proteins
| 43 proteins |
U | COG1862 | Preprotein translocase subunit YajC | Help | |
|---|---|---|---|---|---|
| 1 from | query genome Salmonella typhimurium LT2 (Enterobacteriales | Gammaproteobacteria) | ||||
| STM0406 | ||||
152 letters (r) 0
0 764 ||| 1 STM2734 (152) 559
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= STM2734
(152 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
STM2734 298 2e-81
SPy1604 32 0.40
VC1451 30 1.5
TM0024 30 2.3
XF2512 29 2.9
YPO3380 28 5.6
PA3683 28 6.1
HI1109 28 6.5
PAE2362 28 7.3
TVN0985 28 8.5
# >STM2734
# Length = 152
#
# Score = 298 bits (764), Expect = 2e-81
# Identities = 152/152 (100%), Positives = 152/152 (100%)
#
# Query: 1 MTKQSSEYFQLHYCYYLELMTATLHGRADKLMTAIQIISGTAVIADTGLEWVFALPVVVI 60
# MTKQSSEYFQLHYCYYLELMTATLHGRADKLMTAIQIISGTAVIADTGLEWVFALPVVVI
# Sbjct: 1 MTKQSSEYFQLHYCYYLELMTATLHGRADKLMTAIQIISGTAVIADTGLEWVFALPVVVI 60
#
# Query: 61 ATIQLVWQPAIISERASVQSRQYGELLYAGDELTPELIAQKLKTLHHSDSAPFGSLLNPA 120
# ATIQLVWQPAIISERASVQSRQYGELLYAGDELTPELIAQKLKTLHHSDSAPFGSLLNPA
# Sbjct: 61 ATIQLVWQPAIISERASVQSRQYGELLYAGDELTPELIAQKLKTLHHSDSAPFGSLLNPA 120
#
# Query: 121 YKRAAIACGRSDDTKLSFQEKLFAWFAGCLPR 152
# YKRAAIACGRSDDTKLSFQEKLFAWFAGCLPR
# Sbjct: 121 YKRAAIACGRSDDTKLSFQEKLFAWFAGCLPR 152
#
#
# >SPy1604
# Length = 901
#
# Score = 32.3 bits (72), Expect = 0.40
# Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
#
# Query: 28 ADKLMTAIQIISGTAVIADTGLEWVFALPVVVIATIQLVWQPAI-ISERASVQSRQYGEL 86
# AD+ + IIS TA +A+ ++ FA+P+ +Q + I I+ER + +S++ EL
# Sbjct: 587 ADQGTIKLNIISNTAQVAELEIQQTFAIPISADKLLQAEMEAVIDITERQARRSQEKAEL 646
#
#
# >VC1451
# Length = 4558
#
# Score = 30.4 bits (67), Expect = 1.5
# Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
#
# Query: 62 TIQLVWQPAIISERASVQSRQYGELLYAGDELTPELIAQKLKTLHH--SDSAPFGSLLNP 119
# TI+LV P+ IS+ A+V+SR+ +L+ E T + ++L H SD F +++
# Sbjct: 2063 TIELVTYPSEISDTAAVESRKEA-MLWLAKEFTDHINQSNHQSLPHLVSDDGRFTLVISN 2121
#
# Query: 120 AYKRAAIACGRSDDTK 135
# + A G S D +
# Sbjct: 2122 SKHLIAAGNGTSIDAQ 2137
#
#
# >TM0024
# Length = 642
#
# Score = 29.6 bits (65), Expect = 2.3
# Identities = 17/57 (29%), Positives = 26/57 (44%), Gaps = 3/57 (5%)
#
# Query: 44 IADTGLEWVFALPVVVIATIQL--VWQPAIISERASVQSRQYGELLYAGDELTPELI 98
# +A+ GLEWVF P +I + + W P E R Y + + ++ PE I
# Sbjct: 409 LAELGLEWVFDHPFFLILNVAVGGYW-PGYPDETTQFPQRMYIDYIRVYKDMNPETI 464
#
#
# >XF2512
# Length = 179
#
# Score = 29.3 bits (64), Expect = 2.9
# Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
#
# Query: 27 RADKLMTAIQIISGTAVIADTGL---EWVF---ALPVVVIATIQLVWQPAIISERASVQS 80
# R DKL + I ++SG+AVIA G +W+ A+ V + +I LV A ++ S
# Sbjct: 39 RCDKLNSVIGLLSGSAVIASLGQYAPQWMALAGAVTVTIATSINLVAGTAQMARIHSDLR 98
#
# Query: 81 RQYGEL 86
# R++ +L
# Sbjct: 99 RRFSQL 104
#
#
# >YPO3380
# Length = 744
#
# Score = 28.5 bits (62), Expect = 5.6
# Identities = 14/46 (30%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
#
# Query: 101 KLKTLHHSDSAPFGSLLNPAYKRAAIACGRSD-DTKLSFQEKLFAW 145
# +++T + A G + YK A+A GRS + ++++ KL AW
# Sbjct: 337 QIRTRQMHEDAELGVAAHWKYKEGAVAAGRSSYEGRIAWLRKLIAW 382
#
#
# >PA3683
# Length = 288
#
# Score = 28.5 bits (62), Expect = 6.1
# Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
#
# Query: 69 PAIISERASVQSRQYGELLYAGDELTPELIAQKLKTLHHSDSAPFGSLLNPAYK------ 122
# P + A+ ++ GELLY DEL+P IA +++ D LLN +
# Sbjct: 108 PLWLQLSAAFTPQRLGELLYFLDELSPRRIAVEVRHPAFFDKGEDERLLNRHLRERGVER 167
#
# Query: 123 -----RAAIACGRSDD 133
# RA +C RSDD
# Sbjct: 168 ICLDSRALFSC-RSDD 182
#
#
# >HI1109
# Length = 375
#
# Score = 28.1 bits (61), Expect = 6.5
# Identities = 15/29 (51%), Positives = 19/29 (64%), Gaps = 2/29 (6%)
#
# Query: 37 IISGTAVIADTGLEWVFALPVVVIATIQL 65
# ++ G A IAD + W F LPV +IATI L
# Sbjct: 75 LLGGFAAIAD--VWWGFPLPVTIIATIAL 101
#
#
# >PAE2362
# Length = 928
#
# Score = 28.1 bits (61), Expect = 7.3
# Identities = 13/50 (26%), Positives = 25/50 (50%)
#
# Query: 71 IISERASVQSRQYGELLYAGDELTPELIAQKLKTLHHSDSAPFGSLLNPA 120
# I+ + V YG ++ + D L EL+A++++ L D+ L+ A
# Sbjct: 644 ILEKPVGVHQDPYGVIIQSSDPLPAELVAEQIRKLASMDAREIAELIKSA 693
#
#
# >TVN0985
# Length = 1015
#
# Score = 27.7 bits (60), Expect = 8.5
# Identities = 12/32 (37%), Positives = 18/32 (55%)
#
# Query: 43 VIADTGLEWVFALPVVVIATIQLVWQPAIISE 74
# V+ DT L W F +P V++ L W P+ I +
# Sbjct: 983 VLIDTFLSWPFFVPAVMLLMKHLNWWPSKIQK 1014
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.322 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,147,637
Number of Sequences: 192987
Number of extensions: 573116
Number of successful extensions: 1502
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1498
Number of HSP's gapped (non-prelim): 16
length of query: 152
length of database: 59,019,183
effective HSP length: 100
effective length of query: 52
effective length of database: 39,720,483
effective search space: 2065465116
effective search space used: 2065465116
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
S2: 60 (27.7 bits)