Submitter records for this RefSNP Cluster

NCBI Assay ID	Handle|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss10722868	BCM_SSAHASNP|chr14.NT_026437.10_425319		fwd/B	G/T	aaaattatttttcatcatatcactctcttc	ttataaacctgtgataactaccttatcaat	06/30/03	04/07/04	116	Genomic			unknown
ss14868906	PERLEGEN|PS00253038		fwd/B	G/T	aaaattatttttcatcatatcactctcttc	ttataaacctgtgataactaccttatcaat	11/13/03	04/07/04	120	Genomic			unknown
ss19979152	CSHL-HAPMAP|CSHL-HuFF-200402.chr14.NT_026437.10_425319		fwd/B	G/T	aaaattatttttcatcatatcactctcttc	ttataaacctgtgataactaccttatcaat	02/21/04	03/04/04	120	Genomic			unknown
ss24720692	PERLEGEN|afd0253038		fwd/B	G/T	aaaattatttttcatcatatcactctcttc	ttataaacctgtgataactaccttatcaat	08/10/04	09/13/04	123	Genomic			unknown
ss43651140	ABI|hCV26322989		fwd/B	G/T	aaaattatttttcatcatatcactctcttc	ttataaacctgtgataactaccttatcaat	07/18/05	07/18/05	126	Genomic			unknown
ss65935711	AFFY|SNP_A-1754154		rev/T	A/C	taaggtagttatcacaggtttataa	gaagagagtgatatgatgaaaaata	10/26/06	10/26/06	127	Genomic			unknown
ss69149726	PERLEGEN|PGP00253038		fwd/B	G/T	aaaattatttttcatcatatcactctcttc	ttataaacctgtgataactaccttatcaat	01/30/07	03/31/08	127	Genomic			unknown

Fasta sequence   (Legend)

 TATAGCTATT TTTCTTGAGT TTTTAACTTA TTACATTTAA ATATGTTTAT ATTAACATAT
 AGAAACATAA CTTTTTAATA GGTGTATAGA ATTCCACTTT GTAGATGTTG CATAATGTAA
 TCTCCCCACA AATACAGTTT ATTCTTAGAA TGAATTTAAC ATTACCTATA AAAATTATTT
 TTCATCATAT CACTCTCTTC
 K
 TTATAAACCT GTGATAACTA CCTTATCAAT CCCTAACTTC TCCTGGATAT TCATAATCAA
 CTCCTCACCC ACCCTAAAAA TCCAATATTA TTTTCTTTTT TTTTCTTTTt ttttttttaa
 ttattatact ttaagattta gggtacatgt gcacaatgtg caggttagtt acatatgtat
 acaagtgccc tgctggtgtg ctgtacccac taactcgtca tctagcatta ggtatctctc
 ccaatgctat ccctcccccc ttcccccacc ccacaacagt ccccagagtg tgacattccc
 cttcctgtgt ccatgtgttc tcattgttca attcccacct atgagtgaga atatgcggtg
 tttggttttt tgttcttgcg ataatttact gagaatgatg atttccaatt tcatccatgt
 ccctacaaag gacatgaact catcattttt tatggctgca tagtattcca tggtgtatat
 gtgccacatt ttcttaatcc agtctatcat tgttggacat ttgggttggt tccaagtctt
 tgctattgtg aataatgccg caataaacat acgtgtgcat gtgtctttct agtagcatga
 tttatagtcc tttgggtata aacccagtaa tgggatggct gggtcaaatg gtatttctag
 ttctagatcc ctgaggaatc gccacactga cttccacaat ggttgaacta gtttacagtc
 ccaccaacag tgtaaaagta ttcctatttc tccagatcct ctccagcacc tgttgtttcc
 tgatttttta atgattgcca ttctaactgg tgtgaggtga tatctcattg tggttttgat
 ttgcatttgt ctgatggcca gagatggtga gcattttttc atgtgttttt tggctgcata
 aatgtcttct tttgagaagt gtctgttcgt gtcctttgcc cactttttga tggggtttct
 tgtttttttc ttgtaaattt gtttgagatc attgtagatt ctggatatta gccctttgtc
 agatgagtag gttgtgaaaa ttttctccca ttctgtgggt tgcctgttca ctctgatggt
 agtttctttt gctgtgcaga agctctttag tttaattaga tcccatttgt caattttggc
 ttttgttgcc attgcttttg gtgttttaga catgaagtcc ttacccatgc ctatgtcctg
 aatggtgatg cctaggtttt cttctagggt tttttatggt tttaggtcta acgtttaagt
 ctttaatcca tcttgaatta atttttgtat aaggtgtaag gaagggatcc agtttcagct
 ttctccatat ggctagccag ttttcccagc accatttatt aaatagggaa tcctttcccc
 attgcttgtt tttctcaggt ttgtcaaaga tcagatagtt gtagatatgc ggcgttattt
 ctgagggctc tgttctgctc cattgatcta tatctctgtt ttggtaccag taccatgctg
 ttttggttac tgtagccttg tagtatagtt tgaagtcagg tagcatgatg cctccaactt
 tgttcttttg gcttaggatt gacttggcga tgcgggctct tttttcgttc catacgaact
 ttaaagtagt tttttccaat tctgtgaaga aagtcattgg tagcttgatg gggatggcat
 tgaatttata cattaccttg ggcagtatgg ccattttcat gatattgatt cttcctaccc
 atgagcatgg aatgttcttc catttcttta tatcctcttt tatttcactg agcagtggtt
 tgtagttttc cttgaagagg tccttcacgt cccttgtaag gtggattcct aggtatttta
 ttctctttga agcaattgta aatgggagtt cactcatgat ttggctctct gtttgactgt
 tgttggtgta tgagaatgct tgtgagtttt gtacattgat tttgtatcct gagactttgc
 tgaagttgct tatcagctta aggagatttt gggctgagac aatggggttt tctagatata
 caatcatgtc atctgcaaac agggacaatt tgacttcctc ttttcctaat tgaataccct
 ctatttcctt ctcctgccta attgccctgg ccagaacttc caacactatg ttgaataaga
 gtggtgagag agggcatccc tgtcttgtgc cagttttcaa agggaatgct tccagttttt
 gcccattcag tatgatattg gctgtgggtt tgtcatagat agctcttatt attttgaaat
 acgtcacatc aatacctaat ttattgagag tttttagcat gaaaggttgt tgaattttgt
 caaaggcctt ttctgcatct attgagataa ttatgtggtt tttgtctttg gttctgttta
 tatgctggat tacatttatt gatttgcata tattgaacca gccttgcatc ccagggatga
 agcccacttg atcatggtgg ataagctttt tgatatgctg ctggattcgg tttgccagta
 ttttattgag gatttttgca tcgatgttca tcaaggatat tggtctaaaa ttctcttttt
 ttgttgtgtc tctgcctggc tttggtatca ggatgatgct ggcctcataa aatgagttag
 ggaggattcc ttctttttct attgattgga atagtttcag aaggaatggt accagttcgc
 ccttgtacct ctggtagaat ttgggtgtga atccatctgg tcctggactc tttttggttg
 gtaagctatt gattattgcc acaatttcag ctcctgttat tggtctatgc agagattcaa
 cttcttcctg gtttagtctt gggagagtgt atgtgtcgag gaatttatcc atttcttctg
 gattttctag cttatttgcg tagaggtgtt tgtaggattc tctgatggta gtttgtattt
 ctgtgggatc cgtggtgata tcccctttat cattttttat tgcgtctatt tgattcttct
 ctcttttttc tgtattagtc ttgctagcag tctatcaatt ttgttgatcc tttcaaaaaa
 ccagctcctg gattcattaa ttttttgaag ggttttttgt gtctctattc ccttcagttc
 tgctctgatt ttagttattt cttgccttct gctagctttt gaatgtgttt gctcttgctt
 ttctagttct tttaattgtg atgttagggt gtcaattttg gatttttcct gctttctctt
 gtgggcattt agtgctataa atttccatct acacactgct ttgaatgcat cccagagatt
 ctggtatgtt gtgtctttgt tctcattggt ttcaaagaac atctttattt ctgcattcat
 ttcgttatat acccagtagt cattcaggag caggttgttc agtttccatg tagttgagtg
 gttttgagtg agtttcttaa tcctgagttc tagtttgatt gcactgtggt ctgagagata
 gtttgtgata atttctgttc ttttacattt gctgaggaga gctttacttc caagtatgtg
 gtcaattttg gaataggtgt ggtgtggtgc tgaaagaaat gtatattctg ttgatttggt
 gtggagagtt ctgtagatgt ctattaggtc tgcttggtgc agagctgagt tcaattcctg
 ggtatccttg ttaactttct gtctcgttga tctgtctaat gttgactgtg gggtgttaaa
 gtctcccatt attaatgtgt tagagtctaa gtctctttgt atgtcactaa ggacttgctt
 tatgaatctg ggggttcctg tattgggtgc atatatattt aggatagtta cctcttcttg
 ttgaattgat ccctttacca ttatgtaatg gccttctttg tctcttttga tctgtgttgg
 tttaaagtct gttttatcag agactaggat tgcaacccct gccttttttt gttttccatt
 tgcttggtag atcttcctcc atccttttat tttgagccta tgtgtgtctc tgcacgtgag
 atgggtttcc tgaatacagc acactgatgg gtcttgactc tttatccaat ttgccagtct
 gtgtctttta attggagcat ttagtccatt tacatttaaa gttaatattg ttatgtgtga
 atttgatcct gtcattatga tgttagctgg ttattttgct cattagttga tgcagtttct
 tcctagtctc aatggtcttt acattttggc atgattttgc agcagctggt accagttttt
 cctttccatg tttagtgctt ccttcaggag ctcttttagg gcaggcctgg tggtgaaaaa
 aatctctcag cattcgcttg tctataaagt attttatttc tccttcactt atgaagctta
 gtttggctag atatgaaatt ctggattgaa aattcttttc tttaagaatg ttgaatattg
 gcccccactc tcttctggct tgtagagttt ctgccgagag atctgctgtt agtctgatgg
 gcttcccttt gtgggtaacc caacctttct ctctggctgc ccttaacatt ttttccttca
 tttcaacttt gatgaatctg acaattatgt gtcttggagt tgctcttctc gaggagtatc
 tttgtggcgt tctctgtatt tcctgaatct gaacgttggc ctgccttgct agatttggga
 agttctcttg gacaatatcc tgcagagtgt tttcaacttg gttccattct ccccatcact
 ttcaggtaca ccaatcagac gtagatttgg tctttttaca tagtcccata tttcttggag
 gctttgtttg tttctttcta ttcttttttc tctaaacttg tcttctcgct tcatttcatt
 catttgatct tcaatcactg acaccctttc ttccagttga tcgaatcagc tactgattcc
 tcagggatct agaactagaa ataccatttg acccagccat ctcattactg ggtatatacc
 caaaggacta taaatcatgc tgctataaag ccacatgcac aggtatgttt attgtggcac
 tattcagaat agcaaagact ttgaaccaac ccaaatgtcc aacaatgata gactggatta
 agaaaatgtg gcacatatac accatggaat actatgcagc cataaaaatg atgagttcat
 gtcctttgta gggacatgga tgaaattgga aatcatcact ctcagtaaac tatcacaagg
 acaaaaaacc aaacaccgca tgttctcact cataggcggt aattgaacaa tgagaacata
 tggacacagg aaggggaaca tcacactccg gggactgttg tggggtgggg gaagggggga
 gggatagcat taggagatat acctaatgct aaatgacgag ttagtgggtg cagcacacca
 gcatggcaca tatgtacata tgtaactaac ctgcacattg tgcacgtgta ccctaaaact
 taaagtataa taataataaa aTTAAAAAAA ACATATTTAA ATCTACTTTG TGTCTTTTCT
 ATTAGTAAGG TCTCTTTggc agggcactgt ggctgacacc tataatccca acactttcag
 aggccaagct gggaggctgt cttgaagccg gaagttcaaa acaagccttg gaaacaaaat
 gagacatctt gtcttgatat aaaaaaaaaa aattagccaa agtggtggcg tgcaccttag
 tcccagctac tctggaggct gaggtgggag gattgcttga gccgaggatt ccaaggctgt
 ggtgagctat gatcacacca ctgtacttca gcctgggtga gacagcgaga ctctgtctca
 aataaataaa taaaaaTAAG GTTTCCAGTC AGATATAAAC TATTTCATCT T

GeneView

Integrated Maps:

NCBI Resource Links

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	G/G	G/T	T/T	HWP	G	N	T
ss10722868	HapMap-CEU	European	120	IG	0.233	0.350	0.417	0.050	0.408		0.592
	HapMap-HCB	Asian	90	IG	0.044	0.400	0.556	0.584	0.244		0.756
	HapMap-JPT	Asian	88	IG	0.114	0.455	0.432	1.000	0.341		0.659
	HapMap-YRI	Sub-Saharan African	120	IG		0.050	0.950	1.000	0.025		0.975
	CHMJ	Asian	74	IG					0.230	0.014	0.757
ss14868906	AfAm	African American	12	IG		0.167	0.833	1.000	0.083		0.917
	Caucasian	European	24	IG	0.167	0.500	0.333	1.000	0.417		0.583
	Asian	Asian	10	IG		0.400	0.600	0.584	0.200		0.800
	CEPH	European	12	IG	0.167	0.667	0.167	0.439	0.500		0.500
	PDpanel	Global	46	IG	0.087	0.435	0.478	1.000	0.304		0.696
ss24720692	AFD_EUR_PANEL	European	48	IG	0.333	0.375	0.292	0.251	0.521		0.479
	AFD_AFR_PANEL	African American	46	IG		0.087	0.913	1.000	0.043		0.957
	AFD_CHN_PANEL	Asian	48	IG	0.042	0.375	0.583	1.000	0.229		0.771
ss69149726	HapMap-CEU	European	120	GF	0.233	0.350	0.417		0.408		0.592
	HapMap-HCB	Asian	90	GF	0.044	0.400	0.556		0.244		0.756
	HapMap-JPT	Asian	90	GF	0.111	0.467	0.422		0.344		0.656
	HapMap-YRI	Sub-Saharan African	120	GF		0.050	0.950		0.025		0.975

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
DoubleHit found by:  BCM_SSAHASNP	UNKNOWN	UNKNOWN	UNKNOWN