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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs33050084          
refSNP ID: rs33050084
Organism:mouse (Mus musculus)
Molecule Type:Genomic
Created/Updated in build:125/128
Map to Genome Build:37.1
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/T
Strain:not submitted
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss39487983 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs33050084 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss39487983ABI|mCV22803117byFreqfwd/A/Tgagacctcagctggttgtaagttgtgttctgtaactgaaacttactttttgaatggctgt07/16/0512/22/05125Genomicunknown
ss56109246ENSEMBL|NT_039641.5_3717822fwd/A/Tgagacctcagctggttgtaagttgtgttctgtaactgaaacttactttttgaatggctgt06/11/0606/11/06127Genomicunknown
ss60545712PERLEGEN|NES16557784fwd/A/Tgagacctcagctggttgtaagttgtgttctgtaactgaaacttactttttgaatggctgt06/22/0606/22/06127Genomic100 %

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs33050084|allelePos=301|totalLen=601|taxid=10090|snpclass=1|alleles='A/T'|mol=Genomic|build=127
 AGGGATCCAG TGTTATCTTT TGGCTTCTGA GGACACCAGA CATGTATGTT ATACACACAC
 AACTTTAAGA AAAATGTCCA TATAAAAAAT ACAATGAAAT AAAAGGATTC CAATAGCATC
 CCATTTGCCT GGCTTCTGGG AATCTTAGGA AACCAAGAGT TTCTACAACA AGGTTGGTTT
 CAGTTTTCTT GTTCCTCTCA GAGTTTCCTT AAGTCTATAG TGAGAGCCAA GTACTTCATT
 TACACCACAG GAACCGAAGA GTGTAAGAAG GAGACCTCAG CTGGTTGTAA GTTGTGTTCT
 W
 GTAACTGAAA CTTACTTTTT GAATGGCTGT TATATGTGAT GGACACTTCC TAAAACCCTG
 TGAAGAGATG TTTAAGACCA TATTTACTTT CACCAGATGG CTGCTGAGTT CTTGACTTAG
 AATATGTGTT GAACAGAAAC ACTTGAAACT ATGGGGAAAT GGGTCAGTGT ATAAGTGCTT
 GCCTTGCAAT CATGCAGAAC TGAGTTGAAG ACACTTGAAA AAAGTCAAGT GGAGGAGTCT
 GATTCTTGTG CTTTTTATAT GTCCACCCAT TATGCTATAA TTGTTGGTAC AATGTGTTGC

  GeneView back to top
GeneView via analysis of contig annotation: Fpr-rs2 formyl peptide receptor 2
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
CeleraNW_001030599->NM_008039
svfunction
C57BL/6JNT_039649->NM_008039
svfunction
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
CeleraNW_001030599->NM_008039->NP_032065703981forwardintron
C57BL/6JNT_039649->NM_008039->NP_0320654218664forwardintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs33050084 maps exactly once on NCBI mouse chromosome 17
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
17NT_039649.7421866418024878plusAref_strainC57BL/6JC57BL/6Jview300
17NW_001030599.170398118828656plusAalt_assembly_1CeleraCeleraview300

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_039641.5
dbSNP Blast Analysis
GenBank HTGS Finished:GenBank HTGS Draft:
AC165361.3 AC171405.1 AC079487.1 AC170904.1 AC170920.1

  Population Diversity back to top

Sample AscertainmentGenotype Detailnew.gifAlleles
ss#PopulationIndividual
Group		Chrom.
Sample Cnt.
SourceA/A
T/T
ss39487983CRAMUS_MOUSE 8IG 1 3
ss60545712MM_PANEL2 30IG 10 5

SummaryAverage
Het.+/- std err:		Individual
Count		Founders
Count		Individual
Overlap		Genotype
Conflict
-1.000+/-0171720

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byFreqUNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .