BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= TF1328
(379 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|153890432|ref|ZP_02011512.1| cytidyltransferase-related ... 106 3e-21
gi|15921542|ref|NP_377211.1| hypothetical protein ST1279 [S... 89 5e-16
gi|119719598|ref|YP_920093.1| cytidyltransferase-related do... 88 1e-15
gi|146304499|ref|YP_001191815.1| cytidyltransferase-related... 86 4e-15
gi|70607091|ref|YP_255961.1| hypothetical protein Saci_1333... 84 1e-14
gi|15897833|ref|NP_342438.1| hypothetical protein SSO0954 [... 79 6e-13
gi|156937829|ref|YP_001435625.1| cytidyltransferase-related... 78 1e-12
gi|118431811|ref|NP_148511.2| putative cytidylyltransferase... 71 1e-10
gi|19704265|ref|NP_603827.1| Glycerol-3-phosphate cytidylyl... 67 1e-09
gi|148323445|gb|EDK88695.1| cytidylyltransferase [Fusobacte... 67 1e-09
gi|15669368|ref|NP_248173.1| glycerol-3-phosphate cytidyltr... 67 2e-09
gi|34763835|ref|ZP_00144744.1| D-glycero-D-manno-heptose-1-... 67 3e-09
gi|95929366|ref|ZP_01312109.1| RfaE bifunctional protein, d... 66 4e-09
gi|126465115|ref|YP_001040224.1| cytidyltransferase-related... 66 4e-09
gi|20094016|ref|NP_613863.1| Cytidylyltransferase [Methanop... 65 6e-09
gi|124026962|ref|YP_001012282.1| cytidylyl transferase, Tag... 64 2e-08
gi|57642209|ref|YP_184687.1| glycerol-3-phosphate cytidylyl... 64 2e-08
gi|150401726|ref|YP_001325492.1| cytidyltransferase-related... 64 2e-08
gi|147921759|ref|YP_684419.1| glycerol-3-phosphate cytidylt... 63 3e-08
gi|73669580|ref|YP_305595.1| glycerol-3-phosphate cytidyltr... 63 3e-08
gi|152988346|ref|YP_001351050.1| LPS biosynthesis protein R... 63 3e-08
gi|146305632|ref|YP_001186097.1| rfaE bifunctional protein ... 63 4e-08
gi|20090671|ref|NP_616746.1| glycerol-3-phosphate cytidyltr... 63 4e-08
gi|148642919|ref|YP_001273432.1| glycerol-3-phosphate cytid... 62 5e-08
gi|67939354|ref|ZP_00531858.1| Cytidyltransferase-related [... 62 5e-08
gi|156718936|ref|ZP_02060590.1| rfaE bifunctional protein [... 62 5e-08
gi|148265239|ref|YP_001231945.1| rfaE bifunctional protein ... 62 6e-08
gi|118475685|ref|YP_892552.1| bifunctional protein HldE [Ca... 62 7e-08
gi|15600189|ref|NP_253683.1| LPS biosynthesis protein RfaE ... 62 9e-08
gi|116053144|ref|YP_793465.1| lipopolysaccharide biosynthes... 62 9e-08
gi|67158052|ref|ZP_00419142.1| Cytidyltransferase-related d... 61 1e-07
gi|110600402|ref|ZP_01388623.1| Cytidyltransferase-related:... 61 1e-07
gi|48478082|ref|YP_023788.1| glycerol-3-phosphate cytidylyl... 61 1e-07
gi|82702915|ref|YP_412481.1| RfaE bifunctional protein, dom... 61 1e-07
gi|126008772|ref|ZP_01709343.1| hypothetical protein Faci_0... 61 2e-07
gi|77918886|ref|YP_356701.1| putative ADP-heptose synthase ... 60 2e-07
gi|42524647|ref|NP_970027.1| ADP-heptose synthase [Bdellovi... 60 2e-07
gi|39997183|ref|NP_953134.1| ADP-heptose synthase [Geobacte... 60 2e-07
gi|94970814|ref|YP_592862.1| RfaE bifunctional protein, dom... 60 2e-07
gi|88858455|ref|ZP_01133097.1| bifunctional ADP-L-glycero-D... 60 2e-07
gi|78222142|ref|YP_383889.1| RfaE bifunctional protein, dom... 60 2e-07
gi|108563266|ref|YP_627582.1| ADP-heptose synthase [Helicob... 60 2e-07
gi|21226344|ref|NP_632266.1| Glycerol-3-phosphate cytidylyl... 60 2e-07
gi|91775122|ref|YP_544878.1| RfaE bifunctional protein, dom... 60 2e-07
gi|118755147|ref|ZP_01602939.1| rfaE bifunctional protein [... 60 3e-07
gi|67479235|ref|XP_654999.1| cytidylyltransferase [Entamoeb... 60 3e-07
gi|118581990|ref|YP_903240.1| rfaE bifunctional protein [Pe... 60 3e-07
gi|116749120|ref|YP_845807.1| cytidyltransferase-related do... 60 3e-07
gi|78776779|ref|YP_393094.1| RfaE bifunctional protein, dom... 59 4e-07
gi|150400833|ref|YP_001324599.1| rfaE bifunctional protein ... 59 5e-07
gi|15611859|ref|NP_223510.1| putative ADP-D-glycero-D-manno... 59 5e-07
gi|114777188|ref|ZP_01452199.1| RfaE bifunctional protein, ... 59 5e-07
gi|15645477|ref|NP_207652.1| ADP-heptose synthase (rfaE) [H... 59 7e-07
gi|71279534|ref|YP_270855.1| glycerol-3-phosphate cytidyltr... 59 7e-07
gi|109671210|ref|ZP_01373472.1| bifunctional protein HldE [... 59 7e-07
gi|146284137|ref|YP_001174290.1| LPS biosynthesis protein R... 58 9e-07
gi|156861874|gb|EDO55305.1| hypothetical protein BACUNI_009... 58 9e-07
gi|15605755|ref|NP_213132.1| glycerol-3-phosphate cytidyltr... 58 9e-07
gi|68552585|ref|ZP_00591973.1| Cytidyltransferase-related [... 58 9e-07
gi|156869591|gb|EDO62963.1| hypothetical protein CLOLEP_002... 58 1e-06
gi|118744471|ref|ZP_01592463.1| rfaE bifunctional protein [... 58 1e-06
gi|152991190|ref|YP_001356912.1| ADP-heptose synthase [Nitr... 57 1e-06
gi|77361246|ref|YP_340821.1| bifunctional ADP-L-glycero-D-m... 57 1e-06
gi|149197450|ref|ZP_01874501.1| ADP-heptose synthase [Lenti... 57 1e-06
gi|58039486|ref|YP_191450.1| Bifunctional protein RfaE (inv... 57 2e-06
gi|150402117|ref|YP_001329411.1| cytidyltransferase-related... 57 2e-06
gi|134045789|ref|YP_001097275.1| cytidyltransferase-related... 57 2e-06
gi|154174008|ref|YP_001408598.1| bifunctional protein HldE ... 57 2e-06
gi|109947746|ref|YP_664974.1| ADP-heptose synthase [Helicob... 57 2e-06
gi|83774831|dbj|BAE64954.1| unnamed protein product [Asperg... 57 2e-06
gi|34557093|ref|NP_906908.1| PUTATIVE ADP-HEPTOSE SYNTHASE ... 57 2e-06
gi|86134188|ref|ZP_01052770.1| glycerol-3-phosphate cytidyl... 57 2e-06
gi|57168032|ref|ZP_00367171.1| rfaE protein [Campylobacter ... 57 2e-06
gi|146329580|ref|YP_001209025.1| ADP-heptose synthase [Dich... 57 3e-06
gi|15678864|ref|NP_275981.1| autotrophic growth protein [Me... 57 3e-06
gi|149173941|ref|ZP_01852570.1| RfaE bifunctional protein, ... 57 3e-06
gi|145596486|ref|YP_001160783.1| rfaE bifunctional protein ... 57 3e-06
gi|145618491|ref|ZP_01774549.1| rfaE bifunctional protein [... 56 3e-06
gi|90411896|ref|ZP_01219904.1| putative ADP-heptose synthas... 56 3e-06
gi|88603647|ref|YP_503825.1| Cytidyltransferase-related [Me... 56 3e-06
gi|119468545|ref|ZP_01611636.1| fused heptose 7-phosphate k... 56 4e-06
gi|45358506|ref|NP_988063.1| glycerol-3-phosphate cytidyltr... 56 4e-06
gi|150008207|ref|YP_001302950.1| hypothetical protein BDI_1... 56 4e-06
gi|145220368|ref|YP_001131077.1| rfaE bifunctional protein ... 56 4e-06
gi|89091905|ref|ZP_01164860.1| LPS biosynthesis protein Rfa... 56 4e-06
gi|119880477|ref|ZP_01646812.1| rfaE bifunctional protein [... 55 7e-06
gi|26249531|ref|NP_755571.1| Putative glycerol-3-phosphate ... 55 8e-06
gi|24215110|ref|NP_712591.1| glycerol-3-phosphate cytidylyl... 55 9e-06
gi|118594554|ref|ZP_01551901.1| RfaE bifunctional protein, ... 55 9e-06
gi|54024380|ref|YP_118622.1| hypothetical protein nfa24110 ... 55 9e-06
>gi|153890432|ref|ZP_02011512.1| cytidyltransferase-related domain [Opitutaceae bacterium TAV2]
gi|151583499|gb|EDN46972.1| cytidyltransferase-related domain [Opitutaceae bacterium TAV2]
Length = 374
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 65/173 (37%), Positives = 93/173 (53%), Gaps = 7/173 (4%)
Query: 5 KVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKARKTIHTEDERLYMVRA 63
+VFVSGCYD+LH+GHV FF EA G L V S + + K RK+ ++ + ++ A
Sbjct: 3 RVFVSGCYDILHAGHVQFFREARALGSHLTVSFASSEVLWIHKHRKSSLPDEHKAALIAA 62
Query: 64 LKSVKEAWVNSGSGV-LDFVEDLKRLQPDIFFVNSDG-HTPAKERLCQELGIRYIVSQRI 121
L V E + G +DF ED RL+PDI V D + P K LC ++G RY+V +
Sbjct: 63 LDMVDEVVIGRGHDEGIDFREDFLRLRPDILAVTEDDKYAPLKRELCAQVGARYVVLPKT 122
Query: 122 PHGGLPVRSTTA---LRKECLIPYRLDLAGGWLDQPSVSKYCPGAVLTISIEP 171
P P+ +T +R P R+D AGGWLD P ++ +V+ +I P
Sbjct: 123 PPQFTPISTTEIVRYIRAPQEAPLRVDFAGGWLDVPMYAR-AGASVVNCAISP 174
>gi|15921542|ref|NP_377211.1| hypothetical protein ST1279 [Sulfolobus tokodaii str. 7]
gi|15622328|dbj|BAB66320.1| 228aa long conserved hypothetical protein [Sulfolobus tokodaii str.
7]
Length = 228
Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 44/113 (38%), Positives = 74/113 (65%), Gaps = 4/113 (3%)
Query: 4 KKVFVSGCYDMLHSGHVAFFEEAATHGDLYVGIGSDKTIHELKARKTIHTEDERLYMVRA 63
KKVFV G +D+LH GH+ F +EA+ +G +YV + DK ++K RK I+ E++RL +V++
Sbjct: 85 KKVFVGGTFDILHPGHIEFLKEASRYGRVYVSVARDKNSEKVKGRKPINDENQRLEVVKS 144
Query: 64 LKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSDGHTPAKERLCQELGIRYI 116
++ V EA++ DF++ ++R++PDI F+ D H + +L +EL R I
Sbjct: 145 IRYVYEAFLGDEK---DFLKSVERVKPDILFLGPDQHVD-ENKLKEELKKRGI 193
>gi|119719598|ref|YP_920093.1| cytidyltransferase-related domain [Thermofilum pendens Hrk 5]
gi|119524718|gb|ABL78090.1| cytidyltransferase-related domain [Thermofilum pendens Hrk 5]
Length = 225
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 44/113 (38%), Positives = 72/113 (63%), Gaps = 4/113 (3%)
Query: 3 KKKVFVSGCYDMLHSGHVAFFEEAATHGDLYVGIGSDKTIHELKARKTIHTEDERLYMVR 62
+K+V V G +D+LH GH+ F A+ G++YV + DKT+ + K R+ + +E+ERL M++
Sbjct: 91 RKRVLVGGVFDLLHPGHIYFLRRASELGNVYVVVARDKTVIDTKGRQPLFSEEERLEMLK 150
Query: 63 ALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSD--GHTPAKERLCQELGI 113
ALK V +A++ G +F L+R++PDI F+ +D G P E+ QE G+
Sbjct: 151 ALKFVSDAFL--GDYPPNFANALRRVKPDIVFLGADQGGLLPIVEKAVQEAGL 201
>gi|146304499|ref|YP_001191815.1| cytidyltransferase-related domain [Metallosphaera sedula DSM 5348]
gi|145702749|gb|ABP95891.1| cytidyltransferase-related domain [Metallosphaera sedula DSM 5348]
Length = 216
Score = 85.9 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 45/124 (36%), Positives = 77/124 (62%), Gaps = 6/124 (4%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGDLYVGIGSDKTIHELKARKTIHTEDERLYMV 61
G KKVFV G +D++H GH+ F AA+ G +YV + DK ++K RK ++ E++RL +V
Sbjct: 72 GSKKVFVGGTFDIIHPGHIEFLRRAASLGRVYVAVSRDKNAEKVKGRKPVNDENQRLEVV 131
Query: 62 RALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSDGHTPAKERLCQELGIRYIVSQ-- 119
++++ V EA++ + DF++ ++R++PDI F+ D K L +EL R I+ +
Sbjct: 132 KSIRYVYEAFLGDEN---DFLKSVERVKPDIIFLGPDQKVDEKA-LKEELARRGILVEVV 187
Query: 120 RIPH 123
R+ H
Sbjct: 188 RLEH 191
>gi|70607091|ref|YP_255961.1| hypothetical protein Saci_1333 [Sulfolobus acidocaldarius DSM 639]
gi|68567739|gb|AAY80668.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639]
Length = 228
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 88/146 (60%), Gaps = 13/146 (8%)
Query: 4 KKVFVSGCYDMLHSGHVAFFEEAATHGDLYVGIGSDKTIHELKARKTIHTEDERLYMVRA 63
K+VFV+G +D+LH GH+AF EA+ +G +YV + DK ++K RK I+ E++RL ++++
Sbjct: 85 KRVFVAGTFDILHPGHIAFLREASKYGRVYVAVARDKNSEKIKGRKPINDENQRLEVIKS 144
Query: 64 LKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSDGHTPAKERLCQELGIRYIVSQRIPH 123
+K V +A++ DF++ ++R++P+I + D +++L +L R ++ ++I
Sbjct: 145 VKYVYDAFLGDEK---DFLKSVERVKPNIIVLGPDQKVD-EQKLIDDLKNRGVIVEKIVR 200
Query: 124 GGLPVR-------STTALRKECLIPY 142
+P R ST+++ E L Y
Sbjct: 201 --IPSRINNWAHSSTSSIINEVLKRY 224
>gi|15897833|ref|NP_342438.1| hypothetical protein SSO0954 [Sulfolobus solfataricus P2]
gi|13814134|gb|AAK41228.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
Length = 226
Score = 78.6 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 70/118 (59%), Gaps = 4/118 (3%)
Query: 4 KKVFVSGCYDMLHSGHVAFFEEAATHGDLYVGIGSDKTIHELKARKTIHTEDERLYMVRA 63
KKVFV+G +D+LH GH+ F +EA+ +G +YV + D +K RK I+ E RL ++++
Sbjct: 82 KKVFVAGTFDILHPGHIEFLKEASKYGRVYVTVARDSNSERIKGRKPINDEQTRLEIIKS 141
Query: 64 LKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSDGHTPAKERLCQELGIRYIVSQRI 121
++ V +A + DF++ ++R+ PDI F+ D + +L +EL R + Q I
Sbjct: 142 IRYVFDAILGDQE---DFLKSVERINPDIIFLGPDQKVD-EAKLLEELKKRGLSPQII 195
>gi|156937829|ref|YP_001435625.1| cytidyltransferase-related domain protein [Ignicoccus hospitalis
KIN4/I]
gi|156566813|gb|ABU82218.1| cytidyltransferase-related domain protein [Ignicoccus hospitalis
KIN4/I]
Length = 226
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/96 (39%), Positives = 62/96 (64%), Gaps = 4/96 (4%)
Query: 3 KKKVFVSGCYDMLHSGHVAFFEEAATHGDLYVGIGSDKTIHELKARKTIHTEDERLYMVR 62
+K+VFV G +D++H GHV +EA+ GD+ V + D+T+ LK R + +++R Y+V
Sbjct: 81 RKRVFVGGTFDIVHPGHVELLKEASKLGDVIVVVARDETVKRLKGRGPVVPQEQRRYVVG 140
Query: 63 ALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSD 98
+LK VKEA+V G D +E + +L+PD+ F+ D
Sbjct: 141 SLKYVKEAYV----GGEDPIETVVKLKPDVIFLGPD 172
>gi|118431811|ref|NP_148511.2| putative cytidylyltransferase [Aeropyrum pernix K1]
gi|116063133|dbj|BAA81293.2| putative cytidylyltransferase [Aeropyrum pernix K1]
Length = 246
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/96 (37%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Query: 3 KKKVFVSGCYDMLHSGHVAFFEEAATHGDLYVGIGSDKTIHELKARKTIHTEDERLYMVR 62
+K+VFV G +++LH GHV A++ G LYV I D T+ ++K RK I E RL +V
Sbjct: 100 EKRVFVGGTFEILHPGHVELLRYASSLGKLYVVIARDSTVEKIKGRKPILGEKSRLKVVS 159
Query: 63 ALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSD 98
A++ V A++ S DF++ +++++PDI + D
Sbjct: 160 AVRYVYNAFLGSEK---DFLDSVEKVKPDIIVLGPD 192
>gi|19704265|ref|NP_603827.1| Glycerol-3-phosphate cytidylyltransferase [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|19714497|gb|AAL95126.1| Glycerol-3-phosphate cytidylyltransferase [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 160
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKAR-KTIHTEDERLY 59
GKK VF +GC+D+LH+GHV + EA GD L VG+ SDK++ +LK + I++E++R +
Sbjct: 25 GKKVVFTNGCFDILHTGHVTYLNEAKRQGDILIVGVNSDKSVKKLKGETRPINSENDRAF 84
Query: 60 MVRALKSV 67
++ LK+V
Sbjct: 85 VLDGLKAV 92
>gi|148323445|gb|EDK88695.1| cytidylyltransferase [Fusobacterium nucleatum subsp. polymorphum
ATCC 10953]
Length = 154
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKAR-KTIHTEDERLY 59
GKK VF +GC+D+LH+GHV + EA GD L VG+ SDK++ +LK + I++E++R +
Sbjct: 19 GKKVVFTNGCFDILHTGHVTYLNEAKRQGDILVVGVNSDKSVKKLKGETRPINSENDRSF 78
Query: 60 MVRALKSV 67
++ LK+V
Sbjct: 79 VLDGLKAV 86
>gi|15669368|ref|NP_248173.1| glycerol-3-phosphate cytidyltransferase (taqD) [Methanocaldococcus
jannaschii DSM 2661]
gi|41018410|sp|Q58579|Y1179_METJA Uncharacterized protein MJ1179
gi|1591806|gb|AAB99182.1| glycerol-3-phosphate cytidyltransferase (taqD) [Methanocaldococcus
jannaschii DSM 2661]
Length = 149
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 4/111 (3%)
Query: 3 KKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKARKTIHTEDERLYMV 61
KK+V +G +D+LH GH + A + GD L V + D+T+ +LK RK I E++R MV
Sbjct: 2 KKRVVTAGTFDILHPGHYEILKFAKSLGDELIVIVARDETVKKLKGRKPIIPEEQRREMV 61
Query: 62 RALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSDGHTPAKERLCQELG 112
ALK V +A + S + + +E + L+PDI + D T +E L +EL
Sbjct: 62 EALKPVDKAILGS---LKNKLEPILELKPDIIVLGPDQTTFDEETLKKELA 109
>gi|34763835|ref|ZP_00144744.1| D-glycero-D-manno-heptose-1-phosphate adenylyltransferase
[Fusobacterium nucleatum subsp. vincentii ATCC 49256]
gi|27886391|gb|EAA23657.1| D-glycero-D-manno-heptose-1-phosphate adenylyltransferase
[Fusobacterium nucleatum subsp. vincentii ATCC 49256]
Length = 154
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKAR-KTIHTEDERLY 59
GKK VF +GC+D+LH GHV + EA GD L VG+ SDK++ +LK + I++E++R +
Sbjct: 19 GKKVVFTNGCFDILHIGHVTYLNEAKRQGDILIVGVNSDKSVKKLKGETRPINSENDRAF 78
Query: 60 MVRALKSV 67
++ LK+V
Sbjct: 79 VLDGLKAV 86
>gi|95929366|ref|ZP_01312109.1| RfaE bifunctional protein, domain I [Desulfuromonas acetoxidans DSM
684]
gi|95134482|gb|EAT16138.1| RfaE bifunctional protein, domain I [Desulfuromonas acetoxidans DSM
684]
Length = 487
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 42/109 (38%), Positives = 65/109 (59%), Gaps = 18/109 (16%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELK--ARKTIHTEDERL 58
GKK VF +GC+D+LH+GHV++ + A GD L VG+ +D+++ LK +R +H ED R
Sbjct: 351 GKKVVFTNGCFDLLHAGHVSYLQRARDLGDVLVVGLNTDQSVQRLKGPSRPLVHEED-RA 409
Query: 59 YMVRALKSVKEAWVNSGSGVLDFVED-----LKRLQPDIFFVNSDGHTP 102
+++ AL V S V+ F ED +K L+PD+ +D +TP
Sbjct: 410 FVMAALACV--------SYVVLFEEDTPLELIKLLRPDVLVKGAD-YTP 449
>gi|126465115|ref|YP_001040224.1| cytidyltransferase-related domain [Staphylothermus marinus F1]
gi|126013938|gb|ABN69316.1| cytidyltransferase-related domain [Staphylothermus marinus F1]
Length = 236
Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 38/121 (31%), Positives = 68/121 (56%), Gaps = 4/121 (3%)
Query: 1 MGKKKVFVSGCYDMLHSGHVAFFEEAATHGDLYVGIGSDKTIHELKARKTIHTEDERLYM 60
+ + KV V+G ++++H GH+ F++A G +YV + DK + K R+ + E++RL +
Sbjct: 91 LNRPKVLVAGGFEIIHPGHIYLFKKAWEKGRVYVVVARDKNFKKFKKREPVIPENQRLKV 150
Query: 61 VRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSDGHTPAKERLCQELGIRYIVSQR 120
V +K V +A + L VE++K PDI + D P +E+L +EL R + S +
Sbjct: 151 VENIKYVYKAVLGDEHDYLKPVENIK---PDIILLGPD-QWPQEEKLKKELEARGLSSVK 206
Query: 121 I 121
+
Sbjct: 207 V 207
>gi|20094016|ref|NP_613863.1| Cytidylyltransferase [Methanopyrus kandleri AV19]
gi|19886987|gb|AAM01793.1| Cytidylyltransferase [Methanopyrus kandleri AV19]
Length = 150
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 10/142 (7%)
Query: 4 KKVFVSGCYDMLHSGHVAFFEE----AATHGDLYVGIGSDKTIHELKARKTIHTEDERLY 59
K+V G +D+LH GHVAF EE A +G+L V + D+T+ LK R I E++R+
Sbjct: 3 KRVLAGGVFDILHPGHVAFLEEARKIAGKNGELVVVVARDETVRRLK-RTPIVPEEQRVR 61
Query: 60 MVRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSDGHTPAK--ERLCQELGIRYIV 117
MV ALK V A + DF LK ++PD+ + D K ER + G+ V
Sbjct: 62 MVSALKPVDRAILGHPR---DFSITLKTVKPDVVVLGPDQDIDEKEVERWAERAGVDCEV 118
Query: 118 SQRIPHGGLPVRSTTALRKECL 139
+ + P+ ST + K +
Sbjct: 119 RRIEKYERCPLDSTIKIVKRVI 140
>gi|124026962|ref|YP_001012282.1| cytidylyl transferase, TagD [Hyperthermus butylicus DSM 5456]
gi|123977656|gb|ABM79937.1| cytidylyl transferase, TagD [Hyperthermus butylicus DSM 5456]
Length = 241
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 3 KKKVFVSGCYDMLHSGHVAFFEEAATHGDLYVGIGSDKTIHELKARKTIHTEDERLYMVR 62
+ KV V+G +D++H GH+ EA G +YV + D+T+ + K R + E++RL +V
Sbjct: 95 RPKVLVAGTFDIIHPGHITLLREAWLRGRVYVVVARDETVKKFKGRPPVVPEEQRLSVVG 154
Query: 63 ALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSD 98
A++ V +A + S VL E L ++PDI + D
Sbjct: 155 AMRYVYKAMLGSRRDVL---EPLLEVKPDIVLLGPD 187
>gi|57642209|ref|YP_184687.1| glycerol-3-phosphate cytidylyltransferase [Thermococcus
kodakarensis KOD1]
gi|57160533|dbj|BAD86463.1| glycerol-3-phosphate cytidylyltransferase [Thermococcus
kodakarensis KOD1]
Length = 149
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 72/124 (58%), Gaps = 6/124 (4%)
Query: 3 KKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKARKTIHTEDERLYMV 61
K +V V G +D+LH GH+ F ++A GD L V + D+T+ K R+ I+ ++R ++
Sbjct: 7 KIRVLVGGVFDILHVGHIHFLKQAKELGDELVVIVAHDETVRMQKRREPINPAEDRAELL 66
Query: 62 RALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSDGHTPAKERLCQELGIRYIVSQ-- 119
RA++ V E ++ + G +D +E +KR+ PD+ + D E+L +EL I ++
Sbjct: 67 RAIRYVDEVYIGT-PGTID-MELVKRIDPDVIAIGPDQFFNC-EKLKEELRKHGINAEVI 123
Query: 120 RIPH 123
RIP+
Sbjct: 124 RIPY 127
>gi|150401726|ref|YP_001325492.1| cytidyltransferase-related domain [Methanococcus aeolicus Nankai-3]
gi|150014429|gb|ABR56880.1| cytidyltransferase-related domain [Methanococcus aeolicus Nankai-3]
Length = 156
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 4/110 (3%)
Query: 3 KKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKARKTIHTEDERLYMV 61
KK V +G +D+LH GH + A + GD L V I D+T+ ++K RK + E++R M+
Sbjct: 8 KKIVLTAGTFDLLHPGHHNTLKYAKSLGDELIVVIARDETVKKIKGRKPVIPENQRREMI 67
Query: 62 RALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSDGHTPAKERLCQEL 111
A+K V +A + S + D +E + +++PDI + D T E L EL
Sbjct: 68 EAIKPVDKAILGS---LTDKLEPILKIKPDIIVLGPDQITFDAENLKNEL 114
>gi|147921759|ref|YP_684419.1| glycerol-3-phosphate cytidyltransferase [uncultured methanogenic
archaeon RC-I]
gi|110619815|emb|CAJ35093.1| glycerol-3-phosphate cytidyltransferase [uncultured methanogenic
archaeon RC-I]
Length = 140
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 74/137 (54%), Gaps = 8/137 (5%)
Query: 4 KKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKARKTIHTEDERLYMVR 62
++V +G +D+LH GHV + EA HGD L+V + + TI RK + E++RL+MV+
Sbjct: 3 RRVVATGTFDILHPGHVLYLCEARKHGDELWVIVARESTIKH--KRKPLIPEEQRLFMVQ 60
Query: 63 ALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSDGHTPAKE--RLCQELGIRYIVSQR 120
+LK V A + S + D E ++++QP++ + + H E + E GI+ + +
Sbjct: 61 SLKCVDHAVLGSET---DMFEPIRQIQPEVIAIGFNQHWNENELKKQLAERGIKAEIVRI 117
Query: 121 IPHGGLPVRSTTALRKE 137
P S+ +R++
Sbjct: 118 QTSDHSPYASSRTIRQK 134
>gi|73669580|ref|YP_305595.1| glycerol-3-phosphate cytidyltransferase [Methanosarcina barkeri
str. Fusaro]
gi|72396742|gb|AAZ71015.1| glycerol-3-phosphate cytidyltransferase [Methanosarcina barkeri
str. Fusaro]
Length = 139
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 50/142 (35%), Positives = 73/142 (51%), Gaps = 10/142 (7%)
Query: 5 KVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKARKTIHTEDERLYMVRA 63
++ +G +D+LH GH+ F +A GD L+V + D + K I +E++RL MV A
Sbjct: 3 RILATGTFDLLHPGHIYFLTQARALGDELFVIVARDSNVTH--KPKPIVSEEQRLEMVNA 60
Query: 64 LKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSDGHTPAKERLCQELGIRYIVSQ--RI 121
L V +A + S D E LK ++PDI + D A E L +EL R + + RI
Sbjct: 61 LGIVDKALLGSEK---DMFEPLKHIRPDIIALGYDQRFNA-ENLEEELAKRGLPANVVRI 116
Query: 122 P-HGGLPVRSTTALRKECLIPY 142
P P+ ST A+ KE L Y
Sbjct: 117 PLSKECPLCSTGAIIKEVLKRY 138
>gi|152988346|ref|YP_001351050.1| LPS biosynthesis protein RfaE [Pseudomonas aeruginosa PA7]
gi|150963504|gb|ABR85529.1| LPS biosynthesis protein RfaE [Pseudomonas aeruginosa PA7]
Length = 474
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 15/104 (14%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELK-ARKTIHTEDERLY 59
G+K VF +GC+D+LH+GHV + E+A GD L VG+ D ++ LK A + I++ D R+
Sbjct: 338 GEKIVFTNGCFDILHAGHVTYLEQARAQGDRLIVGVNDDASVTRLKGAGRPINSVDRRMA 397
Query: 60 MVRALKSVKEAWVNSGSGVLDFVED-----LKRLQPDIFFVNSD 98
++ L +V WV S F ED L++++PD+ D
Sbjct: 398 VLAGLGAVD--WVVS------FAEDTPERLLEQVRPDVLVKGGD 433
>gi|146305632|ref|YP_001186097.1| rfaE bifunctional protein [Pseudomonas mendocina ymp]
gi|145573833|gb|ABP83365.1| rfaE bifunctional protein [Pseudomonas mendocina ymp]
Length = 473
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 15/104 (14%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKAR-KTIHTEDERLY 59
G+K VF +GC+D+LH+GHV + E+A GD L V I D ++ LK + I+ D R+
Sbjct: 338 GEKIVFTNGCFDILHAGHVTYLEQARAQGDRLIVAINDDASVSRLKGPGRPINAVDRRMA 397
Query: 60 MVRALKSVKEAWVNSGSGVLDFVED-----LKRLQPDIFFVNSD 98
++ L +V WV S F ED LK++QPD+ D
Sbjct: 398 VLAGLGAVD--WVVS------FAEDTPERLLKQVQPDVLVKGGD 433
>gi|20090671|ref|NP_616746.1| glycerol-3-phosphate cytidyltransferase [Methanosarcina acetivorans
C2A]
gi|19915719|gb|AAM05226.1| glycerol-3-phosphate cytidyltransferase [Methanosarcina acetivorans
C2A]
Length = 151
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 51/142 (35%), Positives = 73/142 (51%), Gaps = 10/142 (7%)
Query: 5 KVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKARKTIHTEDERLYMVRA 63
+V +G +D+LH GHV F +A GD L+V I D + K I E++RL MV A
Sbjct: 15 RVLATGTFDILHPGHVYFLTQARALGDELFVIIARDSNVTH--KPKPIVPEEQRLEMVNA 72
Query: 64 LKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSDGHTPAKERLCQELGIRYIVSQ--RI 121
L +V +A + S D E LK ++PDI + D H E L +EL R + ++ R+
Sbjct: 73 LGTVDKALLGSEK---DMFEPLKEIRPDIIVLGYDQHFDI-ELLEEELTKRGLPAKVVRV 128
Query: 122 P-HGGLPVRSTTALRKECLIPY 142
P P+ ST A+ K L Y
Sbjct: 129 PLSKECPLCSTGAIIKAVLKRY 150
>gi|148642919|ref|YP_001273432.1| glycerol-3-phosphate cytidylyltransferase [Methanobrevibacter
smithii ATCC 35061]
gi|148551936|gb|ABQ87064.1| glycerol-3-phosphate cytidylyltransferase [Methanobrevibacter
smithii ATCC 35061]
Length = 153
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 7/99 (7%)
Query: 4 KKVFVSGCYDMLHSGHVAFFEEAATHG----DLYVGIGSDKTIHELKARKTIHTEDERLY 59
KKV +G +D+LH GH + EA G LYV I D T+ E + R I E +RL
Sbjct: 2 KKVMATGTFDLLHPGHGIYLNEAKKLGGEDAKLYVVIARDSTV-EKRKRYPIVGEQQRLE 60
Query: 60 MVRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSD 98
+++ +K V EA++ + +G DF++ ++ + PDI + +D
Sbjct: 61 LIKMIKGVDEAYLGNENG--DFLKIVEEINPDIIAIGAD 97
>gi|67939354|ref|ZP_00531858.1| Cytidyltransferase-related [Chlorobium phaeobacteroides BS1]
gi|67914416|gb|EAM63760.1| Cytidyltransferase-related [Chlorobium phaeobacteroides BS1]
Length = 162
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 39/104 (37%), Positives = 58/104 (55%), Gaps = 15/104 (14%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKARK-TIHTEDERLY 59
GKK VF +GC+D+LH+GHV + E+A GD L VG+ SD ++ LK +K + T ER
Sbjct: 24 GKKTVFTNGCFDILHAGHVRYLEKAKAAGDTLIVGLNSDTSVERLKGKKRPVVTVAERCA 83
Query: 60 MVRALKSVKEAWVNSGSGVLDFVED-----LKRLQPDIFFVNSD 98
++ L++V V+ F ED + +L PDI +D
Sbjct: 84 VLSGLEAV--------DAVVIFEEDTPEEIIAKLLPDILVKGAD 119
>gi|156718936|ref|ZP_02060590.1| rfaE bifunctional protein [Hydrogenobaculum sp. Y04AAS1]
gi|156710783|gb|EDO51138.1| rfaE bifunctional protein [Hydrogenobaculum sp. Y04AAS1]
Length = 158
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 59/103 (57%), Gaps = 15/103 (14%)
Query: 3 KKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKA-RKTIHTEDERLYM 60
KK VF +GC+D++H+GHV + A T+GD L VG+ SD +I +K ++ I +++R Y+
Sbjct: 20 KKIVFTNGCFDIIHAGHVKYLNIAKTYGDILIVGLNSDNSIKRIKGDKRPIVPQEQRAYV 79
Query: 61 VRALKSVKEAWVNSGSGVLDFVED-----LKRLQPDIFFVNSD 98
+ LK V V+ F ED +K ++PD+ +D
Sbjct: 80 LSQLKPVDM--------VVIFEEDTPYNLIKAIKPDVLIKGAD 114
>gi|148265239|ref|YP_001231945.1| rfaE bifunctional protein [Geobacter uraniumreducens Rf4]
gi|146398739|gb|ABQ27372.1| rfaE bifunctional protein [Geobacter uraniumreducens Rf4]
Length = 490
Score = 62.0 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 6/105 (5%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGDLY-VGIGSDKTIHELK-ARKTIHTEDERLY 59
GK+ VF +GC+D+LH GHV + ++A T GDL VG+ SD ++ LK A + + E ER +
Sbjct: 351 GKRLVFTNGCFDLLHVGHVKYLQKARTFGDLLVVGLNSDASVRRLKGAERPLIGEAERAH 410
Query: 60 MVRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSDGHTPAK 104
++ AL V + L +E LQP + D +TP +
Sbjct: 411 ILAALDCVDFVVIFDEDTPLRLIET---LQPQVLVKGGD-YTPER 451
>gi|118475685|ref|YP_892552.1| bifunctional protein HldE [Campylobacter fetus subsp. fetus 82-40]
gi|150383466|sp|A0RQR9|HLDE_CAMFF Bifunctional protein hldE [Includes: D-beta-D-heptose 7-phosphate
kinase (D-beta-D-heptose 7-phosphotransferase);
D-beta-D-heptose 1-phosphate adenosyltransferase ]
gi|118414911|gb|ABK83331.1| bifunctional protein HldE [Campylobacter fetus subsp. fetus 82-40]
Length = 458
Score = 61.6 bits (148), Expect = 7e-08, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKA-RKTIHTEDERLY 59
GK VF +GC+D+LH GH+++ + A GD L VG+ SD+++ ELK + ++ + +R
Sbjct: 328 GKTMVFTNGCFDILHFGHISYLQSAKKIGDMLVVGLNSDRSVKELKGDNRPVNAQSDRAS 387
Query: 60 MVRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSD 98
M+ AL+ V + L+ + K L+PDI +D
Sbjct: 388 MLAALEFVDFVVIFDEDTPLNLI---KTLKPDILVKGAD 423
>gi|15600189|ref|NP_253683.1| LPS biosynthesis protein RfaE [Pseudomonas aeruginosa PAO1]
gi|84317760|ref|ZP_00966198.1| COG2870: ADP-heptose synthase, bifunctional sugar
kinase/adenylyltransferase [Pseudomonas aeruginosa
C3719]
gi|84323658|ref|ZP_00971726.1| COG2870: ADP-heptose synthase, bifunctional sugar
kinase/adenylyltransferase [Pseudomonas aeruginosa 2192]
gi|107104096|ref|ZP_01368014.1| hypothetical protein PaerPA_01005169 [Pseudomonas aeruginosa PACS2]
gi|54036086|sp|Q9HUG9|HLDE_PSEAE Bifunctional protein hldE [Includes: D-beta-D-heptose 7-phosphate
kinase (D-beta-D-heptose 7-phosphotransferase);
D-beta-D-heptose 1-phosphate adenosyltransferase ]
gi|9951281|gb|AAG08381.1|AE004912_7 LPS biosynthesis protein RfaE [Pseudomonas aeruginosa PAO1]
gi|126170223|gb|EAZ55734.1| LPS biosynthesis protein RfaE [Pseudomonas aeruginosa C3719]
gi|126197496|gb|EAZ61559.1| LPS biosynthesis protein RfaE [Pseudomonas aeruginosa 2192]
Length = 474
Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 15/104 (14%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKA-RKTIHTEDERLY 59
G+K VF +GC+D+LH+GHV + E+A GD L VG+ D ++ LK + I++ D R+
Sbjct: 338 GEKIVFTNGCFDILHAGHVTYLEQARAQGDRLIVGVNDDASVTRLKGVGRPINSVDRRMA 397
Query: 60 MVRALKSVKEAWVNSGSGVLDFVED-----LKRLQPDIFFVNSD 98
++ L +V WV S F ED L++++PD+ D
Sbjct: 398 VLAGLGAVD--WVVS------FAEDTPERLLEQVRPDVLVKGGD 433
>gi|116053144|ref|YP_793465.1| lipopolysaccharide biosynthesis protein RfaE [Pseudomonas
aeruginosa UCBPP-PA14]
gi|122256841|sp|Q02F21|HLDE_PSEAB Bifunctional protein hldE [Includes: D-beta-D-heptose 7-phosphate
kinase (D-beta-D-heptose 7-phosphotransferase);
D-beta-D-heptose 1-phosphate adenosyltransferase ]
gi|115588365|gb|ABJ14380.1| lipopolysaccharide biosynthesis protein RfaE [Pseudomonas
aeruginosa UCBPP-PA14]
Length = 474
Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 15/104 (14%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKA-RKTIHTEDERLY 59
G+K VF +GC+D+LH+GHV + E+A GD L VG+ D ++ LK + I++ D R+
Sbjct: 338 GEKIVFTNGCFDILHAGHVTYLEQARAQGDRLIVGVNDDASVTRLKGVGRPINSVDRRMA 397
Query: 60 MVRALKSVKEAWVNSGSGVLDFVED-----LKRLQPDIFFVNSD 98
++ L +V WV S F ED L++++PD+ D
Sbjct: 398 VLAGLGAVD--WVVS------FAEDTPERLLEQVRPDVLVKGGD 433
>gi|67158052|ref|ZP_00419142.1| Cytidyltransferase-related domain [Azotobacter vinelandii AvOP]
gi|67085035|gb|EAM04512.1| Cytidyltransferase-related domain [Azotobacter vinelandii AvOP]
Length = 474
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 15/104 (14%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKAR-KTIHTEDERLY 59
G+K VF +GC+D+LH+GHV + E+A GD L V + D ++ LK + I+T D R+
Sbjct: 338 GEKIVFTNGCFDILHAGHVTYLEQARAQGDRLIVAVNDDASVTRLKGPGRPINTVDRRMA 397
Query: 60 MVRALKSVKEAWVNSGSGVLDFVED-----LKRLQPDIFFVNSD 98
++ L +V W V+ F ED L++++PD+ D
Sbjct: 398 VLAGLGAVD--W------VISFAEDTPERLLEQIRPDVLVKGGD 433
>gi|110600402|ref|ZP_01388623.1| Cytidyltransferase-related:RfaE bifunctional protein, domain I:RfaE
bifunctional protein, domain II [Geobacter sp. FRC-32]
gi|110548879|gb|EAT62084.1| Cytidyltransferase-related:RfaE bifunctional protein, domain I:RfaE
bifunctional protein, domain II [Geobacter sp. FRC-32]
Length = 487
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 6/105 (5%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGDLY-VGIGSDKTIHELKAR-KTIHTEDERLY 59
GK+ VF +GC+D+LH GHV + ++A T GDL VG+ SD ++ LK + + E ER +
Sbjct: 351 GKRVVFTNGCFDLLHVGHVKYLQKARTFGDLLIVGLNSDASVRALKGETRPLIVETERAH 410
Query: 60 MVRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSDGHTPAK 104
++ AL V + L +E LQP + V +TP +
Sbjct: 411 ILAALDCVDYVVIFDEETPLKLIE---ALQP-LVLVKGGDYTPER 451
>gi|48478082|ref|YP_023788.1| glycerol-3-phosphate cytidylyltransferase [Picrophilus torridus DSM
9790]
gi|48430730|gb|AAT43595.1| glycerol-3-phosphate cytidylyltransferase [Picrophilus torridus DSM
9790]
Length = 139
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 8/141 (5%)
Query: 5 KVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKARKTIHTEDERLYMVRA 63
K+ +G +D+LH GH+ + E+ GD L V I +DKT +K I E++R +MV
Sbjct: 2 KIMATGVFDILHPGHIHYLSESKKLGDYLIVIIATDKTAGS-HGKKLIFNEEQRRFMVSQ 60
Query: 64 LKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSDGH--TPAKERLCQELGIRYIVSQRI 121
L+ V EA + D + + ++PDI + D H E+ C++LG+ V +
Sbjct: 61 LRMVDEAIIGHED---DIFKTVYEVRPDIITLGYDQHFNDSEIEKKCRDLGLNTRVVRIS 117
Query: 122 PHGGLPVRSTTALRKECLIPY 142
+ G ++S++ +R+ + Y
Sbjct: 118 KYDG-EIKSSSDIRRRIIELY 137
>gi|82702915|ref|YP_412481.1| RfaE bifunctional protein, domain II [Nitrosospira multiformis ATCC
25196]
gi|82410980|gb|ABB75089.1| RfaE bifunctional protein, domain II [Nitrosospira multiformis ATCC
25196]
Length = 491
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 15/104 (14%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGDLYV-GIGSDKTIHELK-ARKTIHTEDERLY 59
GK+ VF +GC+D+LHSGHV++ E+A GD+ V G+ SD +I LK + + I+ ER+
Sbjct: 351 GKRIVFTNGCFDLLHSGHVSYLEQARALGDVLVLGLNSDASIKRLKGSNRPINNLYERIR 410
Query: 60 MVRALKSVKEAWVNSGSGVLDFVED-----LKRLQPDIFFVNSD 98
++ L+SV + + F ED L+ +QP ++ D
Sbjct: 411 ILSGLESV--------TLMTSFEEDTPVNLLEVIQPSLYVKGGD 446
>gi|126008772|ref|ZP_01709343.1| hypothetical protein Faci_03000447 [Ferroplasma acidarmanus fer1]
Length = 139
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 9/139 (6%)
Query: 5 KVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKARKTIHTEDERLYMVRA 63
KV SG +D+LH GHV + E+ + GD L V I SD T + ++ + E+ER +V
Sbjct: 3 KVMASGVFDILHLGHVHYLRESKSFGDYLVVVIASDYTAQK-HGKELVFNENERSALVSE 61
Query: 64 LKSVKEAWV-NSGSGVLDFVEDLKRLQPDIFFVNSDGHTPAK--ERLCQELGIRYIVSQR 120
LK V E V +S + V +LK PDI + D E C++LG+ V +
Sbjct: 62 LKMVDEVMVGHSDDNIFKTVAELK---PDIITLGYDQKFDDSYIETECKKLGLNTKVRRT 118
Query: 121 IPHGGLPVRSTTALRKECL 139
P+ G + S++ +R++ L
Sbjct: 119 SPYDG-TINSSSKIRQKIL 136
>gi|77918886|ref|YP_356701.1| putative ADP-heptose synthase [Pelobacter carbinolicus DSM 2380]
gi|119365070|sp|Q3A526|HLDE_PELCD Bifunctional protein hldE [Includes: D-beta-D-heptose 7-phosphate
kinase (D-beta-D-heptose 7-phosphotransferase);
D-beta-D-heptose 1-phosphate adenosyltransferase ]
gi|77544969|gb|ABA88531.1| putative ADP-heptose synthase [Pelobacter carbinolicus DSM 2380]
Length = 490
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGDLYV-GIGSDKTIHELKA-RKTIHTEDERLY 59
GK VF +GC+D+LH GHV + ++A GDL V G+ SD +I LK + + +E ER +
Sbjct: 351 GKTVVFTNGCFDLLHVGHVKYLQKARRLGDLLVLGLNSDASIRRLKGPSRPLISEQERAH 410
Query: 60 MVRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSDGHTP 102
++ AL + V L+ ++ L+ PDI D +TP
Sbjct: 411 ILAALSCIDYVVVFDEDTPLELIDTLR---PDILVKGGD-YTP 449
>gi|42524647|ref|NP_970027.1| ADP-heptose synthase [Bdellovibrio bacteriovorus HD100]
gi|39576857|emb|CAE78086.1| ADP-heptose synthase [Bdellovibrio bacteriovorus HD100]
Length = 155
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 15/104 (14%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGDLY-VGIGSDKTIHELKA-RKTIHTEDERLY 59
GKK VF +GC+D+LH GHV + +EA GDL VG+ SD ++ LK + + E +R
Sbjct: 21 GKKIVFTNGCFDLLHVGHVRYLQEAQKLGDLLVVGVNSDASVKRLKGPTRPVQIEADRAE 80
Query: 60 MVRALKSVKEAWVNSGSGVLDFVED-----LKRLQPDIFFVNSD 98
++ AL +V + F ED + +++PDI D
Sbjct: 81 ILAALNAVDFTVI--------FTEDTPENLIHKVRPDILVKGGD 116
>gi|39997183|ref|NP_953134.1| ADP-heptose synthase [Geobacter sulfurreducens PCA]
gi|54036013|sp|Q74BF6|HLDE_GEOSL Bifunctional protein hldE [Includes: D-beta-D-heptose 7-phosphate
kinase (D-beta-D-heptose 7-phosphotransferase);
D-beta-D-heptose 1-phosphate adenosyltransferase ]
gi|39984073|gb|AAR35461.1| ADP-heptose synthase [Geobacter sulfurreducens PCA]
Length = 490
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGDLYV-GIGSDKTIHELKARK-TIHTEDERLY 59
GK+ VF +GC+D+LH GHV + ++A + GDL V G+ SD +I LK K + ++ER +
Sbjct: 351 GKRVVFTNGCFDLLHVGHVKYLQKARSFGDLLVLGLNSDASIRRLKGEKRPLIGQEERAH 410
Query: 60 MVRALKSVKEAWVNSGSGVLDFVEDLK 86
++ AL + V L+ +E L+
Sbjct: 411 ILAALDCIDYVVVFDEDTPLNLIETLR 437
>gi|94970814|ref|YP_592862.1| RfaE bifunctional protein, domain II [Acidobacteria bacterium
Ellin345]
gi|94552864|gb|ABF42788.1| RfaE bifunctional protein, domain II [Acidobacteria bacterium
Ellin345]
Length = 223
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKAR-KTIHTEDERLY 59
G VF +GC+D+LH GHV EEA G L V I SDK++ +LK + + E ER
Sbjct: 86 GDHIVFTNGCFDLLHVGHVTLLEEARRLGTRLIVAINSDKSVSKLKGESRPLVGEKERAK 145
Query: 60 MVRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSD 98
++ AL SV + S L E +K LQPD+ D
Sbjct: 146 LLAALASVDAVTIFDESTPL---ECIKALQPDVLVKGGD 181
>gi|88858455|ref|ZP_01133097.1| bifunctional ADP-L-glycero-D-manno-heptose synthase: putaive kinase
(N-terminal); putative sugar nucleotide transferase
[Pseudoalteromonas tunicata D2]
gi|88820072|gb|EAR29885.1| bifunctional ADP-L-glycero-D-manno-heptose synthase: putaive kinase
(N-terminal); putative sugar nucleotide transferase
[Pseudoalteromonas tunicata D2]
Length = 481
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/73 (45%), Positives = 48/73 (65%), Gaps = 4/73 (5%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELK-ARKTIHTEDERLY 59
G+ VF +GC+D+LH+GHV + +A GD L VG+ +D++I LK A + I+ DER
Sbjct: 341 GETIVFTNGCFDILHAGHVRYLAQAKAMGDRLVVGLNNDESIARLKGADRPINPLDERAM 400
Query: 60 MVRALKSVKEAWV 72
++ ALKSV WV
Sbjct: 401 VLSALKSVD--WV 411
>gi|78222142|ref|YP_383889.1| RfaE bifunctional protein, domains I & II [Geobacter
metallireducens GS-15]
gi|119365065|sp|Q39X60|HLDE_GEOMG Bifunctional protein hldE [Includes: D-beta-D-heptose 7-phosphate
kinase (D-beta-D-heptose 7-phosphotransferase);
D-beta-D-heptose 1-phosphate adenosyltransferase ]
gi|78193397|gb|ABB31164.1| RfaE bifunctional protein, domains I & II [Geobacter
metallireducens GS-15]
Length = 490
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGDLYV-GIGSDKTIHELKARK-TIHTEDERLY 59
GKK VF +GC+D+LH GHV + ++A ++GD+ V G+ SD ++ LK K + E ER +
Sbjct: 351 GKKIVFTNGCFDLLHVGHVKYLQKAKSYGDVLVLGLNSDASVRRLKGEKRPLIDEAERAH 410
Query: 60 MVRALKSVKEAWVNSGSGVLDFVEDLK 86
++ AL + + L +E LK
Sbjct: 411 ILAALDCIDYVVIFDEDTPLRLIETLK 437
>gi|108563266|ref|YP_627582.1| ADP-heptose synthase [Helicobacter pylori HPAG1]
gi|118573569|sp|Q1CT14|HLDE_HELPH Bifunctional protein hldE [Includes: D-beta-D-heptose 7-phosphate
kinase (D-beta-D-heptose 7-phosphotransferase);
D-beta-D-heptose 1-phosphate adenosyltransferase ]
gi|107837039|gb|ABF84908.1| ADP-heptose synthase [Helicobacter pylori HPAG1]
Length = 463
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 3 KKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKA-RKTIHTEDERLYM 60
+K VF +GC+D+LH GH ++ ++A GD L VG+ SD +I LK ++ I +E +R ++
Sbjct: 330 QKIVFTNGCFDLLHKGHASYLQKAKALGDILVVGLNSDNSIKRLKGNKRPIVSEKDRAFL 389
Query: 61 VRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSD 98
+ +L V V + ++ LK PDI +D
Sbjct: 390 LASLSCVDYVVVFEEDAPIKLIQALK---PDILVKGAD 424
>gi|21226344|ref|NP_632266.1| Glycerol-3-phosphate cytidylyltransferase [Methanosarcina mazei
Go1]
gi|20904594|gb|AAM29938.1| Glycerol-3-phosphate cytidylyltransferase [Methanosarcina mazei
Go1]
Length = 151
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 50/142 (35%), Positives = 73/142 (51%), Gaps = 10/142 (7%)
Query: 5 KVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKARKTIHTEDERLYMVRA 63
+V +G +D+LH GHV F +A GD L+V I D + K + E++RL MV A
Sbjct: 15 RVLATGTFDILHPGHVYFLAQAKALGDELFVIIARDSNVTH--KPKPVIPEEQRLEMVDA 72
Query: 64 LKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSDGHTPAKERLCQELGIRYIVSQ--RI 121
LK+V +A + S D E L+ ++PDI + D E L +EL R + ++ RI
Sbjct: 73 LKAVNKAILGSEK---DMFEPLREIKPDIIALGYDQRFDT-EILEKELTKRGLPAKVVRI 128
Query: 122 P-HGGLPVRSTTALRKECLIPY 142
P P+ ST + KE L Y
Sbjct: 129 PLSKECPLCSTGTIIKEVLKRY 150
>gi|91775122|ref|YP_544878.1| RfaE bifunctional protein, domain I [Methylobacillus flagellatus
KT]
gi|118573570|sp|Q1H3A0|HLDE_METFK Bifunctional protein hldE [Includes: D-beta-D-heptose 7-phosphate
kinase (D-beta-D-heptose 7-phosphotransferase);
D-beta-D-heptose 1-phosphate adenosyltransferase ]
gi|91709109|gb|ABE49037.1| RfaE bifunctional protein, domain I [Methylobacillus flagellatus
KT]
Length = 488
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 7/100 (7%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELK--ARKTIHTEDERL 58
G++ VF +GC+D+LH+GHV + E A GD L +G+ +D+++ LK +R IH +D R
Sbjct: 354 GERIVFTNGCFDLLHAGHVTYLEAARNTGDRLVLGLNTDRSVSALKGPSRPVIHEQD-RA 412
Query: 59 YMVRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSD 98
++ AL+SV + +D + ++ PD+ SD
Sbjct: 413 RVLAALESVDAVILFDEDTPIDLINAIR---PDVIAKGSD 449
>gi|118755147|ref|ZP_01602939.1| rfaE bifunctional protein [Shewanella pealeana ATCC 700345]
gi|118693344|gb|EAV99568.1| rfaE bifunctional protein [Shewanella pealeana ATCC 700345]
Length = 482
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/104 (33%), Positives = 59/104 (56%), Gaps = 15/104 (14%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKAR-KTIHTEDERLY 59
G++ V +GC+D+LH+GHV++ ++A GD L V + +D ++ LK + +++ED R+
Sbjct: 346 GERVVMTNGCFDILHAGHVSYLQQARALGDRLIVAVNTDASVKRLKGEGRPVNSEDRRMT 405
Query: 60 MVRALKSVKEAWVNSGSGVLDFVED-----LKRLQPDIFFVNSD 98
++ AL SV W V+ F ED + RL PD+ D
Sbjct: 406 VLAALASVD--W------VVPFSEDTPQRIISRLLPDLLVKGGD 441
>gi|67479235|ref|XP_654999.1| cytidylyltransferase [Entamoeba histolytica HM-1:IMSS]
Length = 168
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGDLYVGIGSDKTIHELKARKTIHTEDERLYMV 61
G +V ++G +D++H GH+ F +EAA G + V I D + +K R+T+ E R +V
Sbjct: 22 GPYEVMIAGTFDLIHPGHIHFIQEAAQFGRVIVIIARDSVVKRIKQRETVLDEKMRQSIV 81
Query: 62 RALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFV--NSDGHTPAKERLCQELGIRYI 116
+K V E + +G ++ E + + P +F + N G E++ E G R I
Sbjct: 82 EGIKGVSEVVLGCENG--NWYEPILKRNPHLFLMGFNQPGDLFRFEKVIHEKGGRTI 136
>gi|118581990|ref|YP_903240.1| rfaE bifunctional protein [Pelobacter propionicus DSM 2379]
gi|150383472|sp|A1AV12|HLDE_PELPD Bifunctional protein hldE [Includes: D-beta-D-heptose 7-phosphate
kinase (D-beta-D-heptose 7-phosphotransferase);
D-beta-D-heptose 1-phosphate adenosyltransferase ]
gi|118504700|gb|ABL01183.1| rfaE bifunctional protein [Pelobacter propionicus DSM 2379]
Length = 488
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGDLYV-GIGSDKTIHELKARK-TIHTEDERLY 59
GK+ VF +GC+D+LH+GHV + ++A T GDL V G+ SD ++ LK K + E ER +
Sbjct: 351 GKRIVFTNGCFDLLHAGHVKYLQKARTLGDLLVLGLNSDASVRRLKGEKRPLIGEQERAH 410
Query: 60 MVRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSDGHTP 102
++ AL + + L+ + LK P I D +TP
Sbjct: 411 ILAALDCIDYVVIFEEDTPLELIAALK---PHILAKGGD-YTP 449
>gi|116749120|ref|YP_845807.1| cytidyltransferase-related domain [Syntrophobacter fumaroxidans
MPOB]
gi|116698184|gb|ABK17372.1| cytidyltransferase-related domain [Syntrophobacter fumaroxidans
MPOB]
Length = 169
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKA-RKTIHTEDERLY 59
G++ VF +GC+D+LH GHV + EEA + GD L VG+ +D+++ E+K R+ + + ER
Sbjct: 24 GRRIVFTNGCFDLLHLGHVRYLEEARSLGDVLIVGVNTDRSVSEIKGPRRPVTGQAERSE 83
Query: 60 MVRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSD 98
++ AL+ V + L + L+PD+ +D
Sbjct: 84 VLAALQCVDHVVLFDTPDPLPLI---VALEPDVLVKGAD 119
>gi|78776779|ref|YP_393094.1| RfaE bifunctional protein, domains I and II [Thiomicrospira
denitrificans ATCC 33889]
gi|119365082|sp|Q30T22|HLDE_THIDN Bifunctional protein hldE [Includes: D-beta-D-heptose 7-phosphate
kinase (D-beta-D-heptose 7-phosphotransferase);
D-beta-D-heptose 1-phosphate adenosyltransferase ]
gi|78497319|gb|ABB43859.1| RfaE bifunctional protein, domains I and II [Thiomicrospira
denitrificans ATCC 33889]
Length = 477
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 17/119 (14%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKA-RKTIHTEDERLY 59
GKK VF +GC+D+LH GHV + + A + GD L VG+ SD ++ LK + ++ ++R Y
Sbjct: 343 GKKVVFTNGCFDILHVGHVKYLQIAKSFGDVLIVGLNSDTSVTRLKGPSRPVNIAEDRAY 402
Query: 60 MVRALKSVKEAWVNSGSGVLDFVED-----LKRLQPDIFFVNSD--GHTPAKERLCQEL 111
++ AL++V V+ F +D +K ++PD D G + QEL
Sbjct: 403 LLAALEAV--------DFVVPFEDDTPYELIKMIKPDTLVKGGDYEGKSVIGTEFAQEL 453
>gi|150400833|ref|YP_001324599.1| rfaE bifunctional protein [Methanococcus aeolicus Nankai-3]
gi|150013536|gb|ABR55987.1| rfaE bifunctional protein [Methanococcus aeolicus Nankai-3]
Length = 158
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 4 KKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKA-RKTIHTEDERLYMV 61
K VF +GC+D+LH GHV + A GD L VGI SDK+I +K ++ I + R+Y++
Sbjct: 22 KIVFTNGCFDILHKGHVEYLNHAKKFGDILIVGINSDKSIKNIKGDKRPIIPLESRMYVL 81
Query: 62 RALKSV 67
+LKSV
Sbjct: 82 DSLKSV 87
>gi|15611859|ref|NP_223510.1| putative ADP-D-glycero-D-mannoheptose synthase [Helicobacter pylori
J99]
gi|12230540|sp|Q9ZKZ0|HLDE_HELPJ Bifunctional protein hldE [Includes: D-beta-D-heptose 7-phosphate
kinase (D-beta-D-heptose 7-phosphotransferase);
D-beta-D-heptose 1-phosphate adenosyltransferase ]
gi|4155356|gb|AAD06368.1| putative ADP-D-glycero-D-mannoheptose synthase [Helicobacter pylori
J99]
Length = 463
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 3 KKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKA-RKTIHTEDERLYM 60
+K VF +GC+D+LH GH ++ ++A GD L VG+ SD +I LK ++ I +E +R ++
Sbjct: 330 QKIVFTNGCFDILHKGHASYLQKAKALGDILVVGLNSDNSIKRLKGDKRPIVSEKDRAFL 389
Query: 61 VRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSD 98
+ +L V V + ++ LK PDI +D
Sbjct: 390 LASLSCVDYVVVFGEDTPIKLIQALK---PDILVKGAD 424
>gi|114777188|ref|ZP_01452199.1| RfaE bifunctional protein, domain II [Mariprofundus ferrooxydans
PV-1]
gi|114552333|gb|EAU54816.1| RfaE bifunctional protein, domain II [Mariprofundus ferrooxydans
PV-1]
Length = 159
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 15/104 (14%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELK-ARKTIHTEDERLY 59
GK+ VF +GC+D+LH GH+ + E A GD L +G+ D +I LK A + ++ +R
Sbjct: 21 GKRIVFTNGCFDLLHPGHIDYLERAKALGDALVIGLNDDDSIRRLKGASRPVNPLADRAI 80
Query: 60 MVRALKSVKEAWVNSGSGVLDFVED-----LKRLQPDIFFVNSD 98
M+ AL+ V V+ F ED + L+PDI D
Sbjct: 81 MLAALRCVDM--------VIPFCEDTPFNLISALKPDILVKGGD 116
>gi|15645477|ref|NP_207652.1| ADP-heptose synthase (rfaE) [Helicobacter pylori 26695]
gi|6093961|sp|O25529|HLDE_HELPY Bifunctional protein hldE [Includes: D-beta-D-heptose 7-phosphate
kinase (D-beta-D-heptose 7-phosphotransferase);
D-beta-D-heptose 1-phosphate adenosyltransferase ]
gi|2313990|gb|AAD07904.1| ADP-heptose synthase (rfaE) [Helicobacter pylori 26695]
Length = 461
Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 3 KKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKA-RKTIHTEDERLYM 60
+K +F +GC+D+LH GH ++ ++A GD L VG+ SD +I LK ++ I +E +R ++
Sbjct: 328 QKIIFTNGCFDLLHKGHASYLQKAKALGDILIVGLNSDASIKRLKGDKRPIVSEKDRAFL 387
Query: 61 VRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSD 98
+ +L V V + ++ LK PDI +D
Sbjct: 388 LASLSCVDYVVVFEEDTPIKLIQALK---PDILVKGAD 422
>gi|71279534|ref|YP_270855.1| glycerol-3-phosphate cytidyltransferase [Colwellia
psychrerythraea 34H]
gi|71145274|gb|AAZ25747.1| glycerol-3-phosphate cytidyltransferase [Colwellia
psychrerythraea 34H]
Length = 131
Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 12/96 (12%)
Query: 5 KVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKARKTIHTEDERLYMVRA 63
+V G YD+ H GHV E A HGD L VG+ SDK K R I+ ED+R +++R+
Sbjct: 2 RVITFGTYDIFHVGHVNIIERARLHGDHLIVGVSSDKLNIAKKGRPPIYCEDDRQHIIRS 61
Query: 64 LKSVKEAWVNSGSGVLDFVEDLKRLQPD-IFFVNSD 98
++ V E F+E+ L+ D I + N+D
Sbjct: 62 MRCVDEV----------FLEESLELKADYIKYYNAD 87
>gi|109671210|ref|ZP_01373472.1| bifunctional protein HldE [Campylobacter concisus 13826]
gi|112800051|gb|EAT97395.1| udp-N-acetylglucosamine--n-acetylmuramyl-
(pentapeptide)pyrophosphoryl-undecaprenol
n-acetylglucosamine transferase
(undecaprenyl-pp-murnac-pentapeptide-udpglcnac
glcnactransferase) [Campylobacter concisus 13826]
Length = 472
Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 24/109 (22%)
Query: 2 GKKKV-FVSGCYDMLHSGHVAFFEEAATHGDLY-VGIGSDKTIHELKAR-KTIHTEDERL 58
GKKKV F +GC+D+LH+GHV + A GDL VG+ SD ++ LK + I+++D+R
Sbjct: 334 GKKKVVFTNGCFDILHAGHVKYLARARELGDLLVVGLNSDASVKRLKGEARPINSQDDR- 392
Query: 59 YMVRALKSVKEAWVNSGSGVLDFV----ED-----LKRLQPDIFFVNSD 98
A V SG G +D+V ED + +++PD+ +D
Sbjct: 393 -----------ACVLSGLGFVDYVVIFDEDTPLNLITKIKPDVLVKGAD 430
>gi|146284137|ref|YP_001174290.1| LPS biosynthesis protein RfaE [Pseudomonas stutzeri A1501]
gi|145572342|gb|ABP81448.1| LPS biosynthesis protein RfaE [Pseudomonas stutzeri A1501]
Length = 473
Score = 58.2 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 15/104 (14%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKAR-KTIHTEDERLY 59
G+K VF +GC+D+LH+GHV + E+A GD L V + D ++ LK + I++ D R+
Sbjct: 338 GEKIVFTNGCFDILHAGHVTYLEQARAQGDRLVVAVNDDGSVSRLKGPGRPINSVDRRMA 397
Query: 60 MVRALKSVKEAWVNSGSGVLDFVED-----LKRLQPDIFFVNSD 98
++ L++V W V+ F ED L +++PD+ D
Sbjct: 398 VLAGLEAVD--W------VVCFAEDTPENLLAQVRPDVLVKGGD 433
>gi|156861874|gb|EDO55305.1| hypothetical protein BACUNI_00977 [Bacteroides uniformis ATCC 8492]
Length = 476
Score = 58.2 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 15/103 (14%)
Query: 3 KKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKAR-KTIHTEDERLYM 60
+K VF +GC+D+LH GHV + E+A GD L VG+ SD ++ LK + I+ E+ R +
Sbjct: 344 RKIVFTNGCFDILHKGHVCYLEKAKRLGDVLIVGLNSDSSVKRLKGESRPINDENARSTV 403
Query: 61 VRALKSVKEAWVNSGSGVLDFVED-----LKRLQPDIFFVNSD 98
+ AL++V V+ F ED +K + PD+ D
Sbjct: 404 LAALEAVDY--------VVIFTEDTPLNLIKTVAPDVLVKGGD 438
>gi|15605755|ref|NP_213132.1| glycerol-3-phosphate cytidyltransferase [Aquifex aeolicus VF5]
gi|2982903|gb|AAC06521.1| glycerol-3-phosphate cytidyltransferase [Aquifex aeolicus VF5]
Length = 157
Score = 58.2 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 15/104 (14%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKA-RKTIHTEDERLY 59
GKK VF +GC+D++H+GHV + E+A GD L VG+ SD ++ +K R+ I ++ R
Sbjct: 18 GKKVVFTNGCFDIIHAGHVDYLEKAKKLGDILVVGMNSDSSVRRIKGERRPIIPQEMRAK 77
Query: 60 MVRALKSVKEAWVNSGSGVLDFVED-----LKRLQPDIFFVNSD 98
++ +LK V V+ F ED +K ++PD+ D
Sbjct: 78 VLSSLKPVDY--------VVIFEEDTPEKLIKAIKPDVLVKGGD 113
>gi|68552585|ref|ZP_00591973.1| Cytidyltransferase-related [Prosthecochloris aestuarii DSM 271]
gi|68240557|gb|EAN22830.1| Cytidyltransferase-related [Prosthecochloris aestuarii DSM 271]
Length = 172
Score = 58.2 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 15/100 (15%)
Query: 6 VFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKA-RKTIHTEDERLYMVRA 63
VF +GC+D+LH+GHV + E A + GD L VG+ +D ++ LK + + +E +R ++ A
Sbjct: 28 VFTNGCFDILHAGHVQYLENARSAGDRLVVGVNTDHSVQRLKGPARPVCSEHDRCRVLAA 87
Query: 64 LKSVKEAWVNSGSGVLDFVED-----LKRLQPDIFFVNSD 98
L+SV V+ F ED ++RL PD +D
Sbjct: 88 LESV--------DAVVLFEEDTPIELIERLLPDTLVKGAD 119
>gi|156869591|gb|EDO62963.1| hypothetical protein CLOLEP_00258 [Clostridium leptum DSM 753]
Length = 432
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 5/95 (5%)
Query: 4 KKVFVSGCYDMLHSGHVAFFEEAATHGDLYVGIGSDKTIHELKARKTIHTEDERLYMVRA 63
K V++S DMLHSGH+A E+AA G L +G+ +D+ I K R + + +ER+ M
Sbjct: 2 KTVYMSFSTDMLHSGHIAIIEKAAALGQLTIGVLTDQVIASYK-RYPLLSYEERVNM--- 57
Query: 64 LKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSD 98
L+S++ + L + ++L++L+PD + V+ D
Sbjct: 58 LQSIRGVYRTVEQNSLSYADNLRKLRPD-YVVHGD 91
>gi|118744471|ref|ZP_01592463.1| rfaE bifunctional protein [Geobacter lovleyi SZ]
gi|118682548|gb|EAV88955.1| rfaE bifunctional protein [Geobacter lovleyi SZ]
Length = 491
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGDLYV-GIGSDKTIHELKA-RKTIHTEDERLY 59
G++ VF +GC+D+LH+GHV + + A GDL + G+ SD ++ LK ++ + EDER +
Sbjct: 351 GRQVVFTNGCFDLLHAGHVKYLQAARRLGDLLILGLNSDASVRRLKGPKRPLIDEDERGH 410
Query: 60 MVRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSDGHTP 102
++ AL + + L+ + LK P I D +TP
Sbjct: 411 LMAALDCIDYVCLFEEDTPLELITALK---PQILVKGGD-YTP 449
>gi|152991190|ref|YP_001356912.1| ADP-heptose synthase [Nitratiruptor sp. SB155-2]
gi|151423051|dbj|BAF70555.1| ADP-heptose synthase [Nitratiruptor sp. SB155-2]
Length = 462
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 15/104 (14%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKA-RKTIHTEDERLY 59
GK+ VF +GC+D+LH GHV + ++A GD L VG+ SD ++ LK + I+ + +R Y
Sbjct: 331 GKRIVFTNGCFDILHLGHVKYLQKAKELGDVLIVGVNSDASVKRLKGDDRPINPQFDRAY 390
Query: 60 MVRALKSVKEAWVNSGSGVLDFVED-----LKRLQPDIFFVNSD 98
++ +L++V V+ F ED +K ++PDI D
Sbjct: 391 LLASLEAVDY--------VVIFEEDTPYELIKIVKPDILVKGGD 426
>gi|77361246|ref|YP_340821.1| bifunctional ADP-L-glycero-D-manno-heptose synthase: putaive kinase
(N-terminal); sugar nucleotide transferase (C-terminal)
[Pseudoalteromonas haloplanktis TAC125]
gi|119365073|sp|Q3IHX7|HLDE_PSEHT Bifunctional protein hldE [Includes: D-beta-D-heptose 7-phosphate
kinase (D-beta-D-heptose 7-phosphotransferase);
D-beta-D-heptose 1-phosphate adenosyltransferase ]
gi|76876157|emb|CAI87379.1| bifunctional ADP-L-glycero-D-manno-heptose synthase: putaive kinase
(N-terminal); putative sugar nucleotide transferase
(C-terminal) [Pseudoalteromonas haloplanktis TAC125]
Length = 479
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELK-ARKTIHTEDERLY 59
G+ VF +GC+D+LH+GHV + +A GD L VG+ +D +I LK A + I+ DER
Sbjct: 341 GETIVFTNGCFDILHAGHVRYLAQAKARGDRLVVGLNNDASISRLKGADRPINPLDERAM 400
Query: 60 MVRALKSVKEAWV 72
++ AL SV WV
Sbjct: 401 VLSALSSVD--WV 411
>gi|149197450|ref|ZP_01874501.1| ADP-heptose synthase [Lentisphaera araneosa HTCC2155]
gi|149139468|gb|EDM27870.1| ADP-heptose synthase [Lentisphaera araneosa HTCC2155]
Length = 160
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 4 KKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELK-ARKTIHTEDERLYMV 61
K V +G +D+LH GH+ + EEA+ GD L + + SD ++ LK R+ I ED+R YM+
Sbjct: 23 KIVATNGVFDLLHPGHMEYLEEASELGDALVIALNSDASVKALKDPRRPIINEDDRAYML 82
Query: 62 RALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSD 98
+L V + ++ L+ + L +QP I+ D
Sbjct: 83 ASLDCVSKVFIFED---LEALNTLLEIQPHIYVKGGD 116
>gi|58039486|ref|YP_191450.1| Bifunctional protein RfaE (involved in
ADP-L-glycero-D-manno-heptose synthesis) [Gluconobacter
oxydans 621H]
gi|81352104|sp|Q5FS52|HLDE_GLUOX Bifunctional protein hldE [Includes: D-beta-D-heptose 7-phosphate
kinase (D-beta-D-heptose 7-phosphotransferase);
D-beta-D-heptose 1-phosphate adenosyltransferase ]
gi|58001900|gb|AAW60794.1| Bifunctional protein RfaE (involved in
ADP-L-glycero-D-manno-heptose synthesis) [Gluconobacter
oxydans 621H]
Length = 479
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 15/104 (14%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKA-RKTIHTEDERLY 59
G K VF +GC+D++H GHV+ + AA GD L V + +D+++ LK + + E+ R
Sbjct: 342 GAKVVFTNGCFDLVHPGHVSLLQAAAREGDRLVVALNTDRSVSRLKGPTRPVQKEEARAR 401
Query: 60 MVRALKSVKEAWVNSGSGVLDFVED-----LKRLQPDIFFVNSD 98
++ AL+SV V+ F ED ++ L+PDI +D
Sbjct: 402 VIGALRSVDL--------VVLFDEDTPLEVIRTLKPDILVKGAD 437
>gi|150402117|ref|YP_001329411.1| cytidyltransferase-related domain [Methanococcus maripaludis C7]
gi|150033147|gb|ABR65260.1| cytidyltransferase-related domain [Methanococcus maripaludis C7]
Length = 150
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 1 MGKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKARKTIHTEDERLY 59
M KK +G +D+LH GH A H D L V I D+T+ ++K R + E++R
Sbjct: 1 MEKKIAVTAGTFDLLHPGHFNTLNFAKKHADELVVIIARDETVKKIKGRSPVIPEEQRKI 60
Query: 60 MVRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSDGHTPAKERLCQELGIRYI 116
M+ ALK V A + S + L E + ++PDI + D T L +L ++
Sbjct: 61 MIEALKPVDRAVLGSLTNKL---EPILEIRPDIIVLGPDQTTYQITELKSQLAKHFL 114
>gi|134045789|ref|YP_001097275.1| cytidyltransferase-related domain [Methanococcus maripaludis C5]
gi|132663414|gb|ABO35060.1| cytidyltransferase-related domain [Methanococcus maripaludis C5]
Length = 150
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 1 MGKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKARKTIHTEDERLY 59
M KK +G +D+LH GH A H D L V I D+T+ ++K R + E++R
Sbjct: 1 MEKKIAVTAGTFDLLHPGHFNTLNFAKKHADELVVIIARDETVKKIKGRSPVIPEEQRKV 60
Query: 60 MVRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSDGHTPAKERLCQELGIRYI 116
M+ ALK V A + S + L E + ++PD+ + D T L +L ++
Sbjct: 61 MIEALKPVDRAVLGSLTNKL---EPILEIRPDVIILGPDQTTYQINELKSQLAKHFL 114
>gi|154174008|ref|YP_001408598.1| bifunctional protein HldE [Campylobacter curvus 525.92]
gi|112803975|gb|EAU01319.1| bifunctional protein HldE [Campylobacter curvus 525.92]
Length = 468
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 23/107 (21%)
Query: 3 KKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKAR-KTIHTEDERLYM 60
KK VF +GC+D+LH+GH + +A GD L VG+ SD ++ LK + I+++ +R
Sbjct: 336 KKVVFTNGCFDILHAGHARYLAKARDFGDILIVGLNSDASVRRLKGESRPINSQLDR--- 392
Query: 61 VRALKSVKEAWVNSGSGVLDFV---------EDLKRLQPDIFFVNSD 98
A V SG G +D+V E +K+L+PDI +D
Sbjct: 393 ---------ACVLSGLGFVDYVVIFDEDTPMELIKKLRPDILVKGAD 430
>gi|109947746|ref|YP_664974.1| ADP-heptose synthase [Helicobacter acinonychis str. Sheeba]
gi|123173328|sp|Q17WK1|HLDE_HELAH Bifunctional protein hldE [Includes: D-beta-D-heptose 7-phosphate
kinase (D-beta-D-heptose 7-phosphotransferase);
D-beta-D-heptose 1-phosphate adenosyltransferase ]
gi|109714967|emb|CAJ99975.1| ADP-heptose synthase [Helicobacter acinonychis str. Sheeba]
Length = 463
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 3 KKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKA-RKTIHTEDERLYM 60
+K VF +GC+D+LH GH ++ ++A GD L VG+ SD +I LK ++ I E +R ++
Sbjct: 330 QKVVFTNGCFDILHKGHASYLQKAKALGDILIVGLNSDASIKRLKGDKRPIVGEKDRAFL 389
Query: 61 VRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSD 98
+ +L V V + ++ LK PDI +D
Sbjct: 390 LASLSCVDYIVVFEEDTPIGLIQALK---PDILVKGAD 424
>gi|83774831|dbj|BAE64954.1| unnamed protein product [Aspergillus oryzae]
Length = 497
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 4 KKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKA-RKTIHTEDERLYMV 61
K VF +GC+DMLH+GHV++ + A GD L VG+ SD ++ ++K R+ I E +R+ +
Sbjct: 361 KIVFTNGCFDMLHAGHVSYLQRAKALGDLLLVGLNSDSSVRQIKGNRRPIVPEAQRVQTL 420
Query: 62 RALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSD 98
L+ V + L ++ +K PD SD
Sbjct: 421 AGLECVDFVVLFDQETPLHLIQAIK---PDFLVKGSD 454
>gi|34557093|ref|NP_906908.1| PUTATIVE ADP-HEPTOSE SYNTHASE [Wolinella succinogenes DSM 1740]
gi|54036027|sp|Q7M9U1|HLDE_WOLSU Bifunctional protein hldE [Includes: D-beta-D-heptose 7-phosphate
kinase (D-beta-D-heptose 7-phosphotransferase);
D-beta-D-heptose 1-phosphate adenosyltransferase ]
gi|34482808|emb|CAE09808.1| PUTATIVE ADP-HEPTOSE SYNTHASE [Wolinella succinogenes]
Length = 474
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKAR-KTIHTEDERLY 59
G+K VF +GC+D+LH+GHV + ++A GD L VG+ SD ++ LK + I+++++R
Sbjct: 343 GRKIVFTNGCFDILHAGHVQYLQKAKACGDCLIVGLNSDASVRRLKGELRPINSQEDRAL 402
Query: 60 MVRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSD 98
++ L++V V + + + ++PD+ D
Sbjct: 403 VLSGLEAVDYVVVFDEETPYELI---RAIEPDVLVKGGD 438
>gi|86134188|ref|ZP_01052770.1| glycerol-3-phosphate cytidylyltransferase [Tenacibaculum sp.
MED152]
gi|85821051|gb|EAQ42198.1| glycerol-3-phosphate cytidylyltransferase [Polaribacter dokdonensis
MED152]
Length = 141
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 1 MGKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKARKTIHTEDERLY 59
M KK + VSG ++ +H GH+ +F A D L+V + SD LK K EDERL+
Sbjct: 1 MKKKAIIVSGYFNPIHKGHLEYFNNAKALADELFVIVNSDLQ-RGLKGSKEFQKEDERLF 59
Query: 60 MVRALKSVKEAW--VNSGSGVLDFVEDLKRLQPDIF---FVN---SDGHTPAKERLCQEL 111
+V+ +K+V +A ++ V + + L+ D + F N D ++ + +C EL
Sbjct: 60 IVQNIKAVDKAIISIDKDRTVCESIRSLQEKYGDDYQLGFANGGDQDNNSIPEAPICNEL 119
Query: 112 GIRYI 116
GI+ I
Sbjct: 120 GIQLI 124
>gi|57168032|ref|ZP_00367171.1| rfaE protein [Campylobacter coli RM2228]
gi|57020406|gb|EAL57075.1| rfaE protein [Campylobacter coli RM2228]
Length = 443
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 3 KKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKAR-KTIHTEDERLYM 60
KK +F +GC+D++H GH+ + E+A GD L VG+ SDK++ LK + I++E +R M
Sbjct: 312 KKIIFTNGCFDIVHFGHIKYLEKAKRLGDILIVGLNSDKSVKRLKGEDRPINSEFQRACM 371
Query: 61 VRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSD 98
+ A V + L+ + LK PDI +D
Sbjct: 372 LAAFYFVDFVVIFDEDTPLELISFLK---PDILVKGAD 406
>gi|146329580|ref|YP_001209025.1| ADP-heptose synthase [Dichelobacter nodosus VCS1703A]
gi|146233050|gb|ABQ14028.1| ADP-heptose synthase [Dichelobacter nodosus VCS1703A]
Length = 478
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 15/104 (14%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELK-ARKTIHTEDERLY 59
GK V +GC+D+LH+GHV + EEA GD L V I +D+++ LK A + +T R
Sbjct: 339 GKTVVMTNGCFDILHAGHVRYLEEAKALGDCLIVAINTDESVKRLKGADRPANTLASRAA 398
Query: 60 MVRALKSVKEAWVNSGSGVLDFVED-----LKRLQPDIFFVNSD 98
++ AL SV W V+ F ED + + PDI D
Sbjct: 399 VLAALHSVD--W------VISFAEDTPADLIAAINPDILVKGGD 434
>gi|15678864|ref|NP_275981.1| autotrophic growth protein [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2621935|gb|AAB85342.1| autotrophic growth protein [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 151
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 4 KKVFVSGCYDMLHSGHVAFFEEAATHGD----LYVGIGSDKTIHELKARKTIHTEDERLY 59
K V +G +D++H GH F EEA G L V + D T+ K R I E +RL
Sbjct: 2 KTVMATGTFDIIHPGHGFFLEEARKLGGEDARLVVVLARDSTVRARK-RTPIVGEKQRLE 60
Query: 60 MVRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSD 98
+VR LK V EA++ S + D E + R++PDI + D
Sbjct: 61 VVRMLKPVDEAYLGSET---DMFEIVHRIKPDIIAIGPD 96
>gi|149173941|ref|ZP_01852570.1| RfaE bifunctional protein, domains I & II [Planctomyces maris DSM
8797]
gi|148847471|gb|EDL61805.1| RfaE bifunctional protein, domains I & II [Planctomyces maris DSM
8797]
Length = 514
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 1 MGKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKA--RKTIHTEDER 57
+G+K V +GC+D++H GHV++ E+AA GD L V + SD ++ L + I +D R
Sbjct: 355 LGQKVVLTNGCFDVMHIGHVSYLEQAAAEGDCLIVAVNSDDSVRSLNKGPDRPIFGQDHR 414
Query: 58 LYMVRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSDGHTPAKERL 107
M+ AL+ + V S + + LK PD+ G T KE +
Sbjct: 415 ASMLAALEGIDYVVVFDESTPCELISVLK---PDLLV---KGGTYQKEEI 458
>gi|145596486|ref|YP_001160783.1| rfaE bifunctional protein [Salinispora tropica CNB-440]
gi|145305823|gb|ABP56405.1| rfaE bifunctional protein [Salinispora tropica CNB-440]
Length = 562
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 75/140 (53%), Gaps = 18/140 (12%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGDLY-VGIGSDKTIHELK-ARKTIHTEDERLY 59
G+ VF +GC+D+LH GHV + E+A GDL V + +D ++ LK A + ++ ++R+
Sbjct: 417 GRSVVFTNGCFDVLHPGHVRYLEQARALGDLLVVAVNADGSVRRLKGADRPVNPVEDRVA 476
Query: 60 MVRALKSVKEAWVNSGSGVLDFVED-----LKRLQPDIFFVNSDGHTPAKERLCQELGIR 114
++ AL V V+ F ED ++ ++PDI+ D + P E + + +R
Sbjct: 477 LLAALTHVDH--------VVVFEEDSPARLIEAIRPDIYVKGGD-YPP--ELVPEAPLVR 525
Query: 115 YIVSQRIPHGGLPVRSTTAL 134
+ Q G +P RST+A+
Sbjct: 526 RLGGQVRTLGYVPDRSTSAI 545
>gi|145618491|ref|ZP_01774549.1| rfaE bifunctional protein [Geobacter bemidjiensis Bem]
gi|144945125|gb|EDJ80192.1| rfaE bifunctional protein [Geobacter bemidjiensis Bem]
Length = 487
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKARK-TIHTEDERLY 59
GKK VF +GC+D+LH GHV + ++A GD L VG+ +D ++ LK K + E ER +
Sbjct: 351 GKKVVFTNGCFDLLHVGHVKYLQKARGLGDILVVGLNTDASVRRLKGEKRPLIEETERAH 410
Query: 60 MVRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSD 98
++ AL + + L +E L PDI D
Sbjct: 411 ILAALDCIDYVVLFDEDTPLKVIETLG---PDILVKGGD 446
>gi|90411896|ref|ZP_01219904.1| putative ADP-heptose synthase [Photobacterium profundum 3TCK]
gi|90327154|gb|EAS43526.1| putative ADP-heptose synthase [Photobacterium profundum 3TCK]
Length = 476
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKAR-KTIHTEDERLY 59
G+K V +GC+D+LH+GHVA+ EAA GD L V + SD ++ LK + ++ ED R+
Sbjct: 339 GEKVVMTNGCFDILHAGHVAYLTEAAKLGDRLIVAVNSDSSVQGLKGPGRPVNPEDRRMA 398
Query: 60 MVRALKSVKEAWV 72
++ L +V WV
Sbjct: 399 VLAGLGAVD--WV 409
>gi|88603647|ref|YP_503825.1| Cytidyltransferase-related [Methanospirillum hungatei JF-1]
gi|88189109|gb|ABD42106.1| Cytidyltransferase-related [Methanospirillum hungatei JF-1]
Length = 156
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 8/130 (6%)
Query: 5 KVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKARKTIHTEDERLYMVRA 63
+V +G +D+LH GH+ + EE+A GD LYV + D I K R I E++RL MV A
Sbjct: 3 RVVATGTFDILHPGHLWYLEESAKLGDELYVIVARDANIRH-KPRPVI-PEEQRLVMVAA 60
Query: 64 LKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSDGHTPAK--ERLCQELGIRYIVSQRI 121
LK V A + + D ++ ++PDI + + H + ++ ++ IR V +
Sbjct: 61 LKPVTHAVLGD---LEDMFRPIREIKPDIITLGCNQHFDPETLQKALEKQNIRAQVVRIS 117
Query: 122 PHGGLPVRST 131
H P S+
Sbjct: 118 EHSSSPFTSS 127
>gi|119468545|ref|ZP_01611636.1| fused heptose 7-phosphate kinase/heptose 1-phosphate
adenyltransferase [Alteromonadales bacterium TW-7]
gi|119448053|gb|EAW29318.1| fused heptose 7-phosphate kinase/heptose 1-phosphate
adenyltransferase [Alteromonadales bacterium TW-7]
Length = 479
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKA-RKTIHTEDERLY 59
G+ VF +GC+D+LH+GHV + +A GD L VG+ +D +I LK + I+ DER
Sbjct: 341 GETIVFTNGCFDILHAGHVRYLAQAKARGDRLVVGLNNDDSITRLKGPERPINPLDERAM 400
Query: 60 MVRALKSVKEAWV 72
++ AL SV WV
Sbjct: 401 VLSALASVD--WV 411
>gi|45358506|ref|NP_988063.1| glycerol-3-phosphate cytidyltransferase [Methanococcus maripaludis
S2]
gi|44921264|emb|CAF30499.1| glycerol-3-phosphate cytidyltransferase [Methanococcus maripaludis
S2]
Length = 150
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 1 MGKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKARKTIHTEDERLY 59
M KK +G +D+LH GH A H D L V I D+T+ ++K R + E++R
Sbjct: 1 MEKKIAVTAGTFDLLHPGHFNTLNFAKKHADELVVIIARDETVKKIKGRSPVIPEEQRKI 60
Query: 60 MVRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSDGHT 101
M+ ALK V A + S + L E + ++PD+ + D T
Sbjct: 61 MIEALKPVDRAVLGSLTNKL---EPILEIRPDVIVLGPDQTT 99
>gi|150008207|ref|YP_001302950.1| hypothetical protein BDI_1573 [Parabacteroides distasonis ATCC
8503]
gi|149936631|gb|ABR43328.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
Length = 970
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 27/171 (15%)
Query: 223 GSQDSLGIVLPGLNRLYYNGDYWPESIESITDRDLLGWIEERLWLVP-LSPRHAEY---- 277
G QD G VL GL L N E L+ W+ E L+ P P H Y
Sbjct: 780 GWQDQYGGVLHGLKLLQTN--------EGFNQNPLVRWLPEYLFTDPEYRPCHLLYYTGI 831
Query: 278 -----DVLAD--------THINESDAQRLSQAAEACWQALKAKDVIAWGKAASDSFEAQV 324
D+L++ + ++ + A ++A++ D +A+GK ++E
Sbjct: 832 TRTAKDILSEIVRGMFLNSEVHLGLLSEMKAHALDMYEAIQCGDFVAYGKLVGKTWEQNK 891
Query: 325 AMFPNMIISEVSTVLETYKSKVLGWKISGAGGGGYLVFVSEQPVEKAIQIR 375
A+ + V ++ ++ LG+K+ GAGGGGYL V++ P A+QIR
Sbjct: 892 ALDSGTNPAAVEAIISKIQAYALGYKLPGAGGGGYLYIVAKDP-GAALQIR 941
>gi|145220368|ref|YP_001131077.1| rfaE bifunctional protein [Prosthecochloris vibrioformis DSM 265]
gi|145206532|gb|ABP37575.1| rfaE bifunctional protein [Prosthecochloris vibrioformis DSM 265]
Length = 170
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 15/104 (14%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKAR-KTIHTEDERLY 59
GK+ VF +GC+D+LH+GHV + EA GD L VG+ SD ++ LK + + +E +R
Sbjct: 25 GKRVVFTNGCFDILHAGHVGYLAEARRLGDRLIVGLNSDASVRRLKGPLRPVCSEADRAA 84
Query: 60 MVRALKSVKEAWVNSGSGVLDFVED-----LKRLQPDIFFVNSD 98
++ +L++V S V F ED + L PDI +D
Sbjct: 85 VLSSLEAV--------SAVTVFDEDTPEELIGLLLPDILVKGAD 120
>gi|89091905|ref|ZP_01164860.1| LPS biosynthesis protein RfaE [Oceanospirillum sp. MED92]
gi|89083640|gb|EAR62857.1| LPS biosynthesis protein RfaE [Oceanospirillum sp. MED92]
Length = 476
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 34/104 (32%), Positives = 59/104 (56%), Gaps = 15/104 (14%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKAR-KTIHTEDERLY 59
G+ VF +GC+D+LH+GHV + ++A GD L + I SD+++ LK + I+ + R+
Sbjct: 339 GESIVFTNGCFDILHAGHVGYLQQAKAQGDRLVLAINSDESVSRLKGPGRPINPVERRMA 398
Query: 60 MVRALKSVKEAWVNSGSGVLDFVED-----LKRLQPDIFFVNSD 98
++ L++V W VL F ED L++++PD+ D
Sbjct: 399 VLSGLEAVD--W------VLYFKEDTPERLLEQVRPDVLVKGGD 434
>gi|119880477|ref|ZP_01646812.1| rfaE bifunctional protein [Salinispora arenicola CNS205]
gi|119826554|gb|EAX29104.1| rfaE bifunctional protein [Salinispora arenicola CNS205]
Length = 643
Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 8/135 (5%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGDLY-VGIGSDKTIHELK-ARKTIHTEDERLY 59
G+ VF +GC+D+LH GHV + E+A GDL V + +D ++ LK A + ++ ++R+
Sbjct: 498 GRSVVFTNGCFDVLHPGHVRYLEQARALGDLLVVAVNADGSVRRLKGADRPVNPVEDRVA 557
Query: 60 MVRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSDGHTPAKERLCQELGIRYIVSQ 119
++ AL V V +E ++ PD++ D + P E + + +R + Q
Sbjct: 558 LLAALTHVDHVVVFEEDSPARLIEAVR---PDVYVKGGD-YPP--ELVPEAPLVRRLGGQ 611
Query: 120 RIPHGGLPVRSTTAL 134
G +P RST+A+
Sbjct: 612 VRTLGYVPDRSTSAI 626
>gi|26249531|ref|NP_755571.1| Putative glycerol-3-phosphate cytidyltransferase [Escherichia coli
CFT073]
gi|26109939|gb|AAN82144.1|AE016766_232 Putative glycerol-3-phosphate cytidyltransferase [Escherichia coli
CFT073]
Length = 135
Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 4 KKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKARKTIHTEDERLYMVR 62
+KV G +D+LH GH+ + A GD L VG+ SD K R ++ E ERL ++R
Sbjct: 6 RKVITFGTFDVLHIGHINILKRAKKMGDYLIVGVSSDYLNFSKKQRYPVYPETERLEIIR 65
Query: 63 ALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSD--GHTPAKERLCQ 109
+LK V E ++ + E +K+ + DI + D G + LC+
Sbjct: 66 SLKFVDEVFIEESLELKG--EYIKKFKADILVMGDDWLGRFDEYKELCE 112
>gi|24215110|ref|NP_712591.1| glycerol-3-phosphate cytidylyltransferase [Leptospira interrogans
serovar Lai str. 56601]
gi|45657412|ref|YP_001498.1| glycerol-3-phosphate cytidyltransferase [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
gi|24196172|gb|AAN49609.1|AE011409_1 glycerol-3-phosphate cytidylyltransferase [Leptospira interrogans
serovar Lai str. 56601]
gi|45600651|gb|AAS70135.1| glycerol-3-phosphate cytidyltransferase [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
Length = 158
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 3 KKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKA-RKTIHTEDERLYM 60
KK VF +GC+D++H GH+ + +A GD L++G+ SD ++ LK ++ + E++R +
Sbjct: 24 KKIVFTNGCFDLVHKGHITYLSQARELGDFLWIGLNSDSSVKRLKGEQRPLICEEDRAIL 83
Query: 61 VRALKSVKEAWVNSGSGVLDFVEDLK 86
+ L+ V + S LD + +K
Sbjct: 84 LSNLRFVDAVTIFSQDTPLDLIRLIK 109
>gi|118594554|ref|ZP_01551901.1| RfaE bifunctional protein, domains I & II [Methylophilales
bacterium HTCC2181]
gi|118440332|gb|EAV46959.1| RfaE bifunctional protein, domains I & II [Methylophilales
bacterium HTCC2181]
Length = 483
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELK-ARKTIHTEDERLY 59
G K F +GC+D+LH+GHV++ E+A D L +G+ SD ++ +LK A + + +D+R
Sbjct: 350 GLKIGFTNGCFDILHAGHVSYLEQAKRKVDHLILGLNSDSSVKKLKGAGRPLVNQDDRAR 409
Query: 60 MVRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSDGHT 101
++ +L+S+ + + + + ++ +K PDI SD T
Sbjct: 410 VLCSLESIDTIVIFNENTPIKLIQIIK---PDILMKGSDYQT 448
>gi|54024380|ref|YP_118622.1| hypothetical protein nfa24110 [Nocardia farcinica IFM 10152]
gi|54015888|dbj|BAD57258.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 506
Score = 54.7 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 2 GKKKVFVSGCYDMLHSGHVAFFEEAATHGD-LYVGIGSDKTIHELKA-RKTIHTEDERLY 59
G++ VF +GC+D+LH+GH+A+ EA GD L V + SD ++ LK + ++ + +R
Sbjct: 366 GRRVVFTNGCFDVLHAGHIAYLNEAKRLGDVLVVAVNSDSSVRALKGPDRPVNPDHDRCA 425
Query: 60 MVRALKSVKEAWVNSGSGVLDFVEDLKRLQPDIFFVNSD 98
++ AL V V VE L+ +PD++ D
Sbjct: 426 VLAALSCVDHVTVFEEDTP---VELLRATEPDLYVKGGD 461
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.318 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,488,850,880
Number of Sequences: 5470121
Number of extensions: 64361977
Number of successful extensions: 140181
Number of sequences better than 1.0e-05: 94
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 140137
Number of HSP's gapped (non-prelim): 97
length of query: 379
length of database: 1,894,087,724
effective HSP length: 134
effective length of query: 245
effective length of database: 1,161,091,510
effective search space: 284467419950
effective search space used: 284467419950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)