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Status
Public on Jan 31, 2006
Title
A04_Rep1
Sample type
RNA
Channel 1 Source Name
Agrobacterium-inoculated, 4h, replication 1
Organism(s)
Arabidopsis thaliana Characteristics
Arabidopsis thaliana cell suspension culture, LER ecotype.
Extracted molecule
total RNA
Label
Cy5
Channel 2 Source Name
Reference RNA
Organism(s)
Arabidopsis thaliana Characteristics
Arabidopsis thaliana cell suspension culture, LER ecotype.
Extracted molecule
total RNA
Label
Cy3
Description
Arabidopsis thaliana cell cultures sub-cultured every week. Agrobacterium- or mock-inoculated 3 days after sub-culture.
Data processing
Lowess normalization (Cui et al., 2003) done in Matlab, analysis done with SAM (Tusher et al., 2001).
Submission date
Jan 29, 2006
Contact name
Renata Fava Ditt
E-mail(s)
renataditt@gmail.com Phone
(206)685-4755
Organization name
University of Washington
Street address
Hitchcock Hall Box 355325
City
Seattle
State/province
WA
ZIP/Postal code
98195
Country
USA
Platform ID
GPL1911 Series (1)
GSE4116 The Arabidopsis thaliana transcriptome in response to Agrobacterium tumefaciens
Data table header descriptions ID_REF VALUE normalized log2 ratios of inoculated/reference
Data table ID_REF VALUE A000001_01
0.426054
A000002_01
-0.146787
A000003_01
0.080691
A000004_01
0.12259
A000005_01
-0.110359
A000006_01
-0.018524
A000007_01
-0.345648
A000008_01
-0.035915
A000009_01
-0.238658
A000010_01
0.141697
A000011_01
-0.359986
A000012_01
0.056701
A000013_01
1.721889
A000014_01
0.121998
A000015_01
0.056639
A000016_01
0.844986
A000017_01
0.072729
A000018_01
-0.092439
A000019_01
-0.131483
A000020_01
-0.09001
26474 528 Kbytes .Supplementary data files not provided
