R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
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>gi|6831602|sp|Q9XHE4|R37A_GOSHI 60S RIBOSOMAL PROTEIN L37A
>gi|4741896|gb|AAD28753.1|AF127042_1 (AF127042) 60S ribosomal
protein L37a [Gossypium hirsutum]
Length = 92
Frame 2 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | | 92
0 20 40 60 80
Plus Strand HSPs:
Score = 469 (165.1 bits), Expect = 1.5e-43, P = 1.5e-43
Identities = 90/92 (97%), Positives = 91/92 (98%), Frame = +2
Query: 32 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 211
MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSK+FCEFCGKYAVKRKAVGIWGCK C
Sbjct: 1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKAC 60
Query: 212 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 307
GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92
>gi|6831607|sp|Q9ZRS8|R37A_PSEMZ 60S RIBOSOMAL PROTEIN L37A
>gi|4090257|emb|CAA10493.1| (AJ131732) ribosomal protein L37A
[Pseudotsuga menziesii]
Length = 92
Frame 2 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | | | 92
0 20 40 60 80
Plus Strand HSPs:
Score = 467 (164.4 bits), Expect = 2.4e-43, P = 2.4e-43
Identities = 89/91 (97%), Positives = 90/91 (98%), Frame = +2
Query: 32 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 211
MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGK+AVKRKAVGIWGCKDC
Sbjct: 1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKFAVKRKAVGIWGCKDC 60
Query: 212 GKVKAGGAYTLNTASAVTVRSTIRRLREQTE 304
GKVKAGGAYTLNT SAVTVRSTIRRLREQTE
Sbjct: 61 GKVKAGGAYTLNTPSAVTVRSTIRRLREQTE 91
>gi|6016699|gb|AAF01526.1|AC009991_22 (AC009991) putative 60S ribosomal protein
L37a [Arabidopsis thaliana]
Length = 92
Frame 2 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | | 92
0 20 40 60 80
Plus Strand HSPs:
Score = 457 (160.9 bits), Expect = 2.8e-42, P = 2.8e-42
Identities = 86/92 (93%), Positives = 90/92 (97%), Frame = +2
Query: 32 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 211
MTKRTKKA IVGKYGTRYGASLRKQIKKMEVSQH+K+FCEFCGKY+VKRK VGIWGCKDC
Sbjct: 1 MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60
Query: 212 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 307
GKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92
>gi|1173045|sp|P43209|R37A_BRARA 60S RIBOSOMAL PROTEIN L37A
>gi|421866|pir||S34661 ribosomal protein L37a, cytosolic - turnip
>gi|347062|gb|AAA51421.1| (L21897) ribosomal protein [Brassica
rapa] >gi|395077|emb|CAA80864.1| (Z24739) ribosomal protein L37a
[Brassica rapa]
Length = 93
Frame 2 hits (HSPs): _________________________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | 93
0 20 40 60 80
__________________
Annotated Domains:
DOMO DM03458: RATRIBOSOMALPROTEINL37A 1..90
Entrez Zinc finger region: C4-TYPE. 39..60
PFAM Ribosomal_L37ae: Ribosomal L37ae protein 1..92
PRODOM PD006591: R37A(10) 2..90
__________________
Plus Strand HSPs:
Score = 441 (155.2 bits), Expect = 1.4e-40, P = 1.4e-40
Identities = 84/92 (91%), Positives = 87/92 (94%), Frame = +2
Query: 32 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 211
M KRTKK GIVGKYGTRYGAS+RKQIKKMEVSQHSK+FCEFCGKY VKRKAVGIWGCKDC
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60
Query: 212 GKVKAGGAYTLNTASAVTVRS-TIRRLREQTE 304
GKVKAGGAYT+NTASAVTVRS TIRRLREQ E
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSHTIRRLREQIE 92
>gi|11358898|pir||T49219 translation initiation factor eIF-4 gamma homolog
F27H5.30 [similarity] - Arabidopsis thaliana
>gi|7576200|emb|CAB87861.1| (AL163852) protein synthesis initiation
factor-like [Arabidopsis thaliana]
Length = 1606
Frame 2 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | 1606
0 500 1000 1500
Plus Strand HSPs:
Score = 391 (137.6 bits), Expect = 8.9e-34, P = 8.9e-34
Identities = 73/86 (84%), Positives = 79/86 (91%), Frame = +2
Query: 47 KKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDCGKVKA 226
+ +G + GTRYGAS+RKQIKKMEVSQHSK+FCEFCGKY VKRKAVGIWGCKDCGKVKA
Sbjct: 1520 RSSGEENEEGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKA 1579
Query: 227 GGAYTLNTASAVTVRSTIRRLREQTE 304
GGAYT+NTASAVTVRSTIRRLREQ E
Sbjct: 1580 GGAYTMNTASAVTVRSTIRRLREQIE 1605
>gi|6093889|sp|O61462|R37A_CRYST 60S RIBOSOMAL PROTEIN L37A
>gi|3098458|gb|AAC15655.1| (AF040712) 60S ribosomal protein L37A
[Cryptochiton stelleri]
Length = 92
Frame 2 hits (HSPs): __________________________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | 92
0 20 40 60 80
__________________
Annotated Domains:
Entrez Zinc finger region: C4-TYPE. 39..60
PFAM Ribosomal_L37ae: Ribosomal L37ae protein 1..91
PRODOM PD006591: R37A(10) 2..90
__________________
Plus Strand HSPs:
Score = 363 (127.8 bits), Expect = 2.6e-32, P = 2.6e-32
Identities = 67/92 (72%), Positives = 78/92 (84%), Frame = +2
Query: 32 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 211
M KRTKK GIVGKYGTRYGASLRK +KKME++QHSK+ C+FCGK A+KR+AVGIWGCK C
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKTVKKMEITQHSKYTCQFCGKDAMKRQAVGIWGCKSC 60
Query: 212 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 307
KV AGGA+ +T +AVTVRS +RRLRE ES
Sbjct: 61 RKVVAGGAWVYSTMAAVTVRSAVRRLREMKES 92
>gi|7441206|pir||JE0321 ribosomal protein, Ddl37a - slime mold (Dictyostelium
discoideum)
Length = 91
Frame 2 hits (HSPs): ________________________________________________
__________________________________________________
Database sequence: | | | | | | 91
0 20 40 60 80
Plus Strand HSPs:
Score = 341 (120.0 bits), Expect = 5.5e-30, P = 5.5e-30
Identities = 62/88 (70%), Positives = 73/88 (82%), Frame = +2
Query: 32 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 211
M KRTKK G+VGKYGTRYGASLRKQ+KKME++QH + C FCGK AV+R +VGIW C C
Sbjct: 1 MAKRTKKVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRSSVGIWKCNGC 60
Query: 212 GKVKAGGAYTLNTASAVTVRSTIRRLRE 295
KV AGGA+T++TA+ TVRSTIRRLRE
Sbjct: 61 RKVLAGGAWTMSTAAGATVRSTIRRLRE 88
>gi|400996|sp|P32046|R37A_CHICK 60S RIBOSOMAL PROTEIN L37A
>gi|283916|pir||S24170 ribosomal protein L37a - chicken
>gi|222866|dbj|BAA03209.1| (D14167) ribosomal protein L37a [Gallus
gallus]
Length = 92
Frame 2 hits (HSPs): ________________________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | 92
0 20 40 60 80
__________________
Annotated Domains:
Entrez Zinc finger region: C4-TYPE. 39..60
PFAM Ribosomal_L37ae: Ribosomal L37ae protein 1..91
PRODOM PD006591: R37A(10) 2..89
__________________
Plus Strand HSPs:
Score = 339 (119.3 bits), Expect = 8.9e-30, P = 8.9e-30
Identities = 63/88 (71%), Positives = 72/88 (81%), Frame = +2
Query: 32 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 211
M KRTKK GIVGKYGTRYGASLRK +KK+E+SQH+K+ C FCGK +KRKAVGIW C C
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSC 60
Query: 212 GKVKAGGAYTLNTASAVTVRSTIRRLRE 295
K AGGA+T NT SAVTV+S IRRL+E
Sbjct: 61 MKTVAGGAWTYNTTSAVTVKSAIRRLKE 88
>gi|7509977|pir||T26996 hypothetical protein Y48B6A.2 - Caenorhabditis elegans
>gi|5824797|emb|CAB54440.1| (AL110490) predicted using
Genefinder~contains similarity to Pfam domain: PF01780 (Ribosomal
L37ae protein family), Score=200.8, E-value=7e-57, N=1~cDNA EST
yk108g2.3 comes from this gene; cDNA EST yk108g2.5 comes from this
gene~cDNA EST yk166b9.3 come>
Length = 91
Frame 2 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | | 91
0 20 40 60 80
Plus Strand HSPs:
Score = 339 (119.3 bits), Expect = 8.9e-30, P = 8.9e-30
Identities = 64/91 (70%), Positives = 71/91 (78%), Frame = +2
Query: 32 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 211
M KRTKK GIVGKYGTRYGASLRK KK+EV+QHS++ C FCGK A+KRKA GIW C C
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKC 60
Query: 212 GKVKAGGAYTLNTASAVTVRSTIRRLREQTE 304
KV AGGAY T +A TVRSTIRRLR+ E
Sbjct: 61 HKVVAGGAYVYGTVTAATVRSTIRRLRDLKE 91
>gi|4506643 ref|NP_000989.1| ribosomal protein L37a [Homo sapiens] >gi|6677785
ref|NP_033110.1| ribosomal protein L37a [Mus musculus] >gi|11430428
ref|XP_002637.1| ribosomal protein L37a [Homo sapiens]
>gi|132945|sp|P12751|R37A_HUMAN 60S RIBOSOMAL PROTEIN L37A
>gi|71373|pir||R5RT37 ribosomal protein L37a, cytosolic [validated]
- rat >gi|478320|pir||JN0875 ribosomal protein L37a - human
>gi|631760|pir||S42109 ribosomal protein L37a, cytosolic - mouse
>gi|36134|emb|CAA47244.1| (X66699) ribosomal protein L37a [Homo
sapiens] >gi|57123|emb|CAA32232.1| (X14069) ribosomal protein L37a
(AA 1 - 92) [Rattus rattus] >gi|292439|gb|AAA60280.1| (L06499)
ribosomal protein L37a [Homo sapiens] >gi|312414|emb|CAA51758.1|
(X73331) ribosomal protein L37a [Mus musculus]
>gi|12653563|gb|AAH00555.1|AAH00555 (BC000555) ribosomal protein
L37a [Homo sapiens]
Length = 92
Frame 2 hits (HSPs): ________________________________________________
__________________________________________________
Database sequence: | | | | | | 92
0 20 40 60 80
Plus Strand HSPs:
Score = 336 (118.3 bits), Expect = 1.9e-29, P = 1.9e-29
Identities = 62/88 (70%), Positives = 72/88 (81%), Frame = +2
Query: 32 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 211
M KRTKK GIVGKYGTRYGASLRK +KK+E+SQH+K+ C FCGK +KR+AVGIW C C
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60
Query: 212 GKVKAGGAYTLNTASAVTVRSTIRRLRE 295
K AGGA+T NT SAVTV+S IRRL+E
Sbjct: 61 MKTVAGGAWTYNTTSAVTVKSAIRRLKE 88
>gi|6093890|sp|O61598|R37A_OSTOS 60S RIBOSOMAL PROTEIN L37A
>gi|2996185|gb|AAC08431.1| (AF052737) 60S ribosomal protein
[Ostertagia ostertagi]
Length = 91
Frame 2 hits (HSPs): __________________________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | 91
0 20 40 60 80
__________________
Annotated Domains:
Entrez Zinc finger region: C4-TYPE. 39..60
PFAM Ribosomal_L37ae: Ribosomal L37ae protein 1..90
PRODOM PD006591: R37A(10) 2..89
__________________
Plus Strand HSPs:
Score = 333 (117.2 bits), Expect = 3.9e-29, P = 3.9e-29
Identities = 61/91 (67%), Positives = 71/91 (78%), Frame = +2
Query: 32 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 211
M KRTKK GIVGKYGTRYGASLRK +KKME++QHS++ C FCGK A++R AVGIW C C
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKMEITQHSRYTCPFCGKDAMRRGAVGIWNCSKC 60
Query: 212 GKVKAGGAYTLNTASAVTVRSTIRRLREQTE 304
K AGGAY T +A TVRST+RRLR+ E
Sbjct: 61 KKTVAGGAYVYGTVAAATVRSTVRRLRDLKE 91
>gi|6322554 ref|NP_012628.1| Ribosomal protein L43B; Rpl43bp [Saccharomyces
cerevisiae] >gi|6325300 ref|NP_015368.1| Ribosomal protein L43A;
Rpl43ap [Saccharomyces cerevisiae] >gi|1346945|sp|P49631|RL43_YEAST
60S RIBOSOMAL PROTEIN L43 (L37A) (YL35) >gi|1084777|pir||S54068
ribosomal protein L37a.e, cytosolic - yeast (Saccharomyces
cerevisiae) >gi|805027|emb|CAA89164.1| (Z49219) unknown
[Saccharomyces cerevisiae] >gi|1314115|emb|CAA94991.1| (Z71255)
unknown [Saccharomyces cerevisiae] >gi|1370300|emb|CAA97993.1|
(Z73616) 10 kDa protein of 60S ribosomal subunit [Saccharomyces
cerevisiae] >gi|2131104|emb|CAA89623.1| (Z49594) ORF YJR094w-a
[Saccharomyces cerevisiae] >gi|2131105|emb|CAA89625.1| (Z49595) ORF
YJR094w-a [Saccharomyces cerevisiae]
Length = 92
Frame 2 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | | 92
0 20 40 60 80
Plus Strand HSPs:
Score = 331 (116.5 bits), Expect = 6.3e-29, P = 6.3e-29
Identities = 60/92 (65%), Positives = 72/92 (78%), Frame = +2
Query: 32 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 211
M KRTKK GI GKYG RYG+SLR+Q+KK+E+ QH+++ C FCGK VKR A GIW C C
Sbjct: 1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCC 60
Query: 212 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 307
K AGGAYT++TA+A TVRSTIRRLRE E+
Sbjct: 61 KKTVAGGAYTVSTAAAATVRSTIRRLREMVEA 92
>gi|6093892|sp|O17307|R37A_SCHMA 60S RIBOSOMAL PROTEIN L37A
>gi|2565332|gb|AAB81969.1| (AF025539) ribosomal protein smL37a
[Schistosoma mansoni]
Length = 91
Frame 2 hits (HSPs): __________________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 91
0 20 40 60 80
__________________
Annotated Domains:
Entrez Zinc finger region: C4-TYPE. 38..59
PFAM Ribosomal_L37ae: Ribosomal L37ae protein 1..91
__________________
Plus Strand HSPs:
Score = 328 (115.5 bits), Expect = 1.3e-28, P = 1.3e-28
Identities = 61/90 (67%), Positives = 72/90 (80%), Frame = +2
Query: 38 KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDCGK 217
KRTKK GIVGKYG RYGASLRK IKK+E+SQH+K+ C FCGK ++KRKA GIW CK C K
Sbjct: 2 KRTKKVGIVGKYGVRYGASLRKTIKKIEISQHAKYNCNFCGKDSLKRKAAGIWECKACKK 61
Query: 218 VKAGGAYTLNTASAVTVRSTIRRLREQTES 307
V AGGAY +T +A T+R+ IRRLR+ ES
Sbjct: 62 VVAGGAYVCSTTAATTIRAAIRRLRDAHES 91
>gi|7296944|gb|AAF52217.1| (AE003608) CG5827 gene product [Drosophila
melanogaster]
Length = 92
Frame 2 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | | | 92
0 20 40 60 80
Plus Strand HSPs:
Score = 326 (114.8 bits), Expect = 2.1e-28, P = 2.1e-28
Identities = 59/91 (64%), Positives = 71/91 (78%), Frame = +2
Query: 32 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 211
M KRTKK GIVGKYGTRYGASLRK +KKME++QHSK+ C FCGK ++KR VGIW CK C
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKMEITQHSKYTCSFCGKDSMKRAVVGIWSCKRC 60
Query: 212 GKVKAGGAYTLNTASAVTVRSTIRRLREQTE 304
+ AGGA+ +T +A +VRS +RRLRE E
Sbjct: 61 KRTVAGGAWVYSTTAAASVRSAVRRLRETKE 91
>gi|7530129|emb|CAB86710.1| (AL163505) 60S ribosomal protein L37a [Leishmania
major]
Length = 92
Frame 2 hits (HSPs): ________________________________________________
__________________________________________________
Database sequence: | | | | | | 92
0 20 40 60 80
Plus Strand HSPs:
Score = 324 (114.1 bits), Expect = 3.5e-28, P = 3.5e-28
Identities = 59/88 (67%), Positives = 71/88 (80%), Frame = +2
Query: 32 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 211
M KRT K G++G+YGTRYGA+ RK+ KK+EVSQH+K FC FCGK+A +RKAVGIW C C
Sbjct: 1 MAKRTVKMGVMGRYGTRYGANPRKRAKKLEVSQHAKHFCSFCGKFAFRRKAVGIWRCDGC 60
Query: 212 GKVKAGGAYTLNTASAVTVRSTIRRLRE 295
K AGGAYTL+T + TVRST+RRLRE
Sbjct: 61 SKTVAGGAYTLSTPNNSTVRSTVRRLRE 88
>gi|6831626|sp|O94686|RL43_SCHPO 60S RIBOSOMAL PROTEIN L43 (L37)
>gi|7490041|pir||T40691 60s ribosomal protein l43 - fission yeast
(Schizosaccharomyces pombe) >gi|4455775|emb|CAB36864.1| (AL035536)
60s ribosomal protein L43/L37a-2 [Schizosaccharomyces pombe]
Length = 94
Frame 2 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | | | 94
0 20 40 60 80
Plus Strand HSPs:
Score = 314 (110.5 bits), Expect = 4.0e-27, P = 4.0e-27
Identities = 58/93 (62%), Positives = 70/93 (75%), Frame = +2
Query: 32 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGC--K 205
MTKRTKK G+ GKYG RYGASLR+ ++K+EV QHS++ C FCG+ VKR A GIW C K
Sbjct: 1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGK 60
Query: 206 DCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 304
C K AGGA+T+ TA+A + RSTIRRLRE E
Sbjct: 61 GCSKTLAGGAWTVTTAAATSARSTIRRLREMVE 93
>gi|9716244|emb|CAC01519.1| (AL391034) 60s ribosomal protein L37a/L43A
[Schizosaccharomyces pombe]
Length = 94
Frame 2 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | | | 94
0 20 40 60 80
Plus Strand HSPs:
Score = 314 (110.5 bits), Expect = 4.0e-27, P = 4.0e-27
Identities = 59/93 (63%), Positives = 71/93 (76%), Frame = +2
Query: 32 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGC--K 205
MTKRTKK G+ GKYG RYGASLR+ ++K+EV QHS++ C FCG+ VKR A GIW C K
Sbjct: 1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGK 60
Query: 206 DCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 304
C KV AGGA+T+ TA+A + RSTIRRLRE E
Sbjct: 61 GCKKVLAGGAWTVTTAAATSARSTIRRLREMVE 93
>gi|6831603|sp|Q9Y0H7|R37A_MYXGL 60S RIBOSOMAL PROTEIN L37A
>gi|5007072|gb|AAD37803.1|AF152471_1 (AF152471) ribosomal protein
L37a [Myxine glutinosa]
Length = 85
Frame 2 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | | | 85
0 20 40 60 80
Plus Strand HSPs:
Score = 310 (109.1 bits), Expect = 1.1e-26, P = 1.1e-26
Identities = 57/83 (68%), Positives = 68/83 (81%), Frame = +2
Query: 56 GIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGA 235
GIVGKYGTRYGASLRK +KK+E++QHSK+ C FCGK +KR+AVGIW C C K AGGA
Sbjct: 2 GIVGKYGTRYGASLRKMVKKIEITQHSKYTCTFCGKTKMKRRAVGIWHCGSCMKTVAGGA 61
Query: 236 YTLNTASAVTVRSTIRRLREQTE 304
+T NT+SAVTV+S IRRLRE +
Sbjct: 62 WTYNTSSAVTVKSAIRRLREMKD 84
>gi|6225908|sp|O96184|R37A_PLAFA 60S RIBOSOMAL PROTEIN L37A
>gi|7441205|pir||C71614 ribosomal protein L37A PFB0455w - malaria
parasite (Plasmodium falciparum) >gi|3845189|gb|AAC71880.1|
(AE001396) ribosomal protein L37A [Plasmodium falciparum]
Length = 96
Frame 2 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | | | 96
0 20 40 60 80
Plus Strand HSPs:
Score = 307 (108.1 bits), Expect = 2.2e-26, P = 2.2e-26
Identities = 56/91 (61%), Positives = 70/91 (76%), Frame = +2
Query: 32 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 211
M++RTKK G+ GKYGTRYG+SLRKQIKK+E+ QH+K+ C FCGK A KR VGIW CK C
Sbjct: 1 MSRRTKKVGLTGKYGTRYGSSLRKQIKKIELMQHAKYLCTFCGKTATKRTCVGIWKCKKC 60
Query: 212 GKVKAGGAYTLNTASAVTVRSTIRRLREQTE 304
+ GGA++L T +AV +STI RLR+Q E
Sbjct: 61 KRKVCGGAWSLTTPAAVAAKSTIIRLRKQKE 91
>gi|12580789|emb|CAC27107.1| (AJ010592) 60S ribosomal protein L37A [Guillardia
theta]
Length = 91
Frame 2 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | | | 91
0 20 40 60 80
Plus Strand HSPs:
Score = 285 (100.3 bits), Expect = 4.7e-24, P = 4.7e-24
Identities = 51/90 (56%), Positives = 66/90 (73%), Frame = +2
Query: 32 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 211
M KRT K GIVGKYGTRYG+S+RKQIKK+E+SQH FFC+FCGK +KR ++GIW CK C
Sbjct: 1 MGKRTLKVGIVGKYGTRYGSSIRKQIKKIEISQHRTFFCKFCGKKKIKRISIGIWNCKKC 60
Query: 212 GKVKAGGAYTLNTASAVTVRSTIRRLREQT 301
K AGGA+ L T + ++ I++ + T
Sbjct: 61 NKTFAGGAWELQTEAGFLSQNIIKKTTKNT 90
>gi|2281793|dbj|BAA21635.1| (AB005904) ribosomal protein L37
[Schizosaccharomyces pombe]
Length = 85
Frame 2 hits (HSPs): ________________________________________________
__________________________________________________
Database sequence: | | | | | | 85
0 20 40 60 80
Plus Strand HSPs:
Score = 270 (95.0 bits), Expect = 1.8e-22, P = 1.8e-22
Identities = 50/82 (60%), Positives = 61/82 (74%), Frame = +2
Query: 65 GKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGC--KDCGKVKAGGAY 238
GKYG RYGASLR+ ++K+EV QHS++ C FCG+ VKR A GIW C K C K AGGA+
Sbjct: 3 GKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGKGCSKTLAGGAW 62
Query: 239 TLNTASAVTVRSTIRRLREQTE 304
T+ TA+A + RSTIRRLRE E
Sbjct: 63 TVTTAAATSARSTIRRLREMVE 84
>gi|441164|dbj|BAA01575.1| (D10731) ribosomal protein L37a [Gallus gallus]
Length = 71
Frame 2 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | | 71
0 20 40 60
Plus Strand HSPs:
Score = 240 (84.5 bits), Expect = 2.8e-19, P = 2.8e-19
Identities = 44/67 (65%), Positives = 53/67 (79%), Frame = +2
Query: 95 LRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRS 274
LRK +KK+E+SQH+K+ C FCGK +KRKAVGIW C C K AGGA+T NT SAVTV+S
Sbjct: 1 LRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKS 60
Query: 275 TIRRLRE 295
IRRL+E
Sbjct: 61 AIRRLKE 67
>gi|1709992|sp|P54051|R37A_METJA 50S RIBOSOMAL PROTEIN L37AE
>gi|2144783|pir||A64374 ribosomal protein L37a - Methanococcus
jannaschii >gi|1591302|gb|AAB98587.1| (U67508) LSU ribosomal
protein L37AE [Methanococcus jannaschii]
Length = 92
Frame 2 hits (HSPs): _________________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 92
0 20 40 60 80
__________________
Annotated Domains:
DOMO DM03458: RATRIBOSOMALPROTEINL37A 1..50
Entrez Zinc finger region: C4-TYPE. 39..60
PFAM Ribosomal_L37ae: Ribosomal L37ae protein 2..92
PRODOM PD006591: R37A(10) 5..90
__________________
Plus Strand HSPs:
Score = 188 (66.2 bits), Expect = 8.9e-14, P = 8.9e-14
Identities = 36/91 (39%), Positives = 50/91 (54%), Frame = +2
Query: 32 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 211
M TKK G G++G RYG +R +++ +E+ K+ C CG +KR + IW C C
Sbjct: 1 MFSHTKKVGPTGRFGPRYGLKIRVRVRDVEIKAKKKYKCPVCGFPKLKRASTSIWVCGKC 60
Query: 212 GKVKAGGAYTLNTASAVTVRSTIRRLREQTE 304
G AGGAYT T + V IRR+ E+ E
Sbjct: 61 GAKIAGGAYTPETGAGKAVMKAIRRIVERKE 91
>gi|3122647|sp|O26777|R37A_METTH 50S RIBOSOMAL PROTEIN L37AE
>gi|7441207|pir||G69190 ribosomal protein L37a - Methanobacterium
thermoautotrophicum (strain Delta H) >gi|2621766|gb|AAB85186.1|
(AE000848) ribosomal protein L37a [Methanothermobacter
thermautotrophicus]
Length = 89
Frame 2 hits (HSPs): _______________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 89
0 20 40 60 80
__________________
Annotated Domains:
Entrez Zinc finger region: C4-TYPE. 38..59
PFAM Ribosomal_L37ae: Ribosomal L37ae protein 1..89
PRODOM PD006591: R37A(10) 1..85
__________________
Plus Strand HSPs:
Score = 186 (65.5 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 35/83 (42%), Positives = 47/83 (56%), Frame = +2
Query: 41 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDCGKV 220
RTKK GI G++G RYG ++ +KK+E K C C + VKR++ GIW C+ CG V
Sbjct: 3 RTKKVGITGRFGPRYGRKAKRAVKKIEEEMKRKHVCPSCDRPGVKRESRGIWKCRKCGAV 62
Query: 221 KAGGAYTLNTASAVTVRSTIRRL 289
GGAY T T I+R+
Sbjct: 63 FTGGAYLPVTPMGKTAARNIKRI 85
>gi|7519913|pir||E75218 lsu ribosomal protein l37ae (rpl37ae) PAB7067 -
Pyrococcus abyssi (strain Orsay) >gi|5457705|emb|CAB49196.1|
(AJ248283) LSU ribosomal protein L37AE (rpl37AE) [Pyrococcus
abyssi]
Length = 83
Frame 2 hits (HSPs): ________________________________________
__________________________________________________
Database sequence: | | | | | | 83
0 20 40 60 80
Plus Strand HSPs:
Score = 180 (63.4 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 30/65 (46%), Positives = 41/65 (63%), Frame = +2
Query: 44 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDCGKVK 223
TKK G G++G RYG +R+++ +E K C CG+ AV+R + GIW CK CG +
Sbjct: 4 TKKVGSAGRFGPRYGLKIRRRVAAVEAKMRQKHVCPVCGRRAVRRISTGIWQCKKCGAIF 63
Query: 224 AGGAY 238
AGGAY
Sbjct: 64 AGGAY 68
>gi|6093891|sp|O74106|R37A_PYRHO 50S RIBOSOMAL PROTEIN L37AE
>gi|7441208|pir||B71204 probable ribosomal protein L37 - Pyrococcus
horikoshii >gi|3258342|dbj|BAA31025.1| (AP000007) 86aa long
hypothetical 50S ribosomal protein L37 [Pyrococcus horikoshii]
Length = 86
Frame 2 hits (HSPs): _____________________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | 86
0 20 40 60 80
__________________
Annotated Domains:
Entrez Zinc finger region: C4-TYPE. 41..62
PFAM Ribosomal_L37ae: Ribosomal L37ae protein 4..86
PRODOM PD006591: R37A(10) 4..82
__________________
Plus Strand HSPs:
Score = 179 (63.0 bits), Expect = 8.0e-13, P = 8.0e-13
Identities = 32/76 (42%), Positives = 43/76 (56%), Frame = +2
Query: 44 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDCGKVK 223
TKK G G++G RYG +R+++ +E K C CG+ AVKR + GIW C CG +
Sbjct: 7 TKKVGSAGRFGARYGLKIRRRVAAVEAKMRQKHVCPVCGRRAVKRISTGIWQCTKCGAIF 66
Query: 224 AGGAYTLNTASAVTVR 271
AGGAY T + R
Sbjct: 67 AGGAYLPVTPAGKVAR 82
>gi|11497677 ref|NP_068898.1| LSU ribosomal protein L37AE (rpl37AE)
[Archaeoglobus fulgidus] >gi|3914531|sp|O30179|R37A_ARCFU 50S
RIBOSOMAL PROTEIN L37AE >gi|7441209|pir||A69257 LSU ribosomal
protein L37AE (rpl37AE) homolog - Archaeoglobus fulgidus
>gi|2650586|gb|AAB91165.1| (AE001102) LSU ribosomal protein L37AE
(rpl37AE) [Archaeoglobus fulgidus]
Length = 83
Frame 2 hits (HSPs): ________________________________________________
__________________________________________________
Database sequence: | | | | | | 83
0 20 40 60 80
Plus Strand HSPs:
Score = 172 (60.5 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 33/80 (41%), Positives = 44/80 (55%), Frame = +2
Query: 41 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDCGKV 220
RTKK G++G RYG +R+ ++E Q K+ C+ CGK AVKR GIW C+ CG
Sbjct: 3 RTKKVRSAGRFGPRYGLRVRRTWLEIEAVQRQKYVCKKCGKKAVKRSGTGIWECRHCGYK 62
Query: 221 KAGGAYTLNTASAVTVRSTI 280
AGG Y T V ++
Sbjct: 63 FAGGCYQPVTPGGKIVEKSV 82
>gi|6831606|sp|Q9YC06|R37A_AERPE 50S RIBOSOMAL PROTEIN L37AE
>gi|7521373|pir||D72623 probable ribosomal protein L37 APES054 -
Aeropyrum pernix (strain K1) >gi|5105128|dbj|BAA80442.1|
(AP000061) 86aa long hypothetical 50S ribosomal protein L37
[Aeropyrum pernix]
Length = 86
Frame 2 hits (HSPs): ________________________________________
__________________________________________________
Database sequence: | | | | | | 86
0 20 40 60 80
Plus Strand HSPs:
Score = 169 (59.5 bits), Expect = 9.2e-12, P = 9.2e-12
Identities = 30/68 (44%), Positives = 42/68 (61%), Frame = +2
Query: 41 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYA-VKRKAVGIWGCKDCGK 217
RTK G G+YG RYG S+RK+++ + ++ C FCG V+R +VG+W C+ CG
Sbjct: 3 RTKVVGPAGRYGPRYGVSVRKRVRDILARRYQPHECPFCGSTGTVRRVSVGVWSCRKCGN 62
Query: 218 VKAGGAYT 241
AG AYT
Sbjct: 63 TWAGAAYT 70
>gi|10640639|emb|CAC12417.1| (AL445067) probable ribosomal protein L37
[Thermoplasma acidophilum]
Length = 80
Frame 2 hits (HSPs): ____________________________________________
__________________________________________________
Database sequence: | | | | | 80
0 20 40 60
Plus Strand HSPs:
Score = 169 (59.5 bits), Expect = 9.2e-12, P = 9.2e-12
Identities = 31/70 (44%), Positives = 45/70 (64%), Frame = +2
Query: 32 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 211
M+KRT K G+ G++G RYG ++RK+ ++ + + + C C K VKR A GIW C+ C
Sbjct: 1 MSKRTVKVGVAGRFGPRYGVTIRKEWSEIYKQKIALYTCPSCKKKRVKRVANGIWQCRHC 60
Query: 212 GKVKAGGAYT 241
G AGG+YT
Sbjct: 61 GYKFAGGSYT 70
>gi|10579880|gb|AAG18838.1| (AE004988) Vng0239c [Halobacterium sp. NRC-1]
Length = 105
Frame 2 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | | | | 105
0 20 40 60 80 100
Plus Strand HSPs:
Score = 158 (55.6 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 32/82 (39%), Positives = 43/82 (52%), Frame = +2
Query: 56 GIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGA 235
G G++G RYG R+++ +E + + C CG AV R+ GIW C CG AGGA
Sbjct: 18 GSAGRFGARYGRVSRRRVSDIEGTMNEDHACPDCGSEAVSREGTGIWQCGKCGYKYAGGA 77
Query: 236 YTLNTASAVTVRSTIRRLREQT 301
Y T S TV +IR +T
Sbjct: 78 YQPQTPSGKTVTRSIRTALGET 99
>gi|10120942|pdb|1FFK|W Chain W, Crystal Structure Of The Large Ribosomal
Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution
Length = 73
Frame 2 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | | 73
0 20 40 60
Plus Strand HSPs:
Score = 145 (51.0 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 26/68 (38%), Positives = 38/68 (55%), Frame = +2
Query: 65 GKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTL 244
G++G RYG +R +++ +E+ K+ C CG +KR + IW C CG AGGAYT
Sbjct: 3 GRFGPRYGLKIRVRVRDVEIKHKKKYKCPVCGFPKLKRASTSIWVCGHCGYKIAGGAYTP 62
Query: 245 NTASAVTV 268
T + V
Sbjct: 63 ETVAGKAV 70
>gi|6325301 ref|NP_015369.1| Ypr044cp [Saccharomyces cerevisiae]
>gi|2132261|pir||S69471 hypothetical protein YPR044c - yeast
(Saccharomyces cerevisiae)
Length = 117
Frame -3 hits (HSPs): ______________________________________________
__________________________________________________
Database sequence: | | | | 117
0 50 100
Minus Strand HSPs:
Score = 122 (42.9 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 35/105 (33%), Positives = 55/105 (52%), Frame = -3
Query: 319 KLLSTLSLLSQPPNGAPDSDSTRSIQCVSTSSLHFSTIFAAPNTHGLPLNSVLSTELTKE 140
K+ S+ + SQ +G + + S VST+S T +PNT L+ +L+TE T
Sbjct: 8 KIKSSFNHFSQSSDGRSNGGGSSSGDSVSTTSDGLLTTGTSPNTSSTSLDGLLTTERTIV 67
Query: 139 FTVLTNFHLLDLLP*TSTISGAVFSNNTGLLGSLGHFLVIREEVS 5
+VL +F LLDL TI+ V +++T LL S +E++S
Sbjct: 68 SSVLLDFQLLDLSSQRGTITDTVLTSDTNLLSSFSPVFK-KEKIS 111
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.98
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.346 0.152 0.480
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.363 0.161 0.599
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.355 0.160 0.606
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.374 0.169 0.632
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.349 0.149 0.540
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.337 0.146 0.434
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 159 159 10. 75 3 12 22 0.099 34
30 0.098 37
+2 0 159 159 10. 75 3 12 22 0.099 34
30 0.098 37
+1 0 160 160 10. 75 3 12 22 0.10 34
30 0.099 37
-1 0 160 160 10. 75 3 12 22 0.10 34
30 0.099 37
-2 0 159 159 10. 75 3 12 22 0.099 34
30 0.098 37
-3 0 159 159 10. 75 3 12 22 0.099 34
30 0.098 37
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 32
No. of states in DFA: 590 (58 KB)
Total size of DFA: 188 KB (192 KB)
Time to generate neighborhood: 0.01u 0.01s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 152.82u 1.11s 153.93t Elapsed: 00:00:31
Total cpu time: 152.83u 1.17s 154.00t Elapsed: 00:00:31
Start: Thu Jan 17 01:51:32 2002 End: Thu Jan 17 01:52:03 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000