Publications

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Following is a 2006 listing of publications. For the full list of ERSP publications (including addresses, abstracts, keywords, and references cited), please download the Endnote file above.

1. Abulencia, C. B., D. L. Wyborski, J. A. Garcia, M. Podar, W. Q. Chen, S. H. Chang, H. W. Chang, D. Watson, E. L. Brodie, T. C. Hazen, and M. Keller. 2006. Environmental whole-genome amplification to access microbial populations in contaminated sediments. Applied and Environmental Microbiology 72:3291-3301.

2. Ackerley, D. F., Y. Barak, S. V. Lynch, J. Curtin, and A. Matin. 2006. Effect of chromate stress on Escherichia coli K-12. Journal of Bacteriology 188:3371-3381.

3. Alam, M., M. A. Hossain, D. R. Yonge, B. M. Peyton, and J. N. Petersen. 2006. Bioreduction of hexavalent chromium in flow-through quartz sand columns. Journal of Environmental Engineering-Asce 132:358-366.

4. Antony, J., J. Nutting, D. R. Baer, D. Meyer, A. Sharma, and Y. Qiang. 2006. Size-dependent specific surface area of nanoporous film assembled by core-shell iron nanoclusters. Journal of Nanomaterials.

6. Arai, Y., M. McBeath, J. R. Bargar, J. Joye, and J. A. Davis. 2006. Uranyl adsorption and surface speciation at the imogolite-water interface: Self-consistent spectroscopic and surface complexation models. Geochimica Et Cosmochimica Acta 70:2492-2509.

7. Bagwell, C. E., X. Liu, L. Wu, and J. Zhou. 2006. Effects of legacy nuclear waste on the compositional diversity and distributions of sulfate-reducing bacteria in a terrestrial subsurface aquifer. Fems Microbiology Ecology 55:424-431.

8. Barak, Y., D. F. Ackerley, C. J. Dodge, L. Banwari, C. Alex, A. J. Francis, and A. Matin. 2006. Analysis of novel soluble chromate and uranyl reductases and generation of an improved enzyme by directed evolution. Applied and Environmental Microbiology 72:7074-7082.

9. Barak, Y., S. H. Thorne, D. F. Ackerley, S. V. Lynch, C. H. Contag, and A. Matin. 2006. New enzyme for reductive cancer chemotherapy, YieF, and its improvement by directed evolution. Molecular Cancer Therapeutics 5:97-103.

10. Becker, J. M., T. Parkin, C. H. Nakatsu, J. D. Wilbur, and A. Konopka. 2006. Bacterial activity, community structure, and centimeter-scale spatial heterogeneity in contaminated soil. Microbial Ecology 51:220-231.

11. Bluhm, H., K. Andersson, T. Araki, K. Benzerara, G. E. Brown, J. J. Dynes, S. Ghosal, M. K. Gilles, H. C. Hansen, J. C. Hemminger, A. P. Hitchcock, G. Ketteler, A. L. D. Kilcoyne, E. Kneedler, J. R. Lawrence, G. G. Leppard, J. Majzlam, B. S. Mun, S. C. B. Myneni, A. Nilsson, H. Ogasawara, D. F. Ogletree, K. Pecher, M. Salmeron, D. K. Shuh, B. Tonner, T. Tyliszczak, T. Warwick, and T. H. Yoon. 2006. Soft X-ray microscopy and spectroscopy at the molecular environmental science beamline at the Advanced Light Source. Journal of Electron Spectroscopy and Related Phenomena 150:86-104.

12. Brim, H., J. P. Osborne, H. M. Kostandarithes, J. K. Fredrickson, L. P. Wackett, and M. J. Daly. 2006. Deinococcus radiodurans engineered for complete toluene degradation facilitates Cr(VI) reduction. Microbiology-Sgm 152:2469-2477.

13. Brodie, E. L., T. Z. DeSantis, D. C. Joyner, S. M. Baek, J. T. Larsen, G. L. Andersen, T. C. Hazen, P. M. Richardson, D. J. Herman, T. K. Tokunaga, J. M. M. Wan, and M. K. Firestone. 2006. Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation. Applied and Environmental Microbiology 72:6288-6298.

14. Brown, S. D., M. R. Thompson, N. C. VerBerkmoes, K. Chourey, M. Shah, J. Z. Zhou, R. L. Hettich, and D. K. Thompson. 2006. Molecular dynamics of the Shewanella oneidensis response to chromate stress. Molecular & Cellular Proteomics 5:1054-1071.

15. Burgos, W. D., and N. Pisutpaisal. 2006. Sorption of naphthoic acids and quinoline compounds to estuarine sediment. Journal of Contaminant Hydrology 84:107-126.
    

16. Burke, I. T., C. Boothman, J. R. Lloyd, F. R. Livens, J. M. Charnock, J. M. McBeth, R. J. G. Mortimer, and K. Morris. 2006. Reoxidation behavior of technetium, iron, and sulfur in estuarine sediments. Environmental Science & Technology 40:3529-3535.

17. Catalano, J. G., J. P. McKinley, J. M. Zachara, S. M. Heald, S. C. Smith, and G. E. Brown. 2006. Changes in uranium speciation through a depth sequence of contaminated Hanford sediments. Environmental Science & Technology 40:2517-2524.

18. Chandler, D. P., A. E. Jarrell, E. R. Roden, J. Golova, B. Chernov, M. J. Schipma, A. D. Peacock, and P. E. Long. 2006. Suspension array analysis of 16S rRNA from fe- and SO42-reducing bacteria in uranium-contaminated sediments undergoing bioremediation. Applied and Environmental Microbiology 72:4672-4687.

19. Chang, H. S., G. V. Korshin, Z. M. Wang, and J. M. Zachara. 2006. Adsorption of uranyl on gibbsite: A time-resolved laser-induced fluorescence spectroscopy study. Environmental Science & Technology 40:1244-1249.

20. Chen, J., S. Hubbard, J. Peterson, K. Williams, M. Fienen, P. Jardine, and D. Watson. 2006. Development of a joint hydrogeophysical inversion approach and application to a contaminated fractured aquifer. Water Resources Research 42.
    

21. Chhabra, S. R., Q. He, K. H. Huang, S. P. Gaucher, E. J. Alm, Z. He, M. Z. Hadi, T. C. Hazen, J. D. Wall, J. Zhou, A. P. Arkin, and A. K. Singh. 2006. Global analysis of heat shock response in Desulfovibrio vulgaris Hildenborough. Journal of Bacteriology 188:1817-1828.

22. Clark, M. E., Q. He, Z. He, K. H. Huang, E. J. Alm, X. F. Wan, T. C. Hazen, A. P. Arkin, J. D. Wall, J. Z. Zhou, and M. W. Fields. 2006. Temporal transcriptomic analysis as Desulfovibrio vulgaris hildenborough transitions into stationary phase during electron donor depletion. Applied and Environmental Microbiology 72:5578-5588.

23. Daly, M. J. 2006. Modulating radiation resistance: Insights based on defenses against reactive oxygen species in the radioresistant bacterium Deinococcus radiodurans. Clinics in Laboratory Medicine 26:491-+.

24. Deng, Y. J., M. Flury, J. B. Harsh, A. R. Felmy, and O. Qafoku. 2006. Cancrinite and sodalite formation in the presence of cesium, potassium, magnesium, calcium and strontium in Hanford tank waste simulants. Applied Geochemistry 21:2049-2063.

25. Ding, Y. H. R., K. K. Hixson, C. S. Giometti, A. Stanley, A. Esteve-Nunez, T. Khare, S. L. Tollaksen, W. H. Zhu, J. N. Adkins, M. S. Lipton, R. D. Smith, T. Mester, and D. R. Lovley. 2006. The proteome of dissimilatory metal-reducing microorganism Geobacter sulfurreducens under various growth conditions. Biochimica Et Biophysica Acta-Proteins and Proteomics 1764:1198-1206.

26. Dong, H. L., T. D. Scheibe, W. P. Johnson, C. M. Monkman, and M. E. Fuller. 2006. Change of collision efficiency with distance in bacterial transport experiments. Ground Water 44:415-429.

27. Dong, W. M., and S. C. Brooks. 2006. Determination of the formation constants of ternary complexes of uranyl and carbonate with alkaline earth metals (Mg2+, Ca2+, Sr2+, and Ba2+) using anion exchange method. Environmental Science & Technology 40:4689-4695.

28. Fields, M. W., C. E. Bagwell, S. L. Carroll, T. Yan, X. Liu, D. B. Watson, P. M. Jardine, C. S. Criddle, T. C. Hazen, and J. Zhou. 2006. Phylogenetic and functional biomakers as indicators of bacterial community responses to mixed-waste contamination. Environmental Science & Technology 40:2601-2607.

29. Fox, J. R., R. J. G. Mortimer, G. Lear, J. R. Lloyd, I. Beadle, and K. Morris. 2006. The biogeochemical behaviour of U(VI) in the simulated near-field of a low-level radioactive waste repository. Applied Geochemistry 21:1539-1550.

30. Fox, P. M., J. A. Davis, and J. M. Zachara. 2006. The effect of calcium on aqueous uranium(VI) speciation and adsorption to ferrihydrite and quartz. Geochimica Et Cosmochimica Acta 70:1379-1387.

31. Gentile, M., T. Yan, S. M. Tiquia, M. W. Fields, J. Nyman, J. Zhou, and C. S. Criddle. 2006. Stability in a denitrifying fluidized bed reactor. Microbial Ecology 52:311-321.

32. Ginder-Vogel, M., C. S. Criddle, and S. Fendorf. 2006. Thermodynamic constraints on the oxidation of biogenic UO2 by Fe(III) (hydr) oxides. Environmental Science & Technology 40:3544-3550.

33. Hazen, T. C., and D. A. Stahl. 2006. Using the stress response to monitor process control: pathways to more effective bioremediation. Current Opinion in Biotechnology 17:285-290.

34. Hazen, T. C., K. Timmis, D. Stahl, E. DeLong, and M. Wagner. 2006. This issue of environmental microbiology is dedicated to the memory of David. C. White. Environmental Microbiology 8:2059-2061.

35. He, Q., K. H. Huang, Z. L. He, E. J. Alm, M. W. Fields, T. C. Hazen, A. P. Arkin, J. D. Wall, and J. Z. Zhou. 2006. Energetic consequences of nitrite stress in Desulfovibrio vulgaris Hildenborough, inferred from global transcriptional analysis. Applied and Environmental Microbiology 72:4370-4381.

36. Hinton, T. G., D. I. Kaplan, A. S. Knox, D. P. Coughlin, R. V. Nascimento, S. I. Watson, D. E. Fletcher, and B. J. Koo. 2006. Use of illite clay for in situ remediation of Cs-137-contaminated water bodies: Field demonstration of reduced biological uptake. Environmental Science & Technology 40:4500-4505.

37. Hua, B., H. F. Xu, J. Terry, and B. L. Deng. 2006. Kinetics of uranium(VI) reduction by hydrogen sulfide in anoxic aqueous systems. Environmental Science & Technology 40:4666-4671.

38. Hwang, C., W. M. Wu, T. J. Gentry, J. Carley, S. L. Carroll, C. Schadt, D. Watson, P. M. Jardine, J. Zhou, R. F. Hickey, C. S. Criddle, and M. W. Fields. 2006. Changes in bacterial community structure correlate with initial operating conditions of a field-scale denitrifying fluidized bed reactor. Applied Microbiology And Biotechnology 71:748-760.

39. Ilton, E. S., C. X. Liu, W. Yantasee, Z. M. Wang, D. A. Moore, A. R. Felmy, and J. M. Zachara. 2006. The dissolution of synthetic Na-boltwoodite in sodium carbonate solutions. Geochimica Et Cosmochimica Acta 70:4836-4849.

40. Jang, J. H., B. A. Dempsey, and W. D. Burgos. 2006. Solubility of schoepite: Comparison and selection of complexation constants for U(VI). Water Research 40:2738-2746.

41. Jardine, P. M., M. A. Mayes, P. J. Mulholland, P. J. Hanson, J. R. Tarver, R. J. Luxmoore, J. F. McCarthy, and G. V. Wilson. 2006. Vadose zone flow and transport of dissolved organic carbon at multiple scales in humid regimes. Vadose Zone Journal 5:140-152.

42. Joynt, J., M. Bischoff, R. Turco, A. Konopka, and C. H. Nakatsu. 2006. Microbial community analysis of soils contaminaed with lead, chromium and petroleum hydrocarbons. Microbial Ecology 51:209-219.

43. Kaplan, D. I., D. I. Demirkanli, L. Gumapas, B. A. Powell, R. A. Fjeld, F. J. Molz, and S. M. Serkiz. 2006. Eleven-year field study of Pu migration from PuIII, IV, and VI sources. Environmental Science & Technology 40:443-448.

44. Kaplan, D. I., B. A. Powell, L. Gumapas, J. T. Coates, R. A. Fjeld, and D. P. Diprete. 2006. Influence of pH on plutonium desorption/solubilization from sediment. Environmental Science & Technology 40:5937-5942.

45. Kelly, S. D., E. T. Rasbury, S. Chattopadhyay, A. J. Kropf, and K. M. Kemner. 2006. Evidence of a stable uranyl site in ancient organic-rich calcite. Environmental Science & Technology 40:2262-2268.

46. Kerin, E. J., C. C. Gilmour, E. Roden, M. T. Suzuki, J. D. Coates, and R. P. Mason. 2006. Mercury methylation by dissimilatory iron-reducing bacteria. Applied and Environmental Microbiology 72:7919-7921.

47. Khare, T., and C. S. Giometti. 2006. Differential recovery of biotinylated microbial proteins using monomeric or polymeric avidin. Biotechniques 40:584-+.

48. Kim, B. C., X. L. Qian, L. A. Ching, M. V. Coppi, and D. R. Lovley. 2006. Two putative c-type multiheme cytochromes required for the expression of OmcB, an outer membrane protein essential for optimal Fe(III) reduction in Geobacter sulfurreducens. Journal Of Bacteriology 188:3138-3142.

49. Knox, A. S., D. I. Kaplan, and M. H. Paller. 2006. Phosphate sources and their suitability for remediation of contaminated soils. Science of the Total Environment 357:271-279.

50. Kourtev, P. S., C. H. Nakatsu, and A. Konopka. 2006. Responses of the anaerobic bacterial community to addition of organic C in chromium(VI)- and iron(III)-amended microcosms. Applied and Environmental Microbiology 72:628-637.

51. Kukkadapu, R. K., J. M. Zachara, J. K. Fredrickson, J. P. McKinley, D. W. Kennedy, S. C. Smith, and H. L. Dong. 2006. Reductive biotransformation of Fe in shale-limestone saprolite containing Fe(III) oxides and Fe(II)/Fe(III) phyllosilicates. Geochimica Et Cosmochimica Acta 70:3662-3676.

52. Lee, K., J. E. Kostka, and J. W. Stucki. 2006. Comparisons of structural Fe reduction in smectites by bacteria and dithionite: An infrared spectroscopic study. Clays and Clay Minerals 54:195-208.

53. Leri, A. C., M. B. Hay, A. Lanzirotti, W. Rao, and S. C. B. Myneni. 2006. Quantitative determination of absolute organohalogen concentrations in environmental samples by X-ray absorption spectroscopy. Analytical Chemistry 78:5711-5718.

54. Lin, L. H., P. L. Wang, D. Rumble, J. Lippmann-Pipke, E. Boice, L. M. Pratt, B. S. Lollar, E. L. Brodie, T. C. Hazen, G. L. Andersen, T. Z. DeSantis, D. P. Moser, D. Kershaw, and T. C. Onstott. 2006. Long-term sustainability of a high-energy, low-diversity crustal biome. Science 314:479-482.

55. Linde, N., S. Finsterle, and S. Hubbard. 2006. Inversion of tracer test data using tomographic constraints. Water Resources Research 42.

56. Liu, C. X., B. H. Jeon, J. M. Zachara, Z. M. Wang, A. Dohnalkova, and J. K. Fredrickson. 2006. Kinetics of microbial reduction of solid phase U(VI). Environmental Science & Technology 40:6290-6296.

57. Liu, C. X., J. M. Zachara, W. Yantasee, P. D. Majors, and J. P. McKinley. 2006. Microscopic reactive diffusion of uranium in the contaminated sediments at Hanford, United States. Water Resources Research 42.

58. Loffler, F. E., and E. A. Edwards. 2006. Harnessing microbial activities for environmental cleanup. Current Opinion in Biotechnology 17:274-284.

59. Luo, J., W. M. Wu, M. N. Fienen, P. M. Jardine, T. L. Mehlhorn, D. B. Watson, O. A. Cirpka, C. S. Criddle, and P. K. Kitanidis. 2006. A nested-cell approach for in situ remediation. Ground Water 44:266-274.

60. Marshall, M. J., A. S. Beliaev, A. C. Dohnalkova, D. W. Kennedy, L. Shi, Z. M. Wang, M. I. Boyanov, B. Lai, K. M. Kemner, J. S. McLean, S. B. Reed, D. E. Culley, V. L. Bailey, C. J. Simonson, D. A. Saffarini, M. F. Romine, J. M. Zachara, and J. K. Fredrickson. 2006. c-Type cytochrome-dependent formation of U(IV) nanoparticles by Shewanella oneidensis. Plos Biology 4:1324-1333.

61. Martinez, R. J., Y. L. Wang, M. A. Raimondo, J. M. Coombs, T. Barkay, and P. A. Sobecky. 2006. Horizontal gene transfer of P-IB-type ATPases among bacteria isolated from radionuclide- and metal-contaminated subsurface soils. Applied and Environmental Microbiology 72:3111-3118.

62. Martiny, J. B. H., B. J. M. Bohannan, J. H. Brown, R. K. Colwell, J. A. Fuhrman, J. L. Green, M. C. Horner-Devine, M. Kane, J. A. Krumins, C. R. Kuske, P. J. Morin, S. Naeem, L. Ovreas, A. L. Reysenbach, V. H. Smith, and J. T. Staley. 2006. Microbial biogeography: putting microorganisms on the map. Nature Reviews Microbiology 4:102-112.

63. Mathur, J. N., P. Thakur, C. J. Dodge, A. J. Francis, and G. R. Choppin. 2006. Coordination modes in the formation of the ternary Am(III), Cm(III), and Eu(III) complexes with EDTA and NTA: TRLFS, C-13 NMR, EXAFS, and thermodynamics of the complexation. Inorganic Chemistry 45:8026-8035.

64. McKinley, J. P., J. M. Zachara, C. X. Liu, S. C. Heald, B. I. Prenitzer, and B. W. Kempshall. 2006. Microscale controls on the fate of contaminant uranium in the vadose zone, Hanford Site, Washington. Geochimica Et Cosmochimica Acta 70:1873-1887.

65. Mehta, T., S. E. Childers, R. Glaven, D. R. Lovley, and T. Mester. 2006. A putative multicopper protein secreted by an atypical type II secretion system involved in the reduction of insoluble electron acceptors in Geobacter sulfurreducens. Microbiology-Sgm 152:2257-2264.

66. Michalsen, M. M., B. A. Goodman, S. D. Kelly, K. M. Kemner, J. P. McKinley, J. W. Stucki, and J. D. Istok. 2006. Uranium and technetium bio-immobilization in intermediate-scale physical models of an in situ bio-barrier. Environmental Science & Technology 40:7048-7053.

67. Militza, C. C. N., C. H. Nakatsu, and A. Konopka. 2006. Effect of nutrient periodicity on microbial community dynamics. Applied and Environmental Microbiology 72:3175-3183.

68. Moon, J. W., Y. Roh, T. J. Phelps, D. H. Phillips, D. B. Watson, Y. J. Kim, and S. C. Brooks. 2006. Physicochemical and mineralogical characterization of soil-saprolite cores from a field research site, Tennessee. Journal of Environmental Quality 35:1731-1741.

69. Mukhopadhyay, A., Z. L. He, E. J. Alm, A. P. Arkin, E. E. Baidoo, S. C. Borglin, W. Q. Chen, T. C. Hazen, Q. He, H. Y. Holman, K. Huang, R. Huang, D. C. Joyner, N. Katz, M. Keller, P. Oeller, A. Redding, J. Sun, J. Wall, J. Wei, Z. M. Yang, H. C. Yen, J. Z. Zhou, and J. D. Keasling. 2006. Salt stress in Desulfovibrio vulgaris Hildenborough: An integrated genomics a pproach. Journal of Bacteriology 188:4068-4078.

70. Norbeck, A. D., S. J. Callister, M. E. Monroe, N. Jaitly, D. A. Elias, M. S. Lipton, and R. D. Smith. 2006. Proteomic approaches to bacterial differentiation. Journal Of Microbiological Methods 67:473-486.

71. Nyman, J. L., T. L. Marsh, M. A. Ginder-Vogel, M. Gentile, S. Fendorf, and C. Criddle. 2006. Heterogeneous response to biostimulation for U(VI) reduction in replicated sediment microcosms. Biodegradation 17:303-316.

72. Nyman, M., and D. T. Hobbs. 2006. A family of peroxo-titanate materials tailored for optimal strontium and actinide sorption. Chemistry of Materials 18:6425-6435.

73. Pattarkine, M. V., J. J. Tanner, C. A. Bottoms, Y. H. Lee, and J. D. Wall. 2006. Desulfovibrio desulfuricans G20 tetraheme cytochrome structure at 1.5 angstrom and cytochrome interaction with metal complexes. Journal of Molecular Biology 358:1314-1327.
    

74. Payne, A. N., and T. J. DiChristina. 2006. A rapid mutant screening technique for detection of technetium [Tc(VII)] reduction-deficient mutants of Shewanella oneidensis MR-1. Fems Microbiology Letters 259:282-287.

75. Powell, B. A., M. C. Duff, D. I. Kaplan, R. A. Fjeld, M. Newville, D. B. Hunter, P. M. Bertsch, J. T. Coates, P. Eng, M. L. Rivers, S. R. Sutton, I. R. Triay, and D. T. Vaniman. 2006. Plutonium oxidation and subsequent reduction by Mn(IV) minerals in Yucca Mountain tuff. Environmental Science & Technology 40:3508-3514.

76. Priester, J. H., S. G. Olson, S. M. Webb, M. P. Neu, L. E. Hersman, and P. A. Holden. 2006. Enhanced exopolymer production and chromium stabilization in Pseudomonas putida unsaturated biofilms. Applied and Environmental Microbiology 72:1988-1996.

77. Qin, J., L. Y. Song, H. Brim, M. J. Daly, and A. O. Summers. 2006. Hg(II) sequestration and protection by the MerR metal-binding domain (MBD). Microbiology-Sgm 152:709-719.

78. Qiu, X. Y., M. J. Daly, A. Vasilenko, M. V. Omelchenko, E. K. Gaidamakova, L. Y. Wu, J. Z. Zhou, G. W. Sundin, and J. M. Tiedje. 2006. Transcriptome analysis applied to survival of Shewanella oneidensis MR-1 exposed to ionizing radiation. Journal of Bacteriology 188:1199-1204.

79. Rademacher, L. K., C. C. Lundstrom, T. M. Johnson, R. A. Sanford, J. Z. Zhao, and Z. F. Zhang. 2006. Experimentally determined uranium isotope Fractionation during reduction of hexavalent U by bacteria and zero valent iron. Environmental Science & Technology 40:6943-6948.

80. Redding, A. M., A. Mukhopadhyay, D. C. Joyner, T. C. Hazen, and J. D. Keasling. 2006. Study of nitrate stress in Desulfovibrio vulgaris Hildenborough using iTRAQ proteomics. Brief Funct Genomic Proteomic 5:133-43.

81. Reguera, G., K. P. Nevin, J. S. Nicoll, S. F. Covalla, T. L. Woodard, and D. R. Lovley. 2006. Biofilm and nanowire production leads to increased current in Geobacter sulfurreducens fuel cells. Applied And Environmental Microbiology 72:7345-7348.

82. Scheibe, T. D., Y. L. Fang, C. J. Murray, E. E. Roden, J. S. Chen, Y. J. Chien, S. C. Brooks, and S. S. Hubbard. 2006. Transport and biogeochemical reaction of metals in a physically and chemically heterogeneous aquifer. Geosphere 2:220-235.

83. Shi, L., B. W. Chen, Z. M. Wang, D. A. Elias, M. U. Mayer, Y. A. Gorby, S. Ni, B. H. Lower, D. W. Kennedy, D. S. Wunschel, H. M. Mottaz, M. J. Marshall, E. A. Hill, A. S. Beliaev, J. M. Zachara, J. K. Fredrickson, and T. C. Squier. 2006. Isolation of a high-affinity functional protein complex between OmcA and MtrC: Two outer membrane decaheme c-type cytochromes of Shewanella oneidensis MR-1. Journal of Bacteriology 188:4705-4714.

84. Smith, D. M. A., K. M. Rosso, M. Dupuis, M. Valiev, and T. P. Straatsma. 2006. Electronic coupling between heme electron-transfer centers and its decay with distance depends strongly on relative orientation. Journal of Physical Chemistry B 110:15582-15588.

85. Stone, J. J., W. D. Burgos, R. A. Royer, and B. A. Dempsey. 2006. Impact of zinc on biological Fe(III) and nitrate reduction by Shewanella putrefaciens CN32. Environmental Engineering Science 23:691-704.

    Stone, J. J., W. D. Burgos, R. A. Royer, and B. A. Dempsey. 2006. Zinc and manganese inhibition of biological hematite reduction. Environmental Engineering Science 23:851-862.

86. Stubbs, J. E., D. C. Elbert, D. R. Veblen, and C. Zhu. 2006. Electron microbeam investigation of uranium-contaminated soils from Oak Ridge, TN, USA. Environmental Science & Technology 40:2108-2113.

87. Stucki, J. W., and J. E. Kostka. 2006. Microbial reduction of iron in smectite. Comptes Rendus Geoscience 338:468-475.

88. Sung, Y., K. F. Fletcher, K. M. Ritalaliti, R. P. Apkarian, N. Ramos-Hernandez, R. A. Sanford, N. M. Mesbah, and F. E. Loffler. 2006. Geobacter lovleyi sp nov strain SZ, a novel metal-reducing and tetrachloroethene-dechlorinating bacterium. Applied and Environmental Microbiology 72:2775-2782.

89. Tan, H., O. K. Ezekoye, J. Van Der Schalie, M. W. Horn, A. Lakhtakia, J. Xu, and W. D. Burgos. 2006. Biological reduction of nanoengineered iron(III) oxide sculptured thin films. Environmental Science & Technology 40:5490-5495.

90. Tartakovsky, A. M., and P. Meakin. 2006. Pore scale modeling of immiscible and miscible fluid flows using smoothed particle hydrodynamics. Advances In Water Resources 29:1464-1478.

91. Toner, B., A. Manceau, S. M. Webb, and G. Sposito. 2006. Zinc sorption to biogenic hexagonal-birnessite particles within a hydrated bacterial biofilm. Geochimica Et Cosmochimica Acta 70:27-43.

92. Turner, N. B., J. N. Ryan, and J. E. Saiers. 2006. Effect of desorption kinetics on colloid-facilitated transport of contaminants: Cesium, strontium, and illite colloids. Water Resources Research 42.

93. van der Lelie, D., C. Lesaulnier, S. McCorkle, J. Geets, S. Taghavi, and J. Dunn. 2006. Use of single-point genome signature tags as a universal tagging method for microbial genome surveys. Applied and Environmental Microbiology 72:2092-2101.

94. Van Trump, J. I., Y. Sun, and J. D. Coates. 2006. Microbial interactions with humic substances, p. 55-96, Advances in Applied Microbiology, Vol 60, vol. 60. Elsevier Academic Press Inc, San Diego.

95. Vargha, M., Z. Takats, A. Konopka, and C. H. Nakatsu. 2006. Optimization of MALDI-TOF MS for strain level differentiation of Arthrobacter isolates. Journal of Microbiological Methods 66:399-409.

96. Walker, C. B., S. S. Stolyar, N. Pinel, H. C. B. Yen, Z. L. He, J. Z. Zhou, J. D. Wall, and D. A. Stahl. 2006. Recovery of temperate Desulfovibrio vulgaris bacteriophage using a novel host strain. Environmental Microbiology 8:1950-1959.

97. Wall, J. D., and L. R. Krumholz. 2006. Uranium reduction. Annual Review of Microbiology 60:149-166.

98. Wander, M. C. F., S. Kerisit, K. M. Rosso, and M. A. A. Schoonen. 2006. Kinetics of triscarbonato uranyl reduction by aqueous ferrous iron: A theoretical study. Journal of Physical Chemistry A 110:9691-9701.

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