
#
# Query: 69 LPENLDSIQGIEQYI 83
# PEN D++QGI I
# Sbjct: 62 TPENFDTLQGISNMI 76
#
#
# >AGc3076
# Length = 87
#
# Score = 47.8 bits (112), Expect = 4e-06
# Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
#
# Query: 1 MLTIKDRAGTYSEQIRNFLVSNFYVSDVKALMNDTSLLDQGIVDSTGVLEIIGFIEETFG 60
# ML K+ ++ I ++L F DT LL+ G++DS G LE++ F+ E+FG
# Sbjct: 1 MLVAKENEIDVADTIYSYLADRF--PAYTPFSADTELLEGGVIDSLGFLELMVFLGESFG 58
#
# Query: 61 IIVEDSELLPENLDSIQGIEQYIIRK 86
# II+ D P+NL + + +++R+
# Sbjct: 59 IILNDEHFTPDNLGTPADLITFVLRE 84
#
#
# >MA3718
# Length = 81
#
# Score = 47.8 bits (112), Expect = 5e-06
# Identities = 28/73 (38%), Positives = 44/73 (59%)
#
# Query: 13 EQIRNFLVSNFYVSDVKALMNDTSLLDQGIVDSTGVLEIIGFIEETFGIIVEDSELLPEN 72
# + I ++L N ++ L ++ SL GI+DS G+LE+I +I ET+ I + + L PEN
# Sbjct: 6 DNILDYLKENSFMEREAVLGDNDSLTQNGIMDSIGLLELIDYICETYSIEIPEEMLTPEN 65
#
# Query: 73 LDSIQGIEQYIIR 85
# DS++GI I R
# Sbjct: 66 FDSLEGITTLINR 78
#
#
# >RSp0641_2
# Length = 1176
#
# Score = 38.1 bits (87), Expect = 0.004
# Identities = 24/69 (34%), Positives = 39/69 (55%), Gaps = 2/69 (2%)
#
# Query: 19 LVSNFYVSDVKALMNDTSLLDQGIVDSTGVLEIIGFIEETFGIIVEDSELLPENLDSIQG 78
# +V+ +DV + D LL+ G DS +++ IG IE+T+G+ V +L E L +I
# Sbjct: 919 MVAKMLHADVARVDPDLPLLELG-ADSLMMVQAIGSIEQTYGVTVTVRQLF-EELTTIAA 976
#
# Query: 79 IEQYIIRKM 87
# I Y+ R+M
# Sbjct: 977 IADYVDRQM 985
#
#
# >SPy1310
# Length = 79
#
# Score = 33.1 bits (74), Expect = 0.12
# Identities = 22/63 (34%), Positives = 35/63 (54%), Gaps = 1/63 (1%)
#
# Query: 19 LVSNFYVSDVKALMNDTSLLDQGIVDSTGVLEIIGFIEETFGIIVEDSELLPENLDSIQG 78
# L ++ DV +M D L D G++DS G +E+I +E TF I V SE ++ +++
# Sbjct: 10 LFDRLFMEDVSEMM-DEDLFDAGVLDSLGTVELIVELESTFNIKVPISEFGRDDWNTVTK 68
#
# Query: 79 IEQ 81
# I Q
# Sbjct: 69 IVQ 71
#
#
# >SSO2518
# Length = 353
#
# Score = 29.3 bits (64), Expect = 1.7
# Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
#
# Query: 44 DSTGVL-EIIGFIEETFGIIVEDSELLPENLDSI 76
# D G+L I F+ E FGI + DS++LP N + I
# Sbjct: 288 DYEGILVPTIAFVSERFGIQIFDSKILPSNSEII 321
#
#
# >SP2174
# Length = 79
#
# Score = 29.3 bits (64), Expect = 1.9
# Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
#
# Query: 19 LVSNFYVSDVKALMNDTSLLDQGIVDSTGVLEIIGFIEETFGIIVEDSELLPENLDSIQG 78
# ++ ++ DV +M D L D G++DS G +E+I IE F I V +E ++ ++
# Sbjct: 10 IIDELFMEDVSDMM-DEDLFDAGVLDSMGTVELIVEIENRFDIRVPVTEFGRDDWNTANK 68
#
# Query: 79 IEQYIIRKMN 88
# I I+ N
# Sbjct: 69 IIAGIVELQN 78
#
#
# >AF1958
# Length = 391
#
# Score = 28.5 bits (62), Expect = 3.2
# Identities = 13/33 (39%), Positives = 21/33 (63%)
#
# Query: 50 EIIGFIEETFGIIVEDSELLPENLDSIQGIEQY 82
# E + F+E+T G + DS+L + SIQG++ Y
# Sbjct: 158 EFVDFLEKTTGRELSDSKLRDTVIKSIQGVKAY 190
#
#
# >DR1942
# Length = 110
#
# Score = 27.7 bits (60), Expect = 5.2
# Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 16/80 (20%)
#
# Query: 16 RNFLVSNFYVSDVKALMNDTSLLDQGIV------------DSTGVLEIIGFIEETFGIIV 63
# RN +++ F DVK ++ D +D+G V DS +E+I +E+ FG+ +
# Sbjct: 31 RNLVMATF--DDVKDVIVDKLGVDEGKVTPEARFVEDLGADSLETVELIMGLEDKFGVTI 88
#
# Query: 64 EDSELLPENLDSIQGIEQYI 83
# D E + ++Q YI
# Sbjct: 89 PDEA--AETIRTVQAAVDYI 106
#
#
# >SP1489
# Length = 398
#
# Score = 27.3 bits (59), Expect = 5.9
# Identities = 14/37 (37%), Positives = 21/37 (55%)
#
# Query: 38 LDQGIVDSTGVLEIIGFIEETFGIIVEDSELLPENLD 74
# +D+GIV +EI+G EET +V E+ + LD
# Sbjct: 235 IDRGIVKVNDEIEIVGIKEETQKAVVTGVEMFRKQLD 271
#
#
# >SA0802
# Length = 402
#
# Score = 26.9 bits (58), Expect = 8.4
# Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
#
# Query: 22 NFYVSDVKALMNDTSLLD--QGIVDSTGVLEIIGFIEETFGII-VEDSELLPENLDSIQG 78
# NF ++V + D ++ QGI D ++ +GF+ ETFGI ++D EN+ + +
# Sbjct: 77 NFVQAEVTKIDRDAKKVETNQGIYDFDILVVALGFVSETFGIEGMKDHAFQIENVITARE 136
#
# Query: 79 IEQYI 83
# + ++I
# Sbjct: 137 LSRHI 141
#
#
# >SPBC776.10c
# Length = 675
#
# Score = 26.9 bits (58), Expect = 9.2
# Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
#
# Query: 35 TSLLD-QGIVDSTGVLEIIGFIEETFGIIVEDSELLPENLDSIQGIEQYIIRKM 87
# TS+LD IV V+EI+GF E F IV D ++ L I+ +E + ++M
# Sbjct: 367 TSVLDLSDIVRLYNVIEILGFYREAFSKIVHDECII---LRIIKTLEDFTYQRM 417
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.319 0.140 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,558,653
Number of Sequences: 192987
Number of extensions: 354281
Number of successful extensions: 1141
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1125
Number of HSP's gapped (non-prelim): 40
length of query: 88
length of database: 59,019,183
effective HSP length: 64
effective length of query: 24
effective length of database: 46,668,015
effective search space: 1120032360
effective search space used: 1120032360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
S2: 58 (26.9 bits)