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UniSTS:61809 Links
STS-M86407
Homo sapiens chromosome 11, loci ACTN3 and CTSF
Macaca mulatta chromosome 14, loci LOC713811 and LOC713743
Pan troglodytes chromosome 11, loci LOC746579 and LOC466680

Found by e-PCR in sequences from Homo sapiens and Pan troglodytes.

Primer InformationHelp

Forward primer:TACTGCATCCGCCGTATGGT
Reverse primer:ACCTCAGTGGTTGGGGTCA
PCR product size:121 (bp), Homo sapiens

   Homo sapiens
Name: STS-M86407
Also known as: sts-M86407
Polymorphism info:  

Cross References Help
Gene GeneID:8722
 Symbol:CTSF
 Description:cathepsin F
 Position:11q13
Gene GeneID:89
 Symbol:ACTN3
 Description:actinin, alpha 3
 Position:11q13.1
UniGeneHs.624349 Transcribed locus, strongly similar to NP_038484.1 actinin alpha 3 [Mus musc...
 Hs.654432 Actinin, alpha 3

Mapping InformationHelp
STS-M86407 Sequence Map: Chr 11|HuRef Map Viewer
  Position: 62658474-62658594 (bp)
 
STS-M86407 Sequence Map: Chr 11|Celera Map Viewer
  Position: 63650839-63650959 (bp)
 
STS-M86407 Sequence Map: Chr 11 Map Viewer
  Position: 66087136-66087256 (bp)
 
sts-M86407 NCBI RH Map: Chr 11 Map Viewer
  Position: 578.5 (cR)
  Lod score: 2.91
 
sts-M86407 GeneMap99-GB4 Map: Chr 11 Map Viewer
  Position: 249.75 (cR3000)
  Lod score: 3.00
  Reference Interval: D11S913-D11S916

Electronic PCR results Help
RefSeq mRNA (1)
NM_001104.1 2620 .. 2740 (121 bp)  
 
mRNA (5 of 6)[Show All Hits]
M86407.1 2620 .. 2740 (121 bp)  
AK125851.1 3233 .. 3353 (121 bp)  
BC099648.1 1368 .. 1488 (121 bp)  
BC099647.3 2620 .. 2740 (121 bp)  
BC099649.3 2620 .. 2740 (121 bp)  
 
Genomic (5 of 7)[Show All Hits]
AP002748.4 136251 .. 136371 (121 bp)  
CH003458.1 64833658 .. 64833778 (121 bp)  
CH003506.1 64695893 .. 64696013 (121 bp)  
CH471076.1 11998915 .. 11999035 (121 bp)  
CM000262.1 63650839 .. 63650959 (121 bp)  
 
Working Draft phase 1 (from GenBank HTGS division) (3)
AP001100.3 81233 .. 81353 (121 bp)  
AP000481.3 60051 .. 60171 (121 bp)  
AC019220.3 171168 .. 171288 (121 bp)  
 
ESTs (5 of 14)[Show All Hits]
T29827.1 48 .. 168 (121 bp)  
F17757.1 205 .. 325 (121 bp)  
AA196000.1 166 .. 286 (121 bp)  
F21130.1 14 .. 134 (121 bp)  
AI224547.1 176 .. 296 (121 bp)  
 
Whole Genome Shotgun sequences (4)
AADD01116522.1 3554 .. 3674 (121 bp)  
AADC01099333.1 91402 .. 91522 (121 bp)  
AADB02014136.1 41456 .. 41576 (121 bp)  
ABBA01024074.1 10067 .. 10187 (121 bp)  
 

   Macaca mulatta
Name: STS-M86407
Polymorphism info:  

Cross References Help
Gene GeneID:713743
 Symbol:LOC713743
 Description:similar to Cathepsin F precursor (CATSF)
 Position: 
Gene GeneID:713811
 Symbol:LOC713811
 Description:similar to skeletal muscle specific actinin, alpha 3
 Position: 
UniGeneMmu.15808 Similar to skeletal muscle specific actinin, alpha 3

Mapping InformationHelp
STS-M86407 Sequence Map: Chr 14 Map Viewer
  Position: 7894239-7894359 (bp)

   Pan troglodytes
Name: STS-M86407
Polymorphism info:  

Cross References Help
Gene GeneID:466680
 Symbol:LOC466680
 Description:similar to alpha-actinin
 Position: 
Gene GeneID:746579
 Symbol:LOC746579
 Description:similar to cathepsin F precursor
 Position: 

Mapping InformationHelp
STS-M86407 Sequence Map: Chr 11 Map Viewer
  Position: 65029778-65029898 (bp)

Electronic PCR results Help
RefSeq mRNA (1)
XR_025196.1 2684 .. 2804 (121 bp)  
 
Genomic (1)
CM000325.1 65029778 .. 65029898 (121 bp)  
 
Whole Genome Shotgun sequences (2)
AADA01044039.1 710 .. 830 (121 bp)  
AACZ02125498.1 3642 .. 3762 (121 bp)  
 

 

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