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UniSTS:25539 Links
D20S563E
Homo sapiens chromosome 20, locus EFCAB8
Pan troglodytes chromosome 20, locus EFCAB8

Found by e-PCR in sequences from Homo sapiens and Pan troglodytes.

Primer InformationHelp

Forward primer:CAGACAGTGAAAGGAGTTACAG
Reverse primer:CAGAAGGCAGAGGAGCAG
PCR product size:187 (bp), Homo sapiens

   Homo sapiens
Name: D20S563E
Also known as: Cda15a12 GDB:441216 stSG3040
Polymorphism info:  

Cross References Help
Gene GeneID:388795
 Symbol:EFCAB8
 Description:EF-hand calcium binding domain 8
 Position:20q11.21
UniGeneHs.145500 Transcribed locus
 Hs.702363 Transcribed locus

Mapping InformationHelp
D20S563E Sequence Map: Chr 20|Celera Map Viewer
  Position: 28200200-28200386 (bp)
 
D20S563E Sequence Map: Chr 20|HuRef Map Viewer
  Position: 28233565-28233751 (bp)
 
D20S563E Sequence Map: Chr 20 Map Viewer
  Position: 30909988-30910174 (bp)
 
stSG3040 NCBI RH Map: Chr 20 Map Viewer
  Position: 286.9 (cR)
  Lod score: 2.23
 
stSG3040 GeneMap99-GB4 Map: Chr 20 Map Viewer
  Position: 190.92 (cR3000)
  Lod score: 1.05
  Reference Interval: D20S182-D20S106

Electronic PCR results Help
Genomic (5 of 7)[Show All Hits]
AL035071.17 118427 .. 118613 (187 bp)  
CH003467.1 28153091 .. 28153277 (187 bp)  
CH003515.1 29109596 .. 29109782 (187 bp)  
CH471077.2 1703309 .. 1703495 (187 bp)  
CM000271.1 28200200 .. 28200386 (187 bp)  
 
Working Draft phase 1 (from GenBank HTGS division) (1)
AL354832.10 89161 .. 89347 (187 bp)  
 
ESTs (5 of 32)[Show All Hits]
Z39237.1 44 .. 230 (187 bp)  
H72687.1 24 .. 210 (187 bp)  
H91742.1 45 .. 233 (189 bp)  
AA148783.1 38 .. 224 (187 bp)  
AA193594.1 55 .. 241 (187 bp)  
 
Whole Genome Shotgun sequences (4)
AADD01168867.1 2625 .. 2811 (187 bp)  
AADC01141621.1 117318 .. 117504 (187 bp)  
AADB02020270.1 845379 .. 845565 (187 bp)  
ABBA01019251.1 5316 .. 5502 (187 bp)  
 

   Pan troglodytes
Name: D20S563E
Polymorphism info:  

Cross References Help
Gene GeneID:458175
 Symbol:EFCAB8
 Description:EF-hand calcium binding domain 8
 Position: 

Mapping InformationHelp
D20S563E Sequence Map: Chr 20 Map Viewer
  Position: 29825793-29825979 (bp)

Electronic PCR results Help
Genomic (1)
CM000334.2 29825793 .. 29825979 (187 bp)  
 
ESTs (1)
CB296439.1 73 .. 259 (187 bp)  
 
Whole Genome Shotgun sequences (2)
AADA01167630.1 31382 .. 31568 (187 bp)  
AACZ02190289.1 5151 .. 5337 (187 bp)  
 

 

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