MERNA
A Database of Metal Ion Binding Sites in RNA
There are 104 records.
| pdb_id |
Metal -> |
abbreviation |
metal_name |
atom_no |
res_no |
RNA Ligand -> |
element_id |
distancemrna |
rnaligand |
atom_no |
res_no |
chain |
rnabase |
| 1YIT |
|
Cd |
Cadmium |
91331 |
8701 |
|
M10155 |
5.588 |
N |
84991 |
6 |
U |
CYS6 |
| 1YIT |
|
Cd |
Cadmium |
91331 |
8701 |
|
M10155 |
5.306 |
O |
84994 |
6 |
U |
CYS6 |
| 1YIT |
|
Cd |
Cadmium |
91331 |
8701 |
|
M10155 |
2.368 |
SG |
84996 |
6 |
U |
CYS6 |
| 1YIT |
|
Cd |
Cadmium |
91331 |
8701 |
|
M10155 |
5.191 |
N |
85005 |
8 |
U |
TYR8 |
| 1YIT |
|
Cd |
Cadmium |
91331 |
8701 |
|
M10155 |
5.989 |
O |
85008 |
8 |
U |
TYR8 |
| 1YIT |
|
Cd |
Cadmium |
91331 |
8701 |
|
M10155 |
3.763 |
N |
85017 |
9 |
U |
CYS9 |
| 1YIT |
|
Cd |
Cadmium |
91331 |
8701 |
|
M10155 |
5.993 |
O |
85020 |
9 |
U |
CYS9 |
| 1YIT |
|
Cd |
Cadmium |
91331 |
8701 |
|
M10155 |
2.501 |
SG |
85022 |
9 |
U |
CYS9 |
| 1YIT |
|
Cd |
Cadmium |
91331 |
8701 |
|
M10155 |
4.854 |
N |
85023 |
10 |
U |
GLY10 |
| 1YIT |
|
Cd |
Cadmium |
91331 |
8701 |
|
M10155 |
5.332 |
N |
85027 |
11 |
U |
THR11 |
| 1YIT |
|
Cd |
Cadmium |
91331 |
8701 |
|
M10155 |
5.823 |
O |
85030 |
11 |
U |
THR11 |
| 1YIT |
|
Cd |
Cadmium |
91331 |
8701 |
|
M10155 |
4.57 |
OG1 |
85032 |
11 |
U |
THR11 |
| 1YIT |
|
Cd |
Cadmium |
91331 |
8701 |
|
M10155 |
4.006 |
N |
85185 |
32 |
U |
CYS32 |
| 1YIT |
|
Cd |
Cadmium |
91331 |
8701 |
|
M10155 |
5.885 |
O |
85188 |
32 |
U |
CYS32 |
| 1YIT |
|
Cd |
Cadmium |
91331 |
8701 |
|
M10155 |
2.419 |
SG |
85190 |
32 |
U |
CYS32 |
| 1YIT |
|
Cd |
Cadmium |
91331 |
8701 |
|
M10155 |
4.57 |
N |
85191 |
33 |
U |
SER33 |
| 1YIT |
|
Cd |
Cadmium |
91331 |
8701 |
|
M10155 |
5.675 |
O |
85194 |
33 |
U |
SER33 |
| 1YIT |
|
Cd |
Cadmium |
91331 |
8701 |
|
M10155 |
4.454 |
OG |
85196 |
33 |
U |
SER33 |
| 1YIT |
|
Cd |
Cadmium |
91331 |
8701 |
|
M10155 |
5.31 |
N |
85212 |
36 |
U |
CYS36 |
| 1YIT |
|
Cd |
Cadmium |
91331 |
8701 |
|
M10155 |
2.322 |
SG |
85217 |
36 |
U |
CYS36 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
5.498 |
N |
89570 |
19 |
1 |
CYS19 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
5.208 |
O |
89573 |
19 |
1 |
CYS19 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
2.557 |
SG |
89575 |
19 |
1 |
CYS19 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
5.828 |
N |
89576 |
20 |
1 |
ARG20 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
5.054 |
N |
89587 |
21 |
1 |
ARG21 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
5.7 |
O |
89590 |
21 |
1 |
ARG21 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
5.866 |
NH1 |
89596 |
21 |
1 |
ARG21 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
3.614 |
N |
89598 |
22 |
1 |
CYS22 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
5.52 |
O |
89601 |
22 |
1 |
CYS22 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
2.431 |
SG |
89603 |
22 |
1 |
CYS22 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
4.851 |
N |
89604 |
23 |
1 |
GLY23 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
5.105 |
N |
89608 |
24 |
1 |
GLU24 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
5.109 |
O |
89611 |
24 |
1 |
GLU24 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
5.873 |
O |
89629 |
26 |
1 |
SER26 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
5.837 |
N |
89632 |
27 |
1 |
TYR27 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
5.578 |
N |
89695 |
34 |
1 |
CYS34 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
5.466 |
O |
89698 |
34 |
1 |
CYS34 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
2.392 |
SG |
89700 |
34 |
1 |
CYS34 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
5.811 |
N |
89701 |
35 |
1 |
SER35 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
5.164 |
N |
89707 |
36 |
1 |
SER36 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
5.909 |
O |
89710 |
36 |
1 |
SER36 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
5.237 |
OG |
89712 |
36 |
1 |
SER36 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
3.742 |
N |
89713 |
37 |
1 |
CYS37 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
5.522 |
O |
89716 |
37 |
1 |
CYS37 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
2.393 |
SG |
89718 |
37 |
1 |
CYS37 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
4.87 |
N |
89719 |
38 |
1 |
GLY38 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
4.786 |
N |
89723 |
39 |
1 |
PHE39 |
| 1YIT |
|
Cd |
Cadmium |
91332 |
8702 |
|
M10156 |
5.944 |
NH1 |
89776 |
45 |
1 |
ARG45 |
| 1YIT |
|
Cd |
Cadmium |
91333 |
8703 |
|
M10157 |
5.927 |
N1 |
33482 |
1604 |
N/A |
G1604 |
| 1YIT |
|
Cd |
Cadmium |
91333 |
8703 |
|
M10157 |
5.921 |
N2 |
33484 |
1604 |
N/A |
G1604 |
| 1YIT |
|
Cd |
Cadmium |
91333 |
8703 |
|
M10157 |
5.676 |
N |
89102 |
39 |
Z |
CYS39 |
| 1YIT |
|
Cd |
Cadmium |
91333 |
8703 |
|
M10157 |
5.301 |
O |
89105 |
39 |
Z |
CYS39 |
| 1YIT |
|
Cd |
Cadmium |
91333 |
8703 |
|
M10157 |
2.457 |
SG |
89107 |
39 |
Z |
CYS39 |
| 1YIT |
|
Cd |
Cadmium |
91333 |
8703 |
|
M10157 |
5.65 |
N |
89108 |
40 |
Z |
PRO40 |
| 1YIT |
|
Cd |
Cadmium |
91333 |
8703 |
|
M10157 |
4.778 |
N |
89115 |
41 |
Z |
ASN41 |
| 1YIT |
|
Cd |
Cadmium |
91333 |
8703 |
|
M10157 |
5.944 |
O |
89118 |
41 |
Z |
ASN41 |
| 1YIT |
|
Cd |
Cadmium |
91333 |
8703 |
|
M10157 |
5.934 |
OD1 |
89121 |
41 |
Z |
ASN41 |
| 1YIT |
|
Cd |
Cadmium |
91333 |
8703 |
|
M10157 |
5.066 |
ND2 |
89122 |
41 |
Z |
ASN41 |
| 1YIT |
|
Cd |
Cadmium |
91333 |
8703 |
|
M10157 |
3.812 |
N |
89123 |
42 |
Z |
CYS42 |
| 1YIT |
|
Cd |
Cadmium |
91333 |
8703 |
|
M10157 |
5.441 |
O |
89126 |
42 |
Z |
CYS42 |
| 1YIT |
|
Cd |
Cadmium |
91333 |
8703 |
|
M10157 |
3.021 |
SG |
89128 |
42 |
Z |
CYS42 |
| 1YIT |
|
Cd |
Cadmium |
91333 |
8703 |
|
M10157 |
5.744 |
N |
89129 |
43 |
Z |
GLY43 |
| 1YIT |
|
Cd |
Cadmium |
91333 |
8703 |
|
M10157 |
5.604 |
N |
89133 |
44 |
Z |
GLU44 |
| 1YIT |
|
Cd |
Cadmium |
91333 |
8703 |
|
M10157 |
5.332 |
O |
89136 |
44 |
Z |
GLU44 |
| 1YIT |
|
Cd |
Cadmium |
91333 |
8703 |
|
M10157 |
5.767 |
N |
89242 |
57 |
Z |
CYS57 |
| 1YIT |
|
Cd |
Cadmium |
91333 |
8703 |
|
M10157 |
5.357 |
O |
89245 |
57 |
Z |
CYS57 |
| 1YIT |
|
Cd |
Cadmium |
91333 |
8703 |
|
M10157 |
2.5 |
SG |
89247 |
57 |
Z |
CYS57 |
| 1YIT |
|
Cd |
Cadmium |
91333 |
8703 |
|
M10157 |
5.205 |
N |
89254 |
59 |
Z |
TYR59 |
| 1YIT |
|
Cd |
Cadmium |
91333 |
8703 |
|
M10157 |
5.856 |
O |
89257 |
59 |
Z |
TYR59 |
| 1YIT |
|
Cd |
Cadmium |
91333 |
8703 |
|
M10157 |
3.649 |
N |
89266 |
60 |
Z |
CYS60 |
| 1YIT |
|
Cd |
Cadmium |
91333 |
8703 |
|
M10157 |
5.713 |
O |
89269 |
60 |
Z |
CYS60 |
| 1YIT |
|
Cd |
Cadmium |
91333 |
8703 |
|
M10157 |
2.392 |
SG |
89271 |
60 |
Z |
CYS60 |
| 1YIT |
|
Cd |
Cadmium |
91333 |
8703 |
|
M10157 |
4.946 |
N |
89272 |
61 |
Z |
ASP61 |
| 1YIT |
|
Cd |
Cadmium |
91333 |
8703 |
|
M10157 |
5.09 |
N |
89280 |
62 |
Z |
TYR62 |
| 1YIT |
|
Cd |
Cadmium |
91334 |
8704 |
|
M10158 |
5.953 |
N |
90365 |
11 |
3 |
CYS11 |
| 1YIT |
|
Cd |
Cadmium |
91334 |
8704 |
|
M10158 |
5.143 |
O |
90368 |
11 |
3 |
CYS11 |
| 1YIT |
|
Cd |
Cadmium |
91334 |
8704 |
|
M10158 |
2.404 |
SG |
90370 |
11 |
3 |
CYS11 |
| 1YIT |
|
Cd |
Cadmium |
91334 |
8704 |
|
M10158 |
5.238 |
N |
90378 |
13 |
3 |
HIS13 |
| 1YIT |
|
Cd |
Cadmium |
91334 |
8704 |
|
M10158 |
5.941 |
O |
90381 |
13 |
3 |
HIS13 |
| 1YIT |
|
Cd |
Cadmium |
91334 |
8704 |
|
M10158 |
3.948 |
N |
90388 |
14 |
3 |
CYS14 |
| 1YIT |
|
Cd |
Cadmium |
91334 |
8704 |
|
M10158 |
2.465 |
SG |
90393 |
14 |
3 |
CYS14 |
| 1YIT |
|
Cd |
Cadmium |
91334 |
8704 |
|
M10158 |
5.684 |
O |
90405 |
16 |
3 |
GLU16 |
| 1YIT |
|
Cd |
Cadmium |
91334 |
8704 |
|
M10158 |
5.022 |
OE1 |
90428 |
18 |
3 |
GLN18 |
| 1YIT |
|
Cd |
Cadmium |
91334 |
8704 |
|
M10158 |
5.229 |
NE2 |
90448 |
20 |
3 |
HIS20 |
| 1YIT |
|
Cd |
Cadmium |
91334 |
8704 |
|
M10158 |
5.647 |
N |
90851 |
71 |
3 |
CYS71 |
| 1YIT |
|
Cd |
Cadmium |
91334 |
8704 |
|
M10158 |
5.354 |
O |
90854 |
71 |
3 |
CYS71 |
| 1YIT |
|
Cd |
Cadmium |
91334 |
8704 |
|
M10158 |
2.442 |
SG |
90856 |
71 |
3 |
CYS71 |
| 1YIT |
|
Cd |
Cadmium |
91334 |
8704 |
|
M10158 |
5.902 |
N |
90857 |
72 |
3 |
GLY72 |
| 1YIT |
|
Cd |
Cadmium |
91334 |
8704 |
|
M10158 |
5.319 |
N |
90861 |
73 |
3 |
GLU73 |
| 1YIT |
|
Cd |
Cadmium |
91334 |
8704 |
|
M10158 |
4.044 |
N |
90870 |
74 |
3 |
CYS74 |
| 1YIT |
|
Cd |
Cadmium |
91334 |
8704 |
|
M10158 |
5.804 |
O |
90873 |
74 |
3 |
CYS74 |
| 1YIT |
|
Cd |
Cadmium |
91334 |
8704 |
|
M10158 |
2.523 |
SG |
90875 |
74 |
3 |
CYS74 |
| 1YIT |
|
Cd |
Cadmium |
91334 |
8704 |
|
M10158 |
5.356 |
N |
90876 |
75 |
3 |
GLY75 |
| 1YIT |
|
Cd |
Cadmium |
91334 |
8704 |
|
M10158 |
5.486 |
N |
90880 |
76 |
3 |
LYS76 |
| 1YIT |
|
Cd |
Cadmium |
91334 |
8704 |
|
M10158 |
5.293 |
O |
90883 |
76 |
3 |
LYS76 |
| 1YIT |
|
Cd |
Cadmium |
91335 |
8705 |
|
M10159 |
5.807 |
O2P |
13814 |
656 |
0 |
G656 |
| 1YIT |
|
Cd |
Cadmium |
91335 |
8705 |
|
M10159 |
4.952 |
O |
79756 |
37 |
O |
ARG37 |
| 1YIT |
|
Cd |
Cadmium |
91335 |
8705 |
|
M10159 |
4.673 |
NE |
79760 |
37 |
O |
ARG37 |
| 1YIT |
|
Cd |
Cadmium |
91335 |
8705 |
|
M10159 |
4.822 |
NH1 |
79762 |
37 |
O |
ARG37 |
| 1YIT |
|
Cd |
Cadmium |
91335 |
8705 |
|
M10159 |
4.882 |
NH2 |
79763 |
37 |
O |
ARG37 |
| 1YIT |
|
Cd |
Cadmium |
91335 |
8705 |
|
M10159 |
5.992 |
N |
79782 |
40 |
O |
HIS40 |
| 1YIT |
|
Cd |
Cadmium |
91335 |
8705 |
|
M10159 |
2.63 |
ND1 |
79788 |
40 |
O |
HIS40 |
| 1YIT |
|
Cd |
Cadmium |
91335 |
8705 |
|
M10159 |
4.693 |
NE2 |
79791 |
40 |
O |
HIS40 |
| 1YIT |
|
Cd |
Cadmium |
91335 |
8705 |
|
M10159 |
5.839 |
N |
79963 |
63 |
O |
LYS63 |