R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 259 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|11762156|gb|AAG40356.1|AF325004_1 (AF325004) F5A8.1 [Arabidopsis thaliana]
Length = 180
Frame 3 hits (HSPs): ____________________
Frame 2 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | | 180
0 50 100 150
Plus Strand HSPs:
Score = 170 (59.8 bits), Expect = 9.5e-26, Sum P(2) = 9.5e-26
Identities = 29/70 (41%), Positives = 44/70 (62%), Frame = +3
Query: 327 LQRKIDYMLKKGMDPLP*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSDSSQVLK 506
L +++DY+++ P + G + YYDGR WT+WKLP+F C+DS+QVLK
Sbjct: 81 LAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPRYYDGRYWTMWKLPLFGCTDSAQVLK 140
Query: 507 EIHECRRVYP 536
E+ EC++ YP
Sbjct: 141 EVEECKKEYP 150
Score = 146 (51.4 bits), Expect = 9.5e-26, Sum P(2) = 9.5e-26
Identities = 37/79 (46%), Positives = 47/79 (59%), Frame = +2
Query: 110 MSAATFAAHIAGAGFV----GLKSNSSNLCPSTGSIGWK-RKIVSNGSKTYCMKTWNPIN 274
+S+AT A A A V GLKS+++ P+T I SNG + CM+ W PI
Sbjct: 6 LSSATMVASPAQATMVAPFNGLKSSAA--FPATRKANNDITSITSNGGRVNCMQVWPPIG 63
Query: 275 NKKFETLSYLPPLSDESIAKE 337
KKFETLSYLP L+D +AKE
Sbjct: 64 KKKFETLSYLPDLTDSELAKE 84
>gi|4689388|gb|AAD27881.1|AF139469_1 (AF139469) ribulose-1,5-bisphosphate
carboxylase small subunit [Vigna radiata]
Length = 181
Frame 3 hits (HSPs): ____________________
Frame 2 hits (HSPs): __________________
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | 181
0 50 100 150
Plus Strand HSPs:
Score = 177 (62.3 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
Identities = 35/72 (48%), Positives = 46/72 (63%), Frame = +3
Query: 327 LQRKIDYMLKKGMDP-LP*NLMSWGVFVXK-TAICQGYYDGRXWTLWKLPMFACSDSSQV 500
L +++DY+L+ G P L L F + GYYDGR WT+WKLPM+ C+DSSQV
Sbjct: 82 LGKEVDYLLRSGWIPCLEFELSHKDAFPHRENNRSPGYYDGRYWTMWKLPMYGCTDSSQV 141
Query: 501 LKEIHECRRVYP 536
LKE+ E R +YP
Sbjct: 142 LKELREARTLYP 153
Score = 125 (44.0 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
Identities = 27/64 (42%), Positives = 36/64 (56%), Frame = +2
Query: 146 AGFVGLKSNSSNLCPSTGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDES 325
A F GLKS P+ + + +NG + CM+ W I KKFETLSYLP L++E
Sbjct: 24 APFTGLKSLGG--FPTRKTNNDITSVANNGGRVQCMQVWPTIGKKKFETLSYLPDLTEEQ 81
Query: 326 IAKE 337
+ KE
Sbjct: 82 LGKE 85
Score = 51 (18.0 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +1
Query: 355 RKGWIPCLE 381
R GWIPCLE
Sbjct: 91 RSGWIPCLE 99
>gi|132143|sp|P16881|RBS_EUGGR RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAINS
PRECURSOR (RUBISCO SMALL SUBUNITS) >gi|99355|pir||S08382
ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
precursor - Euglena gracilis >gi|18428|emb|CAA35584.1| (X17546)
precursor polypeptide (AA -134 to 1139) [Euglena gracilis]
Length = 1273
Frame 3 hits (HSPs): ____ ____ ____ _____ ____ ____ _____ ____
Frame 2 hits (HSPs): __ ___ ___ ___ __ ___ ___ __
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 1273
0 500 1000
__________________
Annotated Domains:
DOMO DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 135..268
DOMO DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 270..412
DOMO DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 414..546
DOMO DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 565..699
DOMO DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 701..834
DOMO DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 853..986
DOMO DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 988..1130
DOMO DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 1132..1266
PFAM RuBisCO_small: Ribulose bisphosphate car 135..260
PFAM RuBisCO_small: Ribulose bisphosphate car 279..404
PFAM RuBisCO_small: Ribulose bisphosphate car 422..547
PFAM RuBisCO_small: Ribulose bisphosphate car 566..691
PFAM RuBisCO_small: Ribulose bisphosphate car 709..834
PFAM RuBisCO_small: Ribulose bisphosphate car 854..978
PFAM RuBisCO_small: Ribulose bisphosphate car 997..1122
PFAM RuBisCO_small: Ribulose bisphosphate car 1141..1266
PRODOM PD088996: RBS_EUGGR 1..133
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 135..259
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 279..403
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 422..546
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 566..690
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 709..833
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 854..977
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 997..1121
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 1141..1265
__________________
Plus Strand HSPs:
Score = 186 (65.5 bits), Expect = 5.7e-24, Sum P(2) = 5.7e-24
Identities = 36/84 (42%), Positives = 51/84 (60%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPL-----P*N-LMSWGVFVXKTAICQGYYDGRXWTLWKLP 470
P + +++D ++ KG+ P P N ++ V + GYYD R WT+WKLP
Sbjct: 585 PLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLP 644
Query: 471 MFACSDSSQVLKEIHECRRVYPKC 542
MF C+D+SQVL+EI ECRR YP+C
Sbjct: 645 MFGCTDASQVLREISECRRAYPQC 668
Score = 186 (65.5 bits), Expect = 5.7e-24, Sum P(2) = 5.7e-24
Identities = 36/84 (42%), Positives = 51/84 (60%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPL-----P*N-LMSWGVFVXKTAICQGYYDGRXWTLWKLP 470
P + +++D ++ KG+ P P N ++ V + GYYD R WT+WKLP
Sbjct: 728 PLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLP 787
Query: 471 MFACSDSSQVLKEIHECRRVYPKC 542
MF C+D+SQVL+EI ECRR YP+C
Sbjct: 788 MFGCTDASQVLREISECRRAYPQC 811
Score = 186 (65.5 bits), Expect = 5.7e-24, Sum P(2) = 5.7e-24
Identities = 36/84 (42%), Positives = 51/84 (60%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPL-----P*N-LMSWGVFVXKTAICQGYYDGRXWTLWKLP 470
P + +++D ++ KG+ P P N ++ V + GYYD R WT+WKLP
Sbjct: 873 PLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLP 932
Query: 471 MFACSDSSQVLKEIHECRRVYPKC 542
MF C+D+SQVL+EI ECRR YP+C
Sbjct: 933 MFGCTDASQVLREISECRRAYPQC 956
Score = 186 (65.5 bits), Expect = 5.7e-24, Sum P(2) = 5.7e-24
Identities = 36/84 (42%), Positives = 51/84 (60%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPL-----P*N-LMSWGVFVXKTAICQGYYDGRXWTLWKLP 470
P + +++D ++ KG+ P P N ++ V + GYYD R WT+WKLP
Sbjct: 1016 PLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLP 1075
Query: 471 MFACSDSSQVLKEIHECRRVYPKC 542
MF C+D+SQVL+EI ECRR YP+C
Sbjct: 1076 MFGCTDASQVLREISECRRAYPQC 1099
Score = 186 (65.5 bits), Expect = 5.7e-24, Sum P(2) = 5.7e-24
Identities = 36/84 (42%), Positives = 51/84 (60%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPL-----P*N-LMSWGVFVXKTAICQGYYDGRXWTLWKLP 470
P + +++D ++ KG+ P P N ++ V + GYYD R WT+WKLP
Sbjct: 1160 PLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLP 1219
Query: 471 MFACSDSSQVLKEIHECRRVYPKC 542
MF C+D+SQVL+EI ECRR YP+C
Sbjct: 1220 MFGCTDASQVLREISECRRAYPQC 1243
Score = 186 (65.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 36/84 (42%), Positives = 51/84 (60%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPL-----P*N-LMSWGVFVXKTAICQGYYDGRXWTLWKLP 470
P + +++D ++ KG+ P P N ++ V + GYYD R WT+WKLP
Sbjct: 298 PLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLP 357
Query: 471 MFACSDSSQVLKEIHECRRVYPKC 542
MF C+D+SQVL+EI ECRR YP+C
Sbjct: 358 MFGCTDASQVLREISECRRAYPQC 381
Score = 186 (65.5 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 36/84 (42%), Positives = 51/84 (60%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPL-----P*N-LMSWGVFVXKTAICQGYYDGRXWTLWKLP 470
P + +++D ++ KG+ P P N ++ V + GYYD R WT+WKLP
Sbjct: 154 PLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLP 213
Query: 471 MFACSDSSQVLKEIHECRRVYPKC 542
MF C+D+SQVL+EI ECRR YP+C
Sbjct: 214 MFGCTDASQVLREISECRRAYPQC 237
Score = 181 (63.7 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 35/84 (41%), Positives = 50/84 (59%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPL-----P*N-LMSWGVFVXKTAICQGYYDGRXWTLWKLP 470
P + +++D ++ KG+ P P N ++ V + GYYD WT+WKLP
Sbjct: 441 PLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNHYWTMWKLP 500
Query: 471 MFACSDSSQVLKEIHECRRVYPKC 542
MF C+D+SQVL+EI ECRR YP+C
Sbjct: 501 MFGCTDASQVLREISECRRAYPQC 524
Score = 141 (49.6 bits), Expect = 5.7e-24, Sum P(2) = 5.7e-24
Identities = 29/50 (58%), Positives = 33/50 (66%), Frame = +2
Query: 188 PSTGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKE 337
PS S W ++ G K MK WNP+NNKKFET SYLPPLSD IAK+
Sbjct: 404 PSGSSSSWGMAAMT-GEKD--MKVWNPVNNKKFETFSYLPPLSDAQIAKQ 450
Score = 141 (49.6 bits), Expect = 5.7e-24, Sum P(2) = 5.7e-24
Identities = 29/50 (58%), Positives = 33/50 (66%), Frame = +2
Query: 188 PSTGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKE 337
PS S W ++ G K MK WNP+NNKKFET SYLPPLSD IAK+
Sbjct: 691 PSGSSSSWGMAAMT-GEKD--MKVWNPVNNKKFETFSYLPPLSDAQIAKQ 737
Score = 137 (48.2 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 28/49 (57%), Positives = 33/49 (67%), Frame = +2
Query: 191 STGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKE 337
S+ S W ++ G K MK WNP+NNKKFET SYLPPLSD IAK+
Sbjct: 837 SSSSSSWGMAAMT-GEKE--MKVWNPVNNKKFETFSYLPPLSDAQIAKQ 882
Score = 135 (47.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 29/50 (58%), Positives = 34/50 (68%), Frame = +2
Query: 188 PS-TGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKE 337
PS + S W ++ G K MK WNP+NNKKFET SYLPPLSD IAK+
Sbjct: 260 PSGSSSSSWGMAAMT-GEKD--MKVWNPVNNKKFETFSYLPPLSDAQIAKQ 307
Score = 135 (47.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 29/50 (58%), Positives = 34/50 (68%), Frame = +2
Query: 188 PS-TGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKE 337
PS + S W ++ G K MK WNP+NNKKFET SYLPPLSD IAK+
Sbjct: 547 PSGSSSSSWGMAAMT-GEKD--MKVWNPVNNKKFETFSYLPPLSDAQIAKQ 594
Score = 135 (47.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 29/50 (58%), Positives = 34/50 (68%), Frame = +2
Query: 188 PS-TGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKE 337
PS + S W ++ G K MK WNP+NNKKFET SYLPPLSD IAK+
Sbjct: 978 PSGSSSSSWGMAAMT-GEKD--MKVWNPVNNKKFETFSYLPPLSDAQIAKQ 1025
Score = 135 (47.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 29/50 (58%), Positives = 34/50 (68%), Frame = +2
Query: 188 PS-TGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKE 337
PS + S W ++ G K MK WNP+NNKKFET SYLPPLSD IAK+
Sbjct: 1122 PSGSSSSSWGMAAMT-GEKE--MKVWNPVNNKKFETFSYLPPLSDAQIAKQ 1169
Score = 132 (46.5 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 23/29 (79%), Positives = 25/29 (86%), Frame = +2
Query: 251 MKTWNPINNKKFETLSYLPPLSDESIAKE 337
MK WNP+NNKKFET SYLPPLSD IAK+
Sbjct: 135 MKVWNPVNNKKFETFSYLPPLSDAQIAKQ 163
>gi|99356|pir||A30834 ribulose-bisphosphate carboxylase (EC 4.1.1.39) small
chain - Euglena gracilis
Length = 138
Frame 3 hits (HSPs): __________
Frame 2 hits (HSPs): ___________
Frame 1 hits (HSPs): ____
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 138
0 50 100
__________________
Annotated Domains:
DOMO DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 1..133
__________________
Plus Strand HSPs:
Score = 132 (46.5 bits), Expect = 1.9e-23, Sum P(3) = 1.9e-23
Identities = 21/28 (75%), Positives = 25/28 (89%), Frame = +3
Query: 429 GYYDGRXWTLWKLPMFACSDSSQVLKEI 512
GYYD R WT+WKLPMF C+D+SQVLKE+
Sbjct: 73 GYYDNRYWTMWKLPMFGCTDASQVLKEL 100
Score = 120 (42.2 bits), Expect = 1.9e-23, Sum P(3) = 1.9e-23
Identities = 21/29 (72%), Positives = 24/29 (82%), Frame = +2
Query: 251 MKTWNPINNKKFETLSYLPPLSDESIAKE 337
MK WNP+NNK +ET SYLPPLSD IAK+
Sbjct: 1 MKVWNPVNNKFWETFSYLPPLSDREIAKQ 29
Score = 51 (18.0 bits), Expect = 1.9e-23, Sum P(3) = 1.9e-23
Identities = 8/8 (100%), Positives = 8/8 (100%), Frame = +1
Query: 358 KGWIPCLE 381
KGWIPCLE
Sbjct: 36 KGWIPCLE 43
>gi|132098|sp|P04715|RBS2_PETSP RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
SSU11A PRECURSOR (RUBISCO SMALL SUBUNIT SSU11A)
>gi|68085|pir||RKPJS1 ribulose-bisphosphate carboxylase (EC
4.1.1.39) small chain (ssu11A) precursor - garden petunia
>gi|20493|emb|CAA27445.1| (X03821) ribulose 1,5-bisphosphate
carboxylase [Petunia x hybrida]
Length = 180
Frame 3 hits (HSPs): ____________________
Frame 2 hits (HSPs): ______________________
Frame 1 hits (HSPs): ___
Annotated Domains: ____________________________________________
__________________________________________________
Database sequence: | | | | | 180
0 50 100 150
__________________
Annotated Domains:
PFAM RuBisCO_small: Ribulose bisphosphate car 58..177
PRINTS RUBISCOSMALL1: RUBISCO small subunit mot 19..36
PRINTS RUBISCOSMALL2: RUBISCO small subunit mot 46..64
PRINTS RUBISCOSMALL3: RUBISCO small subunit mot 67..93
PRINTS RUBISCOSMALL4: RUBISCO small subunit mot 95..110
PRINTS RUBISCOSMALL5: RUBISCO small subunit mot 117..146
PRINTS RUBISCOSMALL6: RUBISCO small subunit mot 151..177
PRODOM PD000564: RBS(27) RBS2(12) RBS1(12) 21..56
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 58..176
PROSITE SOYBEAN_KUNITZ: Soybean trypsin inhibito 75..91
__________________
Plus Strand HSPs:
Score = 160 (56.3 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 30/70 (42%), Positives = 42/70 (60%), Frame = +3
Query: 327 LQRKIDYMLKKGMDPLP*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSDSSQVLK 506
L ++I+Y+L KG P G + YYDGR WT+WKLPMF C+D++QVL
Sbjct: 83 LLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLG 142
Query: 507 EIHECRRVYP 536
E+ E ++ YP
Sbjct: 143 ELQEAKKAYP 152
Score = 134 (47.2 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 32/76 (42%), Positives = 44/76 (57%), Frame = +2
Query: 110 MSAATFAAHIAG-AGFVGLKSNSSNLCPSTGSIGWKRKIVSNGSKTYCMKTWNPINNKKF 286
++ +T AA + A F GLKS +S ++ I SNG + CM+ W P KK+
Sbjct: 11 VATSTNAAQASMVAPFTGLKSAASFPVSRKQNLDIT-SIASNGGRVQCMQVWPPYGKKKY 69
Query: 287 ETLSYLPPLSDESIAKE 337
ETLSYLP L+DE + KE
Sbjct: 70 ETLSYLPDLTDEQLLKE 86
Score = 50 (17.6 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 7/8 (87%), Positives = 8/8 (100%), Frame = +1
Query: 358 KGWIPCLE 381
KGW+PCLE
Sbjct: 93 KGWVPCLE 100
>gi|225465|prf||1303356A RuBisCO small subunit [Euglena gracilis]
Length = 138
Frame 3 hits (HSPs): __________
Frame 2 hits (HSPs): ___________
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | 138
0 50 100
Plus Strand HSPs:
Score = 132 (46.5 bits), Expect = 2.3e-23, Sum P(3) = 2.3e-23
Identities = 21/28 (75%), Positives = 25/28 (89%), Frame = +3
Query: 429 GYYDGRXWTLWKLPMFACSDSSQVLKEI 512
GYYD R WT+WKLPMF C+D+SQVLKE+
Sbjct: 73 GYYDNRYWTMWKLPMFGCTDASQVLKEL 100
Score = 119 (41.9 bits), Expect = 2.3e-23, Sum P(3) = 2.3e-23
Identities = 21/29 (72%), Positives = 24/29 (82%), Frame = +2
Query: 251 MKTWNPINNKKFETLSYLPPLSDESIAKE 337
MK WNP+NNK +ET SYLPPLSD IAK+
Sbjct: 1 MKVWNPVNNKFWETFSYLPPLSDAEIAKQ 29
Score = 51 (18.0 bits), Expect = 2.3e-23, Sum P(3) = 2.3e-23
Identities = 8/8 (100%), Positives = 8/8 (100%), Frame = +1
Query: 358 KGWIPCLE 381
KGWIPCLE
Sbjct: 36 KGWIPCLE 43
>gi|6272547|gb|AAF06097.1| (AF101228) ribulose 1,5-bisphosphate carboxylase
small chain precursor [Manihot esculenta]
Length = 176
Frame 3 hits (HSPs): ______________
Frame 2 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | 176
0 50 100 150
Plus Strand HSPs:
Score = 148 (52.1 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 45/110 (40%), Positives = 60/110 (54%), Frame = +2
Query: 101 LNKMSAATFAAHIAGAGFVGLKSNSSNLCPSTGSIGWK-RKIVSNGSKTYCMKTWNPINN 277
+N++S A A +A F GLKS + P+T I SNG K CMK W +
Sbjct: 14 INRVSPAQ-ATMVAP--FTGLKSTP--VFPTTRKTNSDITSITSNGGKVQCMKVWPTLGM 68
Query: 278 KKFETLSYLPPLSDESIAKED*LHAQERDGSLALKFD-ELGCVRXENSHMPG 430
KKFETLSYLPPL+ E +AK + G L+F+ E G V E++ +PG
Sbjct: 69 KKFETLSYLPPLTREQLAKPSCI------GP-CLEFELEHGLVYREHARVPG 113
Score = 145 (51.0 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 25/47 (53%), Positives = 34/47 (72%), Frame = +3
Query: 396 GVFVXKTAICQGYYDGRXWTLWKLPMFACSDSSQVLKEIHECRRVYP 536
G+ + A GYYDGR WT+WKLPMF C+D++QVLKE+ E + +P
Sbjct: 102 GLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHP 148
>gi|1084280|pir||S53636 ribulose-bisphosphate carboxylase (EC 4.1.1.39) short
chain precursor - Euglena gracilis >gi|642977|emb|CAA55779.1|
(X79152) ribulose-bisphosphate carboxylase [Euglena gracilis]
Length = 1275
Frame 3 hits (HSPs): ____ ____ ____ _____ ____ ____ _____ ____
Frame 2 hits (HSPs): __ ___ ___ ___ __ ___ ___ __
__________________________________________________
Database sequence: | | | | 1275
0 500 1000
Plus Strand HSPs:
Score = 186 (65.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 36/84 (42%), Positives = 51/84 (60%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPL-----P*N-LMSWGVFVXKTAICQGYYDGRXWTLWKLP 470
P + +++D ++ KG+ P P N ++ V + GYYD R WT+WKLP
Sbjct: 298 PLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLP 357
Query: 471 MFACSDSSQVLKEIHECRRVYPKC 542
MF C+D+SQVL+EI ECRR YP+C
Sbjct: 358 MFGCTDASQVLREISECRRAYPQC 381
Score = 186 (65.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 36/84 (42%), Positives = 51/84 (60%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPL-----P*N-LMSWGVFVXKTAICQGYYDGRXWTLWKLP 470
P + +++D ++ KG+ P P N ++ V + GYYD R WT+WKLP
Sbjct: 442 PLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLP 501
Query: 471 MFACSDSSQVLKEIHECRRVYPKC 542
MF C+D+SQVL+EI ECRR YP+C
Sbjct: 502 MFGCTDASQVLREISECRRAYPQC 525
Score = 186 (65.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 36/84 (42%), Positives = 51/84 (60%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPL-----P*N-LMSWGVFVXKTAICQGYYDGRXWTLWKLP 470
P + +++D ++ KG+ P P N ++ V + GYYD R WT+WKLP
Sbjct: 586 PLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLP 645
Query: 471 MFACSDSSQVLKEIHECRRVYPKC 542
MF C+D+SQVL+EI ECRR YP+C
Sbjct: 646 MFGCTDASQVLREISECRRAYPQC 669
Score = 186 (65.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 36/84 (42%), Positives = 51/84 (60%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPL-----P*N-LMSWGVFVXKTAICQGYYDGRXWTLWKLP 470
P + +++D ++ KG+ P P N ++ V + GYYD R WT+WKLP
Sbjct: 730 PLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLP 789
Query: 471 MFACSDSSQVLKEIHECRRVYPKC 542
MF C+D+SQVL+EI ECRR YP+C
Sbjct: 790 MFGCTDASQVLREISECRRAYPQC 813
Score = 186 (65.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 36/84 (42%), Positives = 51/84 (60%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPL-----P*N-LMSWGVFVXKTAICQGYYDGRXWTLWKLP 470
P + +++D ++ KG+ P P N ++ V + GYYD R WT+WKLP
Sbjct: 874 PLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLP 933
Query: 471 MFACSDSSQVLKEIHECRRVYPKC 542
MF C+D+SQVL+EI ECRR YP+C
Sbjct: 934 MFGCTDASQVLREISECRRAYPQC 957
Score = 186 (65.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 36/84 (42%), Positives = 51/84 (60%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPL-----P*N-LMSWGVFVXKTAICQGYYDGRXWTLWKLP 470
P + +++D ++ KG+ P P N ++ V + GYYD R WT+WKLP
Sbjct: 1018 PLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLP 1077
Query: 471 MFACSDSSQVLKEIHECRRVYPKC 542
MF C+D+SQVL+EI ECRR YP+C
Sbjct: 1078 MFGCTDASQVLREISECRRAYPQC 1101
Score = 186 (65.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 36/84 (42%), Positives = 51/84 (60%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPL-----P*N-LMSWGVFVXKTAICQGYYDGRXWTLWKLP 470
P + +++D ++ KG+ P P N ++ V + GYYD R WT+WKLP
Sbjct: 1162 PLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLP 1221
Query: 471 MFACSDSSQVLKEIHECRRVYPKC 542
MF C+D+SQVL+EI ECRR YP+C
Sbjct: 1222 MFGCTDASQVLREISECRRAYPQC 1245
Score = 186 (65.5 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 36/84 (42%), Positives = 51/84 (60%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPL-----P*N-LMSWGVFVXKTAICQGYYDGRXWTLWKLP 470
P + +++D ++ KG+ P P N ++ V + GYYD R WT+WKLP
Sbjct: 154 PLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLP 213
Query: 471 MFACSDSSQVLKEIHECRRVYPKC 542
MF C+D+SQVL+EI ECRR YP+C
Sbjct: 214 MFGCTDASQVLREISECRRAYPQC 237
Score = 135 (47.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 29/50 (58%), Positives = 34/50 (68%), Frame = +2
Query: 188 PS-TGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKE 337
PS + S W ++ G K MK WNP+NNKKFET SYLPPLSD IAK+
Sbjct: 260 PSGSSSSSWGMAAMT-GEKD--MKVWNPVNNKKFETFSYLPPLSDAQIAKQ 307
Score = 135 (47.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 29/50 (58%), Positives = 34/50 (68%), Frame = +2
Query: 188 PS-TGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKE 337
PS + S W ++ G K MK WNP+NNKKFET SYLPPLSD IAK+
Sbjct: 404 PSGSSSSSWGMAAMT-GEKD--MKVWNPVNNKKFETFSYLPPLSDAQIAKQ 451
Score = 135 (47.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 29/50 (58%), Positives = 34/50 (68%), Frame = +2
Query: 188 PS-TGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKE 337
PS + S W ++ G K MK WNP+NNKKFET SYLPPLSD IAK+
Sbjct: 548 PSGSSSSSWGMAAMT-GEKE--MKVWNPVNNKKFETFSYLPPLSDAQIAKQ 595
Score = 135 (47.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 29/50 (58%), Positives = 34/50 (68%), Frame = +2
Query: 188 PS-TGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKE 337
PS + S W ++ G K MK WNP+NNKKFET SYLPPLSD IAK+
Sbjct: 692 PSGSSSSSWGMAAMT-GEKD--MKVWNPVNNKKFETFSYLPPLSDAQIAKQ 739
Score = 135 (47.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 29/50 (58%), Positives = 34/50 (68%), Frame = +2
Query: 188 PS-TGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKE 337
PS + S W ++ G K MK WNP+NNKKFET SYLPPLSD IAK+
Sbjct: 836 PSGSSSSSWGMAAMT-GEKE--MKVWNPVNNKKFETFSYLPPLSDAQIAKQ 883
Score = 135 (47.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 29/50 (58%), Positives = 34/50 (68%), Frame = +2
Query: 188 PS-TGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKE 337
PS + S W ++ G K MK WNP+NNKKFET SYLPPLSD IAK+
Sbjct: 980 PSGSSSSSWGMAAMT-GEKE--MKVWNPVNNKKFETFSYLPPLSDAQIAKQ 1027
Score = 135 (47.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 29/50 (58%), Positives = 34/50 (68%), Frame = +2
Query: 188 PS-TGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKE 337
PS + S W ++ G K MK WNP+NNKKFET SYLPPLSD IAK+
Sbjct: 1124 PSGSSSSSWGMAAMT-GEKD--MKVWNPVNNKKFETFSYLPPLSDAQIAKQ 1171
Score = 132 (46.5 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 23/29 (79%), Positives = 25/29 (86%), Frame = +2
Query: 251 MKTWNPINNKKFETLSYLPPLSDESIAKE 337
MK WNP+NNKKFET SYLPPLSD IAK+
Sbjct: 135 MKVWNPVNNKKFETFSYLPPLSDAQIAKQ 163
>gi|132083|sp|P04714|RBS1_PETSP RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
SSU8 PRECURSOR (RUBISCO SMALL SUBUNIT SSU8) >gi|68086|pir||RKPJS8
ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain (ssu8)
precursor - garden petunia >gi|20491|emb|CAA27444.1| (X03820)
ribulose 1,5-bisphosphate carboxylase [Petunia x hybrida]
Length = 180
Frame 3 hits (HSPs): ____________________
Frame 2 hits (HSPs): __________________
Frame 1 hits (HSPs): ___
Annotated Domains: ____________________________________________
__________________________________________________
Database sequence: | | | | | 180
0 50 100 150
__________________
Annotated Domains:
PFAM RuBisCO_small: Ribulose bisphosphate car 58..177
PRINTS RUBISCOSMALL1: RUBISCO small subunit mot 19..36
PRINTS RUBISCOSMALL2: RUBISCO small subunit mot 46..64
PRINTS RUBISCOSMALL3: RUBISCO small subunit mot 67..93
PRINTS RUBISCOSMALL4: RUBISCO small subunit mot 95..110
PRINTS RUBISCOSMALL5: RUBISCO small subunit mot 117..146
PRINTS RUBISCOSMALL6: RUBISCO small subunit mot 151..177
PRODOM PD000564: RBS(27) RBS2(12) RBS1(12) 21..56
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 58..176
PROSITE SOYBEAN_KUNITZ: Soybean trypsin inhibito 75..91
__________________
Plus Strand HSPs:
Score = 160 (56.3 bits), Expect = 3.1e-23, Sum P(2) = 3.1e-23
Identities = 30/70 (42%), Positives = 42/70 (60%), Frame = +3
Query: 327 LQRKIDYMLKKGMDPLP*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSDSSQVLK 506
L ++I+Y+L KG P G + YYDGR WT+WKLPMF C+D++QVL
Sbjct: 83 LLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLG 142
Query: 507 EIHECRRVYP 536
E+ E ++ YP
Sbjct: 143 ELQEAKKAYP 152
Score = 132 (46.5 bits), Expect = 3.1e-23, Sum P(2) = 3.1e-23
Identities = 30/64 (46%), Positives = 37/64 (57%), Frame = +2
Query: 146 AGFVGLKSNSSNLCPSTGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDES 325
A F GLKS S S ++ I SNG + CM+ W P KK+ETLSYLP L+DE
Sbjct: 24 APFNGLKSAVSFPVSSKQNLDIT-SIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQ 82
Query: 326 IAKE 337
+ KE
Sbjct: 83 LLKE 86
Score = 50 (17.6 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 7/8 (87%), Positives = 8/8 (100%), Frame = +1
Query: 358 KGWIPCLE 381
KGW+PCLE
Sbjct: 93 KGWVPCLE 100
>gi|99447|pir||S18022 ribulose-bisphosphate carboxylase (EC 4.1.1.39) small
chain precursor (clone B1) - green alga (Batophora oerstedii)
Length = 175
Frame 3 hits (HSPs): ________________________
Frame 2 hits (HSPs): ________________
Frame 1 hits (HSPs): ___________
Annotated Domains: __________
__________________________________________________
Database sequence: | | | | | 175
0 50 100 150
__________________
Annotated Domains:
Entrez domain: transit peptide (chloroplast) 1..35
__________________
Plus Strand HSPs:
Score = 133 (46.8 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 29/82 (35%), Positives = 41/82 (50%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPLP*NLMSWGVFVX-----KTAICQG-YYDGRXWTLWKLP 470
P + + +++DY+L+ P S +V + C Y D R WT+WKLP
Sbjct: 55 PLTDDQITKQVDYILRNNWTPCLEFAGSDQAYVTHDNTVRMGDCASTYQDNRYWTMWKLP 114
Query: 471 MFACSDSSQVLKEIHECRRVYP 536
MF C D SQVL EI C + +P
Sbjct: 115 MFGCIDGSQVLTEISACTKAFP 136
Score = 125 (44.0 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 26/52 (50%), Positives = 34/52 (65%), Frame = +2
Query: 185 CPSTGSIGWKRKIVSNG--SKTYCMKTWNPINNKKFETLSYLPPLSDESIAKE 337
C +T I + + +SNG SK+ M W P NNK FET SYLPPL+D+ I K+
Sbjct: 13 CATTKQIV-RPRFLSNGTISKSRAMMVWQPFNNKFFETFSYLPPLTDDQITKQ 64
Score = 51 (18.0 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 15/39 (38%), Positives = 16/39 (41%), Frame = +1
Query: 355 RKGWIPCLEI**VGVCSXRKQPYARGTMTVGXGHCGS-YQ 471
R W PCLE + Q Y TV G C S YQ
Sbjct: 70 RNNWTPCLEF------AGSDQAYVTHDNTVRMGDCASTYQ 103
>gi|1352820|sp|P26985|RBS_BATOE RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|2654261|emb|CAA40538.1|
(X57266) ribulose bisphosphate carboxylase small subunit
[Batophora oerstedii]
Length = 175
Frame 3 hits (HSPs): ________________________
Frame 2 hits (HSPs): ________________
Frame 1 hits (HSPs): ___________
Annotated Domains: ______________________________________________
__________________________________________________
Database sequence: | | | | | 175
0 50 100 150
__________________
Annotated Domains:
DOMO DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 36..161
PFAM RuBisCO_small: Ribulose bisphosphate car 36..161
PRODOM PD054722: RBS_BATOE 1..34
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 36..160
__________________
Plus Strand HSPs:
Score = 133 (46.8 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 29/82 (35%), Positives = 41/82 (50%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPLP*NLMSWGVFVX-----KTAICQG-YYDGRXWTLWKLP 470
P + + +++DY+L+ P S +V + C Y D R WT+WKLP
Sbjct: 55 PLTDDQITKQVDYILRNNWTPCLEFAGSDQAYVTHDNTVRMGDCASTYQDNRYWTMWKLP 114
Query: 471 MFACSDSSQVLKEIHECRRVYP 536
MF C D SQVL EI C + +P
Sbjct: 115 MFGCIDGSQVLTEISACTKAFP 136
Score = 125 (44.0 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 26/52 (50%), Positives = 34/52 (65%), Frame = +2
Query: 185 CPSTGSIGWKRKIVSNG--SKTYCMKTWNPINNKKFETLSYLPPLSDESIAKE 337
C +T I + + +SNG SK+ M W P NNK FET SYLPPL+D+ I K+
Sbjct: 13 CATTKQIV-RPRFLSNGTISKSRAMMVWEPFNNKFFETFSYLPPLTDDQITKQ 64
Score = 51 (18.0 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 15/39 (38%), Positives = 16/39 (41%), Frame = +1
Query: 355 RKGWIPCLEI**VGVCSXRKQPYARGTMTVGXGHCGS-YQ 471
R W PCLE + Q Y TV G C S YQ
Sbjct: 70 RNNWTPCLEF------AGSDQAYVTHDNTVRMGDCASTYQ 103
>gi|228356|prf||1803224A RuBisCO:SUBUNIT=small:ISOTYPE=1 [Batophora oerstedii]
Length = 175
Frame 3 hits (HSPs): ________________________
Frame 2 hits (HSPs): ________________
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | 175
0 50 100 150
Plus Strand HSPs:
Score = 133 (46.8 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 29/82 (35%), Positives = 41/82 (50%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPLP*NLMSWGVFVX-----KTAICQG-YYDGRXWTLWKLP 470
P + + +++DY+L+ P S +V + C Y D R WT+WKLP
Sbjct: 55 PLTDDQITKQVDYILRNNWTPCLEFAGSDQAYVTHDNTVRMGDCASTYQDNRYWTMWKLP 114
Query: 471 MFACSDSSQVLKEIHECRRVYP 536
MF C D SQVL EI C + +P
Sbjct: 115 MFGCIDGSQVLTEISACTKAFP 136
Score = 124 (43.7 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 26/52 (50%), Positives = 34/52 (65%), Frame = +2
Query: 185 CPSTGSIGWKRKIVSNG--SKTYCMKTWNPINNKKFETLSYLPPLSDESIAKE 337
C +T I + + +SNG SK+ M W P NNK FET SYLPPL+D+ I K+
Sbjct: 13 CATTKQIV-RPRFLSNGTISKSRAMMVWXPFNNKFFETFSYLPPLTDDQITKQ 64
Score = 51 (18.0 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 15/39 (38%), Positives = 16/39 (41%), Frame = +1
Query: 355 RKGWIPCLEI**VGVCSXRKQPYARGTMTVGXGHCGS-YQ 471
R W PCLE + Q Y TV G C S YQ
Sbjct: 70 RNNWTPCLEF------AGSDQAYVTHDNTVRMGDCASTYQ 103
>gi|6440788|dbj|BAA78582.1| (AU066498) ribulose-bisphosphate carboxylase small
chain precursor [Chlamydomonas sp. HS-5]
Length = 158
Frame 3 hits (HSPs): _________________________
Frame 2 hits (HSPs): __________
Frame 1 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | 158
0 50 100 150
Plus Strand HSPs:
Score = 153 (53.9 bits), Expect = 3.6e-19, Sum P(2) = 3.6e-19
Identities = 29/76 (38%), Positives = 45/76 (59%), Frame = +3
Query: 327 LQRKIDYMLKKGMDPL------P*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSD 488
+ R++DY+++ G P + +S V + + YYD R WT+WKLPMF C+D
Sbjct: 50 IARQVDYVIRNGYTPCLEFADAAYSFVSNENTVRFSGVSANYYDNRYWTMWKLPMFGCTD 109
Query: 489 SSQVLKEIHECRRVYP 536
++QVLKE+ C R +P
Sbjct: 110 AAQVLKEVALCTRAFP 125
Score = 100 (35.2 bits), Expect = 3.6e-19, Sum P(2) = 3.6e-19
Identities = 16/28 (57%), Positives = 22/28 (78%), Frame = +2
Query: 254 KTWNPINNKKFETLSYLPPLSDESIAKE 337
K W P+NNK++ET SYLP L+ E IA++
Sbjct: 26 KVWQPVNNKQYETFSYLPALTSEQIARQ 53
Score = 37 (13.0 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 6/9 (66%), Positives = 7/9 (77%), Frame = +1
Query: 355 RKGWIPCLE 381
R G+ PCLE
Sbjct: 59 RNGYTPCLE 67
>gi|4098852|gb|AAD00448.1| (U80810) ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit [Chloromonas sp. ANT3]
Length = 140
Frame 3 hits (HSPs): _____________________________
Frame 2 hits (HSPs): ___________
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | 140
0 50 100
Plus Strand HSPs:
Score = 150 (52.8 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
Identities = 31/77 (40%), Positives = 44/77 (57%), Frame = +3
Query: 327 LQRKIDYMLKKGMDPLP*NLMSWGVFVXK--TAICQG----YYDGRXWTLWKLPMFACSD 488
+ +++DY+++ G P FV T +G YYD R WT+WKLPMF C+D
Sbjct: 26 IAKQVDYVIRNGWTPCLEFADPSSSFVSNENTVRFRGASSNYYDNRYWTMWKLPMFGCTD 85
Query: 489 SSQVLKEIHECRRVYPK 539
+SQVLKEI C +P+
Sbjct: 86 ASQVLKEIAACNAAFPE 102
Score = 102 (35.9 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
Identities = 17/28 (60%), Positives = 22/28 (78%), Frame = +2
Query: 254 KTWNPINNKKFETLSYLPPLSDESIAKE 337
K W P+NNK++ET SYLP L+ E IAK+
Sbjct: 2 KVWQPVNNKQYETFSYLPALTTEQIAKQ 29
Score = 46 (16.2 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 7/9 (77%), Positives = 7/9 (77%), Frame = +1
Query: 355 RKGWIPCLE 381
R GW PCLE
Sbjct: 35 RNGWTPCLE 43
>gi|3914594|sp|Q38692|RBS6_ACECL RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
6 PRECURSOR (RUBISCO SMALL SUBUNIT 6) >gi|2654375|emb|CAA82266.1|
(Z28640) ribulosebiphosphate carboxylase, small subunit
[Acetabularia cliftonii]
Length = 182
Frame 3 hits (HSPs): ________________________
Frame 2 hits (HSPs): ____________________
Annotated Domains: ______________________________________________
__________________________________________________
Database sequence: | | | | | 182
0 50 100 150
__________________
Annotated Domains:
PFAM RuBisCO_small: Ribulose bisphosphate car 43..168
PRODOM PD007176: RBS4(2) RBS5(2) 1..41
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 43..167
__________________
Plus Strand HSPs:
Score = 135 (47.5 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
Identities = 29/82 (35%), Positives = 40/82 (48%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPLP*NLMSWGVFVX-KTAICQG-----YYDGRXWTLWKLP 470
P + +++DY+L P S + + I G Y D R WT+WKLP
Sbjct: 62 PLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLP 121
Query: 471 MFACSDSSQVLKEIHECRRVYP 536
MF C+D SQVL EI C + +P
Sbjct: 122 MFGCTDGSQVLTEIQACTKAFP 143
Score = 117 (41.2 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
Identities = 28/70 (40%), Positives = 34/70 (48%), Frame = +2
Query: 128 AAHIAGAGFVGLKSNSSNLCPSTGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLP 307
AA + + K S + P SI S K M W P NNK FET SYLP
Sbjct: 2 AATMMSKTIISSKQCSKPIAPPKVSINKGFVNTSAAIKNREMMVWQPFNNKMFETFSYLP 61
Query: 308 PLSDESIAKE 337
PL+DE I+K+
Sbjct: 62 PLTDEQISKQ 71
>gi|132114|sp|P16133|RBS5_ACECL RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 5
PRECURSOR (RUBISCO SMALL SUBUNIT 5) >gi|68107|pir||RKJK5C
ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain 5
precursor - Acetabularia cliftonii >gi|732548|emb|CAA36107.1|
(X51810) ribulose bisphosphate carboxylase precursor [Acetabularia
cliftonii]
Length = 184
Frame 3 hits (HSPs): ____________
Frame 2 hits (HSPs): ________________
Annotated Domains: ______________________________________________
__________________________________________________
Database sequence: | | | | | 184
0 50 100 150
__________________
Annotated Domains:
PFAM RuBisCO_small: Ribulose bisphosphate car 45..170
PRODOM PD007176: RBS4(2) RBS5(2) 1..43
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 45..169
__________________
Plus Strand HSPs:
Score = 134 (47.2 bits), Expect = 5.8e-19, Sum P(2) = 5.8e-19
Identities = 21/39 (53%), Positives = 26/39 (66%), Frame = +3
Query: 420 ICQGYYDGRXWTLWKLPMFACSDSSQVLKEIHECRRVYP 536
+ Y D R WT+WKLPMF C+D SQVL EI C + +P
Sbjct: 107 VASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFP 145
Score = 117 (41.2 bits), Expect = 5.8e-19, Sum P(2) = 5.8e-19
Identities = 25/60 (41%), Positives = 34/60 (56%), Frame = +2
Query: 158 GLKSNSSNLCPSTGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKE 337
G +SS +T +G+ + S+ M W P NNK FET SYLPPL+DE I+K+
Sbjct: 16 GCARSSSIPKVATNKMGFASAVAMKKSRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQ 73
>gi|132100|sp|P16131|RBS3_ACECL RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 3
PRECURSOR (RUBISCO SMALL SUBUNIT 3) >gi|68108|pir||RKJK3C
ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain 3
precursor - Acetabularia cliftonii >gi|732546|emb|CAA36105.1|
(X51808) ribulose bisphosphate carboxylase precursor [Acetabularia
cliftonii]
Length = 183
Frame 3 hits (HSPs): ________________________
Frame 2 hits (HSPs): ___________
Annotated Domains: ______________________________________________
__________________________________________________
Database sequence: | | | | | 183
0 50 100 150
__________________
Annotated Domains:
PFAM RuBisCO_small: Ribulose bisphosphate car 44..169
PRODOM PD165402: RBS3_ACECL 1..42
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 44..168
__________________
Plus Strand HSPs:
Score = 134 (47.2 bits), Expect = 9.4e-19, Sum P(2) = 9.4e-19
Identities = 29/82 (35%), Positives = 40/82 (48%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPLP*NLMSWGVFVX-KTAICQG-----YYDGRXWTLWKLP 470
P + +++DY+L P S + + I G Y D R WT+WKLP
Sbjct: 63 PLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVSSTYQDNRYWTMWKLP 122
Query: 471 MFACSDSSQVLKEIHECRRVYP 536
MF C+D SQVL EI C + +P
Sbjct: 123 MFGCTDGSQVLSEIQACTKAFP 144
Score = 115 (40.5 bits), Expect = 9.4e-19, Sum P(2) = 9.4e-19
Identities = 22/39 (56%), Positives = 26/39 (66%), Frame = +2
Query: 227 SNGSKTYC--MKTWNPINNKKFETLSYLPPLSDESIAKE 337
SN + C M W P NNK FET SYLPPL+DE I+K+
Sbjct: 34 SNAAVQKCRDMMVWQPFNNKMFETFSYLPPLTDEQISKQ 72
>gi|132108|sp|P16132|RBS4_ACECL RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 4
PRECURSOR (RUBISCO SMALL SUBUNIT 4) >gi|68106|pir||RKJK4C
ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain 4
precursor - Acetabularia cliftonii >gi|732547|emb|CAA36106.1|
(X51809) ribulose bisphosphate carboxylase precursor [Acetabularia
cliftonii]
Length = 182
Frame 3 hits (HSPs): ____________
Frame 2 hits (HSPs): _________
Annotated Domains: ______________________________________________
__________________________________________________
Database sequence: | | | | | 182
0 50 100 150
__________________
Annotated Domains:
PFAM RuBisCO_small: Ribulose bisphosphate car 43..168
PRODOM PD007176: RBS4(2) RBS5(2) 1..41
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 43..167
__________________
Plus Strand HSPs:
Score = 134 (47.2 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 21/39 (53%), Positives = 26/39 (66%), Frame = +3
Query: 420 ICQGYYDGRXWTLWKLPMFACSDSSQVLKEIHECRRVYP 536
+ Y D R WT+WKLPMF C+D SQVL EI C + +P
Sbjct: 105 VASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFP 143
Score = 111 (39.1 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 19/29 (65%), Positives = 22/29 (75%), Frame = +2
Query: 251 MKTWNPINNKKFETLSYLPPLSDESIAKE 337
M W P NNK FET SYLPPL+DE I+K+
Sbjct: 43 MMVWQPFNNKMFETFSYLPPLTDEQISKQ 71
>gi|132109|sp|P16137|RBS4_ACEME RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 4
PRECURSOR (RUBISCO SMALL SUBUNIT 4) >gi|68104|pir||RKJK4M
ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain 4
precursor - Acetabularia mediterranea >gi|732554|emb|CAA36111.1|
(X51814) ribulose bisphosphate carboxylase precursor [Acetabularia
mediterranea]
Length = 182
Frame 3 hits (HSPs): ____________
Frame 2 hits (HSPs): _____________
Annotated Domains: ______________________________________________
__________________________________________________
Database sequence: | | | | | 182
0 50 100 150
__________________
Annotated Domains:
PFAM RuBisCO_small: Ribulose bisphosphate car 43..168
PRODOM PD007176: RBS4(2) RBS5(2) 1..41
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 43..167
__________________
Plus Strand HSPs:
Score = 132 (46.5 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 21/39 (53%), Positives = 25/39 (64%), Frame = +3
Query: 420 ICQGYYDGRXWTLWKLPMFACSDSSQVLKEIHECRRVYP 536
+ Y D R WT+WKLPMF C+D SQVL EI C +P
Sbjct: 105 VASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFP 143
Score = 112 (39.4 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 22/43 (51%), Positives = 27/43 (62%), Frame = +2
Query: 212 KRKIVSN-GSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKE 337
KR S +K M W P NNK FET S+LPPL+DE I+K+
Sbjct: 29 KRSFASTVANKNREMMVWQPFNNKMFETFSFLPPLTDEQISKQ 71
>gi|132101|sp|P16136|RBS3_ACEME RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 3
PRECURSOR (RUBISCO SMALL SUBUNIT 3) >gi|68102|pir||RKJK3M
ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain 3
precursor - Acetabularia mediterranea >gi|732553|emb|CAA36110.1|
(X51813) ribulose bisphophate carboxylase precursor [Acetabularia
mediterranea]
Length = 182
Frame 3 hits (HSPs): ____________
Frame 2 hits (HSPs): __________
Annotated Domains: ______________________________________________
__________________________________________________
Database sequence: | | | | | 182
0 50 100 150
__________________
Annotated Domains:
PFAM RuBisCO_small: Ribulose bisphosphate car 43..168
PRODOM PD007176: RBS4(2) RBS5(2) 1..40
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 43..167
__________________
Plus Strand HSPs:
Score = 135 (47.5 bits), Expect = 4.0e-18, Sum P(2) = 4.0e-18
Identities = 21/39 (53%), Positives = 27/39 (69%), Frame = +3
Query: 420 ICQGYYDGRXWTLWKLPMFACSDSSQVLKEIHECRRVYP 536
+ Y D R WT+WKLPMF C+D+SQVL EI C + +P
Sbjct: 105 VASTYQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFP 143
Score = 108 (38.0 bits), Expect = 4.0e-18, Sum P(2) = 4.0e-18
Identities = 19/34 (55%), Positives = 24/34 (70%), Frame = +2
Query: 236 SKTYCMKTWNPINNKKFETLSYLPPLSDESIAKE 337
+K M W P NNK FET S+LPPL+DE I+K+
Sbjct: 38 TKNRGMMVWQPFNNKMFETFSFLPPLTDEQISKQ 71
>gi|132073|sp|P16134|RBS1_ACEME RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1
PRECURSOR (RUBISCO SMALL SUBUNIT 1) >gi|68103|pir||RKJK1M
ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain 1
precursor - Acetabularia mediterranea >gi|732551|emb|CAA36108.1|
(X51811) ribulose bisphosphate carboxylase precursor [Acetabularia
mediterranea]
Length = 182
Frame 3 hits (HSPs): ____________
Frame 2 hits (HSPs): _________
Annotated Domains: ______________________________________________
__________________________________________________
Database sequence: | | | | | 182
0 50 100 150
__________________
Annotated Domains:
DOMO DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 43..168
PFAM RuBisCO_small: Ribulose bisphosphate car 43..168
PRODOM PD007176: RBS4(2) RBS5(2) 1..41
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 43..167
__________________
Plus Strand HSPs:
Score = 134 (47.2 bits), Expect = 6.4e-18, Sum P(2) = 6.4e-18
Identities = 21/39 (53%), Positives = 26/39 (66%), Frame = +3
Query: 420 ICQGYYDGRXWTLWKLPMFACSDSSQVLKEIHECRRVYP 536
+ Y D R WT+WKLPMF C+D SQVL EI C + +P
Sbjct: 105 VASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFP 143
Score = 107 (37.7 bits), Expect = 6.4e-18, Sum P(2) = 6.4e-18
Identities = 18/29 (62%), Positives = 22/29 (75%), Frame = +2
Query: 251 MKTWNPINNKKFETLSYLPPLSDESIAKE 337
M W P NNK FET S+LPPL+DE I+K+
Sbjct: 43 MMVWQPFNNKMFETFSFLPPLTDEQISKQ 71
>gi|132089|sp|P16135|RBS2_ACEME RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 2
PRECURSOR (RUBISCO SMALL SUBUNIT 2) >gi|732552|emb|CAA36109.1|
(X51812) ribulose bisphosphate carboxylase precursor [Acetabularia
mediterranea]
Length = 173
Frame 3 hits (HSPs): ____________
Frame 2 hits (HSPs): _________
Annotated Domains: _____________________________________
__________________________________________________
Database sequence: | | | | | 173
0 50 100 150
__________________
Annotated Domains:
PFAM RuBisCO_small: Ribulose bisphosphate car 34..159
__________________
Plus Strand HSPs:
Score = 134 (47.2 bits), Expect = 6.4e-18, Sum P(2) = 6.4e-18
Identities = 21/39 (53%), Positives = 26/39 (66%), Frame = +3
Query: 420 ICQGYYDGRXWTLWKLPMFACSDSSQVLKEIHECRRVYP 536
+ Y D R WT+WKLPMF C+D SQVL EI C + +P
Sbjct: 96 VASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFP 134
Score = 107 (37.7 bits), Expect = 6.4e-18, Sum P(2) = 6.4e-18
Identities = 18/29 (62%), Positives = 22/29 (75%), Frame = +2
Query: 251 MKTWNPINNKKFETLSYLPPLSDESIAKE 337
M W P NNK FET S+LPPL+DE I+K+
Sbjct: 34 MMVWQPFNNKMFETFSFLPPLTDEQISKQ 62
>gi|132115|sp|P16138|RBS5_ACEME RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 5
PRECURSOR (RUBISCO SMALL SUBUNIT 5) >gi|68105|pir||RKJK5M
ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain 5
precursor - Acetabularia mediterranea >gi|732555|emb|CAA36112.1|
(X51815) ribulose bisphosphate carboxylase precursor [Acetabularia
mediterranea]
Length = 183
Frame 3 hits (HSPs): ____________
Frame 2 hits (HSPs): __________
Annotated Domains: ______________________________________________
__________________________________________________
Database sequence: | | | | | 183
0 50 100 150
__________________
Annotated Domains:
PFAM RuBisCO_small: Ribulose bisphosphate car 44..169
PRODOM PD007176: RBS4(2) RBS5(2) 1..42
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 44..168
__________________
Plus Strand HSPs:
Score = 132 (46.5 bits), Expect = 8.2e-18, Sum P(2) = 8.2e-18
Identities = 21/39 (53%), Positives = 25/39 (64%), Frame = +3
Query: 420 ICQGYYDGRXWTLWKLPMFACSDSSQVLKEIHECRRVYP 536
+ Y D R WT+WKLPMF C+D SQVL EI C +P
Sbjct: 106 VASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFP 144
Score = 108 (38.0 bits), Expect = 8.2e-18, Sum P(2) = 8.2e-18
Identities = 19/34 (55%), Positives = 24/34 (70%), Frame = +2
Query: 236 SKTYCMKTWNPINNKKFETLSYLPPLSDESIAKE 337
+K M W P NNK FET S+LPPL+DE I+K+
Sbjct: 39 NKNRDMMVWQPFNNKMFETFSFLPPLTDEQISKQ 72
>gi|3914595|sp|Q38693|RBS7_ACECL RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
7 PRECURSOR (RUBISCO SMALL SUBUNIT 7) >gi|2654374|emb|CAA82265.1|
(Z28636) ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Acetabularia cliftonii]
Length = 183
Frame 3 hits (HSPs): ____________
Frame 2 hits (HSPs): _________
Annotated Domains: ______________________________________________
__________________________________________________
Database sequence: | | | | | 183
0 50 100 150
__________________
Annotated Domains:
PFAM RuBisCO_small: Ribulose bisphosphate car 44..169
PRODOM PD007176: RBS4(2) RBS5(2) 1..42
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 44..168
__________________
Plus Strand HSPs:
Score = 128 (45.1 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 19/39 (48%), Positives = 26/39 (66%), Frame = +3
Query: 420 ICQGYYDGRXWTLWKLPMFACSDSSQVLKEIHECRRVYP 536
+ Y D R WT+WKLPMF C+D SQVL ++ C + +P
Sbjct: 106 VASTYQDNRYWTMWKLPMFGCTDGSQVLSDMQACTKAFP 144
Score = 111 (39.1 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 19/29 (65%), Positives = 22/29 (75%), Frame = +2
Query: 251 MKTWNPINNKKFETLSYLPPLSDESIAKE 337
M W P NNK FET SYLPPL+DE I+K+
Sbjct: 44 MMVWQPFNNKMFETFSYLPPLTDEQISKQ 72
>gi|169216|gb|AAA33716.1| (M29641) ribulose 1,5-bisphosphate carboxylase
[Petunia x hybrida]
Length = 106
Frame 3 hits (HSPs): __________________________________
Frame 2 hits (HSPs): _________
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | 106
0 20 40 60 80 100
Plus Strand HSPs:
Score = 164 (57.7 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 32/70 (45%), Positives = 46/70 (65%), Frame = +3
Query: 327 LQRKIDYMLKKGMDP-LP*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSDSSQVL 503
L ++++Y+L KG P L L ++ A GYYDGR WT+WKLPMF C+D++QVL
Sbjct: 15 LFKEVEYLLNKGWVPCLEFELKHKFIYREYHA-SPGYYDGRYWTMWKLPMFGCTDATQVL 73
Query: 504 KEIHECRRVYP 536
E+ E ++ YP
Sbjct: 74 GELQEAKKAYP 84
Score = 60 (21.1 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 11/18 (61%), Positives = 14/18 (77%), Frame = +2
Query: 284 FETLSYLPPLSDESIAKE 337
+ETLSY P L+DE + KE
Sbjct: 1 YETLSYFPDLTDEQLFKE 18
Score = 50 (17.6 bits), Expect = 0.78, Sum P(2) = 0.54
Identities = 7/8 (87%), Positives = 8/8 (100%), Frame = +1
Query: 358 KGWIPCLE 381
KGW+PCLE
Sbjct: 25 KGWVPCLE 32
>gi|82257|pir||A05119 ribulose-bisphosphate carboxylase (EC 4.1.1.39) small
chain - petunia (clone pSSU 117) (fragment)
Length = 106
Frame 3 hits (HSPs): __________________________________
Frame 2 hits (HSPs): _________
Frame 1 hits (HSPs): ____
Annotated Domains: _________
__________________________________________________
Database sequence: | | | | | | | 106
0 20 40 60 80 100
__________________
Annotated Domains:
PROSITE SOYBEAN_KUNITZ: Soybean trypsin inhibito 7..23
__________________
Plus Strand HSPs:
Score = 164 (57.7 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
Identities = 32/70 (45%), Positives = 46/70 (65%), Frame = +3
Query: 327 LQRKIDYMLKKGMDP-LP*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSDSSQVL 503
L ++++Y+L KG P L L ++ A GYYDGR WT+WKLPMF C+D++QVL
Sbjct: 15 LLKEVEYLLDKGWVPCLEFELKHKFIYREYHA-SPGYYDGRYWTMWKLPMFGCTDATQVL 73
Query: 504 KEIHECRRVYP 536
E+ E ++ YP
Sbjct: 74 GELQEAKKAYP 84
Score = 58 (20.4 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
Identities = 11/18 (61%), Positives = 14/18 (77%), Frame = +2
Query: 284 FETLSYLPPLSDESIAKE 337
+ETLSYLP L+ E + KE
Sbjct: 1 YETLSYLPDLTGEQLLKE 18
Score = 50 (17.6 bits), Expect = 1.6, Sum P(2) = 0.80
Identities = 7/8 (87%), Positives = 8/8 (100%), Frame = +1
Query: 358 KGWIPCLE 381
KGW+PCLE
Sbjct: 25 KGWVPCLE 32
>gi|3914592|sp|Q96542|RBS_BETVE RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|1536889|emb|CAA69102.1|
(Y07779) ribulose-bisphosphate carboxylase [Betula pendula]
Length = 182
Frame 3 hits (HSPs): ______________________
Frame 2 hits (HSPs): ______________________________
Annotated Domains: ____________________________________________
__________________________________________________
Database sequence: | | | | | 182
0 50 100 150
__________________
Annotated Domains:
PFAM RuBisCO_small: Ribulose bisphosphate car 60..179
PRINTS RUBISCOSMALL1: RUBISCO small subunit mot 21..38
PRINTS RUBISCOSMALL2: RUBISCO small subunit mot 48..66
PRINTS RUBISCOSMALL3: RUBISCO small subunit mot 69..95
PRINTS RUBISCOSMALL4: RUBISCO small subunit mot 97..112
PRINTS RUBISCOSMALL5: RUBISCO small subunit mot 119..148
PRINTS RUBISCOSMALL6: RUBISCO small subunit mot 153..179
PRODOM PD000564: RBS(27) RBS2(12) RBS1(12) 23..58
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 60..178
__________________
Plus Strand HSPs:
Score = 199 (70.1 bits), Expect = 6.1e-15, P = 6.1e-15
Identities = 35/76 (46%), Positives = 48/76 (63%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPLP*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSD 488
P L +++DY+L+K + P + G + GYYDGR WT+WKLPMF C+D
Sbjct: 79 PLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCND 138
Query: 489 SSQVLKEIHECRRVYP 536
SSQVLKE+ EC++ YP
Sbjct: 139 SSQVLKELEECKKAYP 154
Score = 151 (53.2 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 45/107 (42%), Positives = 59/107 (55%), Frame = +2
Query: 110 MSAATFAAHIAGAGFVGLKSNSSNLCPSTGSIGWK-RKIVSNGSKTYCMKTWNPINNKKF 286
+S A+ A A F LKS S+ P T I SNG + CM+ W P+ KKF
Sbjct: 14 VSRASPAQSSMVAPFTCLKSTSA--FPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKF 71
Query: 287 ETLSYLPPLSDESIAKE-D*LHAQERDGSLALKFD-ELGCVRXENSHMPG 430
ETLSYLPPLS E +AKE D + ++ L+F+ E G V E++ PG
Sbjct: 72 ETLSYLPPLSSEQLAKEVD--YLLRKNLIPCLEFELEHGFVYREHNRSPG 119
>gi|1204056|emb|CAA63441.1| (X92858) Rubisco [Betula pendula]
Length = 110
Frame 3 hits (HSPs): ___________________________________
Frame 2 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | | | 110
0 20 40 60 80 100
Plus Strand HSPs:
Score = 199 (70.1 bits), Expect = 6.1e-15, P = 6.1e-15
Identities = 35/76 (46%), Positives = 48/76 (63%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPLP*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSD 488
P L +++DY+L+K + P + G + GYYDGR WT+WKLPMF C+D
Sbjct: 23 PLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCND 82
Query: 489 SSQVLKEIHECRRVYP 536
SSQVLKE+ EC++ YP
Sbjct: 83 SSQVLKELEECKKAYP 98
Score = 127 (44.7 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 30/61 (49%), Positives = 40/61 (65%), Frame = +2
Query: 248 CMKTWNPINNKKFETLSYLPPLSDESIAKE-D*LHAQERDGSLALKFD-ELGCVRXENSH 421
CM+ W P+ KKFETLSYLPPLS E +AKE D + ++ L+F+ E G V E++
Sbjct: 3 CMQVWPPLGLKKFETLSYLPPLSSEQLAKEVD--YLLRKNLIPCLEFELEHGFVYREHNR 60
Query: 422 MPG 430
PG
Sbjct: 61 SPG 63
>gi|132145|sp|P08705|RBS_HELAN RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|68087|pir||RKFSS
ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
precursor - common sunflower >gi|18808|emb|CAA68490.1| (Y00431)
ribulose bisphosphate carboxylase [Helianthus annuus]
>gi|755735|emb|CAA28737.1| (X05079) RuBisCO (SSU) [Helianthus
annuus]
Length = 178
Frame 3 hits (HSPs): _______________________
Frame 2 hits (HSPs): ___________________________
Annotated Domains: _____________________________________________
__________________________________________________
Database sequence: | | | | | 178
0 50 100 150
__________________
Annotated Domains:
DOMO DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 56..175
PFAM RuBisCO_small: Ribulose bisphosphate car 56..175
PRINTS RUBISCOSMALL1: RUBISCO small subunit mot 18..35
PRINTS RUBISCOSMALL2: RUBISCO small subunit mot 44..62
PRINTS RUBISCOSMALL3: RUBISCO small subunit mot 65..91
PRINTS RUBISCOSMALL4: RUBISCO small subunit mot 93..108
PRINTS RUBISCOSMALL5: RUBISCO small subunit mot 115..144
PRINTS RUBISCOSMALL6: RUBISCO small subunit mot 149..175
PRODOM PD000564: RBS(27) RBS2(12) RBS1(12) 20..54
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 56..174
__________________
Plus Strand HSPs:
Score = 192 (67.6 bits), Expect = 3.4e-14, P = 3.4e-14
Identities = 34/77 (44%), Positives = 49/77 (63%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPLP*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSD 488
P L +++DY+L+K P + G + A GYYDGR WT+WKLPMF C+D
Sbjct: 75 PLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTD 134
Query: 489 SSQVLKEIHECRRVYPK 539
S+QV+KE+ EC++ YP+
Sbjct: 135 SAQVMKELAECKKEYPQ 151
Score = 166 (58.4 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 41/95 (43%), Positives = 56/95 (58%), Frame = +2
Query: 146 AGFVGLKSNSSNLCPSTGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDES 325
A F GLKSN++ P+T + SNG + CMK W P+ KK+ETLSYLPPL++
Sbjct: 23 APFTGLKSNAA--FPTTKKANDFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQ 80
Query: 326 IAKE-D*LHAQERDGSLALKFD-ELGCVRXENSHMPG 430
+AKE D + + L+F+ E G V EN+ PG
Sbjct: 81 LAKEVD--YLLRKKWVPCLEFELEHGFVYRENARSPG 115
>gi|3914600|sp|O64416|RBS_MARPA RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|3168587|dbj|BAA28610.1|
(AB004883) ribulose 1,5-bisphosphate carboxylase/oxygenase small
subunit [Marchantia paleacea]
Length = 180
Frame 3 hits (HSPs): ______________________
Frame 2 hits (HSPs): ______________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 180
0 50 100 150
__________________
Annotated Domains:
PFAM RuBisCO_small: Ribulose bisphosphate car 59..178
PRODOM PD055882: RBS_MARPA 1..57
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 59..177
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 36..43
__________________
Plus Strand HSPs:
Score = 191 (67.2 bits), Expect = 4.3e-14, P = 4.3e-14
Identities = 35/78 (44%), Positives = 49/78 (62%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPLP*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSD 488
P + L ++IDY++K G P G + + GYYDGR WT+WKLPMF C+D
Sbjct: 78 PLSQDALAKQIDYVIKSGWAPCI-EFDVQGTVTREGSTMPGYYDGRYWTMWKLPMFGCTD 136
Query: 489 SSQVLKEIHECRRVY-PKC 542
S+ VL+EI EC+++Y KC
Sbjct: 137 SASVLREIEECKKLYGKKC 155
Score = 175 (61.6 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 36/78 (46%), Positives = 49/78 (62%), Frame = +2
Query: 197 GSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKED*LHAQERDG-SL 373
G W+ K +NGS+ CM+ W P NN KFETLSYLPPLS +++AK+ + + G +
Sbjct: 41 GKSEWQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQ--IDYVIKSGWAP 98
Query: 374 ALKFDELGCVRXENSHMPG 430
++FD G V E S MPG
Sbjct: 99 CIEFDVQGTVTREGSTMPG 117
>gi|464595|sp|Q02980|RBS_MALSP RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|478399|pir||JQ2241
ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
precursor - apple tree >gi|19581|emb|CAA46475.1| (X65494) ribulose
bisphosphate carboxylase [Malus sp.]
Length = 183
Frame 3 hits (HSPs): ______________________
Frame 2 hits (HSPs): __________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | 183
0 50 100 150
__________________
Annotated Domains:
DOMO DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 61..180
PFAM RuBisCO_small: Ribulose bisphosphate car 61..180
PRINTS RUBISCOSMALL1: RUBISCO small subunit mot 23..40
PRINTS RUBISCOSMALL2: RUBISCO small subunit mot 49..67
PRINTS RUBISCOSMALL3: RUBISCO small subunit mot 70..96
PRINTS RUBISCOSMALL4: RUBISCO small subunit mot 98..113
PRINTS RUBISCOSMALL5: RUBISCO small subunit mot 120..149
PRINTS RUBISCOSMALL6: RUBISCO small subunit mot 154..180
PRODOM PD027467: RBS(2) 1..24
PRODOM PD000564: RBS(27) RBS2(12) RBS1(12) 26..59
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 61..179
__________________
Plus Strand HSPs:
Score = 190 (66.9 bits), Expect = 5.5e-14, P = 5.5e-14
Identities = 34/77 (44%), Positives = 47/77 (61%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPLP*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSD 488
P L +++DY+L+K P + G + GYYDGR WT+WKLPMF C+D
Sbjct: 80 PLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTD 139
Query: 489 SSQVLKEIHECRRVYPK 539
SSQVLKE+ E ++ YP+
Sbjct: 140 SSQVLKELEEAKKAYPQ 156
Score = 177 (62.3 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 45/95 (47%), Positives = 57/95 (60%), Frame = +2
Query: 146 AGFVGLKSNSSNLCPSTGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDES 325
A F GLKS+S++ P T I SNG + CM+ W P+ KKFETLSYLPPLS ES
Sbjct: 28 APFTGLKSSSAS--PVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTES 85
Query: 326 IAKE-D*LHAQERDGSLALKFD-ELGCVRXENSHMPG 430
+AKE D + ++ L+F+ E G V EN PG
Sbjct: 86 LAKEVD--YLLRKNWVPCLEFELEHGFVYRENHRSPG 120
>gi|403160|gb|AAA33866.1| (L24497) ribulose 1,5-bisphosphate carboxylase small
subunit [Malus domestica X Pyrus communis]
Length = 179
Frame 3 hits (HSPs): _______________________
Frame 2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | | 179
0 50 100 150
Plus Strand HSPs:
Score = 190 (66.9 bits), Expect = 5.5e-14, P = 5.5e-14
Identities = 34/77 (44%), Positives = 47/77 (61%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPLP*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSD 488
P L +++DY+L+K P + G + GYYDGR WT+WKLPMF C+D
Sbjct: 76 PLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENNRSPGYYDGRYWTMWKLPMFGCTD 135
Query: 489 SSQVLKEIHECRRVYPK 539
SSQVLKE+ E ++ YP+
Sbjct: 136 SSQVLKELEEAKKAYPQ 152
Score = 176 (62.0 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 45/95 (47%), Positives = 57/95 (60%), Frame = +2
Query: 146 AGFVGLKSNSSNLCPSTGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDES 325
A F GLKS+S+ P T I SNG + CM+ W P+ KKFETLSYLPPLS ES
Sbjct: 24 APFTGLKSSSA--FPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTES 81
Query: 326 IAKE-D*LHAQERDGSLALKFD-ELGCVRXENSHMPG 430
+AKE D + ++ L+F+ E G V EN+ PG
Sbjct: 82 LAKEVD--YLLRKNWVPCLEFELEHGFVYRENNRSPG 116
>gi|132153|sp|P24007|RBS_PYRPY RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|218021|dbj|BAA00450.1|
(D00572) RuBisCO small subunit [Pyrus pyrifolia]
Length = 183
Frame 3 hits (HSPs): ______________________
Frame 2 hits (HSPs): __________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | 183
0 50 100 150
__________________
Annotated Domains:
DOMO DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 61..180
PFAM RuBisCO_small: Ribulose bisphosphate car 61..180
PRINTS RUBISCOSMALL1: RUBISCO small subunit mot 23..40
PRINTS RUBISCOSMALL2: RUBISCO small subunit mot 49..67
PRINTS RUBISCOSMALL3: RUBISCO small subunit mot 70..96
PRINTS RUBISCOSMALL4: RUBISCO small subunit mot 98..113
PRINTS RUBISCOSMALL5: RUBISCO small subunit mot 120..149
PRINTS RUBISCOSMALL6: RUBISCO small subunit mot 154..180
PRODOM PD027467: RBS(2) 1..24
PRODOM PD000564: RBS(27) RBS2(12) RBS1(12) 26..59
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 61..179
__________________
Plus Strand HSPs:
Score = 190 (66.9 bits), Expect = 5.5e-14, P = 5.5e-14
Identities = 34/77 (44%), Positives = 47/77 (61%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPLP*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSD 488
P L +++DY+L+K P + G + GYYDGR WT+WKLPMF C+D
Sbjct: 80 PLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTD 139
Query: 489 SSQVLKEIHECRRVYPK 539
SSQVLKE+ E ++ YP+
Sbjct: 140 SSQVLKELEEAKKAYPQ 156
Score = 174 (61.3 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 45/95 (47%), Positives = 56/95 (58%), Frame = +2
Query: 146 AGFVGLKSNSSNLCPSTGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDES 325
A F GLKS+S+ P T I SNG + CM+ W P+ KKFETLSYLPPLS ES
Sbjct: 28 APFNGLKSSSA--FPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSES 85
Query: 326 IAKE-D*LHAQERDGSLALKFD-ELGCVRXENSHMPG 430
+AKE D + ++ L+F+ E G V EN PG
Sbjct: 86 LAKEVD--YLLRKNWVPCLEFELETGFVYRENHRSPG 120
>gi|132144|sp|P07089|RBS_FLATR RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|68066|pir||RKFPST
ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
precursor - Flaveria trinervia >gi|18466|emb|CAA28711.1| (X05037)
ribulose 1.5-bisphosphate carboxylase (AA 1-173) [Flaveria
trinervia]
Length = 173
Frame 3 hits (HSPs): _____________________
Frame 2 hits (HSPs): ____________________________
Annotated Domains: ______________________________________________
__________________________________________________
Database sequence: | | | | | 173
0 50 100 150
__________________
Annotated Domains:
DOMO DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 51..170
PFAM RuBisCO_small: Ribulose bisphosphate car 51..170
PRINTS RUBISCOSMALL1: RUBISCO small subunit mot 13..30
PRINTS RUBISCOSMALL2: RUBISCO small subunit mot 39..57
PRINTS RUBISCOSMALL3: RUBISCO small subunit mot 60..86
PRINTS RUBISCOSMALL4: RUBISCO small subunit mot 88..103
PRINTS RUBISCOSMALL5: RUBISCO small subunit mot 110..139
PRINTS RUBISCOSMALL6: RUBISCO small subunit mot 144..170
PRODOM PD000564: RBS(27) RBS2(12) RBS1(12) 15..49
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 51..169
__________________
Plus Strand HSPs:
Score = 187 (65.8 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 32/71 (45%), Positives = 47/71 (66%), Frame = +3
Query: 327 LQRKIDYMLKKGMDPLP*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSDSSQVLK 506
L +++DY+L+ P + G + A GYYDGR WT+WKLPMF C+DS+QV+K
Sbjct: 76 LAKEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYYDGRYWTMWKLPMFGCTDSAQVMK 135
Query: 507 EIHECRRVYPK 539
E+ EC++ YP+
Sbjct: 136 ELQECKKEYPQ 146
Score = 159 (56.0 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 39/95 (41%), Positives = 54/95 (56%), Frame = +2
Query: 146 AGFVGLKSNSSNLCPSTGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDES 325
A F GLK+N++ P T + + SNG + CMK W P+ KK+ETLSYLP L++
Sbjct: 18 APFTGLKANAA--FPVTKKVNGFSTLPSNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQ 75
Query: 326 IAKE-D*LHAQERDGSLALKFD-ELGCVRXENSHMPG 430
+AKE D + L+F+ E G V EN+ PG
Sbjct: 76 LAKEVD--YLLRNKWVPCLEFELEHGFVYRENASSPG 110
>gi|3914580|sp|Q39745|RBS3_FLAPR RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
3 PRECURSOR (RUBISCO SMALL SUBUNIT 3) >gi|967223|gb|AAB67847.1|
(U29935) ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit protein [Flaveria pringlei]
Length = 173
Frame 3 hits (HSPs): _____________________
Frame 2 hits (HSPs): _______________________________
Annotated Domains: ______________________________________________
__________________________________________________
Database sequence: | | | | | 173
0 50 100 150
__________________
Annotated Domains:
PFAM RuBisCO_small: Ribulose bisphosphate car 51..170
PRINTS RUBISCOSMALL1: RUBISCO small subunit mot 13..30
PRINTS RUBISCOSMALL2: RUBISCO small subunit mot 39..57
PRINTS RUBISCOSMALL3: RUBISCO small subunit mot 60..86
PRINTS RUBISCOSMALL4: RUBISCO small subunit mot 88..103
PRINTS RUBISCOSMALL5: RUBISCO small subunit mot 110..139
PRINTS RUBISCOSMALL6: RUBISCO small subunit mot 144..170
PRODOM PD000564: RBS(27) RBS2(12) RBS1(12) 15..49
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 51..169
__________________
Plus Strand HSPs:
Score = 186 (65.5 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 32/71 (45%), Positives = 47/71 (66%), Frame = +3
Query: 327 LQRKIDYMLKKGMDPLP*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSDSSQVLK 506
L +++DY+L+ P + G + A GYYDGR WT+WKLPMF C+DS+QV+K
Sbjct: 76 LAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMK 135
Query: 507 EIHECRRVYPK 539
E+ EC++ YP+
Sbjct: 136 ELQECKKEYPQ 146
Score = 160 (56.3 bits), Expect = 8.3e-11, P = 8.3e-11
Identities = 42/106 (39%), Positives = 58/106 (54%), Frame = +2
Query: 113 SAATFAAHIAGAGFVGLKSNSSNLCPSTGSIGWKRKIVSNGSKTYCMKTWNPINNKKFET 292
+ AT A A F GLKSN++ P T + + SNG + CMK W P+ K++ET
Sbjct: 7 TVATVAQANMVAPFTGLKSNAA--FPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKRYET 64
Query: 293 LSYLPPLSDESIAKE-D*LHAQERDGSLALKFD-ELGCVRXENSHMPG 430
LSYLP L++ +AKE D + L+F+ E G V EN+ PG
Sbjct: 65 LSYLPNLTESQLAKEVD--YLLRNKWVPCLEFELEHGFVYRENARSPG 110
>gi|3914597|sp|Q39749|RBS7_FLAPR RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
7 PRECURSOR (RUBISCO SMALL SUBUNIT 7) >gi|967231|gb|AAB67851.1|
(U29939) ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit protein [Flaveria pringlei]
Length = 173
Frame 3 hits (HSPs): _____________________
Frame 2 hits (HSPs): _______________________________
Annotated Domains: ______________________________________________
__________________________________________________
Database sequence: | | | | | 173
0 50 100 150
__________________
Annotated Domains:
PFAM RuBisCO_small: Ribulose bisphosphate car 51..170
PRINTS RUBISCOSMALL1: RUBISCO small subunit mot 13..30
PRINTS RUBISCOSMALL2: RUBISCO small subunit mot 39..57
PRINTS RUBISCOSMALL3: RUBISCO small subunit mot 60..86
PRINTS RUBISCOSMALL4: RUBISCO small subunit mot 88..103
PRINTS RUBISCOSMALL5: RUBISCO small subunit mot 110..139
PRINTS RUBISCOSMALL6: RUBISCO small subunit mot 144..170
PRODOM PD000564: RBS(27) RBS2(12) RBS1(12) 15..49
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 51..169
__________________
Plus Strand HSPs:
Score = 186 (65.5 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 32/71 (45%), Positives = 47/71 (66%), Frame = +3
Query: 327 LQRKIDYMLKKGMDPLP*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSDSSQVLK 506
L +++DY+L+ P + G + A GYYDGR WT+WKLPMF C+DS+QV+K
Sbjct: 76 LAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMK 135
Query: 507 EIHECRRVYPK 539
E+ EC++ YP+
Sbjct: 136 ELQECKKEYPQ 146
Score = 160 (56.3 bits), Expect = 8.3e-11, P = 8.3e-11
Identities = 42/106 (39%), Positives = 58/106 (54%), Frame = +2
Query: 113 SAATFAAHIAGAGFVGLKSNSSNLCPSTGSIGWKRKIVSNGSKTYCMKTWNPINNKKFET 292
+ AT A A F GLKSN++ P T + + SNG + CMK W P+ K++ET
Sbjct: 7 TVATVAQANMVAPFTGLKSNAA--FPVTKKVNDFSTLASNGGRVQCMKVWPPLGKKRYET 64
Query: 293 LSYLPPLSDESIAKE-D*LHAQERDGSLALKFD-ELGCVRXENSHMPG 430
LSYLP L++ +AKE D + L+F+ E G V EN+ PG
Sbjct: 65 LSYLPNLTEVQLAKEVD--YLLRNKWVPCLEFELEHGFVYRENARSPG 110
>gi|3914576|sp|Q39743|RBS1_FLAPR RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
1 PRECURSOR (RUBISCO SMALL SUBUNIT 1) >gi|967219|gb|AAB67845.1|
(U29933) ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit protein [Flaveria pringlei]
Length = 173
Frame 3 hits (HSPs): _____________________
Frame 2 hits (HSPs): _______________________________
Annotated Domains: ______________________________________________
__________________________________________________
Database sequence: | | | | | 173
0 50 100 150
__________________
Annotated Domains:
PFAM RuBisCO_small: Ribulose bisphosphate car 51..170
PRINTS RUBISCOSMALL1: RUBISCO small subunit mot 13..30
PRINTS RUBISCOSMALL2: RUBISCO small subunit mot 39..57
PRINTS RUBISCOSMALL3: RUBISCO small subunit mot 60..86
PRINTS RUBISCOSMALL4: RUBISCO small subunit mot 88..103
PRINTS RUBISCOSMALL5: RUBISCO small subunit mot 110..139
PRINTS RUBISCOSMALL6: RUBISCO small subunit mot 144..170
PRODOM PD000564: RBS(27) RBS2(12) RBS1(12) 15..49
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 51..169
__________________
Plus Strand HSPs:
Score = 186 (65.5 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 32/71 (45%), Positives = 47/71 (66%), Frame = +3
Query: 327 LQRKIDYMLKKGMDPLP*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSDSSQVLK 506
L +++DY+L+ P + G + A GYYDGR WT+WKLPMF C+DS+QV+K
Sbjct: 76 LAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMK 135
Query: 507 EIHECRRVYPK 539
E+ EC++ YP+
Sbjct: 136 ELQECKKEYPQ 146
Score = 159 (56.0 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 42/106 (39%), Positives = 58/106 (54%), Frame = +2
Query: 113 SAATFAAHIAGAGFVGLKSNSSNLCPSTGSIGWKRKIVSNGSKTYCMKTWNPINNKKFET 292
+ AT A A F GLK+N++ P T + + SNG + CMK W P+ KK+ET
Sbjct: 7 TVATVAQANMVAPFTGLKANAA--FPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKKYET 64
Query: 293 LSYLPPLSDESIAKE-D*LHAQERDGSLALKFD-ELGCVRXENSHMPG 430
LSYLP L++ +AKE D + L+F+ E G V EN+ PG
Sbjct: 65 LSYLPDLTEVQLAKEVD--YLLRNKWVPCLEFELEHGFVYRENARSPG 110
>gi|3914581|sp|Q39746|RBS4_FLAPR RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
4 PRECURSOR (RUBISCO SMALL SUBUNIT 4) >gi|967225|gb|AAB67848.1|
(U29936) ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit protein [Flaveria pringlei]
Length = 178
Frame 3 hits (HSPs): _____________________
Frame 2 hits (HSPs): ______________________________
Annotated Domains: _____________________________________________
__________________________________________________
Database sequence: | | | | | 178
0 50 100 150
__________________
Annotated Domains:
PFAM RuBisCO_small: Ribulose bisphosphate car 56..175
PRINTS RUBISCOSMALL1: RUBISCO small subunit mot 18..35
PRINTS RUBISCOSMALL2: RUBISCO small subunit mot 44..62
PRINTS RUBISCOSMALL3: RUBISCO small subunit mot 65..91
PRINTS RUBISCOSMALL4: RUBISCO small subunit mot 93..108
PRINTS RUBISCOSMALL5: RUBISCO small subunit mot 115..144
PRINTS RUBISCOSMALL6: RUBISCO small subunit mot 149..175
PRODOM PD000564: RBS(27) RBS2(12) RBS1(12) 20..54
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 56..174
__________________
Plus Strand HSPs:
Score = 186 (65.5 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 32/71 (45%), Positives = 47/71 (66%), Frame = +3
Query: 327 LQRKIDYMLKKGMDPLP*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSDSSQVLK 506
L +++DY+L+ P + G + A GYYDGR WT+WKLPMF C+DS+QV+K
Sbjct: 81 LAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMK 140
Query: 507 EIHECRRVYPK 539
E+ EC++ YP+
Sbjct: 141 ELQECKKEYPQ 151
Score = 159 (56.0 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 43/105 (40%), Positives = 59/105 (56%), Frame = +2
Query: 116 AATFAAHIAGAGFVGLKSNSSNLCPSTGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETL 295
AA A++ A F GLKSN++ P+T + SNG + CMK W P+ KK+ETL
Sbjct: 14 AAPAQANMV-APFTGLKSNAA--FPATKKANDFSTLPSNGGRVQCMKVWPPLGKKKYETL 70
Query: 296 SYLPPLSDESIAKE-D*LHAQERDGSLALKFD-ELGCVRXENSHMPG 430
SYLP L++ +AKE D + L+F+ E G V EN+ PG
Sbjct: 71 SYLPNLTEAQLAKEVD--YLLRNKWVPCLEFELEHGFVYRENARSPG 115
>gi|3914582|sp|Q39747|RBS5_FLAPR RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
5 PRECURSOR (RUBISCO SMALL SUBUNIT 5) >gi|967227|gb|AAB67849.1|
(U29937) ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit protein [Flaveria pringlei]
Length = 173
Frame 3 hits (HSPs): _____________________
Frame 2 hits (HSPs): _______________________________
Annotated Domains: ______________________________________________
__________________________________________________
Database sequence: | | | | | 173
0 50 100 150
__________________
Annotated Domains:
PFAM RuBisCO_small: Ribulose bisphosphate car 51..170
PRINTS RUBISCOSMALL1: RUBISCO small subunit mot 13..30
PRINTS RUBISCOSMALL2: RUBISCO small subunit mot 39..57
PRINTS RUBISCOSMALL3: RUBISCO small subunit mot 60..86
PRINTS RUBISCOSMALL4: RUBISCO small subunit mot 88..103
PRINTS RUBISCOSMALL5: RUBISCO small subunit mot 110..139
PRINTS RUBISCOSMALL6: RUBISCO small subunit mot 144..170
PRODOM PD000564: RBS(27) RBS2(12) RBS1(12) 15..49
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 51..169
__________________
Plus Strand HSPs:
Score = 186 (65.5 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 32/71 (45%), Positives = 47/71 (66%), Frame = +3
Query: 327 LQRKIDYMLKKGMDPLP*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSDSSQVLK 506
L +++DY+L+ P + G + A GYYDGR WT+WKLPMF C+DS+QV+K
Sbjct: 76 LAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMK 135
Query: 507 EIHECRRVYPK 539
E+ EC++ YP+
Sbjct: 136 ELQECKKEYPQ 146
Score = 158 (55.6 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 42/106 (39%), Positives = 58/106 (54%), Frame = +2
Query: 113 SAATFAAHIAGAGFVGLKSNSSNLCPSTGSIGWKRKIVSNGSKTYCMKTWNPINNKKFET 292
+ AT A A F GLKSN++ P T + + SNG + CMK W P+ K++ET
Sbjct: 7 TVATVAQANMVAPFTGLKSNAA--FPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKRYET 64
Query: 293 LSYLPPLSDESIAKE-D*LHAQERDGSLALKFD-ELGCVRXENSHMPG 430
LSYLP L++ +AKE D + L+F+ E G V EN+ PG
Sbjct: 65 LSYLPNLTEVQLAKEVD--YLLRNKWVPCLEFELEHGFVYRENARSPG 110
>gi|3914577|sp|Q39744|RBS2_FLAPR RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
2 PRECURSOR (RUBISCO SMALL SUBUNIT 2) >gi|967221|gb|AAB67846.1|
(U29934) ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit protein [Flaveria pringlei]
Length = 178
Frame 3 hits (HSPs): _____________________
Frame 2 hits (HSPs): ______________________________
Annotated Domains: _____________________________________________
__________________________________________________
Database sequence: | | | | | 178
0 50 100 150
__________________
Annotated Domains:
PFAM RuBisCO_small: Ribulose bisphosphate car 56..175
PRINTS RUBISCOSMALL1: RUBISCO small subunit mot 18..35
PRINTS RUBISCOSMALL2: RUBISCO small subunit mot 44..62
PRINTS RUBISCOSMALL3: RUBISCO small subunit mot 65..91
PRINTS RUBISCOSMALL4: RUBISCO small subunit mot 93..108
PRINTS RUBISCOSMALL5: RUBISCO small subunit mot 115..144
PRINTS RUBISCOSMALL6: RUBISCO small subunit mot 149..175
PRODOM PD000564: RBS(27) RBS2(12) RBS1(12) 20..54
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 56..174
__________________
Plus Strand HSPs:
Score = 186 (65.5 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 32/71 (45%), Positives = 47/71 (66%), Frame = +3
Query: 327 LQRKIDYMLKKGMDPLP*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSDSSQVLK 506
L +++DY+L+ P + G + A GYYDGR WT+WKLPMF C+DS+QV+K
Sbjct: 81 LAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMK 140
Query: 507 EIHECRRVYPK 539
E+ EC++ YP+
Sbjct: 141 ELQECKKEYPQ 151
Score = 153 (53.9 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 42/105 (40%), Positives = 58/105 (55%), Frame = +2
Query: 116 AATFAAHIAGAGFVGLKSNSSNLCPSTGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETL 295
AA A++ A F GLKSN + P+T + SNG + CMK W P+ K++ETL
Sbjct: 14 AAPAQANMV-APFTGLKSNVA--FPATKKANDFSTLPSNGGRVQCMKVWPPLGKKRYETL 70
Query: 296 SYLPPLSDESIAKE-D*LHAQERDGSLALKFD-ELGCVRXENSHMPG 430
SYLP L++ +AKE D + L+F+ E G V EN+ PG
Sbjct: 71 SYLPNLTEAQLAKEVD--YLLRNKWVPCLEFELEHGFVYRENARSPG 115
>gi|3914599|sp|O48550|RBS_ZANAE RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|2665670|gb|AAC18406.1|
(AF034479) ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Zantedeschia aethiopica]
Length = 178
Frame 3 hits (HSPs): _____________________
Frame 2 hits (HSPs): __________________________
Annotated Domains: ____________________________________________
__________________________________________________
Database sequence: | | | | | 178
0 50 100 150
__________________
Annotated Domains:
PFAM RuBisCO_small: Ribulose bisphosphate car 57..175
PRINTS RUBISCOSMALL1: RUBISCO small subunit mot 19..36
PRINTS RUBISCOSMALL2: RUBISCO small subunit mot 45..63
PRINTS RUBISCOSMALL3: RUBISCO small subunit mot 66..92
PRINTS RUBISCOSMALL4: RUBISCO small subunit mot 94..109
PRINTS RUBISCOSMALL5: RUBISCO small subunit mot 115..144
PRINTS RUBISCOSMALL6: RUBISCO small subunit mot 149..175
PRODOM PD000564: RBS(27) RBS2(12) RBS1(12) 21..55
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 57..174
__________________
Plus Strand HSPs:
Score = 186 (65.5 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 34/76 (44%), Positives = 45/76 (59%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPLP*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSD 488
P L +++DY+++ G P G + GYYDGR WT+WKLPMF C+D
Sbjct: 76 PLTREQLGQEVDYLIRNGWIPCI-EFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTD 134
Query: 489 SSQVLKEIHECRRVYP 536
SSQVLKE+ EC + YP
Sbjct: 135 SSQVLKEVDECSKAYP 150
Score = 146 (51.4 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 36/93 (38%), Positives = 53/93 (56%), Frame = +2
Query: 152 FVGLKSNSSNLCPSTGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIA 331
F GL S+++ P T K+ SNG + CM+ W P KKFETLSYLPPL+ E +
Sbjct: 26 FAGLHSSAA--FPVTRKFADSSKLPSNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLG 83
Query: 332 KED*LHAQERDGSL-ALKFDELGCVRXENSHMPG 430
+E + R+G + ++F ++G V E + PG
Sbjct: 84 QE--VDYLIRNGWIPCIEFCKVGFVYREYHNSPG 115
>gi|228864|prf||1813208A RuBisCO:SUBUNIT=small [Euglena gracilis]
Length = 278
Frame 3 hits (HSPs): ________________
Frame 2 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | 278
0 50 100 150 200 250
Plus Strand HSPs:
Score = 186 (65.5 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 36/84 (42%), Positives = 51/84 (60%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPL-----P*N-LMSWGVFVXKTAICQGYYDGRXWTLWKLP 470
P + +++D ++ KG+ P P N ++ V + GYYD R WT+WKLP
Sbjct: 154 PLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLP 213
Query: 471 MFACSDSSQVLKEIHECRRVYPKC 542
MF C+D+SQVL+EI ECRR YP+C
Sbjct: 214 MFGCTDASQVLREISECRRAYPQC 237
Score = 132 (46.5 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 23/29 (79%), Positives = 25/29 (86%), Frame = +2
Query: 251 MKTWNPINNKKFETLSYLPPLSDESIAKE 337
MK WNP+NNKKFET SYLPPLSD IAK+
Sbjct: 135 MKVWNPVNNKKFETFSYLPPLSDAQIAKQ 163
>gi|5777796|emb|CAA47180.2| (X66617) ribulose 1-5 bisphosphate
carboxylase/oxygenase [Euglena gracilis]
Length = 271
Frame 3 hits (HSPs): ________________
Frame 2 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | 271
0 50 100 150 200 250
Plus Strand HSPs:
Score = 186 (65.5 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 36/84 (42%), Positives = 51/84 (60%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPL-----P*N-LMSWGVFVXKTAICQGYYDGRXWTLWKLP 470
P + +++D ++ KG+ P P N ++ V + GYYD R WT+WKLP
Sbjct: 154 PLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLP 213
Query: 471 MFACSDSSQVLKEIHECRRVYPKC 542
MF C+D+SQVL+EI ECRR YP+C
Sbjct: 214 MFGCTDASQVLREISECRRAYPQC 237
Score = 132 (46.5 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 23/29 (79%), Positives = 25/29 (86%), Frame = +2
Query: 251 MKTWNPINNKKFETLSYLPPLSDESIAKE 337
MK WNP+NNKKFET SYLPPLSD IAK+
Sbjct: 135 MKVWNPVNNKKFETFSYLPPLSDAQIAKQ 163
>gi|81885|pir||S20508 ribulose-bisphosphate carboxylase (EC 4.1.1.39) small
chain precursor - kidney bean >gi|21050|emb|CAA42618.1| (X60000)
ribulose bisphosphate carboxylase [Phaseolus vulgaris]
>gi|21053|emb|CAA40339.1| (X57022) small subunit of ribulose
1,5-bisphosphate carboxylase/oxygenase [Phaseolus vulgaris]
Length = 180
Frame 3 hits (HSPs): _____________________
Frame 2 hits (HSPs): ____________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | 180
0 50 100 150
__________________
Annotated Domains:
DOMO DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 58..177
Entrez domain: transit peptide (chloroplast) 1..57
__________________
Plus Strand HSPs:
Score = 185 (65.1 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 34/76 (44%), Positives = 47/76 (61%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPLP*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSD 488
P L +++DY+L+KG P + G + GYYDGR WT+WKLPMF C+D
Sbjct: 77 PLTKQQLAKEVDYLLRKGWVPCLEFELEHGFVYREHNKSPGYYDGRYWTMWKLPMFGCTD 136
Query: 489 SSQVLKEIHECRRVYP 536
SSQVLKE++E + +P
Sbjct: 137 SSQVLKELYEAQTAHP 152
Score = 140 (49.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 40/99 (40%), Positives = 55/99 (55%), Frame = +2
Query: 140 AGAG----FVGLKSNSSNLCPSTGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLP 307
AGAG F GLKS PS + +NG + C++ W + KKFETLSYLP
Sbjct: 19 AGAGMVAPFTGLKSLGG--FPSRKMNNDITSVANNGGRVQCIQVWPTVGKKKFETLSYLP 76
Query: 308 PLSDESIAKED*LHAQERDGSL-ALKFD-ELGCVRXENSHMPG 430
PL+ + +AKE + R G + L+F+ E G V E++ PG
Sbjct: 77 PLTKQQLAKE--VDYLLRKGWVPCLEFELEHGFVYREHNKSPG 117
>gi|81883|pir||S20509 ribulose-bisphosphate carboxylase (EC 4.1.1.39) small
chain - kidney bean (fragment) >gi|809069|emb|CAA42617.1| (X59999)
ribulose bisphosphate carboxylase [Phaseolus vulgaris]
Length = 135
Frame 3 hits (HSPs): _____________________________
Frame 2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | 135
0 50 100
Plus Strand HSPs:
Score = 185 (65.1 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 34/76 (44%), Positives = 47/76 (61%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPLP*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSD 488
P L +++DY+L+KG P + G + GYYDGR WT+WKLPMF C+D
Sbjct: 32 PLTKQQLAKEVDYLLRKGWVPCLEFELEHGFVYREHNKSPGYYDGRYWTMWKLPMFGCTD 91
Query: 489 SSQVLKEIHECRRVYP 536
SSQVLKE++E + +P
Sbjct: 92 SSQVLKELYEAQTAHP 107
Score = 130 (45.8 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 29/70 (41%), Positives = 44/70 (62%), Frame = +2
Query: 221 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKED*LHAQERDGSL-ALKFD-EL 394
+ +NG + C++ W + KKFETLSYLPPL+ + +AKE + R G + L+F+ E
Sbjct: 3 VANNGGRVQCIQVWPTVGKKKFETLSYLPPLTKQQLAKE--VDYLLRKGWVPCLEFELEH 60
Query: 395 GCVRXENSHMPG 430
G V E++ PG
Sbjct: 61 GFVYREHNKSPG 72
>gi|3914596|sp|Q39748|RBS6_FLAPR RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
6 PRECURSOR (RUBISCO SMALL SUBUNIT 6) >gi|967229|gb|AAB67850.1|
(U29938) ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit protein [Flaveria pringlei]
Length = 173
Frame 3 hits (HSPs): _____________________
Frame 2 hits (HSPs): ______________________________
Annotated Domains: ______________________________________________
__________________________________________________
Database sequence: | | | | | 173
0 50 100 150
__________________
Annotated Domains:
PFAM RuBisCO_small: Ribulose bisphosphate car 51..170
PRINTS RUBISCOSMALL1: RUBISCO small subunit mot 13..30
PRINTS RUBISCOSMALL2: RUBISCO small subunit mot 39..57
PRINTS RUBISCOSMALL3: RUBISCO small subunit mot 60..86
PRINTS RUBISCOSMALL4: RUBISCO small subunit mot 88..103
PRINTS RUBISCOSMALL5: RUBISCO small subunit mot 110..139
PRINTS RUBISCOSMALL6: RUBISCO small subunit mot 144..170
PRODOM PD000564: RBS(27) RBS2(12) RBS1(12) 15..49
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 51..169
__________________
Plus Strand HSPs:
Score = 183 (64.4 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 32/71 (45%), Positives = 46/71 (64%), Frame = +3
Query: 327 LQRKIDYMLKKGMDPLP*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSDSSQVLK 506
L +++DY+L+ P + G + A GYYDGR WT+WKLPMF C+DS QV+K
Sbjct: 76 LAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSVQVMK 135
Query: 507 EIHECRRVYPK 539
E+ EC++ YP+
Sbjct: 136 ELQECKKEYPQ 146
Score = 152 (53.5 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 41/105 (39%), Positives = 58/105 (55%), Frame = +2
Query: 116 AATFAAHIAGAGFVGLKSNSSNLCPSTGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETL 295
AA A++ A F GLK+N++ P T + + SNG + CMK W P+ KK+ TL
Sbjct: 9 AAVAQANMV-APFTGLKANAA--FPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKKYXTL 65
Query: 296 SYLPPLSDESIAKE-D*LHAQERDGSLALKFD-ELGCVRXENSHMPG 430
SYLP L++ +AKE D + L+F+ E G V EN+ PG
Sbjct: 66 SYLPNLTEAQLAKEVD--YLLRNKWVPCLEFELEHGFVYRENARSPG 110
>gi|5763513|dbj|BAA83481.1| (AB026685) ribulose 1,5-bisphosphate
carboxylase/oxygenase small subunit [Physcomitrella patens]
Length = 214
Frame 3 hits (HSPs): ____________________
Frame 2 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | 214
0 50 100 150 200
Plus Strand HSPs:
Score = 182 (64.1 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 36/80 (45%), Positives = 52/80 (65%), Frame = +3
Query: 309 PFQMNPLQRKIDYMLKKGMDPLP*NLMSWGVFVXKT----AICQGYYDGRXWTLWKLPMF 476
P + + +++DYM+++ + P + G V +T A GYYDGR WT+WKLPMF
Sbjct: 111 PLTDDQIAKQVDYMIQQNLIPCI-EFDTVGS-VSRTNFSGAGSSGYYDGRYWTMWKLPMF 168
Query: 477 ACSDSSQVLKEIHECRRVYPKC 542
C+DSSQVL+EI EC+ +P C
Sbjct: 169 GCTDSSQVLREIQECKSQFPSC 190
Score = 148 (52.1 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 31/68 (45%), Positives = 41/68 (60%), Frame = +2
Query: 212 KRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKED*LHAQERDGSLALKFDE 391
K V NGS+ CM+ WNPI KFET SYLPPL+D+ IAK+ Q+ + ++FD
Sbjct: 79 KLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQVDYMIQQ-NLIPCIEFDT 137
Query: 392 LGCVRXEN 415
+G V N
Sbjct: 138 VGSVSRTN 145
>gi|132154|sp|P08135|RBS_RAPSA RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|68059|pir||RKRVS
ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
precursor - radish >gi|755803|emb|CAA29801.1| (X06558) carboxylase
[Raphanus sativus] >gi|226003|prf||1405335A ribulose bisphosphate
carboxylase S [Raphanus sativus]
Length = 181
Frame 3 hits (HSPs): ____________________
Frame 2 hits (HSPs): ___________________________
Annotated Domains: _____________________________________________
__________________________________________________
Database sequence: | | | | | 181
0 50 100 150
__________________
Annotated Domains:
DOMO DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 56..175
PFAM RuBisCO_small: Ribulose bisphosphate car 56..175
PRINTS RUBISCOSMALL1: RUBISCO small subunit mot 17..34
PRINTS RUBISCOSMALL2: RUBISCO small subunit mot 44..62
PRINTS RUBISCOSMALL3: RUBISCO small subunit mot 65..91
PRINTS RUBISCOSMALL4: RUBISCO small subunit mot 93..108
PRINTS RUBISCOSMALL5: RUBISCO small subunit mot 115..144
PRINTS RUBISCOSMALL6: RUBISCO small subunit mot 149..175
PRODOM PD000564: RBS(27) RBS2(12) RBS1(12) 20..54
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 56..174
__________________
Plus Strand HSPs:
Score = 181 (63.7 bits), Expect = 4.9e-13, P = 4.9e-13
Identities = 31/70 (44%), Positives = 45/70 (64%), Frame = +3
Query: 327 LQRKIDYMLKKGMDPLP*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSDSSQVLK 506
L +++DY+L+ P + G + GYYDGR WT+WKLP+F C+DS+QVLK
Sbjct: 81 LAKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLK 140
Query: 507 EIHECRRVYP 536
E+ EC++ YP
Sbjct: 141 EVQECKKEYP 150
Score = 151 (53.2 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 42/95 (44%), Positives = 52/95 (54%), Frame = +2
Query: 146 AGFVGLKSNSSNLCPSTGSIGWK-RKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDE 322
A F GLKS+++ P T I SNG + CMK W PI KKFETLSYLP LSD
Sbjct: 22 APFTGLKSSAA--FPVTRKTNTDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDV 79
Query: 323 SIAKE-D*LHAQERDGSLALKFD-ELGCVRXENSHMPG 430
+AKE D + ++F+ E G V E+ PG
Sbjct: 80 ELAKEVD--YLLRNKWIPCVEFELEHGFVYREHGSTPG 115
>gi|132102|sp|P10797|RBS3_ARATH RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
2B PRECURSOR (RUBISCO SMALL SUBUNIT 2B) >gi|68061|pir||RKMUB2
ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain B2
precursor - Arabidopsis thaliana >gi|16194|emb|CAA32701.1| (X14564)
ribulose bisphosphate carboxylase [Arabidopsis thaliana]
Length = 181
Frame 3 hits (HSPs): ____________________
Frame 2 hits (HSPs): ___________________________
Annotated Domains: _____________________________________________
__________________________________________________
Database sequence: | | | | | 181
0 50 100 150
__________________
Annotated Domains:
DOMO DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 56..175
PFAM RuBisCO_small: Ribulose bisphosphate car 56..175
PRINTS RUBISCOSMALL1: RUBISCO small subunit mot 17..34
PRINTS RUBISCOSMALL2: RUBISCO small subunit mot 44..62
PRINTS RUBISCOSMALL3: RUBISCO small subunit mot 65..91
PRINTS RUBISCOSMALL4: RUBISCO small subunit mot 93..108
PRINTS RUBISCOSMALL5: RUBISCO small subunit mot 115..144
PRINTS RUBISCOSMALL6: RUBISCO small subunit mot 149..175
PRODOM PD000564: RBS(27) RBS2(12) RBS1(12) 20..54
PRODOM PD000290: RBS(65) RBS1(21) RBS2(17) 56..174
__________________
Plus Strand HSPs:
Score = 180 (63.4 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 31/70 (44%), Positives = 45/70 (64%), Frame = +3
Query: 327 LQRKIDYMLKKGMDPLP*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSDSSQVLK 506
L +++DY+L+ P + G + GYYDGR WT+WKLP+F C+DS+QVLK
Sbjct: 81 LAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLK 140
Query: 507 EIHECRRVYP 536
E+ EC++ YP
Sbjct: 141 EVEECKKEYP 150
Score = 154 (54.2 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 43/95 (45%), Positives = 53/95 (55%), Frame = +2
Query: 146 AGFVGLKSNSSNLCPSTGSIGWK-RKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDE 322
A F GLKS++S P T I SNG + CMK W PI KKFETLSYLP LSD
Sbjct: 22 APFTGLKSSAS--FPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLSDV 79
Query: 323 SIAKE-D*LHAQERDGSLALKFD-ELGCVRXENSHMPG 430
+AKE D + ++F+ E G V E+ + PG
Sbjct: 80 ELAKEVD--YLLRNKWIPCVEFELEHGFVYREHGNTPG 115
>gi|9758820|dbj|BAB09354.1| (AB005248) ribulose bisphosphate carboxylase small
chain 2b precursor (RuBisCO small subunit 2b) [Arabidopsis
thaliana]
Length = 181
Frame 3 hits (HSPs): ____________________
Frame 2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | | 181
0 50 100 150
Plus Strand HSPs:
Score = 180 (63.4 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 31/70 (44%), Positives = 45/70 (64%), Frame = +3
Query: 327 LQRKIDYMLKKGMDPLP*NLMSWGVFVXKTAICQGYYDGRXWTLWKLPMFACSDSSQVLK 506
L +++DY+L+ P + G + GYYDGR WT+WKLP+F C+DS+QVLK
Sbjct: 81 LAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLK 140
Query: 507 EIHECRRVYP 536
E+ EC++ YP
Sbjct: 141 EVEECKKEYP 150
Score = 154 (54.2 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 43/95 (45%), Positives = 53/95 (55%), Frame = +2
Query: 146 AGFVGLKSNSSNLCPSTGSIGWK-RKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDE 322
A F GLKS++S P T I SNG + CMK W PI KKFETLSYLP LSD
Sbjct: 22 APFTGLKSSAS--FPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLSDV 79
Query: 323 SIAKE-D*LHAQERDGSLALKFD-ELGCVRXENSHMPG 430
+AKE D + ++F+ E G V E+ + PG
Sbjct: 80 ELAKEVD--YLLRNKWIPCVEFELEHGFVYREHGNTPG 115
WARNING: HSPs involving 259 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.97
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.347 0.154 0.553
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.345 0.150 0.496
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.353 0.155 0.597
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.355 0.158 0.574
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.341 0.148 0.491
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.345 0.146 0.534
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 180 178 10. 76 3 12 22 0.11 34
31 0.11 37
+2 0 181 180 10. 76 3 12 22 0.11 34
31 0.12 37
+1 0 181 179 10. 76 3 12 22 0.11 34
31 0.12 37
-1 0 181 179 10. 76 3 12 22 0.11 34
31 0.12 37
-2 0 181 179 10. 76 3 12 22 0.11 34
31 0.12 37
-3 0 180 179 10. 76 3 12 22 0.11 34
31 0.12 37
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 309
No. of states in DFA: 594 (59 KB)
Total size of DFA: 223 KB (256 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 183.11u 0.99s 184.10t Elapsed: 00:01:06
Total cpu time: 183.18u 1.03s 184.21t Elapsed: 00:01:06
Start: Mon Oct 1 19:08:43 2001 End: Mon Oct 1 19:09:49 2001
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000