proteins
| 6 proteins |
S | COG3330 | Uncharacterized protein conserved in bacteria | Help | |
|---|---|---|---|---|---|
| 1 from | query genome Clostridium acetobutylicum (Clostridiales | Clostridia) | ||||
| CAC2415 | ||||
164 letters (r) 0
0 793 = ||| 1 CAC2415 (164) = 63
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CAC2415
(164 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
CAC2415 310 1e-84
BH1414 46 3e-05
all2705 42 8e-04
TM1439 38 0.011
sll0185 35 0.067
MA0386 32 0.65
MT0539 31 0.90
Rv0518 31 0.90
Cgl2156 30 3.1
lin1044 29 3.7
YPL186c 29 4.9
YMR140w 28 6.3
MA0385 28 8.2
PA2838 28 8.3
NMB0489 28 8.6
all3054_3 28 8.6
# >CAC2415
# Length = 164
#
# Score = 310 bits (793), Expect = 1e-84
# Identities = 164/164 (100%), Positives = 164/164 (100%)
#
# Query: 1 MLGSYETKLVLLVQNAYNIFCYFNISPITIKEFEYRYGEDLWKNSKPVLKIYEVLDGNAS 60
# MLGSYETKLVLLVQNAYNIFCYFNISPITIKEFEYRYGEDLWKNSKPVLKIYEVLDGNAS
# Sbjct: 1 MLGSYETKLVLLVQNAYNIFCYFNISPITIKEFEYRYGEDLWKNSKPVLKIYEVLDGNAS 60
#
# Query: 61 EIRTIYIDSMADNWYIKLDKDDMDVFVKLGRMLPDGTFVALAVSNTVTTPRAHISEDSAV 120
# EIRTIYIDSMADNWYIKLDKDDMDVFVKLGRMLPDGTFVALAVSNTVTTPRAHISEDSAV
# Sbjct: 61 EIRTIYIDSMADNWYIKLDKDDMDVFVKLGRMLPDGTFVALAVSNTVTTPRAHISEDSAV 120
#
# Query: 121 YYVDVSKNFKKQEDSEVNELDEKNNKQDIHKETKPYVFMEGKKN 164
# YYVDVSKNFKKQEDSEVNELDEKNNKQDIHKETKPYVFMEGKKN
# Sbjct: 121 YYVDVSKNFKKQEDSEVNELDEKNNKQDIHKETKPYVFMEGKKN 164
#
#
# >BH1414
# Length = 219
#
# Score = 46.2 bits (108), Expect = 3e-05
# Identities = 32/115 (27%), Positives = 58/115 (49%), Gaps = 7/115 (6%)
#
# Query: 3 GSYE-TKLVLLVQNAYNIFCYFNISPITIKEFEYRYGEDLWKNSKPVLKIYEV----LDG 57
# GSY T++ LL Q ++ +++ S T Y+ +D W+ + L++Y+V DG
# Sbjct: 66 GSYPVTEITLLPQGPTTLYAFWDTSEQTRGLVSYQTDKD-WEQLEKRLRLYDVTSLLFDG 124
#
# Query: 58 -NASEIRTIYIDSMADNWYIKLDKDDMDVFVKLGRMLPDGTFVALAVSNTVTTPR 111
# A+ I++ M +NW I+ + + + LG + P G F+ + S + TPR
# Sbjct: 125 RRANRYVDIHLPEMTNNWLIEHVEPNCTYLIDLGVITPSGAFLPVVRSTPIETPR 179
#
#
# >all2705
# Length = 416
#
# Score = 41.6 bits (96), Expect = 8e-04
# Identities = 35/134 (26%), Positives = 63/134 (46%), Gaps = 13/134 (9%)
#
# Query: 3 GSYETKLVLLVQNAYNIFCYFNISPITIKEFEYRYGEDLWKNSKPVLKIYEVLDGNAS-- 60
# G ++++VLL ++ + Y++I +E + G+ L L+IY+V D N
# Sbjct: 92 GYGDSRIVLLPRDPQWAYAYWDIPNDHKEELRRQGGQQL------ALRIYDVTDVNLEYQ 145
#
# Query: 61 ---EIRTIYIDSMADNWYIKLDKDDMDVFVKLGRMLPDGTFVALAVSNTVTTPRAHISED 117
# I+ D +A WY+ + D D + +G DG ++ LA S V P + S+
# Sbjct: 146 SPHSIQEYPADELAREWYLPIPVSDRDYVLDIGYRAVDGRWLVLARSARVHIPPVYPSD- 204
#
# Query: 118 SAVYYVDVSKNFKK 131
# + V +S NF++
# Sbjct: 205 -WIEDVFISVNFEE 217
#
#
# >TM1439
# Length = 218
#
# Score = 37.7 bits (86), Expect = 0.011
# Identities = 37/134 (27%), Positives = 63/134 (46%), Gaps = 14/134 (10%)
#
# Query: 6 ETKLVLLVQNAYNIFCYFNISPITIKEFEYRYGEDLWKNSKPVLKIYEV----LDG-NAS 60
# + KLVL+ N Y +F Y++ T + + + E K V+++Y+V +G NA
# Sbjct: 47 KNKLVLMPVNPYVVFAYWDFDQRTRELMKQKARE-----GKAVIRLYDVTFIMFNGTNAH 101
#
# Query: 61 EIRTIYIDSM---ADNWYIKLDKDDMDVFVKLGRMLPDGTFVALAVSNTVTTPRAHISED 117
# +D + A N+Y + D ++G + +G FV++ SN TP A S
# Sbjct: 102 RTFEHRLDELTLDAGNFYFNVPMPRADYLSEMGYLDDEGKFVSVLRSNVTRTPAASPSAS 161
#
# Query: 118 SAVYYVDVSKNFKK 131
# S + D+ KN K+
# Sbjct: 162 SRERWYDL-KNKKR 174
#
#
# >sll0185
# Length = 419
#
# Score = 35.0 bits (79), Expect = 0.067
# Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
#
# Query: 3 GSYETKLVLLVQNAYNIFCYFNISPITIKEFEYRYGEDLWKNSKPVLKIYEVLD-----G 57
# G E+++ L+ ++ + Y++I + G+ L L++Y+V D
# Sbjct: 97 GYGESRITLMPRDPQWAYAYWDIPKEHKDALRSQGGQQL------ALRLYDVTDLDWQTA 150
#
# Query: 58 NASEIRTIYIDSMADNWYIKLDKDDMDVFVKLGRMLPDGTFVALAVSNTVTTPRAHISE 116
# + ++ D +A WY+ + D D + +G DG ++ LA S + P + S+
# Sbjct: 151 SPHSVQEYLCDELAREWYLPIPVSDRDYALDIGYRTFDGRWLTLARSTPIRIPPVYPSD 209
#
#
# >MA0386
# Length = 1452
#
# Score = 32.0 bits (71), Expect = 0.65
# Identities = 19/58 (32%), Positives = 29/58 (49%), Gaps = 6/58 (10%)
#
# Query: 25 ISPITIKEFEYRYGEDLWKNSKPVLKIYEVLDGNASEIRTIYIDSMADNWYIKLDKDD 82
# I+ + + + Y YGED W +K E+L+GN + + S + N Y LD DD
# Sbjct: 1096 IANVYLDKMGYAYGEDFWG-----IKCRELLEGNLKNVEA-SVHSDSSNLYDTLDNDD 1147
#
#
# >MT0539
# Length = 231
#
# Score = 31.2 bits (69), Expect = 0.90
# Identities = 10/30 (33%), Positives = 20/30 (66%)
#
# Query: 47 PVLKIYEVLDGNASEIRTIYIDSMADNWYI 76
# P+L+I +VL A +++D +AD+W++
# Sbjct: 167 PMLRIRDVLGAQARAAGAVFVDPIADHWFV 196
#
#
# >Rv0518
# Length = 231
#
# Score = 31.2 bits (69), Expect = 0.90
# Identities = 10/30 (33%), Positives = 20/30 (66%)
#
# Query: 47 PVLKIYEVLDGNASEIRTIYIDSMADNWYI 76
# P+L+I +VL A +++D +AD+W++
# Sbjct: 167 PMLRIRDVLGAQARAAGAVFVDPIADHWFV 196
#
#
# >Cgl2156
# Length = 513
#
# Score = 29.6 bits (65), Expect = 3.1
# Identities = 20/69 (28%), Positives = 35/69 (49%), Gaps = 7/69 (10%)
#
# Query: 75 YIKLDKDDMDVFVKLGRMLPDGTFVALAVSNTVTTPRAHISEDSAVYYVDVSKNFKKQED 134
# +I KDD DVFV+ +++ + +A + V TP +H+ +S Y ++ N +
# Sbjct: 175 FISTGKDDKDVFVE-AQIIVESVLLA---RDLVNTPSSHLYPES---YSVIASNEASKHG 227
#
# Query: 135 SEVNELDEK 143
# + LDEK
# Sbjct: 228 LQTTILDEK 236
#
#
# >lin1044
# Length = 371
#
# Score = 29.3 bits (64), Expect = 3.7
# Identities = 28/118 (23%), Positives = 43/118 (35%), Gaps = 24/118 (20%)
#
# Query: 27 PITIKEFEYRYG-----------------EDLWKNSKPVLKIYEVLDGNASEIRTIYIDS 69
# P I+ YRYG + W+ P+++ L+G +
# Sbjct: 261 PTLIETMTYRYGPHTLSGDDPTRYRTKELDGEWELKDPIVRFRTFLEGKG------LWNE 314
#
# Query: 70 MADNWYIKLDKDDMDVFVKLGRMLPDGTFVALAVSNTVTTPRAHISEDSAVYYVDVSK 127
# +N I K+++ V +K P T L + N TP A I E A+Y SK
# Sbjct: 315 EKENAVIDQAKEEIKVAIKEADATPKQTVTDL-LKNMYETPTAPIKEQLAIYEAKESK 371
#
#
# >YPL186c
# Length = 304
#
# Score = 28.9 bits (63), Expect = 4.9
# Identities = 16/71 (22%), Positives = 37/71 (51%)
#
# Query: 94 PDGTFVALAVSNTVTTPRAHISEDSAVYYVDVSKNFKKQEDSEVNELDEKNNKQDIHKET 153
# P+ +L + T +P+ IS+D + + + ++ +K E + +NE+ + + ++ +KE
# Sbjct: 125 PETPTPSLKGNVTFPSPKTAISQDGSAFAKETTRKERKYEHAPLNEVPVERDPKEENKEL 184
#
# Query: 154 KPYVFMEGKKN 164
# P E +N
# Sbjct: 185 SPNFSQEQTEN 195
#
#
# >YMR140w
# Length = 489
#
# Score = 28.5 bits (62), Expect = 6.3
# Identities = 25/97 (25%), Positives = 45/97 (45%), Gaps = 9/97 (9%)
#
# Query: 56 DGNASEIRTIYIDSMADNWYIKLDKDDMDVFVKLGRMLPDGTFVALAVSNTVTTP---RA 112
# DG I I D++ +W IKL+K+ +L R + T A+ +SN + P R
# Sbjct: 377 DGGQPNISAITSDTIRPDWEIKLNKER----ARLMRRSANAT--AIHISNRLIDPSHSRR 430
#
# Query: 113 HISEDSAVYYVDVSKNFKKQEDSEVNELDEKNNKQDI 149
# + S D S + + + +NEL+++ ++ I
# Sbjct: 431 RNTSHSITPIHDESTSASRSPEPTINELEDQMVREAI 467
#
#
# >MA0385
# Length = 1922
#
# Score = 28.1 bits (61), Expect = 8.2
# Identities = 15/48 (31%), Positives = 25/48 (51%)
#
# Query: 25 ISPITIKEFEYRYGEDLWKNSKPVLKIYEVLDGNASEIRTIYIDSMAD 72
# I+ + I Y YGED+W S + +DG++ E I+ D++ D
# Sbjct: 1540 IAELYIDRMSYVYGEDVWGESIADIVSQFQVDGSSLENTDIFKDNLGD 1587
#
#
# >PA2838
# Length = 323
#
# Score = 28.1 bits (61), Expect = 8.3
# Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
#
# Query: 39 EDLWKNSKPVLKIYEVLDGNASEIRTIYIDSMADNWYIKLD-----------KDDMDVFV 87
# ED ++ L+++ V + + + +D + + + +D ++ +DV +
# Sbjct: 84 EDSQSHASGRLRLHAVTELGLEHLMPLLVDYLDGHPDVSVDLTLAQGTPALLEEGLDVLI 143
#
# Query: 88 KLGRMLPDGTFVA 100
# LGR LPD T VA
# Sbjct: 144 TLGRTLPDSTLVA 156
#
#
# >NMB0489
# Length = 293
#
# Score = 28.1 bits (61), Expect = 8.6
# Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
#
# Query: 96 GTFVALAVSNTVTTPRAHISEDSAVY-----YVDVSKNFKKQEDSEVNELDEKNNKQDIH 150
# GT A++ T A +S+ +Y Y+D + NFK E SEV + +++IH
# Sbjct: 199 GTGTAISAKTLDTQTTARLSKPEQLYSTMKGYIDKTANFKSYELSEVPLRADMIKQREIH 258
#
#
# >all3054_3
# Length = 303
#
# Score = 28.1 bits (61), Expect = 8.6
# Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
#
# Query: 45 SKPVLKIYEVLDGNASEIRTIYI-----DSMADNWYIKLDKDDMDVFVKLGRMLPDGTFV 99
# S+ L++Y+ + + S R + D + + Y+ + + D D ++G PD +V
# Sbjct: 154 SQLALRLYDATNIDQSYQRPQLVQQYEFDEITCDRYVSIPQSDRDYMTEVGYATPDDEWV 213
#
# Query: 100 ALAVSNTV 107
# +A S+TV
# Sbjct: 214 TIASSDTV 221
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.316 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,200,190
Number of Sequences: 192987
Number of extensions: 790464
Number of successful extensions: 2510
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2494
Number of HSP's gapped (non-prelim): 35
length of query: 164
length of database: 59,019,183
effective HSP length: 101
effective length of query: 63
effective length of database: 39,527,496
effective search space: 2490232248
effective search space used: 2490232248
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
S2: 61 (28.1 bits)