The following is a list of papers that cite:

Gotea, V., V. Veeramachaneni, and W. Makałowski (2003) Mastering seeds for genomic size nucleotide BLAST searches. Nucleic Acids Research 31(23): 6935-6941


See a partial list in ISI Web of Science®


8. Anez, M., C. Putonti, G. E. Fox, Y. Fofanov, and R. C. Willson (2008) Exhaustive computational identification of pathogen sequences far-distant from background genomes: Identification and experimental verification of human-blind dengue PCR primers. Journal of Biotechnology 133: 267-276

7. Ma, B., and M. Li (2007) On the complexity of the spaced seeds. Journal of Computer and System Sciences 73: 1024-1034

6. Zhang, L. X. (2007) Superiority of spaced seeds for homology search. IEEE-ACM Transactions on Computational Biology and Bioinformatics 4: 496-505

5. Altun, G., W. Zhong, Y. Pan, P. C. Tai, and R. W. Harrison (2006) A new seed selection algorithm that maximizes local structural similarity in proteins. Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology: 5822-5825

4. Cameron, M., H. E. Williams, and A. Cannane (2006) A deterministic finite automaton for faster protein hit detection in BLAST. Journal of Computational Biology 13: 965-978

3. del Val, C., V. Y. Kuryshev, K. H. Glatting, P. Ernst, A. Hotz-Wagenblatt, A. Poustka, S. Suhai, and S. Wiemann (2006) CAFTAN: a tool for fast mapping, and quality assessment of cDNAs. BMC Bioinformatics 7: 15

2. Li, M., B. Ma, and L. Zhang (2006) Superiority and complexity of the spaced seeds. Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms: 444-453

1. Preparata, F. P., L. X. Zhang, and K. P. Choi (2005) Quick, practical selection of effective seeds for homology search. Journal of Computational Biology 12: 1137-1152

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