BLASTP 2.2.4 [Aug-26-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SAG0250
(193 letters)
Database: nr
1,487,057 sequences; 479,114,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22536434|ref|NP_687285.1| membrane protein, putative [Strepto... 251 3e-66
gi|28461302|gb|AAO43831.1| putative membrane protein [Streptococ... 72 3e-12
>gi|22536434|ref|NP_687285.1| membrane protein, putative
[Streptococcus agalactiae 2603V/R]
gi|22533263|gb|AAM99157.1|AE014203_4 membrane protein, putative
[Streptococcus agalactiae 2603V/R]
Length = 193
Score = 251 bits (642), Expect = 3e-66
Identities = 193/193 (100%), Positives = 193/193 (100%)
Query: 1 MNNKNKWTIILLIFTIIVIDVSLLFGGNRLSLPIKLLILLVTSIAEFCSIFIMIKVPTPQ 60
MNNKNKWTIILLIFTIIVIDVSLLFGGNRLSLPIKLLILLVTSIAEFCSIFIMIKVPTPQ
Sbjct: 1 MNNKNKWTIILLIFTIIVIDVSLLFGGNRLSLPIKLLILLVTSIAEFCSIFIMIKVPTPQ 60
Query: 61 KYKKEPFGLKAKFYSIVLFLSTILYTIGIWNVTPASPYNVKESILGVGILIQVVFFIYFL 120
KYKKEPFGLKAKFYSIVLFLSTILYTIGIWNVTPASPYNVKESILGVGILIQVVFFIYFL
Sbjct: 61 KYKKEPFGLKAKFYSIVLFLSTILYTIGIWNVTPASPYNVKESILGVGILIQVVFFIYFL 120
Query: 121 LKKINESPDERFYSNLALSASLMFLISIMLLILIAIYLNIYGTLELKSGYLYIMVGLLLL 180
LKKINESPDERFYSNLALSASLMFLISIMLLILIAIYLNIYGTLELKSGYLYIMVGLLLL
Sbjct: 121 LKKINESPDERFYSNLALSASLMFLISIMLLILIAIYLNIYGTLELKSGYLYIMVGLLLL 180
Query: 181 MFAVTYYFLEGRR 193
MFAVTYYFLEGRR
Sbjct: 181 MFAVTYYFLEGRR 193
>gi|28461302|gb|AAO43831.1| putative membrane protein [Streptococcus
gordonii]
Length = 178
Score = 72.4 bits (176), Expect = 3e-12
Identities = 52/137 (37%), Positives = 82/137 (58%), Gaps = 3/137 (2%)
Query: 34 IKLLILLVTSIAEFCSIFIMIKVPTPQKYKKEPFGLKAKFYSIVLFLSTILYTIGIWNVT 93
IK + LVT I IF ++ Q+ +++ FGL K Y + LF + +YT GIW +T
Sbjct: 31 IKHTVFLVT-ITMQGLIFWLVSKAQSQEDEEKYFGLTEKLYGMTLFTAMAIYTKGIWIIT 89
Query: 94 PA-SPYNVKESILGVGILIQVVFFIYFLLKKINESPDERFYSNLALSASLMFLISIMLLI 152
PA SP +K LG G+ I ++ F+YF LKK++E DERFY NLA +A ++ ++ LI
Sbjct: 90 PATSPIWLKHLFLGSGLFILILCFLYFALKKVDEQADERFYMNLAKAACTTLVLIVLSLI 149
Query: 153 LIAIYLNIYGTLELKSG 169
+++I + + L++G
Sbjct: 150 VLSI-VTFFXPFTLRTG 165
Database: nr
Posted date: Aug 11, 2003 9:58 AM
Number of letters in database: 479,114,161
Number of sequences in database: 1,487,057
Lambda K H
0.331 0.149 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169,752,628
Number of Sequences: 1487057
Number of extensions: 6446624
Number of successful extensions: 28721
Number of sequences better than 1.0e-04: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28718
Number of HSP's gapped (non-prelim): 2
length of query: 193
length of database: 479,114,161
effective HSP length: 117
effective length of query: 76
effective length of database: 305,128,492
effective search space: 23189765392
effective search space used: 23189765392
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 112 (47.8 bits)