--$Revision: 6.2 $ --**************************************************************** -- -- NCBI Bibliographic data elements -- by James Ostell, 1990 -- -- Taken from the American National Standard for -- Bibliographic References -- ANSI Z39.29-1977 -- Version 3.0 - June 1994 -- PubMedId added in 1996 -- ArticleIds and eprint elements added in 1999 -- --**************************************************************** NCBI-Biblio DEFINITIONS ::= BEGIN EXPORTS Cit-art, Cit-jour, Cit-book, Cit-pat, Cit-let, Id-pat, Cit-gen, Cit-proc, Cit-sub, Title, Author, PubMedId; IMPORTS Person-id, Date, Dbtag FROM NCBI-General; -- Article Ids ArticleId ::= CHOICE { -- can be many ids for an article pubmed PubMedId , -- see types below medline MedlineUID , doi DOI , pii PII , pmcid PmcID , pmcpid PmcPid , pmpid PmPid , other Dbtag } -- generic catch all PubMedId ::= INTEGER -- Id from the PubMed database at NCBI MedlineUID ::= INTEGER -- Id from MEDLINE DOI ::= VisibleString -- Document Object Identifier PII ::= VisibleString -- Controlled Publisher Identifier PmcID ::= INTEGER -- PubMed Central Id PmcPid ::= VisibleString -- Publisher Id supplied to PubMed Central PmPid ::= VisibleString -- Publisher Id supplied to PubMed ArticleIdSet ::= SET OF ArticleId -- Status Dates PubStatus ::= INTEGER { -- points of publication received (1) , -- date manuscript received for review accepted (2) , -- accepted for publication epublish (3) , -- published electronically by publisher ppublish (4) , -- published in print by publisher revised (5) , -- article revised by publisher/author pmc (6) , -- article first appeared in PubMed Central pmcr (7) , -- article revision in PubMed Central pubmed (8) , -- article citation first appeared in PubMed pubmedr (9) , -- article citation revision in PubMed aheadofprint (10), -- epublish, but will be followed by print premedline (11), -- date into PreMedline status medline (12), -- date made a MEDLINE record other (255) } PubStatusDate ::= SEQUENCE { -- done as a structure so fields can be added pubstatus PubStatus , date Date } -- time may be added later PubStatusDateSet ::= SET OF PubStatusDate -- Citation Types Cit-art ::= SEQUENCE { -- article in journal or book title Title OPTIONAL , -- title of paper (ANSI requires) authors Auth-list OPTIONAL , -- authors (ANSI requires) from CHOICE { -- journal or book journal Cit-jour , book Cit-book , proc Cit-proc } , ids ArticleIdSet OPTIONAL } -- lots of ids Cit-jour ::= SEQUENCE { -- Journal citation title Title , -- title of journal imp Imprint } Cit-book ::= SEQUENCE { -- Book citation title Title , -- Title of book coll Title OPTIONAL , -- part of a collection authors Auth-list, -- authors imp Imprint } Cit-proc ::= SEQUENCE { -- Meeting proceedings book Cit-book , -- citation to meeting meet Meeting } -- time and location of meeting -- Patent number and date-issue were made optional in 1997 to -- support patent applications being issued from the USPTO -- Semantically a Cit-pat must have either a patent number or -- an application number (or both) to be valid Cit-pat ::= SEQUENCE { -- patent citation title VisibleString , authors Auth-list, -- author/inventor country VisibleString , -- Patent Document Country doc-type VisibleString , -- Patent Document Type number VisibleString OPTIONAL, -- Patent Document Number date-issue Date OPTIONAL, -- Patent Issue/Pub Date class SEQUENCE OF VisibleString OPTIONAL , -- Patent Doc Class Code app-number VisibleString OPTIONAL , -- Patent Doc Appl Number app-date Date OPTIONAL , -- Patent Appl File Date applicants Auth-list OPTIONAL , -- Applicants assignees Auth-list OPTIONAL , -- Assignees priority SEQUENCE OF Patent-priority OPTIONAL , -- Priorities abstract VisibleString OPTIONAL } -- abstract of patent Patent-priority ::= SEQUENCE { country VisibleString , -- Patent country code number VisibleString , -- number assigned in that country date Date } -- date of application Id-pat ::= SEQUENCE { -- just to identify a patent country VisibleString , -- Patent Document Country id CHOICE { number VisibleString , -- Patent Document Number app-number VisibleString } , -- Patent Doc Appl Number doc-type VisibleString OPTIONAL } -- Patent Doc Type Cit-let ::= SEQUENCE { -- letter, thesis, or manuscript cit Cit-book , -- same fields as a book man-id VisibleString OPTIONAL , -- Manuscript identifier type ENUMERATED { manuscript (1) , letter (2) , thesis (3) } OPTIONAL } -- NOTE: this is just to cite a -- direct data submission, see NCBI-Submit -- for the form of a sequence submission Cit-sub ::= SEQUENCE { -- citation for a direct submission authors Auth-list , -- not necessarily authors of the paper imp Imprint OPTIONAL , -- this only used to get date.. will go medium ENUMERATED { -- medium of submission paper (1) , tape (2) , floppy (3) , email (4) , other (255) } OPTIONAL , date Date OPTIONAL , -- replaces imp, will become required descr VisibleString OPTIONAL } -- description of changes for public view Cit-gen ::= SEQUENCE { -- NOT from ANSI, this is a catchall cit VisibleString OPTIONAL , -- anything, not parsable authors Auth-list OPTIONAL , muid INTEGER OPTIONAL , -- medline uid journal Title OPTIONAL , volume VisibleString OPTIONAL , issue VisibleString OPTIONAL , pages VisibleString OPTIONAL , date Date OPTIONAL , serial-number INTEGER OPTIONAL , -- for GenBank style references title VisibleString OPTIONAL , -- eg. cit="unpublished",title="title" pmid PubMedId OPTIONAL } -- PubMed Id -- Authorship Group Auth-list ::= SEQUENCE { names CHOICE { std SEQUENCE OF Author , -- full citations ml SEQUENCE OF VisibleString , -- MEDLINE, semi-structured str SEQUENCE OF VisibleString } , -- free for all affil Affil OPTIONAL } -- author affiliation Author ::= SEQUENCE { name Person-id , -- Author, Primary or Secondary level ENUMERATED { primary (1), secondary (2) } OPTIONAL , role ENUMERATED { -- Author Role Indicator compiler (1), editor (2), patent-assignee (3), translator (4) } OPTIONAL , affil Affil OPTIONAL , is-corr BOOLEAN OPTIONAL } -- TRUE if corresponding author Affil ::= CHOICE { str VisibleString , -- unparsed string std SEQUENCE { -- std representation affil VisibleString OPTIONAL , -- Author Affiliation, Name div VisibleString OPTIONAL , -- Author Affiliation, Division city VisibleString OPTIONAL , -- Author Affiliation, City sub VisibleString OPTIONAL , -- Author Affiliation, County Sub country VisibleString OPTIONAL , -- Author Affiliation, Country street VisibleString OPTIONAL , -- street address, not ANSI email VisibleString OPTIONAL , fax VisibleString OPTIONAL , phone VisibleString OPTIONAL , postal-code VisibleString OPTIONAL }} -- Title Group -- Valid for = A = Analytic (Cit-art) -- J = Journals (Cit-jour) -- B = Book (Cit-book) -- Valid for: Title ::= SET OF CHOICE { name VisibleString , -- Title, Anal,Coll,Mono AJB tsub VisibleString , -- Title, Subordinate A B trans VisibleString , -- Title, Translated AJB jta VisibleString , -- Title, Abbreviated J iso-jta VisibleString , -- specifically ISO jta J ml-jta VisibleString , -- specifically MEDLINE jta J coden VisibleString , -- a coden J issn VisibleString , -- ISSN J abr VisibleString , -- Title, Abbreviated B isbn VisibleString } -- ISBN B Imprint ::= SEQUENCE { -- Imprint group date Date , -- date of publication volume VisibleString OPTIONAL , issue VisibleString OPTIONAL , pages VisibleString OPTIONAL , section VisibleString OPTIONAL , pub Affil OPTIONAL, -- publisher, required for book cprt Date OPTIONAL, -- copyright date, " " " part-sup VisibleString OPTIONAL , -- part/sup of volume language VisibleString DEFAULT "ENG" , -- put here for simplicity prepub ENUMERATED { -- for prepublication citations submitted (1) , -- submitted, not accepted in-press (2) , -- accepted, not published other (255) } OPTIONAL , part-supi VisibleString OPTIONAL , -- part/sup on issue retract CitRetract OPTIONAL , -- retraction info pubstatus PubStatus OPTIONAL , -- current status of this publication history PubStatusDateSet OPTIONAL } -- dates for this record CitRetract ::= SEQUENCE { type ENUMERATED { -- retraction of an entry retracted (1) , -- this citation retracted notice (2) , -- this citation is a retraction notice in-error (3) , -- an erratum was published about this erratum (4) } , -- this is a published erratum exp VisibleString OPTIONAL } -- citation and/or explanation Meeting ::= SEQUENCE { number VisibleString , date Date , place Affil OPTIONAL } END