BLASTP 2.2.4 [Aug-26-2002]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SAG0250
         (193 letters)

Database: nr 
           1,487,057 sequences; 479,114,161 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|22536434|ref|NP_687285.1| membrane protein, putative [Strepto...   251   3e-66
gi|28461302|gb|AAO43831.1| putative membrane protein [Streptococ...    72   3e-12

>gi|22536434|ref|NP_687285.1| membrane protein, putative
           [Streptococcus agalactiae 2603V/R]
 gi|22533263|gb|AAM99157.1|AE014203_4 membrane protein, putative
           [Streptococcus agalactiae 2603V/R]
          Length = 193

 Score =  251 bits (642), Expect = 3e-66
 Identities = 193/193 (100%), Positives = 193/193 (100%)

Query: 1   MNNKNKWTIILLIFTIIVIDVSLLFGGNRLSLPIKLLILLVTSIAEFCSIFIMIKVPTPQ 60
           MNNKNKWTIILLIFTIIVIDVSLLFGGNRLSLPIKLLILLVTSIAEFCSIFIMIKVPTPQ
Sbjct: 1   MNNKNKWTIILLIFTIIVIDVSLLFGGNRLSLPIKLLILLVTSIAEFCSIFIMIKVPTPQ 60

Query: 61  KYKKEPFGLKAKFYSIVLFLSTILYTIGIWNVTPASPYNVKESILGVGILIQVVFFIYFL 120
           KYKKEPFGLKAKFYSIVLFLSTILYTIGIWNVTPASPYNVKESILGVGILIQVVFFIYFL
Sbjct: 61  KYKKEPFGLKAKFYSIVLFLSTILYTIGIWNVTPASPYNVKESILGVGILIQVVFFIYFL 120

Query: 121 LKKINESPDERFYSNLALSASLMFLISIMLLILIAIYLNIYGTLELKSGYLYIMVGLLLL 180
           LKKINESPDERFYSNLALSASLMFLISIMLLILIAIYLNIYGTLELKSGYLYIMVGLLLL
Sbjct: 121 LKKINESPDERFYSNLALSASLMFLISIMLLILIAIYLNIYGTLELKSGYLYIMVGLLLL 180

Query: 181 MFAVTYYFLEGRR 193
           MFAVTYYFLEGRR
Sbjct: 181 MFAVTYYFLEGRR 193



>gi|28461302|gb|AAO43831.1| putative membrane protein [Streptococcus
           gordonii]
          Length = 178

 Score = 72.4 bits (176), Expect = 3e-12
 Identities = 52/137 (37%), Positives = 82/137 (58%), Gaps = 3/137 (2%)

Query: 34  IKLLILLVTSIAEFCSIFIMIKVPTPQKYKKEPFGLKAKFYSIVLFLSTILYTIGIWNVT 93
           IK  + LVT I     IF ++     Q+ +++ FGL  K Y + LF +  +YT GIW +T
Sbjct: 31  IKHTVFLVT-ITMQGLIFWLVSKAQSQEDEEKYFGLTEKLYGMTLFTAMAIYTKGIWIIT 89

Query: 94  PA-SPYNVKESILGVGILIQVVFFIYFLLKKINESPDERFYSNLALSASLMFLISIMLLI 152
           PA SP  +K   LG G+ I ++ F+YF LKK++E  DERFY NLA +A    ++ ++ LI
Sbjct: 90  PATSPIWLKHLFLGSGLFILILCFLYFALKKVDEQADERFYMNLAKAACTTLVLIVLSLI 149

Query: 153 LIAIYLNIYGTLELKSG 169
           +++I +  +    L++G
Sbjct: 150 VLSI-VTFFXPFTLRTG 165



  Database: nr
    Posted date:  Aug 11, 2003  9:58 AM
  Number of letters in database: 479,114,161
  Number of sequences in database:  1,487,057
  
Lambda     K      H
   0.331    0.149    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169,752,628
Number of Sequences: 1487057
Number of extensions: 6446624
Number of successful extensions: 28721
Number of sequences better than 1.0e-04: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28718
Number of HSP's gapped (non-prelim): 2
length of query: 193
length of database: 479,114,161
effective HSP length: 117
effective length of query: 76
effective length of database: 305,128,492
effective search space: 23189765392
effective search space used: 23189765392
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 112 (47.8 bits)