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Blast 2 Sequences results

PubMed Entrez BLAST OMIM Taxonomy Structure

BLAST 2 SEQUENCES RESULTS VERSION BLASTP 2.2.20 [Feb-08-2009]

Matrix gap open: gap extension:
x_dropoff: expect: wordsize: Filter View option    
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Show CDS translation

Sequence 1: gi|124256484|ret proto-oncogene isoform a [Mus musculus] >gi|51338723|sp|P35546.2|RET_MOUSE RecName: Full=Proto-oncogene tyrosine-protein kinase receptor ret; Short=C-ret; Flags: Precursor >gi|6644370|gb|AAF21033.1|AF209436_1 c-ret proto-oncogene [Mus musculus] >gi|148667175|gb|EDK99591.1| ret proto-oncogene, isoform CRA_a [Mus musculus]
Length = 1115 (1 .. 1115)

Sequence 2: gi|912987|c-ret proto-oncogene product receptor tyrosine kinase [chickens, Peptide, 1107 aa]
Length = 1107 (1 .. 1107)





2 1

NOTE:Bitscore and expect value are calculated based on the size of the nr database.





 Score = 1404 bits (3635),  Expect = 0.0
 Identities = 712/1104 (64%), Positives = 830/1104 (75%), Gaps = 19/1104 (1%)

Query  3     KATSGAAGLGLKLILLLPLLGEAPLGLYFSRDAYWERLYVDQPAGTPLLYVHALRDAPGE  62
             ++  GAAGL         LL  A  GLYF R  Y E +Y+DQPAG PLL +HALRD+ GE
Sbjct  2     RSMRGAAGL--------LLLCGASFGLYFPRKEYSENVYIDQPAGAPLLRIHALRDSHGE  53

Query  63    VPSFRLGQHLYGVYRTRLHENDWIRINETTGLLYLNQSLDHSSWEQLSIRNGGFPLLTIF  122
                F L Q+L  + R R HE+ W +I E  GLLYL++SLD   +  LS+ N   PL  + 
Sbjct  54    TAHFHLCQNLI-ISRARSHESHWFQIREKMGLLYLSKSLDREDFNMLSVGNW-MPLSKVM  111

Query  123   LQVFLGSTAQREGECHWPGCTRVYFSFINDTFPNCSSFKAQDLCIPETAVSFRVRENRPP  182
             L VFL S   +E EC     T V  S IN T P CSS  A+ LC  E  +SF ++EN+PP
Sbjct  112   LYVFLSSHPFQEKECDSATRTTVVLSLINATAPACSSLSARQLCFTEMDLSFHIKENKPP  171

Query  183   GTFYHFHMLPVQFLCPNISVKYSLLGGDSLPFRCDPDCLEVSTRWALDRELREKYVLEAL  242
             GTF+   +  V  LC N+S+   +L  + L FR + +   VS    LDRE RE+Y L   
Sbjct  172   GTFHQLQLPSVHHLCQNLSITDKMLAAEGLNFRYNENTTGVSVTQRLDREERERYELLIA  231

Query  243   CIVAGPGANKETVTLSFPVTVYDEDDSAPTFSGGVGTASAVVEFKRKEGTVVATLQVFDA  302
                   G  +  V +   V V DEDDS P    G  TA AVVEF RKEGTV+ATL V+DA
Sbjct  232   KCTVREGFREMEVEVPSLVNVLDEDDSPPFLPNGTDTADAVVEFNRKEGTVLATLTVYDA  291

Query  303   DVVPASG--ELVRRYTNTLLSGDSWAQQTFRVEHSPIETLVQVNNNSVRATMHNYKLILN  360
             D  P        ++YT T+++ D W  +TFRVEH   E     N + VR T H YKL+LN
Sbjct  292   DTTPIYPLESSRKKYTGTIITDDPWINETFRVEHIFDEIHFSPNGSQVRGTQHEYKLVLN  351

Query  361   RSLSISESRVLQLAVLVNDSDFQGPGAGGILVLHFNVSVLPVTLNLPRA-YSFPVNKRAR  419
             +S+S++E R  QL VLV D++F GP     ++LHFNVS+LPV++  P   Y F VN+ A+
Sbjct  352   KSISVTEHRSFQLDVLVTDTEFNGPEKS--VMLHFNVSILPVSIQFPNTTYRFTVNRNAQ  409

Query  420   RYAQIGKVCVENCQEFSGVSIQYKLQPSSINCTALGVVTSPEDTSGTLFVNDTEALRRPE  479
             R+AQIGK+C+ENC +F GV+I YKL   +++C A+G++   ED  G+L+VND+  L RPE
Sbjct  410   RFAQIGKICIENCMKFRGVNITYKLLSPNVSCYAVGILQGREDKYGSLYVNDSSVLLRPE  469

Query  480   CTKLQYTVVATDRQTRRQTQASLVVTVEGTSITEEVGCPKSCAVNKRRPECEECGGLGSP  539
             C ++QYTV ATD+Q+R+ T+    V +EG    +E  CP SCA++K   ECEECGGLG  
Sbjct  470   CKEIQYTVHATDKQSRKHTKTLFTVVLEGPLFKKEEDCPDSCAMSKHLAECEECGGLGVL  529

Query  540   TGRCEWRQGDGKGITRNFSTCSPSTRTCPDGHCDAVESRDANICPQDCLRADIVGGHERG  599
             TGRC+WRQG GKGIT N+STCSPST+TCPDG CD VES+D  ICPQDC   +I GGH +G
Sbjct  530   TGRCQWRQGSGKGITTNYSTCSPSTKTCPDGTCDVVESKDPAICPQDCTNGNI-GGHGKG  588

Query  600   ERQ-GIKAGYGICNCFPDEKKCFCEPEDSQGPLCDALCRTIITAA-LFSLIISILLSIFC  657
                 GIK+G+GIC CFP  + C+CE +D +   CD +C+T+I  A LFS IIS+LLS + 
Sbjct  589   TGNLGIKSGHGICYCFP-RQNCYCEKDDIKEQFCDEVCKTVIAGAVLFSFIISVLLSSYF  647

Query  658   VCHHHKHGHKPPIASAEMTFCRPAQGFPISYSSSGTRRPSLDSTENQVPVDSFKIPEDPK  717
             +  +HK+  KPPIASAEMTF RPAQ +PISYSS+  RRPSLDS ENQV VD+FKIPEDPK
Sbjct  648   IHRYHKNSPKPPIASAEMTFRRPAQSYPISYSSTNVRRPSLDSMENQVSVDTFKIPEDPK  707

Query  718   WEFPRKNLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASQSELRDLLSEF  777
             WEFPRKNLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASQSELRDLLSEF
Sbjct  708   WEFPRKNLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASQSELRDLLSEF  767

Query  778   NLLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRDSRKIGPAYVSGGGSRNSS  837
             NLLKQ NHPHVIKLYGACSQDGPL LIVEYAKYGSLR FLR+SRK+GP+YV   G+RNSS
Sbjct  768   NLLKQGNHPHVIKLYGACSQDGPLYLIVEYAKYGSLRSFLRESRKVGPSYVGSDGNRNSS  827

Query  838   SLDHPDERVLTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLS  897
              LD+PDER LTMGDLISFAWQISRGMQYLAEMKLVHRDLAARN+LVAEGRKMKISDFGLS
Sbjct  828   YLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLVAEGRKMKISDFGLS  887

Query  898   RDVYEEDSYVKKSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIP  957
             RDVYEEDSYVK+SKGRIPVKWM IESLFDHIYTTQSDV SFGVLLWEIVTLG NPYPGI 
Sbjct  888   RDVYEEDSYVKRSKGRIPVKWMGIESLFDHIYTTQSDVCSFGVLLWEIVTLGANPYPGIA  947

Query  958   PERLFNLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVKSRDYL  1017
             PERLFNLLKTG+RMERP+ CSEEMY LML+CWKQEPDKRP FA+ISK+LEKMMVKSRDYL
Sbjct  948   PERLFNLLKTGYRMERPETCSEEMYNLMLRCWKQEPDKRPTFAEISKELEKMMVKSRDYL  1007

Query  1018  DLAASTPSDSLLYDDGLSEEETPLVDCNNAPLPRSLPSTWIENKLYGMSDPNWPGESPVP  1077
             DLAASTPSDSL+YDDGLSEEETPLVDCNNAPLPR+LPSTWIENKLYGMS PNWP ESPVP
Sbjct  1008  DLAASTPSDSLIYDDGLSEEETPLVDCNNAPLPRALPSTWIENKLYGMSYPNWPEESPVP  1067

Query  1078  LTRADGTSTGFPRYANDSVYANWM  1101
             LTR DGT++ F RYANDSVYANWM
Sbjct  1068  LTRFDGTNSVFSRYANDSVYANWM  1091


CPU time:     0.06 user secs.	    0.04 sys. secs	    0.10 total secs.