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pfam01351: RNase_HII 
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Ribonuclease HII
Statistics
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PSSM-Id: 110359
View PSSM: pfam01351
Aligned: 14 rows
Created: 30-Sep-2008
Updated: 30-Oct-2008
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see PubMed Reference Help
pfam01351 is a member of the superfamily cl00346.
Sequence Alignment?
Format: Row Display: Color Bits: Type Selection:
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1I39_A       23 AGIDEAGKGCVIGPLVVAGVACSDEDRl----rKLGVKDSKKLSQGRREELAEEIRkicr------------tevLKVSP 86
gi 1710612   36 AGVDEVGRGACAGPLVVAACVLGPGRIa----sLAALDDSKKLSEQAREKLFPLIC-------------------RYAVA 92
gi 11387098  15 CGIDEVGRGPLAGPVVAAAVILDPARLpk--tlLERLDDSKKLSKRNREELAELVP-------------------ATAIL 73
gi 1173096   12 AGVDEVGRGPLVGAVVTAAVILDPHNPi------EGLADSKKLSEKKRLALAEEIK-------------------EKARA 66
gi 2507334   13 AGVDEVGRGPLVGAVVTAAVILDPARPi------AGLNDSKKLSEKRRLALYEEIK-------------------EKALS 67
gi 1730743   36 MGIDEAGRGPVLGPMVYAVAYSTQKYQdetiipNYEFDDSKKLTDPIRRMLFSKIYqdneeltqi-gyattcitpLDISR 114
gi 7227913    4 LGIDEAGRGPVIGPLVVAGVMIPERKFsi--lrKMGVKDSKKLTPERRRFLARKIRriar------------vftVKISA 69
1EKE_A        4 IGIDEAGRGPVLGPXVVCAFAIEKEREee--lkKLGVKDSKELTKNKRAYLKKLLEnlgy------------vekRILEA 69
gi 1723422   66 LGVDEAGRGPVLGPMVYAVAYCPVDFDl----tNYGFADSKTLASLKREELLKLICnksnelgknvgwstmsisaRELAA 141
gi 7227926   97 IGSDEVGTGDYFGPMTVVCAYVDKTMLpl--mkELGVKDSKDLKDPQIIEIARNLIkti--------------pySLLVL 160
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1I39_A       87 ENLD---ERMAAKTINEILKECYAEIIL-RLKPE-IAYVD--SPDVI---------PErLSRELEEITGlrvv-----ae 145
gi 1710612   93 YHVVf--IPSAEVDRRGVHVANIEGMRR-AVAGL-AVRPG--YVLSDgf-----rvPG-LPMPSLPVIG----------- 149
gi 11387098  74 G-FGe--ASVEEIDRINILQATFLAMRR-AYDAL-GRECA--HALVDgn-----rpPG-LPCPVRCVVG----------- 129
gi 1173096   67 WALGr--AEADEIDEINILQASLLAMTR-AVKSL-KIQPH--FVLIDgn-----kiPKdLAIPAQAVVK----------- 124
gi 2507334   68 WSLGr--AEPHEIDELNILHATMLAMQR-AVAGL-HIAPE--YVLIDgn-----rcPK-LPMPAMAVVK----------- 124
gi 1730743  115 GMSKf--PPTRNYNLNEQAHDVTMALID-GVIKQ-NVKLS--HVYVDtv-----gpPAsYQKKLEQRFPgvkft----va 179
gi 7227913   70 SDIDr--MRERGFNLNEIEKIAIKRIIP-EAQPD-RVIID--SVDVK---------PErLEEEIRSHFGeievt----ae 130
1EKE_A       70 EEIN---QLXNSINLNDIEINAFSKVAKnLIEKL-NIRDDeiEIYIDacstntkkfEDsFKDKIEDIIKernlnikiiae 145
gi 1723422  142 GMLRy--R--NKYNLNLQAHDTTIDLIK-KVYES-GINVT--EIYVDtv-----gpPIsYQEKLQAHFPqakvt----vt 204
gi 7227926  161 KNEKynsMQEKGMSQGKMKALLHNQAIThLLRKLdGVKPE--AILIDqfa---epgVYfNHLKGRDIVKerty-----fs 230
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
1I39_A      146 hkADEKYPLVAAASIIAKVERE-REIERLKEK---FGDFGSGYASDPRTREVLKEWIASgri--psCVRMRWKTV 214
gi 1710612  150 --GDAAAACIAAASVLAKVSRDrVMVALDADHpgyGFAEHKGYSTPAHSRALARLGPCP-------QHRYSFINV 215
gi 11387098 130 --GDGISLSIAAASVVAKVRRDaMMADLARAHpefGWERNAGYGTAEHLDALKRLGPTP-------HHRRSFAPV 195
gi 1173096  125 --GDSLVAEISAASILAKVARDqEMEELDKQYpeyAFAQHKGYPTKLHLEKLAELGALP-------QHRRSFAPV 190
gi 2507334  125 --GDSRVPEISAASILAKVTRDaEMAALDIVFpqyGFAQHKGYPTAFHLEKLAEHGATE-------HHRRSFGPV 190
gi 1730743  180 kkADSLYCMVSVASVVAKVTRD-ILVESLKRDp--DEILGSGYPSDPKTVAWLKRNQTSlmgwpanMVRFSWQTC 251
gi 7227913  131 hgADTRYYPVAAASIIAKVERD-LEIESIQKKnrkLGDIGSGYPSDPRTREFLESFTYDel---pdFVRRSWATV 201
1EKE_A      146 hkADAKYPVVSAASIIAKAERD-EIIDYYKKIy---gDIGSGYPSDPKTIKFLEDYFKKhkk-lpdIARTHWKTC 215
gi 1723422  205 kkADSLFPIVSLASICAKVTRD-IQLECARESi-rTENWGSGYSSDARTTEWLKVNVDKifgwkgdIVRYSWKTA 277
gi 7227926  231 tkAEGIHLAVAAASIIARYSFL-MEMDKLSRAagmTLPKGAGPHVDEAAAKLILKKGASal---rtFTKLHFANT 301
Citing CDD
Marchler-Bauer A, Anderson JB, Derbyshire MK, DeWeese-Scott C, Gonzales NR, Gwadz M, Hao L, He S, Hurwitz DI, Jackson JD, Ke Z, Krylov D, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH, Mullokandov M, Song JS, Thanki N, Yamashita RA, Yin JJ, Zhang D, Bryant SH. (2007) CDD: a conserved domain database for interactive domain family analysis. Nucleic Acids Res. 35: D237-40
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