R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|7484977|pir||T00565 geranylgeranyl-diphosphate geranylgeranyltransferase I
beta chain homolog F12L6.21 - Arabidopsis thaliana
>gi|3355484|gb|AAC27846.1| (AC004218) putative geranylgeranyl
transferase type I beta subunit [Arabidopsis thaliana]
Length = 375
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 375
0 150 300
Plus Strand HSPs:
Score = 283 (99.6 bits), Expect = 7.7e-24, P = 7.7e-24
Identities = 51/73 (69%), Positives = 58/73 (79%), Frame = +2
Query: 5 AFWIGAVLRILGGCKFVDSKALRGFLLSCQYKYGGFGKFPGEYPDLYHSYYGVTAFSLLE 184
AFWIGAVL+++GG +D ALR FL+SCQ KYGGF KFPG+ PDLYHSYYG TAFSLLE
Sbjct: 295 AFWIGAVLKLIGGDALIDKMALRKFLMSCQSKYGGFSKFPGQLPDLYHSYYGYTAFSLLE 354
Query: 185 ESALKSLCSELGI 223
E L LC ELG+
Sbjct: 355 EQGLSPLCPELGL 367
>gi|11878247|gb|AAG40865.1|AF311225_1 (AF311225) geranylgeranyltransferase beta
subunit [Arabidopsis thaliana]
Length = 376
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 376
0 150 300
Plus Strand HSPs:
Score = 277 (97.5 bits), Expect = 3.3e-23, P = 3.3e-23
Identities = 50/73 (68%), Positives = 57/73 (78%), Frame = +2
Query: 5 AFWIGAVLRILGGCKFVDSKALRGFLLSCQYKYGGFGKFPGEYPDLYHSYYGVTAFSLLE 184
AFWIGAVL+++GG +D ALR FL+SCQ KYGGF KFPG+ PDLYHSYYG TAFSLLE
Sbjct: 296 AFWIGAVLKLIGGDALIDKMALRKFLMSCQSKYGGFSKFPGQLPDLYHSYYGYTAFSLLE 355
Query: 185 ESALKSLCSELGI 223
E LC ELG+
Sbjct: 356 EQGSSPLCPELGL 368
>gi|7510015|pir||T27022 hypothetical protein Y48E1B.3 - Caenorhabditis elegans
>gi|3925263|emb|CAB07699.1| (Z93393) contains similarity to Pfam
domain: PF00432 (Prenyltransferase and squalene oxidase repeat),
Score=97.2, E-value=8.4e-27, N=5~cDNA EST yk82a2.3 comes from this
gene~cDNA EST yk82a2.5 comes from this gene~cDNA EST yk65d5.3 comes
from this gene~>
Length = 360
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 360
0 150 300
Plus Strand HSPs:
Score = 158 (55.6 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 33/76 (43%), Positives = 46/76 (60%), Frame = +2
Query: 5 AFWIGAVLRILGGCKFVDSKALRGFLLSCQYKY-GGFGKFP--GEYPDLYHSYYGVTAFS 175
AFWIGA L+IL V + LR FL+ CQ+ + GGF K+P G Y D+ H+Y+ + A S
Sbjct: 271 AFWIGATLKILNAYHLVSKQHLREFLMICQHPHIGGFCKYPEPGGYSDILHTYFSIAALS 330
Query: 176 LLEESALKSLCSELGI 223
LL E A+ + L +
Sbjct: 331 LLGEPAVNPVHPSLNV 346
>gi|4826900 ref|NP_005014.1| protein geranylgeranyltransferase type I, beta
subunit [Homo sapiens] >gi|1730526|sp|P53609|PGT1_HUMAN
GERANYLGERANYL TRANSFERASE TYPE I BETA SUBUNIT (TYPE I PROTEIN
GERANYL-GERANYLTRANSFERASE BETA SUBUNIT) (GGTASE-I-BETA)
>gi|1082392|pir||A53044 geranylgeranyl-diphosphate
geranylgeranyltransferase (EC 2.5.1.32) I beta chain - human
>gi|466491|gb|AAA35888.1| (L25441) geranylgeranyltransferase type I
beta-subunit [Homo sapiens]
Length = 377
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 377
0 150 300
Plus Strand HSPs:
Score = 144 (50.7 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 29/89 (32%), Positives = 50/89 (56%), Frame = +2
Query: 5 AFWIGAVLRILGGCKFVDSKALRGFLLSCQYKY-GGFGKFPGEYPDLYHSYYGVTAFSLL 181
+FW+GA L++L ++ + + R ++LS Q + GGF K+P +PD H+Y+G+ SL+
Sbjct: 273 SFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLM 332
Query: 182 EESALKSLCSELGIH*KCCTGTLA*IQKW 268
EES + + L + + L Q W
Sbjct: 333 EESGICKVHPALNVSTRTSERLLDLHQSW 361
>gi|11416535 ref|XP_003742.1| protein geranylgeranyltransferase type I, beta
subunit [Homo sapiens]
Length = 377
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 377
0 150 300
Plus Strand HSPs:
Score = 144 (50.7 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 29/89 (32%), Positives = 50/89 (56%), Frame = +2
Query: 5 AFWIGAVLRILGGCKFVDSKALRGFLLSCQYKY-GGFGKFPGEYPDLYHSYYGVTAFSLL 181
+FW+GA L++L ++ + + R ++LS Q + GGF K+P +PD H+Y+G+ SL+
Sbjct: 273 SFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLM 332
Query: 182 EESALKSLCSELGIH*KCCTGTLA*IQKW 268
EES + + L + + L Q W
Sbjct: 333 EESGICKVHPALNVSTRTSERLLDLHQSW 361
>gi|1730527|sp|P53610|PGT1_RAT GERANYLGERANYL TRANSFERASE TYPE I BETA SUBUNIT
(TYPE I PROTEIN GERANYL-GERANYLTRANSFERASE BETA SUBUNIT)
(GGTASE-I-BETA) >gi|1083676|pir||B53044 geranylgeranyl-diphosphate
geranylgeranyltransferase (EC 2.5.1.32) I beta chain - rat
>gi|474887|gb|AAA17756.1| (L24116) geranylgeranyltransferase type I
[Rattus norvegicus]
Length = 377
Frame 2 hits (HSPs): _________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 377
0 150 300
__________________
Annotated Domains:
Entrez metal-binding site: ZINC (BY SIMILARITY) 269
Entrez metal-binding site: ZINC (BY SIMILARITY) 271
Entrez metal-binding site: ZINC (BY SIMILARITY) 321
PFAM prenyltrans: Prenyltransferase and squal 142..186
PFAM prenyltrans: Prenyltransferase and squal 191..234
PFAM prenyltrans: Prenyltransferase and squal 240..284
PFAM prenyltrans: Prenyltransferase and squal 289..333
PRODOM PD014117: PGT1(2) 20..97
PRODOM PD191482: PGT1(2) 99..118
PRODOM PD151370: PFTB(5) PGTB(3) O93830(2) 120..199
PRODOM PD002795: PFTB(5) PGTB(3) PGT1(2) 204..299
PRODOM PD187083: PGT1(2) O18197(1) Q24172(1) 306..356
PRODOM PD040759: PGT1_RAT 358..376
__________________
Plus Strand HSPs:
Score = 142 (50.0 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 25/65 (38%), Positives = 43/65 (66%), Frame = +2
Query: 5 AFWIGAVLRILGGCKFVDSKALRGFLLSCQYKY-GGFGKFPGEYPDLYHSYYGVTAFSLL 181
+FW+GA L++L ++ + + R ++LS Q + GGF K+P +PD H+Y+G+ SL+
Sbjct: 273 SFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLM 332
Query: 182 EESAL 196
EES +
Sbjct: 333 EESGI 337
>gi|11422818 ref|XP_001495.1| Rab geranylgeranyltransferase, beta subunit [Homo
sapiens]
Length = 291
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | | 291
0 50 100 150 200 250
Plus Strand HSPs:
Score = 134 (47.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 25/66 (37%), Positives = 42/66 (63%), Frame = +2
Query: 5 AFWIGAVLRILGGCKFVDSKALRGFLLSCQ-YKYGGFGKFPGEYPDLYHSYYGVTAFSLL 181
++W+ A L+I+G ++D + LR F+L+CQ + GGF PG+ D +H+ +G+ SLL
Sbjct: 202 SWWVLASLKIIGRLHWIDREKLRNFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLL 261
Query: 182 EESALK 199
E +K
Sbjct: 262 GEEQIK 267
>gi|6981456 ref|NP_037152.1| rab geranylgeranyl transferase componenet, subunit
beta [Rattus sp.] >gi|730317|sp|Q08603|PGTB_RAT GERANYLGERANYL
TRANSFERASE TYPE II BETA SUBUNIT (RAB GERANYLGERANYLTRANSFERASE
BETA SUBUNIT) (RAB GERANYL-GERANYLTRANSFERASE BETA SUBUNIT) (RAB GG
TRANSFERASE BETA) (RAB GGTASE BETA) >gi|477680|pir||B45977 Rab
geranylgeranyl transferase component B beta subunit - rat
>gi|7546396|pdb|1DCE|B Chain B, Crystal Structure Of Rab
Geranylgeranyltransferase From Rat Brain >gi|7546398|pdb|1DCE|D
Chain D, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain >gi|310208|gb|AAA41999.1| (L10416) rab geranylgeranyl
transferase beta subunit [Rattus norvegicus]
>gi|385477|gb|AAB27019.1| (S62097) Rab geranylgeranyl transferase
component B beta subunit, Rab GG transferase component B beta
subunit [rats, brain, Peptide, 331 aa] [Rattus sp.]
Length = 331
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 331
0 150 300
Plus Strand HSPs:
Score = 134 (47.2 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 25/66 (37%), Positives = 42/66 (63%), Frame = +2
Query: 5 AFWIGAVLRILGGCKFVDSKALRGFLLSCQ-YKYGGFGKFPGEYPDLYHSYYGVTAFSLL 181
++W+ A L+I+G ++D + LR F+L+CQ + GGF PG+ D +H+ +G+ SLL
Sbjct: 242 SWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLL 301
Query: 182 EESALK 199
E +K
Sbjct: 302 GEEQIK 307
>gi|7444150|pir||G02431 geranylgeranyl transferase type II beta-subunit - human
>gi|1216504|gb|AAA91473.1| (U49245) geranylgeranyl transferase type
II beta-subunit [Homo sapiens]
Length = 331
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 331
0 150 300
Plus Strand HSPs:
Score = 134 (47.2 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 25/66 (37%), Positives = 42/66 (63%), Frame = +2
Query: 5 AFWIGAVLRILGGCKFVDSKALRGFLLSCQ-YKYGGFGKFPGEYPDLYHSYYGVTAFSLL 181
++W+ A L+I+G ++D + LR F+L+CQ + GGF PG+ D +H+ +G+ SLL
Sbjct: 242 SWWVLASLKIIGRLHWIDREKLRNFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLL 301
Query: 182 EESALK 199
E +K
Sbjct: 302 GEEQIK 307
>gi|2506788|sp|P53611|PGTB_HUMAN GERANYLGERANYL TRANSFERASE TYPE II BETA
SUBUNIT (RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT) (RAB
GERANYL-GERANYLTRANSFERASE BETA SUBUNIT) (RAB GG TRANSFERASE BETA)
(RAB GGTASE BETA) >gi|1332508|emb|CAA66638.1| (X98001)
geranylgeranyl transferase II [Homo sapiens]
Length = 331
Frame 2 hits (HSPs): ___________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 331
0 150 300
__________________
Annotated Domains:
DOMO DM02620: 1..29
DOMO DM01266: 31..324
Entrez Domain: REPEAT-RICH REGION. 66..302
Entrez Repetitive region: APPROXIMATE. 66..108
Entrez Repetitive region: APPROXIMATE. 118..157
Entrez Repetitive region: APPROXIMATE. 162..205
Entrez Repetitive region: APPROXIMATE. 213..253
Entrez Repetitive region: APPROXIMATE. 258..302
Entrez metal-binding site: ZINC (BY SIMILARITY) 238
Entrez metal-binding site: ZINC (BY SIMILARITY) 240
Entrez metal-binding site: ZINC (BY SIMILARITY) 290
PFAM prenyltrans: Prenyltransferase and squal 66..109
PFAM prenyltrans: Prenyltransferase and squal 114..157
PFAM prenyltrans: Prenyltransferase and squal 162..205
PFAM prenyltrans: Prenyltransferase and squal 210..253
PFAM prenyltrans: Prenyltransferase and squal 258..302
PRODOM PD150761: PGTB(3) BET2(1) PFTB(1) 17..77
PRODOM PD151370: PFTB(5) PGTB(3) O93830(2) 83..173
PRODOM PD002795: PFTB(5) PGTB(3) PGT1(2) 175..269
PRODOM PD160317: PGTB(3) BET2(1) O93830(1) 271..321
__________________
Plus Strand HSPs:
Score = 134 (47.2 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 25/66 (37%), Positives = 42/66 (63%), Frame = +2
Query: 5 AFWIGAVLRILGGCKFVDSKALRGFLLSCQ-YKYGGFGKFPGEYPDLYHSYYGVTAFSLL 181
++W+ A L+I+G ++D + LR F+L+CQ + GGF PG+ D +H+ +G+ SLL
Sbjct: 242 SWWVLASLKIIGRLHWIDREKLRNFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLL 301
Query: 182 EESALK 199
E +K
Sbjct: 302 GEEQIK 307
>gi|4759018 ref|NP_004573.1| Rab geranylgeranyltransferase, beta subunit [Homo
sapiens] >gi|1552549|emb|CAA69383.1| (Y08201) rab geranylgeranyl
transferase [Homo sapiens]
Length = 331
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 331
0 150 300
Plus Strand HSPs:
Score = 134 (47.2 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 25/66 (37%), Positives = 42/66 (63%), Frame = +2
Query: 5 AFWIGAVLRILGGCKFVDSKALRGFLLSCQ-YKYGGFGKFPGEYPDLYHSYYGVTAFSLL 181
++W+ A L+I+G ++D + LR F+L+CQ + GGF PG+ D +H+ +G+ SLL
Sbjct: 242 SWWVLASLKIIGRLHWIDREKLRNFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLL 301
Query: 182 EESALK 199
E +K
Sbjct: 302 GEEQIK 307
>gi|4927184|gb|AAD33042.1|AF133269_1 (AF133269) geranylgeranyl transferase type
II beta-subunit [Drosophila melanogaster]
>gi|7295883|gb|AAF51183.1| (AE003581) betaggt-II gene product
[Drosophila melanogaster]
Length = 347
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 347
0 150 300
Plus Strand HSPs:
Score = 134 (47.2 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 26/68 (38%), Positives = 43/68 (63%), Frame = +2
Query: 5 AFWIGAVLRILGGCKFVDSKALRGFLLSCQ-YKYGGFGKFPGEYPDLYHSYYGVTAFSLL 181
++W+ A L I+G ++ S+ L+ F+LSCQ + GGF G PD++H+ +G+ SLL
Sbjct: 256 SWWVLASLTIMGRLHWISSEKLQQFILSCQDTETGGFSDRTGNMPDIFHTLFGIGGLSLL 315
Query: 182 EESALKSL 205
S LK++
Sbjct: 316 GHSGLKAI 323
>gi|2120012|pir||I49116 geranylgeranyl transferase beta subunit - mouse
(fragment)
Length = 304
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | || 304
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 130 (45.8 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 25/66 (37%), Positives = 42/66 (63%), Frame = +2
Query: 5 AFWIGAVLRILGGCKFVDSKALRGFLLSCQ-YKYGGFGKFPGEYPDLYHSYYGVTAFSLL 181
++W+ A L+I+G ++ S+ LR F+L+CQ + GGF PG+ D +H+ +G+ SLL
Sbjct: 215 SWWVLASLKIIGRLHWIVSEKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLL 274
Query: 182 EESALK 199
E +K
Sbjct: 275 GEEQIK 280
>gi|6755264 ref|NP_035361.1| RAB geranylgeranyl transferase, b subunit [Mus
musculus] >gi|1730529|sp|P53612|PGTB_MOUSE GERANYLGERANYL
TRANSFERASE TYPE II BETA SUBUNIT (RAB GERANYLGERANYLTRANSFERASE
BETA SUBUNIT) (RAB GERANYL-GERANYLTRANSFERASE BETA SUBUNIT) (RAB GG
TRANSFERASE BETA) (RAB GGTASE BETA) >gi|7444151|pir||JC6177
geranylgeranyl-diphosphate geranylgeranyltransferase (EC 2.5.1.32)
beta chain - mouse >gi|1345082|gb|AAB01502.1| (U12922)
geranylgeranyl transferase beta subunit [Mus musculus]
Length = 339
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 339
0 150 300
Plus Strand HSPs:
Score = 130 (45.8 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 25/66 (37%), Positives = 42/66 (63%), Frame = +2
Query: 5 AFWIGAVLRILGGCKFVDSKALRGFLLSCQ-YKYGGFGKFPGEYPDLYHSYYGVTAFSLL 181
++W+ A L+I+G ++ S+ LR F+L+CQ + GGF PG+ D +H+ +G+ SLL
Sbjct: 250 SWWVLASLKIIGRLHWIVSEKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLL 309
Query: 182 EESALK 199
E +K
Sbjct: 310 GEEQIK 315
>gi|1171242|gb|AAC46971.1| (U43587) geranylgeranyl transferase beta-subunit
type I [Drosophila melanogaster]
Length = 395
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 395
0 150 300
Plus Strand HSPs:
Score = 125 (44.0 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 29/74 (39%), Positives = 39/74 (52%), Frame = +2
Query: 5 AFWIGAVLRILGGCKFVDSKALRGFLLSCQYKY-GGFGKFPGEYPDLYHSYYGVTAFSLL 181
+FWIGA L IL G + D R F+LS Q K GGF K+P PD +H+Y G+ +
Sbjct: 263 SFWIGASLCILNGFELTDYARNREFILSTQDKLIGGFAKWPQATPDPFHTYLGLCGLAFT 322
Query: 182 EESALKSLCSELGI 223
E L + L +
Sbjct: 323 GEPGLSPVNPSLNM 336
>gi|1171244|gb|AAC46972.1| (U43588) geranylgeranyl transferase beta-subunit
type I [Drosophila melanogaster] >gi|7296904|gb|AAF52177.1|
(AE003608) betaggt-I gene product [Drosophila melanogaster]
Length = 395
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 395
0 150 300
Plus Strand HSPs:
Score = 124 (43.7 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 29/74 (39%), Positives = 39/74 (52%), Frame = +2
Query: 5 AFWIGAVLRILGGCKFVDSKALRGFLLSCQYKY-GGFGKFPGEYPDLYHSYYGVTAFSLL 181
+FWIGA L IL G + D R F+LS Q K GGF K+P PD +H+Y G+ +
Sbjct: 263 SFWIGASLCILDGFELTDYARNREFILSTQDKLIGGFAKWPQATPDPFHTYLGLCGLAFT 322
Query: 182 EESALKSLCSELGI 223
E L + L +
Sbjct: 323 GEPGLSPVNPSLNM 336
>gi|1586936|prf||2205245A geranylgeranyltransferase [Drosophila melanogaster]
Length = 395
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 395
0 150 300
Plus Strand HSPs:
Score = 124 (43.7 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 29/74 (39%), Positives = 39/74 (52%), Frame = +2
Query: 5 AFWIGAVLRILGGCKFVDSKALRGFLLSCQYKY-GGFGKFPGEYPDLYHSYYGVTAFSLL 181
+FWIGA L IL G + D R F+LS Q K GGF K+P PD +H+Y G+ +
Sbjct: 263 SFWIGASLCILDGFELTDYARNREFILSTQDKLIGGFAKWPQATPDPFHTYLGLCGLAFT 322
Query: 182 EESALKSLCSELGI 223
E L + L +
Sbjct: 323 GEPGLSPVNPSLNM 336
>gi|416853|sp|P32434|CWG2_SCHPO TYPE I PROTEIN GERANYLGERANYLTRANSFERASE BETA
SUBUNIT (TYPE I PROTEIN GERANYL-GERANYLTRANSFERASE BETA SUBUNIT)
(GGTASE-I-BETA) (PGGT) >gi|542213|pir||S41686
geranylgeranyltransferase type I (EC 2.5.1.-) beta chain - fission
yeast (Schizosaccharomyces pombe) >gi|396477|emb|CAA78143.1|
(Z12155) dimethylallyltransferase [Schizosaccharomyces pombe]
>gi|7453046|emb|CAB86347.1| (AL163071) type i protein
geranylgeranyltransferase beta subunit [Schizosaccharomyces pombe]
Length = 355
Frame 2 hits (HSPs): ___________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 355
0 150 300
__________________
Annotated Domains:
DOMO DM01266: 16..347
Entrez metal-binding site: ZINC (BY SIMILARITY) 260
Entrez metal-binding site: ZINC (BY SIMILARITY) 262
Entrez metal-binding site: ZINC (BY SIMILARITY) 312
PFAM prenyltrans: Prenyltransferase and squal 117..163
PFAM prenyltrans: Prenyltransferase and squal 167..210
PFAM prenyltrans: Prenyltransferase and squal 232..275
PFAM prenyltrans: Prenyltransferase and squal 280..324
PRODOM PD014117: PGT1(2) 5..82
PRODOM PD215002: CWG2_SCHPO 84..179
PRODOM PD002795: PFTB(5) PGTB(3) PGT1(2) 181..289
PRODOM PD130619: CWG2_SCHPO 291..354
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 107..128
__________________
Plus Strand HSPs:
Score = 123 (43.3 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 23/72 (31%), Positives = 42/72 (58%), Frame = +2
Query: 5 AFWIGAVLRILGGCKFVDSKALRGFLL-SCQYKYGGFGKFPGEYPDLYHSYYGVTAFSLL 181
A+W+ + L++L F+D L +LL Q+ GGF K PGE+PD+ HS G+ A +
Sbjct: 264 AYWVLSSLKLLDALPFIDGGELEKYLLLHAQHALGGFSKTPGEFPDVLHSALGLYAMAYQ 323
Query: 182 EESALKSLCSEL 217
++ + + +++
Sbjct: 324 DDKSFPKVNADI 335
>gi|12229694|sp|O93830|BET2_CANAL TYPE II PROTEINS GERANYLGERANYLTRANSFERASE
BETA SUBUNIT (TYPE II PROTEIN GERANYL-GERANYLTRANSFERASE BETA
SUBUNIT) (GGTASE-II-BETA) (PGGT) (YPT1/SEC4 PROTEINS
GERANYLGERANYLTRANSFERASE BETA SUBUNIT) >gi|4049601|dbj|BAA35193.1|
(AB021171) Beta subunit of geranylgeranyl transferase type2
[Candida albicans]
Length = 341
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 341
0 150 300
Plus Strand HSPs:
Score = 112 (39.4 bits), Expect = 0.00023, P = 0.00023
Identities = 22/61 (36%), Positives = 36/61 (59%), Frame = +2
Query: 5 AFWIGAVLRILGGCKFVDSKALRGFLLSCQ-YKYGGFGKFPGEYPDLYHSYYGVTAFSLL 181
++W+ + L IL +VD K L F+L+CQ + GGF PG D+YH+ + + SL+
Sbjct: 253 SWWVLSSLSILKRKNWVDLKILENFILTCQDLENGGFSDRPGNQTDVYHTCFAIAGLSLI 312
Query: 182 E 184
+
Sbjct: 313 D 313
>gi|9759388|dbj|BAB10039.1| (AB007727) Rab geranylgeranyltransferase, beta
subunit [Arabidopsis thaliana]
Length = 313
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | | | 313
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 101 (35.6 bits), Expect = 0.015, P = 0.015
Identities = 21/66 (31%), Positives = 36/66 (54%), Frame = +2
Query: 5 AFWIGAVLRILGGCKFVDSKALRGFLLSCQ-YKYGGFGKFPGEYPDLYHSYYGVTAFSLL 181
++W+ + L ++ ++D L F+L CQ GG P + D++H+Y+GV SLL
Sbjct: 228 SWWVLSSLIMIDRVHWIDKAKLVKFILDCQDLDNGGISDRPEDAVDIFHTYFGVAGLSLL 287
Query: 182 EESALK 199
E +K
Sbjct: 288 EYPGVK 293
>gi|227802|prf||1711436A bet2 gene [Saccharomyces cerevisiae]
Length = 322
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | | | 322
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.13, P = 0.12
Identities = 19/60 (31%), Positives = 34/60 (56%), Frame = +2
Query: 5 AFWIGAVLRILGGCKFVDSKALRGFLLSCQ-YKYGGFGKFPGEYPDLYHSYYGVTAFSLL 181
++W+ + L I+G +++ + L F+L CQ K GG P D++H+ +GV SL+
Sbjct: 238 SWWVLSSLAIIGRLDWINYEKLTEFILKCQDEKKGGISDRPENEVDVFHTVFGVAGLSLM 297
>gi|6325434 ref|NP_015502.1| Geranylgeranyltransferase Type II beta subunit;
Bet2p [Saccharomyces cerevisiae] >gi|1352074|sp|P20133|BET2_YEAST
TYPE II PROTEINS GERANYLGERANYLTRANSFERASE BETA SUBUNIT (TYPE II
PROTEIN GERANYL-GERANYLTRANSFERASE BETA SUBUNIT) (GGTASE-II-BETA)
(PGGT) (YPT1/SEC4 PROTEINS GERANYLGERANYLTRANSFERASE BETA SUBUNIT)
>gi|2120011|pir||S59834 probable protein prenyltransferase (EC
2.5.1.-) BET2 - yeast (Saccharomyces cerevisiae)
>gi|786324|gb|AAB68110.1| (U25842) Protein
Geranyl-geranyltransferase beta subunit (Swiss Prot. accession
number P20133; P32433) [Saccharomyces cerevisiae]
Length = 325
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | | | 325
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.14, P = 0.13
Identities = 19/60 (31%), Positives = 34/60 (56%), Frame = +2
Query: 5 AFWIGAVLRILGGCKFVDSKALRGFLLSCQ-YKYGGFGKFPGEYPDLYHSYYGVTAFSLL 181
++W+ + L I+G +++ + L F+L CQ K GG P D++H+ +GV SL+
Sbjct: 238 SWWVLSSLAIIGRLDWINYEKLTEFILKCQDEKKGGISDRPENEVDVFHTVFGVAGLSLM 297
>gi|808857|gb|AAA66939.1| (M29585) unknown protein [Saccharomyces cerevisiae]
Length = 325
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | | | 325
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.14, P = 0.13
Identities = 19/60 (31%), Positives = 34/60 (56%), Frame = +2
Query: 5 AFWIGAVLRILGGCKFVDSKALRGFLLSCQ-YKYGGFGKFPGEYPDLYHSYYGVTAFSLL 181
++W+ + L I+G +++ + L F+L CQ K GG P D++H+ +GV SL+
Sbjct: 238 SWWVLSSLAIIGRLDWINYEKLTEFILKCQDEKKGGISDRPENEVDVFHTVFGVAGLSLM 297
>gi|1172450|sp|P41992|PFTB_CAEEL PROBABLE PROTEIN FARNESYLTRANSFERASE BETA
SUBUNIT (CAAX FARNESYLTRANSFERASE BETA SUBUNIT) (RAS PROTEINS
PRENYLTRANSFERASE BETA) (FTASE-BETA) >gi|7494807|pir||T15296
hypothetical protein B0280.1 - Caenorhabditis elegans
>gi|500763|gb|AAA19080.1| (U10438) similar to prenyltransferase
BET2 [Caenorhabditis elegans]
Length = 325
Frame 2 hits (HSPs): _______
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 325
0 50 100 150 200 250 300
__________________
Annotated Domains:
DOMO DM02620: 1..35
DOMO DM01266: 37..324
Entrez metal-binding site: ZINC (BY SIMILARITY) 244
Entrez metal-binding site: ZINC (BY SIMILARITY) 246
PFAM prenyltrans: Prenyltransferase and squal 72..115
PFAM prenyltrans: Prenyltransferase and squal 120..163
PFAM prenyltrans: Prenyltransferase and squal 168..211
PFAM prenyltrans: Prenyltransferase and squal 216..259
PFAM prenyltrans: Prenyltransferase and squal 264..318
PRODOM PD130614: PFTB_CAEEL 1..22
PRODOM PD150761: PGTB(3) BET2(1) PFTB(1) 24..83
PRODOM PD151370: PFTB(5) PGTB(3) O93830(2) 89..179
PRODOM PD002795: PFTB(5) PGTB(3) PGT1(2) 182..275
PRODOM PD130617: PFTB_CAEEL 277..324
__________________
Plus Strand HSPs:
Score = 90 (31.7 bits), Expect = 0.45, P = 0.36
Identities = 18/43 (41%), Positives = 28/43 (65%), Frame = +2
Query: 5 AFWIGAVLRILGGCKFVDSKALRGFLLSCQY-KYGGFGKFPGE 130
++W+ A L ILG F+DS A++ F+ +CQ + GGF PG+
Sbjct: 248 SWWVLASLAILGRLNFIDSDAMKKFIYACQDDETGGFADRPGD 290
>gi|7300143|gb|AAF55310.1| (AE003713) CG17565 gene product [Drosophila
melanogaster]
Length = 419
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 419
0 150 300
Plus Strand HSPs:
Score = 91 (32.0 bits), Expect = 0.48, P = 0.38
Identities = 28/83 (33%), Positives = 41/83 (49%), Frame = +2
Query: 5 AFWIGAVLRI----LGGCK------FVDSKALRGF-LLSCQYKYGGFGKFPGEYPDLYHS 151
+FW+GA + I L G D +AL+ + LL CQ + GG PG+ DLYH+
Sbjct: 291 SFWVGATIPITQATLSGVDKQMEHTLFDVEALQEYILLCCQKQSGGLIDKPGKPQDLYHT 350
Query: 152 YYGVTAFSLLEESALKSLCSELG 220
Y ++ S+ + S S LG
Sbjct: 351 CYTLSGVSIAQHSECASSPQVLG 373
>gi|10998148|dbj|BAB03119.1| (AP002040) geranylgeranyl transferase beta subunit
[Arabidopsis thaliana] >gi|12322017|gb|AAG51055.1|AC069473_17
(AC069473) geranylgeranyl transferase type II beta subunit,
putative; 34992-36712 [Arabidopsis thaliana]
Length = 317
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | | | 317
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.75, P = 0.53
Identities = 19/68 (27%), Positives = 36/68 (52%), Frame = +2
Query: 5 AFWIGAVLRILGGCKFVDSKALRGFLLSCQ-YKYGGFGKFPGEYPDLYHSYYGVTAFSLL 181
++W+ + L ++ +++ L F+L Q GG P D++H+Y+GV SLL
Sbjct: 232 SWWVLSSLIMIDRVHWIEKAKLVKFILDSQDMDNGGISDRPSYTVDIFHTYFGVAGLSLL 291
Query: 182 EESALKSL 205
E +K++
Sbjct: 292 EYPGVKTI 299
>gi|6320113 ref|NP_010193.1| beta subunit of farnesyltransferase; Ram1p
[Saccharomyces cerevisiae] >gi|2506787|sp|P22007|RAM1_YEAST PROTEIN
FARNESYLTRANSFERASE BETA SUBUNIT (CAAX FARNESYLTRANSFERASE BETA
SUBUNIT) (RAS PROTEINS PRENYLTRANSFERASE BETA) (FTASE-BETA)
>gi|2144967|pir||BVBYDP probable protein prenyltransferase (EC
2.5.1.-) RAM1 - yeast (Saccharomyces cerevisiae)
>gi|171420|gb|AAA34579.1| (M22753) DPR1 protein [Saccharomyces
cerevisiae] >gi|1199557|emb|CAA64921.1| (X95644) ORF 2412
[Saccharomyces cerevisiae] >gi|1431120|emb|CAA98656.1| (Z74138) ORF
YDL090c [Saccharomyces cerevisiae]
Length = 431
Frame 2 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | 431
0 150 300
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 2.8, P = 0.94
Identities = 22/67 (32%), Positives = 34/67 (50%), Frame = +2
Query: 5 AFWIG---AVLRILGGCKFVDSKALRGFLL-SCQYK-YGGFGKFPGEYPDLYHSYYGVTA 169
+FW+G A+L G + + ALR ++L CQ K G PG + D YH+ Y +
Sbjct: 311 SFWVGGSAAILEAFGYGQCFNKHALRDYILYCCQEKEQPGLRDKPGAHSDFYHTNYCLLG 370
Query: 170 FSLLEES 190
++ E S
Sbjct: 371 LAVAESS 377
>gi|2564437|gb|AAC28162.1| (U91393) mariner transposase [Glossina palpalis]
Length = 150
Frame -1 hits (HSPs): ___________
Frame -3 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | 150
0 50 100
Minus Strand HSPs:
Score = 66 (23.2 bits), Expect = 5.4, Sum P(2) = 1.0
Identities = 15/35 (42%), Positives = 20/35 (57%), Frame = -1
Query: 107 HHTYIDKKAKIHVEPYCQQICSPLESLKRLQSKMP 3
HH++++ I E YCQQI E +RLQ K P
Sbjct: 80 HHSFLNPGETITAEKYCQQID---EMHQRLQQKQP 111
Score = 40 (14.1 bits), Expect = 5.4, Sum P(2) = 1.0
Identities = 6/15 (40%), Positives = 10/15 (66%), Frame = -3
Query: 150 EWYRSGYSPGNFPKP 106
+W + +P +FPKP
Sbjct: 46 QWLDADEAPQHFPKP 60
>gi|7444152|pir||T07673 farnesyltranstransferase (EC 2.5.1.29) chain B - tomato
>gi|1815668|gb|AAC49666.1| (U83708) farnesyl protein transferase
subunit B [Lycopersicon esculentum]
Length = 470
Frame 3 hits (HSPs): ______
Frame 2 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | 470
0 150 300 450
Plus Strand HSPs:
Score = 78 (27.5 bits), Expect = 5.9, Sum P(2) = 1.0
Identities = 25/71 (35%), Positives = 38/71 (53%), Frame = +2
Query: 8 FWIGAVLRILG---GCKFVDSKALRGFLLSCQYKYGGFGKFPGEYPDLYHSYYGVTAFSL 178
+W + +LG G K +++ A+ FL CQ K GG+G PG+ P L +Y V +
Sbjct: 73 YWTLHSIALLGESIGGK-LENDAI-DFLTRCQDKDGGYGGGPGQMPHLATTYAAVNSLIT 130
Query: 179 L-EESALKSLCSE 214
L + AL S+ E
Sbjct: 131 LGKPEALSSINRE 143
Score = 40 (14.1 bits), Expect = 5.9, Sum P(2) = 1.0
Identities = 13/46 (28%), Positives = 25/46 (54%), Frame = +3
Query: 306 EALSTNPLLMDFSFLFFHK---FRWIVNFPFHLIVFVILCASIQVIG 437
E S +P + D + F ++ R + + +L +V+LC+ I+V G
Sbjct: 336 ENASHSPKIADTGYEFINRPIAMRPLFD-SMYLQQYVLLCSQIEVGG 381
>gi|7444153|pir||T07605 protein farnesyltransferase (EC 2.5.1.-) beta chain -
tomato >gi|2182815|gb|AAB69757.1| (U75644) farnesyl-protein
transferase beta subunit [Lycopersicon esculentum]
Length = 470
Frame 3 hits (HSPs): ______
Frame 2 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | 470
0 150 300 450
Plus Strand HSPs:
Score = 78 (27.5 bits), Expect = 5.9, Sum P(2) = 1.0
Identities = 25/71 (35%), Positives = 38/71 (53%), Frame = +2
Query: 8 FWIGAVLRILG---GCKFVDSKALRGFLLSCQYKYGGFGKFPGEYPDLYHSYYGVTAFSL 178
+W + +LG G K +++ A+ FL CQ K GG+G PG+ P L +Y V +
Sbjct: 73 YWTLHSIALLGESIGGK-LENDAI-DFLTRCQDKDGGYGGGPGQMPHLATTYAAVNSLIT 130
Query: 179 L-EESALKSLCSE 214
L + AL S+ E
Sbjct: 131 LGKPEALSSINRE 143
Score = 40 (14.1 bits), Expect = 5.9, Sum P(2) = 1.0
Identities = 13/46 (28%), Positives = 25/46 (54%), Frame = +3
Query: 306 EALSTNPLLMDFSFLFFHK---FRWIVNFPFHLIVFVILCASIQVIG 437
E S +P + D + F ++ R + + +L +V+LC+ I+V G
Sbjct: 336 ENASHSPKIADTGYEFINRPIAMRPLFD-SMYLQQYVLLCSQIEVGG 381
>gi|2736437|gb|AAB94216.1| (AF039046) R09B5.9 gene product [Caenorhabditis
elegans]
Length = 66
Frame 2 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | | 66
0 20 40 60
Plus Strand HSPs:
Score = 60 (21.1 bits), Expect = 7.3, P = 1.0
Identities = 11/31 (35%), Positives = 18/31 (58%), Frame = +2
Query: 86 SCQYKYGGFGKFPGEYPDLYHSYYGVTAFSL 178
S Q+ YG +G + G YP +Y Y G+ + +
Sbjct: 17 SAQWGYGPYGGYGGGYPGMYGGY-GMRPYGM 46
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.97
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.346 0.153 0.528
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.351 0.158 0.570
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.359 0.162 0.646
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.343 0.148 0.498
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.350 0.152 0.484
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.352 0.156 0.537
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 157 156 10. 74 3 12 22 0.097 34
30 0.12 36
+2 0 157 156 10. 74 3 12 22 0.097 34
30 0.12 36
+1 0 157 156 10. 74 3 12 22 0.097 34
30 0.12 36
-1 0 157 157 10. 74 3 12 22 0.098 34
30 0.12 36
-2 0 157 156 10. 74 3 12 22 0.097 34
30 0.12 36
-3 0 157 156 10. 74 3 12 22 0.097 34
30 0.12 36
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 31
No. of states in DFA: 598 (59 KB)
Total size of DFA: 193 KB (256 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 150.78u 1.15s 151.93t Elapsed: 00:00:35
Total cpu time: 150.82u 1.20s 152.02t Elapsed: 00:00:35
Start: Wed Feb 6 15:31:15 2002 End: Wed Feb 6 15:31:50 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000