United States National Library of Medicine National Institutes of Health

2008AB Gene Ontology Source Information

Counts
Attribute Name Description Count (MRSAT.RRF)
GO_NAMESPACE Go Namespace field data 26137
REF References or citations related to a given atom or concept. 19095
GXR GO Cross Reference to external databases (e.g. MetaCyc:TRNA-CHARGING-PWY) 14330
GO_SUBSET Go Subset field data 8996
GO_COMMENT GO Comment field data 2639
SID Secondary GO ID (e.g. GO:0020034) 1103
SYN_QUALIFIER Synonym qualifier 17
DISJOINT_FROM Disjoint from 6
Background
  • Each attribute in each source is assigned an Attribute Name (ATN) based on source documentation or NLMs understanding of the source.
  • Samples below are taken from MRSAT.RRF, although not every field is shown. Associated terms (str) from MRCONSO.RRF are also shown for clarity.
  • Sample data highlight examples of ATNs and Attribute Values (ATV) in MRSAT.RRF.
  • ATN abbreviations are contained in MRSAT, i.e., DID.
  • The corresponding ATVs, i.e., Descriptor Identifier, are listed in Appendix B.2 at http://www.nlm.nih.gov/research/umls/metab2.html#sb2_0.
  • See Section 2.7.1.3.5 in UMLS Documentation Section 2, Metathesaurusfor more information on MRSAT.RRF.
Sample Data
GO_NAMESPACE  (return to top)
cui metaui lui sui stype code atn atv str
C1817204 A14245116 L6350765 S8815337 SDUI GO:0001899 GO_NAMESPACE biological_process negative regulation of cytolysis by symbiont of host cells
C2256471 A14234928 L7602878 S8820149 SDUI GO:0003101 GO_NAMESPACE biological_process regulation of systemic arterial blood pressure by circulatory epinephrine-norepinephrine
C2256482 A14266408 L7625546 S8818149 SDUI GO:0003110 GO_NAMESPACE biological_process positive regulation of the force of heart contraction by neuronal norepinephrine
C1522760 A14246193 L7598899 S8818838 SDUI GO:0005578 GO_NAMESPACE cellular_component proteinaceous extracellular matrix
C1151515 A14246245 L3499473 S4028713 SDUI GO:0006802 GO_NAMESPACE biological_process hydroperoxidase reaction
C2265473 A14273177 L7621199 S8813426 SDUI GO:0010352 GO_NAMESPACE biological_process lithium ion export
C2265502 A14267827 L7599346 S8822618 SDUI GO:0010375 GO_NAMESPACE biological_process stomatal complex patterning
C1153605 A14273272 L7604533 S8800441 SDUI GO:0015083 GO_NAMESPACE molecular_function aluminum ion transmembrane transporter activity
C1153407 A14257546 L2431320 S2869605 SDUI GO:0015447 GO_NAMESPACE molecular_function type II protein secretor activity
REF  (return to top)
cui metaui lui sui stype code atn atv str
C1824729 A14261191 L0292546 S8808873 AUI GO:0003817 REF EC:3.4.21.46 factor D (complement)
C2257155 A14255987 L7613154 S8810491 AUI GO:0003920 REF EC:1.7.1.7 guanosine 5'-phosphate reductase activity
C2257167 A14266523 L7605595 S8810489 AUI GO:0003922 REF EC:6.3.5.2 guanosine 5'-monophosphate synthetase activity
C2257502 A14256047 L7600405 S8798264 AUI GO:0003987 REF EC:6.2.1.1 acetyl-coenzyme A synthase activity
C2257565 A14235095 L7598352 S8814045 AUI GO:0003995 REF EC:1.3.99.3 medium-chain acyl-CoA dehydrogenase activity
C2257574 A14245499 L7596763 S8799750 AUI GO:0003998 REF EC:3.6.1.7 acylphosphate phosphohydrolase activity
C2257752 A14266607 L7623014 S8794859 AUI GO:0004048 REF EC:2.4.2.18 N-(5-phospho-D-ribosyl)-anthranilate:diphosphate phospho-alpha-D-ribosyltransferase activity
C2257937 A14256119 L7600837 S8801729 AUI GO:0004079 REF EC:6.3.4.9 biotin:apomethylmalonyl-CoA:pyruvate carboxytransferase ligase (AMP-forming)
C2258181 A14266682 L7619307 S8795919 AUI GO:0004124 REF EC:2.5.1.47 OAS sulfhydrylase activity
GXR  (return to top)
cui metaui lui sui stype code atn atv str
C1155579 A11594166 L2326069 S2748985 SDUI GO:0000189 GXR Reactome:251793 nuclear translocation of MAPK
C1158549 A11606692 L2323583 S2749060 SDUI GO:0000718 GXR Reactome:262280 nucleotide-excision repair, DNA damage removal
C1816375 A11581709 L6352495 S7278809 SDUI GO:0000722 GXR Reactome:259072 telomere maintenance via recombination
C1816375 A11581709 L6352495 S7278809 SDUI GO:0000722 GXR Reactome:264790 telomere maintenance via recombination
C1152411 A11619328 L2430497 S2865119 SDUI GO:0003964 GXR Reactome:10568 RNA-directed DNA polymerase activity
C1158282 A11582612 L6347894 S7271443 SDUI GO:0006112 GXR Reactome:289856 energy reserve metabolic process
C1158258 A11601390 L3499108 S4022070 SDUI GO:0006121 GXR Reactome:258765 mitochondrial electron transport, succinate to ubiquinone
C0012899 A11601450 L0012899 S0366112 SDUI GO:0006281 GXR Reactome:286582 DNA repair
C1158530 A11607629 L2320141 S2744003 SDUI GO:0006284 GXR Reactome:280706 base-excision repair
GO_SUBSET  (return to top)
cui metaui lui sui stype code atn atv str
C0035150 A11618816 L0035150 S0425080 SDUI GO:0000003 GO_SUBSET goslim_pir reproduction
C0683142 A11619850 L6348353 S7275405 SDUI GO:0006259 GO_SUBSET goslim_pir DNA metabolic process
C1157227 A14235878 L2318763 S2744316 SDUI GO:0006755 GO_SUBSET gosubset_prok carbamoyl phosphate-ADP transphosphorylation
C0005775 A14241116 L0005775 S0415775 SDUI GO:0008015 GO_SUBSET goslim_pir blood circulation
C1153563 A14273275 L7618494 S8823062 SDUI GO:0015118 GO_SUBSET gosubset_prok tellurite transmembrane transporter activity
C1325473 A14273280 L7599173 S8821073 SDUI GO:0015148 GO_SUBSET gosubset_prok D-xylose transmembrane transporter activity
C2266048 A14246848 L7610490 S8820568 SDUI GO:0015153 GO_SUBSET gosubset_prok rhamnose transmembrane transporter activity
C1153666 A14246851 L7614008 S8817589 SDUI GO:0015166 GO_SUBSET gosubset_prok polyol transmembrane transporter activity
C2266053 A14246854 L7596595 S8798378 SDUI GO:0015172 GO_SUBSET gosubset_prok acidic amino acid transmembrane transporter activity
GO_COMMENT  (return to top)
cui metaui lui sui stype code atn atv str
C1325832 A11606634 L0517156 S0753605 SDUI GO:0000219 GO_COMMENT This term was made obsolete because more specific terms were created. V-ATPase
C0600436 A14245057 L1166133 S1211205 SDUI GO:0000496 GO_COMMENT Note that with respect to annotation, "base pairing" and its child terms are intended to be used to annotate the activity of gene products composed of nucleic acid, presumably RNA, to interact with other nucleic acid molecules via base pairing. Internal base pairing with itself is considered part of the secondary structure of the molecule and is not within the scope of GO function. base pairing
C2265276 A14266176 L7604617 S8801188 SDUI GO:0000945 GO_COMMENT Note that with respect to annotation, "base pairing with RNA" and its child terms are intended to be used to annotate the activity of gene products composed of nucleic acid, presumably RNA, to interact with other RNA molecules via base pairing. Internal base pairing with itself is considered part of the secondary structure of the molecule and is not within the scope of GO function. base pairing with snRNA
C1325830 A11600570 L2319751 S2753081 SDUI GO:0001724 GO_COMMENT This term was made obsolete because it represents a single gene product and not a complex. type III intermediate filament associated protein
C0282557 A11606924 L0397857 S7274066 SDUI GO:0002385 GO_COMMENT This term was added by GO_REF:0000022. mucosal immune response
C1326435 A11607053 L3497468 S4025599 SDUI GO:0003719 GO_COMMENT This term was made obsolete because sequestering is a process rather than a function. transcription factor binding, cytoplasmic sequestering
C1325399 A11594617 L2320301 S2752137 SDUI GO:0003732 GO_COMMENT This term was made obsolete because the functional distinction for cap binding is the structure of the cap, not the type of RNA it is attached to. snRNA cap binding
C1149553 A11594620 L0115533 S1345011 SDUI GO:0003763 GO_COMMENT This term was made obsolete because it represents a class of gene products, and its definition incorporates process information. chaperonin
C1149584 A11594628 L2429399 S2865828 SDUI GO:0003801 GO_COMMENT This term was made obsolete because it refers to involvement in a biological process. blood coagulation factor activity
SID  (return to top)
cui metaui lui sui stype code atn atv str
C1325610 A11612877 L3498250 S4028104 SDUI GO:0000924 SID GO:0000925 gamma-tubulin ring complex, centrosomal
C2266771 A14245848 L7612989 S8809105 SDUI GO:0004499 SID GO:0047076 flavin-containing monooxygenase activity
C1149929 A11607216 L2432039 S2868730 SDUI GO:0004722 SID GO:0030360 protein serine/threonine phosphatase activity
C1151619 A11594798 L2430504 S2869297 SDUI GO:0004784 SID GO:0016954 superoxide dismutase activity
C1153256 A14246178 L7616376 S8803302 SDUI GO:0005375 SID GO:0005379 copper ion transmembrane transporter activity
C1325639 A11613663 L3498429 S4028312 SDUI GO:0005960 SID GO:0005961 glycine cleavage complex
C1158758 A11595200 L2326530 S2752603 SDUI GO:0006400 SID GO:0016549 tRNA modification
C0025558 A11601759 L0215548 S0289447 SDUI GO:0007552 SID GO:0046698 metamorphosis
C1157923 A11601854 L6346832 S7273060 SDUI GO:0008300 SID GO:0016097 isoprenoid catabolic process
SYN_QUALIFIER  (return to top)
cui metaui lui sui stype code atn atv str
C2266398 A14250355 L7619975 S8801785 AUI GO:0001525 SYN_QUALIFIER systematic synonym blood vessel formation from pre-existing blood vessels
C2244203 A14271499 L7620727 S8809234 AUI GO:0001756 SYN_QUALIFIER systematic synonym formation of mesodermal clusters
C2246013 A14245128 L7617436 S8813540 AUI GO:0001946 SYN_QUALIFIER systematic synonym lymph vessel formation
C2263200 A14272722 L7609266 S8809644 AUI GO:0007283 SYN_QUALIFIER systematic synonym generation of spermatozoa
C2263202 A14267391 L7607475 S8827849 AUI GO:0007296 SYN_QUALIFIER systematic synonym yolk production
C2263225 A14272734 L7598540 S8815696 AUI GO:0007409 SYN_QUALIFIER systematic synonym neuron long process generation
C0597545 A11601737 L3497655 S4025326 AUI GO:0007416 SYN_QUALIFIER systematic synonym synapse biogenesis
C2265241 A14267750 L5827202 S6663531 AUI GO:0009556 SYN_QUALIFIER systematic synonym microspore development
C1160491 A14257340 L7605345 S8808213 AUI GO:0009561 SYN_QUALIFIER systematic synonym embryo sac development from the megaspore
DISJOINT_FROM  (return to top)
cui metaui lui sui stype code atn atv str
C1325880 A11627008 L3498239 S4026547 SDUI GO:0009987 DISJOINT_FROM GO:0032501 ! multicellular organismal process cellular process
C1325880 A11627008 L3498239 S4026547 SDUI GO:0009987 DISJOINT_FROM GO:0051704 ! multi-organism process cellular process
C1327400 A11591625 L6351947 S7274082 SDUI GO:0032501 DISJOINT_FROM GO:0009987 ! cellular process multicellular organismal process
C1327400 A11591625 L6351947 S7274082 SDUI GO:0032501 DISJOINT_FROM GO:0051704 ! multi-organism process multicellular organismal process
C1660836 A11600068 L6344536 S7274073 SDUI GO:0051704 DISJOINT_FROM GO:0009987 ! cellular process multi-organism process
C1660836 A11600068 L6344536 S7274073 SDUI GO:0051704 DISJOINT_FROM GO:0032501 ! multicellular organismal process multi-organism process

Last reviewed: 02 February 2009
Last updated: 02 February 2009
First published: 02 February 2009
Metadata| Permanence level: Permanence Not Guaranteed