Yersinia pestis CO92 proteome

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200934-201033 (1-100) 201034-201133 (101-200) 201134-201233 (201-300) 201234-201333 (301-400) 201334-201433 (401-500)
201434-201533 (501-600) 201534-201633 (601-700) [201634-201733 (701-800)] 201734-201833 (801-900) 201834-201933 (901-1000)
201934-202033 (1001-1100) 202034-202133 (1101-1200) 202134-202233 (1201-1300) 202234-202333 (1301-1400) 202334-202433 (1401-1500)
202434-202533 (1501-1600) 202534-202633 (1601-1700) 202634-202733 (1701-1800) 202734-202833 (1801-1900) 202834-202933 (1901-2000)
202934-203033 (2001-2100) 203034-203133 (2101-2200) 203134-203233 (2201-2300) 203234-203333 (2301-2400) 203334-203433 (2401-2500)
203434-203533 (2501-2600) 203534-203633 (2601-2700) 203634-203733 (2701-2800) 203734-203833 (2801-2900) 203834-203933 (2901-3000)
203934-204033 (3001-3100) 204034-204133 (3101-3200) 204134-204233 (3201-3300) 204234-204333 (3301-3400) 204334-204433 (3401-3500)
204434-204533 (3501-3600) 204534-204633 (3601-3700) 204634-204733 (3701-3800) 204734-204818 (3801-3885)


Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
201634 hypothetical YPO0736 putative regulatory protein
N-terminus similar to the N-terminus regions of Photobacterium profundum protein required for pressure-responsive gene expression ToxR TR:O66013 (EMBL:U77060) (290 aa) fasta scores: E(): 1.6e-06, 30.0% id in 150 aa, and to Vibrio fischeri transmembrane transcriptional activator ToxR TR:Q56689 (EMBL:L29053) (316 aa) fasta scores: E(): 2.1e-06, 28.5% id in 172 aa
genbank 16121054 NP_404367.1 348 793709 794755
201635 flaA1 hypothetical YPO0737 putative flagellin
Similar to Legionella pneumophila FlaA TR:Q48824 (EMBL:X83232) (475 aa) fasta scores: E(): 3.7e-15, 26.9% id in 476 aa, and to Clostridium chauvoei flagellin FliC TR:BAB13814 (EMBL:D89073) (413 aa) fasta scores: E(): 2.1e-14, 29.0% id in 417 aa. Similar to YPO0738 (79.8% identity in 406 aa overlap) and YPO0739 (78.4% identity in 408 aa overlap).
genbank 16121055 NP_404368.1 404 795381 796595
201636 flaA2 hypothetical YPO0738 putative flagellin
Similar to Pseudomonas aeruginosa flagellin FlaA SW:FLAA_PSEAE (P21184) (393 aa) fasta scores: E(): 1.3e-19, 31.2% id in 401 aa, and to Bordetella bronchiseptica flagellin FlaA SW:FLAA_BORBR (Q06064) (390 aa) fasta scores: E(): 7.2e-19, 30.6% id in 402 aa. Similar to YPO0739 (90.5% identity in 401 aa overlap) and YPO0737 (79.8% identity in 406 aa overlap).
genbank 16121056 NP_404369.1 399 797110 798309
201637 flaA3 hypothetical YPO0739 putative flagellin
Similar to Pseudomonas aeruginosa flagellin FlaA SW:FLAA_PSEAE (P21184) (393 aa) fasta scores: E(): 1.1e-20, 30.5% id in 403 aa, and to Clostridium chauvoei flagellin FliC TR:BAB13814 (EMBL:D89073) (413 aa) fasta scores: E(): 2e-15, 30.9% id in 421 aa. Similar to YPO0738 (90.5% identity in 401 aa overlap) and YPO0737 (78.4% identity in 408 aa overlap).
genbank 16121057 NP_404370.1 401 798592 799797
201638 fliD hypothetical YPO0740 putative flagellar hook-associated protein
Similar to Salmonella typhimurium flagellar hook-associated protein 2 FliD SW:FLID_SALTY (P16328) (466 aa) fasta scores: E(): 2.4e-07, 25.3% id in 443 aa, and to Vibrio parahaemolyticus flagellar hook-associated protein 2 LafB SW:LAFB_VIBPA (Q03475) (445 aa) fasta scores: E(): 2.7e-07, 27.8% id in 450 aa
genbank 16121058 NP_404371.1 425 800017 801294
201639 fliS hypothetical YPO0741 putative flagellar protein
Similar to Vibrio parahaemolyticus flagellar protein LafC TR:P74950 (EMBL:U52957) (128 aa) fasta scores: E(): 9.5e-18, 44.3% id in 122 aa, and to Salmonella typhimurium flagellar protein FliS SW:FLIS_SALTY (P26609) (135 aa) fasta scores: E(): 1.5e-12, 36.1% id in 119 aa
genbank 16121059 NP_404372.1 126 801304 801684
201640 hypothetical YPO0742 hypothetical protein
Weakly similar to N-terminus of Haemophilus influenzae phosphohistidine phosphatase SixA homologue HI1338 SW:SIXA_HAEIN (P44164) (164 aa) fasta scores: E(): 6.2, 26.5% id in 98 aa
genbank 16121060 NP_404373.1 108 801686 802012
201641 hypothetical YPO0743 putative flagellar hook-length control protein
Similar to Escherichia coli flagellar hook-length control protein FliK SW:FLIK_ECOLI (P52614) (375 aa) fasta scores: E(): 0.0085, 22.6% id in 381 aa
genbank 16121061 NP_404374.1 393 802014 803195
201642 hypothetical YPO0744 putative flagellar biogenesis protein
Similar to C-terminal regions of Vibrio parahaemolyticus possible flagellar biogenesis protein LafF TR:P74953 (EMBL:U52957) (166 aa) fasta scores: E(): 0.0008, 25.7% id in 109 aa, and to Pseudomonas putida possible flagellar biogenesis protein FliL TR:Q9R9X9 (EMBL:AF031418) (165 aa) fasta scores: E(): 0.047, 20.5% id in 151 aa
genbank 16121062 NP_404375.1 156 803234 803704
201643 fliA hypothetical YPO0745 flagellar biosynthesis sigma factor FliA
directs late flagellar gene expression
genbank 16121063 NP_404376.1 231 803710 804405
201644 motA hypothetical YPO0746 flagellar motor protein
Similar to Escherichia coli chemotaxis protein MotA SW:MOTA_ECOLI (P09348) (295 aa) fasta scores: E(): 0, 37.9% id in 277 aa, and to Vibrio parahaemolyticus chemotaxis protein LafT SW:LAFT_VIBPA (Q03477) (285 aa) fasta scores: E(): 0, 56.4% id in 280 aa
genbank 16121064 NP_404377.1 288 804421 805287
201645 motB hypothetical YPO0747 flagellar motor protein
Similar to Escherichia coli chemotaxis protein MotB protein SW:MOTB_ECOLI (P09349) (308 aa) fasta scores: E(): 1.1e-23, 32.6% id in 310 aa, and to Vibrio parahaemolyticus chemotaxis protein LafU SW:LAFU_VIBPA (Q03478) (330 aa) fasta scores: E(): 0, 40.1% id in 297 aa
genbank 16121065 NP_404378.1 303 805287 806198
201646 hypothetical YPO0748 hypothetical protein
Poor database hits to the full length CDS. Weakly similar to internal fragment of Bacillus thuringiensis transposase TR:Q45711 (EMBL:L29100) (262 aa) fasta scores: E(): 7.9, 34.0% id in 47 aa
genbank 16121066 NP_404379.1 62 806267 806455
201647 hypothetical YPO0749 hypothetical protein
no significant database hits to the full length CDS. Similar to C-terminus of Salmonella typhimurium LT2 protein STMF1.40 TR:Q9L9J5 (EMBL:AF170176) (114 aa) fasta scores: E(): 0.0016, 26.2% id in 103 aa, and to N-terminus of Bacillus halodurans BH2153 protein bh2153 TR:Q9KAY3 (EMBL:AP001514) (150 aa) fasta scores: E(): 4.4, 25.8% id in 128 aa
genbank 16121067 NP_404380.1 198 806658 807254
201648 hypothetical YPO0750 hypothetical protein
Poor database matches, similarity to the internal regions of Drosophila melanogaster mitochondrial cytochrome B SW:CYB_DROME (P18935) (378 aa) fasta scores: E(): 1.1, 23.6% id in 144 aa, and to Chrysodidymus synuroideus mitochondrial apocytochrome B TR:Q9MGB4 (EMBL:AF222718) (389 aa) fasta scores: E(): 1.6, 23.7% id in 131 aa
genbank 16121068 NP_404381.1 151 807251 807706
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
201649 hypothetical YPO0751 hypothetical protein
Similar to internal regions of Pseudomonas aeruginosa hypothetical protein PA0659 TR:AAG04048 (EMBL:AE004500) (358 aa) fasta scores: E(): 0.26, 28.7% id in 87 aa, and to Bacillus subtilis hypothetical protein YrbD TR:O32060 (EMBL:Z99118) (484 aa) fasta scores: E(): 5.7, 29.3% id in 99 aa
genbank 16121069 NP_404382.1 93 807780 808061
201650 hypothetical YPO0754 hypothetical protein
Similar to Escherichia coli hypothetical protein YjeO SW:YJEO_ECOLI (P39284) (104 aa) fasta scores: E(): 9.2e-07, 27.8% id in 97 aa
genbank 16121070 NP_404383.1 100 808939 809241
201651 hypothetical YPO0755 insertion element DNA-binding protein
Similar to Escherichia coli insertion element IS1397 hypothetical 20.1 kDa protein SW:YI9A_ECOLI (Q47309) (173 aa) fasta scores: E(): 2.3e-20, 39.6% id in 169 aa.
genbank 16121071 NP_404384.1 171 809842 810357
201652 hypothetical YPO0756 IS1661 transposase
Similar to Escherichia coli insertion sequence IS1397 transposase, OrfB TR:Q47310 (EMBL:X92970) (240 aa) fasta scores: E(): 0, 53.0% id in 234 aa
genbank 16121072 NP_404385.1 261 810411 811196
201653 hypothetical YPO0758 LacI-family regulatory protein
Similar to Escherichia coli transcriptional repressor CytR SW:CYTR_ECOLI (P06964) (341 aa) fasta scores: E(): 1.1e-25, 32.0% id in 331 aa, and to Haemophilus influenzae ribose operon repressor RbsR SW:RBSR_HAEIN (P44329) (331 aa) fasta scores: E(): 2.7e-27, 32.5% id in 329 aa
genbank 16121073 NP_404386.1 331 812567 813562
201654 hypothetical YPO0759 Sodium:sulfate symporter-family protein
Similar to Haemophilus influenzae hypothetical protein HI0608 SW:Y608_HAEIN (Q57486) (461 aa) fasta scores: E(): 0, 58.1% id in 451 aa, and to Vibrio cholerae transporter, NadC VCA0025 TR:Q9KNE0 (EMBL:AE004346) (462 aa) fasta scores: E(): 0, 54.6% id in 454 aa
genbank 16121074 NP_404387.1 456 813844 815214
201655 hypothetical YPO0760 hypothetical protein
Similar to Escherichia coli hypothetical protein YjaA SW:YJAA_ECOLI (P09162) (127 aa) fasta scores: E(): 9.2e-13, 41.7% id in 120 aa
genbank 16121075 NP_404388.1 137 815394 815807
201656 hypothetical YPO0761 hypothetical protein
no significant database hits
genbank 16121076 NP_404389.1 80 816351 816593
201657 hypothetical YPO0762 hypothetical protein
Similar to Pseudomonas aeruginosa hypothetical protein PA2684 TR:AAG06072 (EMBL:AE004696) (1317 aa) fasta scores: E(): 3.9e-30, 27.3% id in 1251 aa, and to Escherichia coli putative rhs protein RhsD SW:RHSD_ECOLI (P16919) (1426 aa) fasta scores: E(): 1e-24, 26.5% id in 1288 aa. The CDS has an extension at the N-terminal end in comparison to other orthologues, possible alternative translational starts
genbank 16121077 NP_404390.1 1438 816868 821184
201658 hypothetical YPO0763 hypothetical protein
Poor database hits. C-terminal region of CDS is similar to N-terminal region of Deinococcus radiodurans possible carboxypeptidase DR2423 TR:Q9RRR3 (EMBL:AE002072) (503 aa) fasta scores: E(): 9.2, 21.9% id in 274 aa
genbank 16121078 NP_404391.1 439 821198 822517
201659 hypothetical YPO0764 hypothetical protein
Similar to Escherichia coli hypothetical protein VgrG TR:O52672 (EMBL:AF044503) (713 aa) fasta scores: E(): 0, 43.2% id in 713 aa, and to Vibrio cholerae hypothetical protein VC1416 TR:Q9KS45 (EMBL:AE004220) (1163 aa) fasta scores: E(): 0, 39.1% id in 701 aa. Similar to the C-terminal regions of YPO3606 (77.2% identity in 615 aa overlap) and YPO3613 (76.2% identity in 621 aa overlap)
genbank 16121079 NP_404392.1 741 822543 824768
201660 gntP hypothetical YPO0767 putative gluconate transporter
Similar to Escherichia coli high-affinity gluconate transporter GntP SW:GNTP_ECOLI (P39373) (447 aa) fasta scores: E(): 0, 82.7% id in 445 aa, and to Escherichia coli high-affinity gluconate transporter GntT SW:GNTT_ECOLI (P39835) (437 aa) fasta scores: E(): 0, 41.7% id in 439 aa
genbank 16121080 NP_404393.1 447 830118 831461
201661 hypothetical YPO0768 hypothetical protein
no significant database hits
genbank 16121081 NP_404394.1 132 833001 833399
201662 hypothetical YPO0769 hypothetical protein
Similar to Salmonella typhimurium hypothetical protein SinI TR:Q9XCJ0 (EMBL:AF140550) (319 aa) fasta scores: E(): 3.2e-05, 27.3% id in 326 aa
genbank 16121082 NP_404395.1 291 833835 834710
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
201663 hypothetical YPO0770 ABC-transporter transmembrane protein
Similar to Yersinia enterocolitica, high-pathogenicity island, lipoprotein inner membrane ABC-transporter, Irp6 TR:Q9X9I5 (EMBL:AJ132668) (600 aa) fasta scores: E(): 0, 30.8% id in 582 aa, and to Yersinia pestis hypothetical protein YbtQ TR:Q9Z375 (EMBL:AL031866) (600 aa) fasta scores: E(): 0, 33.7% id in 594 aa
genbank 16121083 NP_404396.1 585 835033 836790
201664 hypothetical YPO0771 ABC-transporter transmembrane protein
Similar to Yersinia enterocolitica, high-pathogenicity island, lipoprotein inner membrane ABC-transporter, Irp6 TR:Q9X9I5 (EMBL:AJ132668) (600 aa) fasta scores: E(): 0, 32.4% id in 574 aa, and to Yersinia pestis hypothetical protein protein YbtP TR:Q9R7V3 (EMBL:AL031866) (600 aa) fasta scores: E(): 0, 32.6% id in 574 aa
genbank 16121084 NP_404397.1 590 836783 838555
201665 hypothetical YPO0772 hypothetical protein
Similar to Yersinia enterocolitica, high-pathogenicity island, signal transducer protein Irp8 TR:Q9X9I7 (EMBL:AJ132668) (462 aa) fasta scores: E(): 3.9e-22, 27.9% id in 416 aa, and to Yersinia pestis protein hypothetical protein YbtX TR:Q9ZC28 (EMBL:AL031866) (462 aa) fasta scores: E(): 8e-22, 27.1% id in 421 aa
genbank 16121085 NP_404398.1 434 838555 839859
201666 hypothetical YPO0773 putative thioesterase
Similar to Pseudomonas aeruginosa probable pyochelin biosynthetic protein PchC TR:AAG07617 (EMBL:AE004840) (251 aa) fasta scores: E(): 1.1e-30, 38.6% id in 236 aa, and to C-terminus of Streptomyces griseus probable cadicidin biosynthesis thioesterase SW:PABT_STRGR (P33586) (361 aa) fasta scores: E(): 6e-25, 36.4% id in 225 aa
genbank 16121086 NP_404399.1 254 839849 840613
201667 hypothetical YPO0774 hypothetical protein
Similar to Yersinia enterocolitica high-pathogenicity island protein Irp3 TR:O54512 (EMBL:Y12527) (365 aa) fasta scores: E(): 3.6e-30, 33.7% id in 362 aa, and to Yersinia pestis YbtU protein ybtU TR:Q9Z3C6 (EMBL:AL031866) (365 aa) fasta scores: E(): 3.6e-30, 33.8% id in 364 aa
genbank 16121087 NP_404400.1 375 840606 841733
201668 hypothetical YPO0775 hypothetical protein
Similar to Corynebacterium diphtheriae DtxR/iron-regulated protein 2 Irp2 TR:Q46024 (EMBL:U02634) (369 aa) fasta scores: E(): 2.2e-06, 23.3% id in 339 aa. N-terminal region similar to N-terminus of Pseudomonas aeruginosa hypothetical protein PA4362 TR:AAG07750 (EMBL:AE004852) (352 aa) fasta scores: E(): 0.054, 27.8% id in 209 aa
genbank 16121088 NP_404401.1 358 841730 842806
201669 hypothetical YPO0776 putative siderophore biosysnthesis protein
Similar to N-terminus of Yersinia pestis yersiniabactin biogenesis protein Irp2 TR:Q9Z399 (EMBL:AL031866) (2041 aa) fasta scores: E(): 0, 31.1% id in 1659 aa, and to Pseudomonas aeruginosa pyochelin synthetase PchF TR:Q9RFM7 (EMBL:AF184622) (1809 aa) fasta scores: E(): 0, 34.1% id in 1957 aa. and to Vibrio anguillarum anguibactin biosynthesis protein AngR SW:ANGR_VIBAN (P19828) (1048 aa) fasta scores: E(): 0, 32.1% id in 844 aa. CDS contains a glutamine and threonine rich imperfect repeat region, residues 996 to 1065
genbank 16121089 NP_404402.1 1939 842803 848622
201670 hypothetical YPO0777 putative siderophore biosysnthesis protein
Similar to the C-terminus of Vibrio anguillarum anguibactin biosynthesis protein AngR SW:ANGR_VIBAN (P19828) (1048 aa) fasta scores: E(): 0, 40.7% id in 553 aa. N-terminus of the CDS is similar to an internal region of Yersinia pestis yersiniabactin biogenesis protein Irp2 TR:Q9Z399 (EMBL:AL031866) (2041 aa) fasta scores: E(): 0, 45.1% id in 439 aa
genbank 16121090 NP_404403.1 550 848635 850287
201671 hypothetical YPO0778 putative siderophore biosysnthesis protein
Similar to Yersinia pestis yersiniabactin biogenesis protein Irp2 TR:Q9Z399 (EMBL:AL031866) (2041 aa) fasta scores: E(): 0, 36.8% id in 2031 aa, and to C-terminus of Stigmatella aurantiaca myxothiazol biosynthetic protein MtaD TR:Q9RFK8 (EMBL:AF188287) (3291 aa) fasta scores: E(): 0, 32.0% id in 1435 aa
genbank 16121091 NP_404404.1 2201 850331 856936
201672 hypothetical YPO0779 transposase/IS protein
Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein, IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0, 47.4% id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0, 99.6% id in 260 aa.
genbank 16121092 NP_404405.1 260 856997 857779
201673 hypothetical YPO0780 transposase for insertion sequence IS100
Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27, 33.1% id in 329 aa. Identical to the previously sequenced Yersinia pestis, Yersinia pseudotuberculosis, and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0, 100.0% id in 340 aa
genbank 16121093 NP_404406.1 340 857776 858798
201674 hypothetical YPO0782 hypothetical protein
Poor database matches. Doubtful CDS
genbank 16121094 NP_404407.1 72 859268 859486
201675 thyA hypothetical YPO0783 thymidylate synthase
catalyzes the formation of dihydrofolate from 5,10-methylenetetrahydrofolate
genbank 16121095 NP_404408.1 264 859517 860311
201676 lgt hypothetical YPO0784 prolipoprotein diacylglyceryl transferase
transfers the N-acyl diglyceride moiety to the prostepctive N-terminalcysteine in prolipoprotein
genbank 16121096 NP_404409.1 290 860318 861190
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
201677 ptsP hypothetical YPO0785 phosphoenolpyruvate-protein phosphotransferase
Similar to Escherichia coli phosphoenolpyruvate-protein phosphotransferase PtsP SW:PT1P_ECOLI (P37177) (748 aa) fasta scores: E(): 0, 79.3% id in 747 aa, and to Vibrio cholerae phosphoenolpyruvate-protein phosphotransferase VC0672 TR:Q9KU52 (EMBL:AE004153) (748 aa) fasta scores: E(): 0, 51.2% id in 752 aa. Escherichia coli protein also possesses a putative sensory transduction domain and is possible transcriptional regulator.
genbank 16121097 NP_404410.1 748 861441 863687
201678 hypothetical YPO0786 dinucleoside polyphosphate hydrolase
Hydrolyzes diadenosine polyphosphate
genbank 16121098 NP_404411.1 175 863700 864227
201679 hypothetical YPO0787 hypothetical protein
doubtful CDS with no significant database hits
genbank 16121099 NP_404412.1 83 864253 864504
201680 hypothetical YPO0788 hypothetical protein
doubtful CDS with no significant database hits
genbank 16121100 NP_404413.1 63 864501 864692
201681 mutH hypothetical YPO0789 DNA mismatch repair protein
MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair
genbank 16121101 NP_404414.1 228 864925 865611
201682 tas hypothetical YPO0790 putative aldo/keto reductase-family protein
Similar to Escherichia coli putative aldo-keto reductase protein Tas SW:TAS_ECOLI (Q46933) (346 aa) fasta scores: E(): 0, 77.7% id in 346 aa, and to Vibrio cholerae oxidoreductase Tas, aldo/keto reductase family VC0667 TR:Q9KU57 (EMBL:AE004153) (352 aa) fasta scores: E(): 0, 66.9% id in 347 aa
genbank 16121102 NP_404415.1 346 865946 866986
201683 hypothetical YPO0791 hypothetical protein
no significant database hits. CDS DNA has a low G+C content, 40.61%
genbank 16121103 NP_404416.1 141 867363 867788
201684 hypothetical YPO0792 hypothetical protein
Similar to Escherichia coli hypothetical protein YgeD SW:YGED_ECOLI (P39196) (397 aa) fasta scores: E(): 0, 74.3% id in 397 aa, and to Chlamydia muridarum hypothetical protein TC0009 TR:Q9PLT6 (EMBL:AE002269) (559 aa) fasta scores: E(): 2.3e-13, 27.7% id in 404 aa
genbank 16121104 NP_404417.1 406 867955 869175
201685 aas hypothetical YPO0793 2-acyl-glycerophospho-ethanolamine acyltransferase
Similar to Escherichia coli bifunctional protein, 2-Acylglycerophosphoethanolamine [2-acyl-GPE] acyltransferase and acyl-acyl carrier protein [acyl-ACP] synthase activities, Aas SW:AAS_ECOLI (P31119) (719 aa) fasta scores: E(): 0, 70.8% id in 715 aa, and to Rickettsia prowazekii 2-acylglycerophosphoethanolamine acyltransferase RP620 TR:Q9ZCU1 (EMBL:AJ235272) (1152 aa) fasta scores: E(): 0, 38.4% id in 724 aa
genbank 16121105 NP_404418.1 718 869172 871328
201686 bisC hypothetical YPO0794 putative biotin sulfoxide reductas2
Similar to Rhodobacter sphaeroides biotin sulfoxide reductase BisC SW:BISC_RHOSH (P54934) (744 aa) fasta scores: E(): 0, 49.0% id in 725 aa, and to Mycobacterium tuberculosis possible biotin sulfoxide reductase BisC TR:O06817 (EMBL:Z95844) (766 aa) fasta scores: E(): 0, 42.7% id in 752 aa
genbank 16121106 NP_404419.1 753 871777 874038
201687 galR hypothetical YPO0795 galactose operon repressor
Similar to Escherichia coli galactose operon repressor GalR SW:GALR_ECOLI (P03024) (343 aa) fasta scores: E(): 0, 80.7% id in 332 aa, and to Vibrio cholerae LacI-family transcriptional regulator VC2337 TR:Q9KPM9 (EMBL:AE004303) (335 aa) fasta scores: E(): 0, 59.1% id in 330 aa
genbank 16121107 NP_404420.1 340 874348 875370
201688 lysA hypothetical YPO0796 diaminopimelate decarboxylase
Similar to Escherichia coli diaminopimelate decarboxylase LysA SW:DCDA_ECOLI (P00861) (420 aa) fasta scores: E(): 0, 77.3% id in 418 aa, and to Streptomyces coelicolor diaminopimelate decarboxylase LysA SW:DCDA_STRCO (Q9ZBH5) (440 aa) fasta scores: E(): 0, 65.7% id in 405 aa
genbank 16121108 NP_404421.1 420 875367 876629
201689 lysR hypothetical YPO0797 transcriptional activator protein LysR
Similar to Escherichia coli transcriptional activator protein LysR SW:LYSR_ECOLI (P03030) (311 aa) fasta scores: E(): 0, 67.9% id in 312 aa, and to Agrobacterium tumefaciens regulatory protein NocR SW:NOCR_AGRT5 (Q00678) (300 aa) fasta scores: E(): 4e-25, 32.2% id in 289 aa
genbank 16121109 NP_404422.1 313 876844 877785
201690 hypothetical YPO0798 putative sugar transport protein
Similar to Pseudomonas aeruginosa probable MFS transporter PA4355 TR:AAG07743 (EMBL:AE004851) (388 aa) fasta scores: E(): 0, 70.2% id in 376 aa, and to Streptomyces violaceus chloramphenicol resistance protein CmlV TR:Q56147 (EMBL:U09991) (436 aa) fasta scores: E(): 0, 41.9% id in 377 aa
genbank 16121110 NP_404423.1 386 877782 878942
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
201691 hypothetical YPO0799 LysR-family transcriptional regulatory protein
Similar to Vibrio cholerae LysR-family transcriptional regulator VCA1055 TR:Q9KKP7 (EMBL:AE004431) (307 aa) fasta scores: E(): 0, 38.7% id in 297 aa, and to Synechocystis sp. transcriptional regulator SLR1245 TR:P73778 (EMBL:D90909) (302 aa) fasta scores: E(): 2.2e-32, 34.1% id in 302 aa
genbank 16121111 NP_404424.1 302 879311 880219
201692 hypothetical YPO0800 hypothetical protein
Similar to Pseudomonas aeruginosa hypothetical protein PA0057 TR:AAG03447 (EMBL:AE004445) (295 aa) fasta scores: E(): 0, 57.9% id in 290 aa, and to Xylella fastidiosa hypothetical protein XF2283 TR:Q9PB61 (EMBL:AE004040) (317 aa) fasta scores: E(): 0, 53.8% id in 266 aa
genbank 16121112 NP_404425.1 295 880326 881213
201693 hypothetical YPO0801 hypothetical protein
Similar to Pseudomonas aeruginosa hypothetical protein PA0058 TR:AAG03448 (EMBL:AE004445) (234 aa) fasta scores: E(): 0, 54.1% id in 205 aa, and to Vibrio cholerae hypothetical protein VCA0901 TR:Q9KL47 (EMBL:AE004418) (209 aa) fasta scores: E(): 2.9e-19, 33.3% id in 207 aa
genbank 16121113 NP_404426.1 211 881326 881961
201694 cheD hypothetical YPO0802 putative methyl-accepting chemotaxis protein
Similar to Escherichia coli methyl-accepting chemotaxis protein I CheD SW:MCP1_ECOLI (P02942) (551 aa) fasta scores: E(): 0, 40.2% id in 537 aa, and to Enterobacter aerogenes methyl-accepting chemotaxis serine transducer Tse SW:MCPS_ENTAE (P21822) (557 aa) fasta scores: E(): 0, 40.5% id in 523 aa
genbank 16121114 NP_404427.1 547 881947 883590
201695 hypothetical YPO0803 hypothetical protein
no significant database hits
genbank 16121115 NP_404428.1 133 883793 884194
201696 hypothetical YPO0804 putative regulatory membrane protein
Similar to Vibrio cholerae toxin corregulated pilus biosynthesis protein TcpP SW:TCPP_VIBCH (P29485) (221 aa) fasta scores: E(): 1.5e-05, 28.7% id in 181 aa, N-terminus is similar to the N-terminus of Vibrio fischeri transmembrane transcriptional activator ToxR TR:Q56689 (EMBL:L29053) (316 aa) fasta scores: E(): 8.5e-05, 36.6% id in 101 aa
genbank 16121116 NP_404429.1 238 884191 884907
201697 hypothetical YPO0805 putative lipoprotein
Similar to Klebsiella pneumoniae pullulanase secretion protein PulS SW:PULS_KLEPN (P20440) (125 aa) fasta scores: E(): 0.0042, 28.9% id in 97 aa, and to enterohemorrhagic Escherichia coli (EHEC) O157:H7 large virulence plasmid (pO157) protein EtpO TR:O32577 (EMBL:Y09824) (133 aa) fasta scores: E(): 0.0045, 32.9% id in 79 aa
genbank 16121117 NP_404430.1 101 885191 885496
201698 hypothetical YPO0806 prepilin peptidase
Similar to Erwinia carotovora type 4 prepilin-like proteins leader peptide processing enzyme OutO SW:LEP4_ERWCA (P31712) (279 aa) fasta scores: E(): 0, 42.3% id in 265 aa, and to Aeromonas salmonicida type 4 prepilin-like proteins leader peptide processing enzyme TapD SW:LEP4_AERSA (O68964) (291 aa) fasta scores: E(): 0, 42.2% id in 277 aa
genbank 16121118 NP_404431.1 280 885548 886390
201699 hypothetical YPO0807 hypothetical protein
Poor database matches. Similar to Amsacta moorei entomopoxvirus protein AMV030 TR:AAG02736 (EMBL:AF250284) (144 aa) fasta scores: E(): 5.4, 22.9% id in 118 aa, and similar to the N-terminual region of Amsacta moorei entomopoxvirus protein AMV212 TR:AAG02918 (EMBL:AF250284) (284 aa) fasta scores: E(): 10, 29.1% id in 127 aa
genbank 16121119 NP_404432.1 153 886416 886877
201700 hypothetical YPO0808 general secretion pathway protein L
Similar to Aeromonas hydrophila general secretion pathway protein L ExeL SW:GSPL_AERHY (P45789) (389 aa) fasta scores: E(): 1.8e-20, 23.3% id in 347 aa, and to Erwinia chrysanthemi general secretion pathway protein L OutL SW:GSPL_ERWCH (P31707) (399 aa) fasta scores: E(): 1.2e-16, 20.5% id in 396 aa
genbank 16121120 NP_404433.1 389 886874 888043
201701 hypothetical YPO0809 general secretion pathway protein K
Similar to Erwinia carotovora general secretion pathway protein K OutK SW:GSPK_ERWCA (P31706) (328 aa) fasta scores: E(): 0.00012, 22.6% id in 327 aa, and to Klebsiella pneumoniae general secretion pathway protein K PulK SW:GSPK_KLEPN (P15750) (326 aa) fasta scores: E(): 0.0012, 25.4% id in 323 aa
genbank 16121121 NP_404434.1 318 888048 889004
201702 hypothetical YPO0810 general secretion pathway protein J
Similar to Aeromonas hydrophila general secretion pathway protein J ExeJ SW:GSPJ_AERHY (P31739) (207 aa) fasta scores: E(): 1.1e-14, 30.3% id in 198 aa, and to enterohemorrhagic Escherichia coli (EHEC) O157:H7 large virulence plasmid (pO157) protein EtpJ TR:O32572 (EMBL:Y09824) (199 aa) fasta scores: E(): 2.1e-16, 31.9% id in 191 aa
genbank 16121122 NP_404435.1 198 889013 889609
201703 hypothetical YPO0811 general secretion pathway protein I
Similar to Aeromonas hydrophila general secretion pathway protein I ExeI SW:GSPI_AERHY (P31737) (119 aa) fasta scores: E(): 4.3e-15, 41.2% id in 102 aa, and to Erwinia chrysanthemi general secretion pathway protein I precursor OutI SW:GSPI_ERWCH (P24688) (125 aa) fasta scores: E(): 8.1e-13, 34.9% id in 109 aa
genbank 16121123 NP_404436.1 114 889602 889946
201704 hypothetical YPO0812 general secretion pathway protein H
Similar to Erwinia chrysanthemi general secretion pathway protein H OutH SW:GSPH_ERWCH (P24687) (181 aa) fasta scores: E(): 0.13, 20.2% id in 178 aa, and to enterohemorrhagic Escherichia coli (EHEC) O157:H7 large virulence plasmid (pO157) protein EtpH TR:O32570 (EMBL:Y09824) (184 aa) fasta scores: E(): 0.084, 20.8% id in 183 aa
genbank 16121124 NP_404437.1 180 889984 890526
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
201705 hypothetical YPO0813 general secretion pathway protein G
Similar to Erwinia carotovora general secretion pathway protein G OutG SW:GSPG_ERWCA (P31586) (156 aa) fasta scores: E(): 0, 69.9% id in 133 aa, and to Erwinia chrysanthemi general secretion pathway protein G OutG SW:GSPG_ERWCH (P31585) (153 aa) fasta scores: E(): 0, 67.9% id in 134 aa
genbank 16121125 NP_404438.1 145 890531 890968
201706 hypothetical YPO0815 general secretion pathway protein E
Similar to Erwinia carotovora general secretion pathway protein E OutE SW:GSPE_ERWCA (P31703) (498 aa) fasta scores: E(): 0, 56.0% id in 502 aa, and to enterohemorrhagic Escherichia coli (EHEC) O157:H7 large virulence plasmid (pO157) protein EtpE TR:O82884 (EMBL:AB011549) (501 aa) fasta scores: E(): 0, 56.6% id in 484 aa
genbank 16121126 NP_404439.1 503 892176 893687
201707 hypothetical YPO0816 general secretion pathway protein D
Similar to Klebsiella pneumoniae general secretion pathway protein D GspD SW:GSPD_KLEPN (P15644) (660 aa) fasta scores: E(): 0, 48.9% id in 640 aa, and to Aeromonas salmonicida general secretion pathway protein D ExeD SW:GSPD_AERSA (P45778) (678 aa) fasta scores: E(): 0, 47.1% id in 633 aa. The CDS contains an internal deletion relative to other orthologues around codon 380. The effect on function is unknown.
genbank 16121127 NP_404440.1 640 893684 895606
201708 hypothetical YPO0817 general secretion pathway protein C
Similar to N-terminal regions of Aeromonas hydrophila general secretion pathway protein C ExeC SW:GSPC_AERHY (P45790) (290 aa) fasta scores: E(): 0.013, 24.3% id in 144 aa, and to Aeromonas salmonicida general secretion pathway protein C ExeC SW:GSPC_AERSA (P45772) (290 aa) fasta scores: E(): 0.12, 23.6% id in 144 aa. CDS is truncated relative orthologues, effect on function unknown.
genbank 16121128 NP_404441.1 167 895687 896190
201709 hypothetical YPO0818 hypothetical protein
Poor database hits. Weakly similar to internal region of Salmonella typhimurium putative transcriptional regulator MarT TR:Q9Z623 (EMBL:AF106566) (285 aa) fasta scores: E(): 4, 29.7% id in 74 aa
genbank 16121129 NP_404442.1 138 896258 896674
201710 hypothetical YPO0819 putative carbonic anhydrase
Similar to Chlamydomonas reinhardtii beta-carbonic anhydrase CA1 TR:P93108 (EMBL:U80804) (267 aa) fasta scores: E(): 1.8e-17, 39.0% id in 223 aa, and to Salmonella typhimurium putative carbonic anhydrase Mig-5 TR:O30898 (EMBL:AF020806) (246 aa) fasta scores: E(): 0, 60.9% id in 243 aa
genbank 16121130 NP_404443.1 251 897417 898172
201711 hypothetical YPO0820 hypothetical protein
no significant database hits
genbank 16121131 NP_404444.1 102 898548 898856
201712 hypothetical YPO0821 hypothetical protein
no significant database hits
genbank 16121132 NP_404445.1 64 899243 899437
201713 hypothetical YPO0822 hypothetical protein
Poor database matches to the full length CDS. Similar to enterohemorrhagic Escherichia coli O157:H7 outer membrane protein OmpG TR:AAG56483 (EMBL:AE005375) (301 aa) fasta scores: E(): 6.3, 20.6% id in 325 aa
genbank 16121133 NP_404446.1 316 899459 900409
201714 hypothetical YPO0823 hypothetical protein
Similar to internal regions of Serratia marcescens serine protease homologue SSP-H2 TR:Q54484 (EMBL:D78380) (1034 aa) fasta scores: E(): 2e-10, 21.9% id in 725 aa, and to Pseudomonas fluorescens probable serine protease PrtB TR:Q9KJ18 (EMBL:AF216702) (1036 aa) fasta scores: E(): 1.2e-13, 23.1% id in 654 aa
genbank 16121134 NP_404447.1 728 900524 902710
201715 hypothetical YPO0824 hypothetical protein
C-terminus of CDS is similar to Bacteroides thetaiotaomicron lyase 2 TR:Q45773 (EMBL:L42367) (645 aa) fasta scores: E(): 0, 35.9% id in 604 aa, and internal region of Streptomyces griseus hyaluronidase Hya TR:Q9WXL3 (EMBL:AB028210) (721 aa) fasta scores: E(): 7.2e-06, 25.3% id in 617 aa
genbank 16121135 NP_404448.1 1037 902780 905893
201716 hypothetical YPO0825 transposase/IS protein
Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein, IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0, 47.4% id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0, 99.6% id in 260 aa.
genbank 16121136 NP_404449.1 260 906238 907020
201717 hypothetical YPO0826 transposase for insertion sequence IS100
Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27, 33.1% id in 329 aa. Identical to the previously sequenced Yersinia pestis, Yersinia pseudotuberculosis, and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0, 100.0% id in 340 aa
genbank 16121137 NP_404450.1 340 907017 908039
201718 hypothetical YPO0829 putative sulfatase
Similar to Prevotella sp RS2 mucin-desulfating sulfatase MdsA TR:Q9L5W0 (EMBL:AF248951) (517 aa) fasta scores: E(): 2e-12, 25.9% id in 486 aa, and to Homo sapiens iduronate 2-sulfatase precursor SW:IDS_HUMAN (P22304) (550 aa) fasta scores: E(): 9.3e-11, 26.8% id in 463 aa
genbank 16121138 NP_404451.1 517 908982 910535
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
201719 hypothetical YPO0831 DeoR-family regulatory protein
Similar to Escherichia coli galactitol utilization operon repressor GatR SW:GATR_ECOLI (P36930) (259 aa) fasta scores: E(): 2.9e-27, 39.0% id in 254 aa, and to Escherichia coli putative aga operon transcriptional repressor AgaR SW:AGAR_ECOLI (P42902) (269 aa) fasta scores: E(): 0, 46.7% id in 255 aa
genbank 16121139 NP_404452.1 258 911375 912151
201720 agaZ hypothetical YPO0832 putative tagatose 6-phosphate kinase
Similar to Escherichia coli putative tagatose 6-phosphate kinase AgaZ SW:AGAZ_ECOLI (P42903) (426 aa) fasta scores: E(): 0, 63.6% id in 423 aa, and to Streptomyces coelicolor tagatose 6-phosphate kinase AgaZ TR:O50522 (EMBL:AL009204) (435 aa) fasta scores: E(): 0, 57.2% id in 418 aa
genbank 16121140 NP_404453.1 432 912201 913499
201721 hypothetical YPO0833 putative phosphosugar isomerase
Similar to Drosophila melanogaster glucosamine--fructose-6-phosphate aminotransferase GfaT TR:Q9Y093 (EMBL:Y18628) (694 aa) fasta scores: E(): 0.00036, 22.3% id in 363 aa, and to Escherichia coli putative tagatose-6-phosphate ketose/aldose isomerase AgaS SW:AGAS_ECOLI (P42907) (384 aa) fasta scores: E(): 0, 48.0% id in 373 aa
genbank 16121141 NP_404454.1 388 913496 914662
201722 manX hypothetical YPO0834 putative PTS transport protein
Similar to Vibrio furnissii phosphenolpyruvate-dependent sugar phosphotransferase system (PTS) permease for mannose subunit IIIMan C-terminal domain, ManX TR:P96162 (EMBL:U65015) (157 aa) fasta scores: E(): 6.8e-31, 51.6% id in 159 aa, and to Escherichia coli PTS system, N-acetylgalactosamine-specific IIB component 2 AgaV SW:PTPV_ECOLI (P42904) (157 aa) fasta scores: E(): 8.1e-29, 48.1% id in 158 aa
genbank 16121142 NP_404455.1 165 914680 915177
201723 hypothetical YPO0835 putative PTS permease protein
Similar to Vibrio furnissii phosphenolpyruvate-dependent sugar phosphotransferase system (PTS) permease for mannose subunit IIPMman, ManY TR:P96163 (EMBL:U65015) (258 aa) fasta scores: E(): 0, 41.2% id in 262 aa, and to Escherichia coli PTS dependent N-acetyl-galactosamine-IIC component AgaW TR:Q9KIQ3 (EMBL:AF228498) (259 aa) fasta scores: E(): 0, 41.2% id in 262 aa
genbank 16121143 NP_404456.1 262 915224 916012
201724 hypothetical YPO0836 putative PTS permease protein
Similar to Vibrio furnissii phosphenolpyruvate-dependent sugar phosphotransferase system (PTS) permease for mannose subunit IIBMan ManZ TR:P96164 (EMBL:U65015) (293 aa) fasta scores: E(): 0, 43.8% id in 272 aa, and to Escherichia coli PTS dependent N-acetyl-galactosamine- and galactosamine IIA component AgaE TR:Q9KIQ2 (EMBL:AF228498) (292 aa) fasta scores: E(): 0, 41.7% id in 266 aa
genbank 16121144 NP_404457.1 296 916002 916892
201725 hypothetical YPO0837 putative PTS permease protein
Similar to Vibrio furnissii phosphenolpyruvate-dependent sugar phosphotransferase system (PTS) permease for mannose subunit IIIMan N-terminal domain, ManW TR:P96165 (EMBL:U65015) (146 aa) fasta scores: E(): 3.3e-18, 37.7% id in 146 aa, and to Escherichia coli PTS dependent N-acetyl-galactosamine- and galactosamine IIA component AgaF TR:Q9KIQ1 (EMBL:AF228498) (144 aa) fasta scores: E(): 1.4e-13, 37.4% id in 131 aa
genbank 16121145 NP_404458.1 146 916978 917418
201726 hypothetical YPO0838 putative acetylglucosamine-6-phosphate deacetylase
Similar to Vibrio furnissii N-acetylglucosamine-6-phosphate deacetylase ManD SW:NAGA_VIBFU (P96166) (399 aa) fasta scores: E(): 0, 43.4% id in 373 aa, and to Escherichia coli N-acetyl-galactosamine-6-phosphate deacetylase AgaA TR:Q9KIQ0 (EMBL:AF228498) (384 aa) fasta scores: E(): 0, 39.7% id in 378 aa
genbank 16121146 NP_404459.1 388 917421 918587
201727 kduD2 hypothetical YPO0839 2-deoxy-D-gluconate 3-dehydrogenase
Similar to Escherichia coli 2-deoxy-D-gluconate 3-dehydrogenase KduD SW:KDUD_ECOLI (P37769) (253 aa) fasta scores: E(): 0, 68.1% id in 251 aa, and to Erwinia chrysanthemi 2-deoxy-D-gluconate 3-dehydrogenase KduD SW:KDUD_ERWCH (Q05528) (253 aa) fasta scores: E(): 0, 65.7% id in 251 aa. Similar to YPO1724 (68.1% identity in 251 aa overlap)
genbank 16121147 NP_404460.1 251 918783 919538
201728 hypothetical YPO0840 hypothetical protein
Similar to Bacillus halodurans conserved hypothetical protein BH0485 TR:Q9KFJ4 (EMBL:AP001508) (365 aa) fasta scores: E(): 1.9e-08, 23.9% id in 356 aa, and to Bacillus subtilis conserved hypothetical protein YteR TR:O34559 (EMBL:AF008220) (373 aa) fasta scores: E(): 5.3e-07, 25.3% id in 332 aa
genbank 16121148 NP_404461.1 352 919554 920612
201729 hypothetical YPO0841 putative regulatory protein
Similar to Bacteroides thetaiotaomicron chondro-6-sulfatase regulatory protein ChuR SW:CHUR_BACTN (Q02550) (401 aa) fasta scores: E(): 0, 39.4% id in 381 aa, and to Salmonella typhimurium LT2 hypothetical protein STMD1.23 TR:Q9L6N0 (EMBL:AF233324) (431 aa) fasta scores: E(): 0, 46.2% id in 396 aa
genbank 16121149 NP_404462.1 408 920856 922082
201730 hypothetical YPO0842 putative sulfatase
Similar to Hemicentrotus pulcherrimus arylsulfatase SW:ARS_HEMPU (P14000) (551 aa) fasta scores: E(): 3e-19, 28.5% id in 403 aa, and to Escherichia coli putative sulfatase YdeN SW:YDEN_ECOLI (P77318) (560 aa) fasta scores: E(): 0, 39.6% id in 508 aa
genbank 16121150 NP_404463.1 535 922103 923710
201731 hypothetical YPO0843 hypothetical protein
Poor database hits. Weakly similar to internal region of Streptomyces coelicolor hypothetical protein SCF91.24 TR:Q9RJA0 (EMBL:AL132973) (631 aa) fasta scores: E(): 3.8e-24, 32.1% id in 361 aa
genbank 16121151 NP_404464.1 495 923833 925320
201732 agaY hypothetical YPO0844 tagatose 1,6-diphosphate aldolase
catalyzes the formation of dihydroxyacetone phosphate and glyceraldehyde phospthate from tagatose 1.6-bisphosphate
genbank 16121152 NP_404465.1 284 925429 926283
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
201733 hypothetical YPO0845 ThiJ/PfpI-family thiamine biogenesis protein
Similar to Homo sapiens oncogenic protein DJ-1 TR:Q99497 (EMBL:D61380) (189 aa) fasta scores: E(): 2.2e-12, 32.7% id in 171 aa, and to Borrelia burgdorferi putative 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein ThiJ BB0621 TR:O51566 (EMBL:AE001163) (184 aa) fasta scores: E(): 8.6e-17, 35.0% id in 160 aa
genbank 16121153 NP_404466.1 192 926307 926885


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