Submitter records for this RefSNP Cluster

NCBI Assay ID	Handle|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss372701	KWOK|OVLP-000621-171168		fwd/B	C/T	gaagaatgggcagagggagaagtcgaactg	gatggaagcccaaagatatccttggccaac	06/30/00	10/10/03	79	Genomic			99 %
ss1188509	KWOK|OVLP-000804-623962		rev/T	A/G	gttggccaaggatatctttgggcttccatc	cagttcgacttctccctctgcccattcttc	09/02/00	10/10/03	86	Genomic			99 %
ss1188886	KWOK|OVLP-000804-625020		fwd/B	C/T	gaagaatgggcagagggagaagtcgaactg	gatggaagcccaaagatatccttggccaac	09/02/00	10/10/03	86	Genomic			99 %
ss1610188	KWOK|OVLP-000925-451656		rev/T	A/G	gttggccaaggatatctttgggcttccatc	cagttcgacttctccctctgcccattcttc	10/04/00	10/10/03	87	Genomic			99 %
ss1610574	KWOK|OVLP-000925-454921		fwd/B	C/T	gaagaatgggcagagggagaagtcgaactg	gatggaagcccaaagatatccttggccaac	10/04/00	10/10/03	87	Genomic			99 %
ss2617163	SC_JCM|AL355575.4_112692		fwd/B	C/T	gaagaatgggcagagggagaagtcgaactg	gatggaagcccaaagatatccttggccaac	11/03/00	10/10/03	89	Genomic			unknown
ss6663119	WI_SSAHASNP|NT_011568.10_532420		rev/T	A/G	gttggccaaggatatctttgggcttccatc	cagttcgacttctccctctgcccattcttc	02/12/03	10/10/03	111	Genomic			unknown
ss8178326	SC_SNP|NT_011568.10_532420		rev/T	A/G	gttggccaaggatatctttgggcttccatc	cagttcgacttctccctctgcccattcttc	04/16/03	10/30/04	114	Genomic			unknown
ss8488512	SC_SNP|NT_011568.12_6838248		rev/T	A/G	gttggccaaggatatctttgggcttccatc	cagttcgacttctccctctgcccattcttc	05/23/03	10/10/03	116	Genomic			unknown
ss69261419	PERLEGEN|PGP13177767		rev/T	A/G	gttggccaaggatatctttgggcttccatc	cagttcgacttctccctctgcccattcttc	01/30/07	08/14/07	127	Genomic			unknown
ss75160629	ILLUMINA|ILMN_Human_1M_rs287778		fwd/B	C/T	gaagaatgggcagagggagaagtcgaactg	gatggaagcccaaagatatccttggccaac	08/28/07	08/29/07	129	Genomic			unknown
ss76425639	AFFY|AFFY_6_1M_SNP_A-8286431		rev/T	A/G	tctttgggcttccatc	cagttcgacttctccc	08/28/07	08/30/07	129	Genomic			unknown

Fasta sequence   (Legend)

 CTAGATTCCA AAGAGTTCGA AGCACTCTGG TACTGATAAG CTTGTTATTA TTTCATAAAG
 AAGACATAAA ATACCTTGGG AATGTTACCA GTGAGTCTGT AATCTCATGT GAAAATATTT
 AGCATGAAGG GGTTGAGCAC AATGTTGAAT AGTTTATACA GTAGAATACA GGAGCAAAAA
 GTATAATATC TACTGACCCA TGTAAGTGTG CTCAAATGTT ATTAATAATG TTGAATAATG
 CCCTGAAACA CTGCTGGGTC AGAGTTtgtc acaggtgggg ttctccagga agcagatgga
 gtctaatgtg caggatgttt ttttgggagt gtccttggga tcaactccca tggaaggtgg
 gggaaaaaaa gaagaatggg cagagggaga agtcgaactg
 Y
 gatggaagcc caaagatatc cttggccaac ccatagggag ctctggagtt agcatgtctt
 ttcagcgttg tcctgagttg ggccagaatg gcctggcctt tgtCCTGGTG GGTTGGTTCA
 AGAAGAGATA TGACTTTGTG CAGCGTGGCT CTTTGTAGCC AAGACATGTT TGTAGCTCAG
 GAAATCCAGG AAGGGGACTC CCAGCAGCTG GGCCACCAAA TCCCTCCTCA AGGGGATTCT
 GGGTAGTATA TCACAGCTTG GCAACCAACT ACTCTTGAAG CCCCTGTTGA CTGTTCTTGG
 TATCAACTGA GAGCCTAGCA GTGTGACAGC CTCCTCCCCA GCTTGTTCCT TGGTTATTTC
 CTGATCTTCT ATTCATGGTA GGGAACTGAG AGGAGAGTGG

GeneView

Group Label	Contig->mRNA	Gene Model (contig mRNA transcript) Color Legend
reference	NT_079573->NM_025184 sv function
HuRef	NW_001842361->NM_025184 sv function
Celera	NW_927701->NM_025184 sv function

Integrated Maps:

NCBI Resource Links

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	C/C	C/T	T/T	HWP	C	T
ss69261419	HapMap-CEU	European	60	GF	0.267	0.200	0.033		0.489	0.178
	HapMap-HCB	Asian	46	GF	0.422	0.089			0.618	0.059
	HapMap-JPT	Asian	44	GF	0.422	0.067			0.612	0.045
	HapMap-YRI	Sub-Saharan African	60	GF	0.483	0.017			0.656	0.011
ss8178326	HapMap-CEU	European	120	IG	0.533	0.200	0.267	1.000	0.633	0.367
	HapMap-HCB	Asian	90	IG	0.867	0.089	0.044	1.000	0.911	0.089
	HapMap-JPT	Asian	88	IG	0.841	0.068	0.091	1.000	0.875	0.125
	HapMap-YRI	Sub-Saharan African	120	IG	0.983	0.017		1.000	0.992	0.008

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
DoubleHit found by:  BCM_SSAHASNP	UNKNOWN	UNKNOWN	UNKNOWN