R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|12321169|gb|AAG50671.1|AC079829_4 (AC079829) unknown protein [Arabidopsis
thaliana]
Length = 611
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | || 611
0 150 300 450 600
Plus Strand HSPs:
Score = 340 (119.7 bits), Expect = 3.1e-29, P = 3.1e-29
Identities = 74/143 (51%), Positives = 95/143 (66%), Frame = +1
Query: 1 VEVVQVSSTSSPEPSVPVSAETQPPILPLPVTSRPSYRPGVAPIQIHHGYNYRGRGRGRG 180
VEVVQVSS++ E SVPV++E QPPILPLP ++RP+ +P H+GY RGRGRGRG
Sbjct: 392 VEVVQVSSSAGLEQSVPVTSEAQPPILPLPSSARPTQKPNGHSFPNHNGYRGRGRGRGRG 451
Query: 181 TGGLHPVTKFTEDFDFTAMNXKFKKDEVWGSSW*KLSLIQKKKDGERKMPLMKDYQDEEX 360
G H V KFTEDFDFTAMN KF KDEVWG K + + +D + P + + + +
Sbjct: 452 AGRSHQVMKFTEDFDFTAMNEKFNKDEVWGHLG-KSTTLDGDEDDDS--PTVDEAELPK- 507
Query: 361 *RCFXL*S*PIYNKDDFFESLSS 429
+ + P+YNKDDFF+SLSS
Sbjct: 508 -----IEAKPVYNKDDFFDSLSS 525
>gi|12320748|gb|AAG50526.1|AC084221_8 (AC084221) unknown protein [Arabidopsis
thaliana]
Length = 643
Frame 1 hits (HSPs): ____ ____ ________ ___
__________________________________________________
Database sequence: | | | | | | 643
0 150 300 450 600
Plus Strand HSPs:
Score = 221 (77.8 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 49/97 (50%), Positives = 62/97 (63%), Frame = +1
Query: 139 HHGYNYRGRGRGRGTGGLHPVTKFTEDFDFTAMNXKFKKDEVWGSSW*KLSLIQKKKDGE 318
H+GY RGRGRGRG G H V KFTEDFDFTAMN KF KDEVWG K + + +D +
Sbjct: 470 HNGYRGRGRGRGRGAGRSHQVMKFTEDFDFTAMNEKFNKDEVWGHLG-KSTTLDGDEDDD 528
Query: 319 RKMPLMKDYQDEEX*RCFXL*S*PIYNKDDFFESLSS 429
P + + + + + + P+YNKDDFF+SLSS
Sbjct: 529 S--PTVDEAELPK------IEAKPVYNKDDFFDSLSS 557
Score = 122 (42.9 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 24/38 (63%), Positives = 32/38 (84%), Frame = +1
Query: 1 VEVVQVSSTSSPEPSVPVSAETQPPILPLPVTSRPSYR 114
VEVVQVSS++ E SVPV++E QPPILPLP ++RP+ +
Sbjct: 392 VEVVQVSSSAGLEQSVPVTSEAQPPILPLPSSARPTQK 429
Score = 53 (18.7 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 9/12 (75%), Positives = 10/12 (83%), Frame = +1
Query: 145 GYNYRGRGRGRG 180
GY Y GRG+GRG
Sbjct: 626 GYGYGGRGQGRG 637
Score = 49 (17.2 bits), Expect = 6.0e-19, Sum P(2) = 6.0e-19
Identities = 11/33 (33%), Positives = 19/33 (57%), Frame = +1
Query: 16 VSSTSSPEPSVPVSAETQPPILP--LPVTSRPS 108
+ ST PS +++E PP+L P+T+ P+
Sbjct: 267 LQSTLQSAPSPSLASEMAPPLLSNKAPITAPPT 299
Score = 41 (14.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 7/11 (63%), Positives = 9/11 (81%), Frame = +1
Query: 142 HGYNYRGRGRG 174
+GY RG+GRG
Sbjct: 627 YGYGGRGQGRG 637
Score = 39 (13.7 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 10/17 (58%), Positives = 10/17 (58%), Frame = +1
Query: 145 GYNYRGRGR--GRGTGG 189
GY RG G GRG GG
Sbjct: 608 GYGGRGYGGYGGRGGGG 624
>gi|10177004|dbj|BAB10254.1| (AB020744) gene_id:K9E15.11~unknown protein
[Arabidopsis thaliana]
Length = 571
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 571
0 150 300 450
Plus Strand HSPs:
Score = 106 (37.3 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 29/74 (39%), Positives = 40/74 (54%), Frame = +1
Query: 205 KFTEDFDFTAMNXKFKKDEVWGSSW*KLSLIQKKKDGERKMPLMKDYQDEEX*RCFXL*S 384
++TE+FDF AMN KFKK E+WG L ++ +R DY +E
Sbjct: 426 EYTEEFDFEAMNEKFKKSELWGY----LG-----RNNQRNQ---NDYGEETAIEPNAEGK 473
Query: 385 *PIYNKDDFFESLS 426
P YNKDDFF+++S
Sbjct: 474 -PAYNKDDFFDTIS 486
Score = 49 (17.2 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 11/30 (36%), Positives = 16/30 (53%), Frame = +1
Query: 28 SSPEPSVPVSAETQPPILPLPVTSRPSYRP 117
S+ PS + P+LPLPV++ S P
Sbjct: 392 SANVPSQSFAPRNHAPLLPLPVSAHQSRIP 421
Score = 45 (15.8 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 15/59 (25%), Positives = 26/59 (44%), Frame = +1
Query: 4 EVVQVSSTSSPEPSVP----VSAETQPPILPLPVTSRPSYRPGVAP-IQIHHGYNYRGR 165
+VV ++ P S+P A P++P P++ P + P +Q YRG+
Sbjct: 324 KVVYDPQSNHPHRSIPHELPAVASNSAPVIPGPLSKSPESFFDMDPSLQSRQQMVYRGQ 382
>gi|4200286|emb|CAA68149.1| (X99836) rap55 [Pleurodeles waltl]
Length = 467
Frame 1 hits (HSPs): ___ __________
__________________________________________________
Database sequence: | | | | | 467
0 150 300 450
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 0.053, Sum P(2) = 0.052
Identities = 32/86 (37%), Positives = 44/86 (51%), Frame = +1
Query: 115 PGVAPIQIHHGYNYRGRGRGR-GTGGLHPVTKFTEDFDFTAMNXKFKKDEVWGSSW*KLS 291
PG P + G +RG GRGR G P+ KF +DFDF + N +F K+E+ KL
Sbjct: 267 PGAPPARRGRG-GHRG-GRGRFGIRRDGPM-KFEKDFDFESANAQFTKEEIDREFHNKLK 323
Query: 292 L-------IQKKKDGERKMPLMKDYQDEE 357
L ++K +GE K D Q+ E
Sbjct: 324 LKDDKPEKVEKPVNGEDKGDSGIDTQNSE 352
Score = 50 (17.6 bits), Expect = 0.053, Sum P(2) = 0.052
Identities = 11/27 (40%), Positives = 13/27 (48%), Frame = +1
Query: 10 VQVSSTSSPEPSVPVSAETQPPILPLP 90
VQ + S P PV + PP PLP
Sbjct: 199 VQTTPASHLPPPGPVGRRSPPPARPLP 225
>gi|999021|gb|AAB34153.1| nuclear antigen EBNA1 [Epstein-Barr virus EBV, C15
isolate, Peptide Partial, 90 aa, segment 2 of 2]
Length = 90
Frame 1 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | | 90
0 20 40 60 80
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.39, P = 0.33
Identities = 19/35 (54%), Positives = 20/35 (57%), Frame = +1
Query: 94 TSRPSYRPGVAPIQIHHGYNY-RGRGRGRGTGGLHP 198
TS P G P Q G N+ RGRGRGRG GG P
Sbjct: 20 TSGPDGSSGSGP-QRRGGDNHGRGRGRGRGRGGGRP 54
>gi|330370|gb|AAA45883.1| (M13180) nuclear antigen (EBNA 1) [Human herpesvirus
4]
Length = 58
Frame 1 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | 58
0 20 40
Plus Strand HSPs:
Score = 70 (24.6 bits), Expect = 0.52, P = 0.41
Identities = 19/35 (54%), Positives = 20/35 (57%), Frame = +1
Query: 94 TSRPSYRPGVAPIQIHHGYNY-RGRGRGRGTGGLHP 198
TS P G P Q G N+ RGRGRGRG GG P
Sbjct: 20 TSGPEGSGGSGP-QRRGGDNHGRGRGRGRGRGGGRP 54
>gi|628184|pir||S42440 nuclear antigen EBNA1 - human herpesvirus 4
>gi|555157|gb|AAA45889.1| (M13941) nuclear antigen 1 [Human
herpesvirus 4]
Length = 66
Frame 1 hits (HSPs): ___________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 66
0 20 40 60
__________________
Annotated Domains:
DOMO DM06186: EPSTEIN-BARRVIRUSNUCLEARANTIGEN 1..66
__________________
Plus Strand HSPs:
Score = 70 (24.6 bits), Expect = 0.52, P = 0.41
Identities = 19/35 (54%), Positives = 20/35 (57%), Frame = +1
Query: 94 TSRPSYRPGVAPIQIHHGYNY-RGRGRGRGTGGLHP 198
TS P G P Q G N+ RGRGRGRG GG P
Sbjct: 20 TSGPEGSGGSGP-QRRGGDNHGRGRGRGRGRGGGRP 54
>gi|475488|gb|AAA17816.1| (U08173) phytochrome [Lycopersicon esculentum]
Length = 117
Frame 2 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | 117
0 50 100
Plus Strand HSPs:
Score = 78 (27.5 bits), Expect = 0.68, P = 0.49
Identities = 19/59 (32%), Positives = 31/59 (52%), Frame = +2
Query: 44 LCQFLLKLNHQYCHCQ*LHGPVTDPV*LLSKFIMAIIIEDVEEEGELGVCTQSQNSLRI 220
LC L+ H YCH Q + + ++ +MA+++ D +EEGE +QSQ R+
Sbjct: 41 LCGSTLRAPH-YCHLQYMENMNS-----IASLVMAVVVNDGDEEGESSDSSQSQKRKRL 93
>gi|999017|gb|AAB34150.1| nuclear antigen EBNA1 [Epstein-Barr virus EBV, NPC
isolate, Peptide Partial, 90 aa, segment 2 of 2]
Length = 90
Frame 1 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | | 90
0 20 40 60 80
Plus Strand HSPs:
Score = 66 (23.2 bits), Expect = 1.5, P = 0.78
Identities = 18/35 (51%), Positives = 20/35 (57%), Frame = +1
Query: 94 TSRPSYRPGVAPIQIHHGYNY-RGRGRGRGTGGLHP 198
+S P G P Q G N+ RGRGRGRG GG P
Sbjct: 20 SSGPEGSGGSGP-QRRGGDNHGRGRGRGRGRGGGRP 54
>gi|11419686 ref|XP_010095.1| hypothetical protein FLJ20506 [Homo sapiens]
Length = 238
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 238
0 50 100 150 200
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 3.4, P = 0.97
Identities = 20/62 (32%), Positives = 33/62 (53%), Frame = +1
Query: 13 QVSSTSSPEPSVPVSAETQPPILP-LPVTSRPSYRPGVAPIQIHH-GYNYRGRGRGRGTG 186
Q+ T++ P P +A P+ P LP + +Y G PI+ HH +++ G+ +
Sbjct: 42 QLPPTAALAPGAPRAARGSVPLQPPLPPAALGAYSGGAGPIRHHHPAHHFHHHGQAQP-- 99
Query: 187 GLHP 198
GLHP
Sbjct: 100 GLHP 103
>gi|808666|gb|AAA66540.1| (M12553) unknown protein [Human herpesvirus 4]
Length = 82
Frame 1 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | | 82
0 20 40 60 80
Plus Strand HSPs:
Score = 62 (21.8 bits), Expect = 4.3, P = 0.99
Identities = 18/35 (51%), Positives = 19/35 (54%), Frame = +1
Query: 94 TSRPSYRPGVAPIQIHHGYNY-RGRGRGRGTGGLHP 198
TS P P Q G N+ RGRGRGRG GG P
Sbjct: 20 TSGPEGSGRSGP-QRRGGDNHGRGRGRGRGRGGGRP 54
>gi|94231|pir||S23822 hypothetical protein 2 - feline immunodeficiency virus
>gi|59289|emb|CAA40320.1| (X57002) ORF2 [Feline immunodeficiency
virus]
Length = 78
Frame -2 hits (HSPs): __________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 78
0 20 40 60
__________________
Annotated Domains:
DOMO DM04868: 1..78
__________________
Minus Strand HSPs:
Score = 61 (21.5 bits), Expect = 5.6, P = 1.0
Identities = 12/28 (42%), Positives = 18/28 (64%), Frame = -2
Query: 414 KEVILVVNRLTSKXETSSXFFILVIFHQ 331
+E+I++ NR+T K E S I V+ HQ
Sbjct: 2 EEIIVLFNRVTEKLEKDSAIRIFVLAHQ 29
>gi|123999|sp||IAMY_COILA_4 [Segment 4 of 6] ALPHA-AMYLASE
INHIBITOR/ENDOCHITINASE
Length = 76
Frame 1 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | | 76
0 20 40 60
Plus Strand HSPs:
Score = 61 (21.5 bits), Expect = 5.6, P = 1.0
Identities = 18/55 (32%), Positives = 22/55 (40%), Frame = +1
Query: 55 SAETQPPILPLPVTSRPSYRPGVAPIQIHHGYNYRGRGRGRGTGGLHPVTKFTED 219
+A P P + Y G PIQI YNY GR G GL + +D
Sbjct: 2 NAYCDPSKTQKPCAAGKKYY-GRGPIQISXNYNYGPAGRAIGMDGLGNPDRVAQD 55
>gi|2323295|gb|AAB66534.1| (AF010418) ORF-2 [Hepatitis E virus]
Length = 39
Frame 1 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | 39
0 20
Plus Strand HSPs:
Score = 38 (13.4 bits), Expect = 8.6, Sum P(2) = 1.0
Identities = 7/14 (50%), Positives = 10/14 (71%), Frame = +1
Query: 73 PILPLPVTSRPSYR 114
P+LP P + +PS R
Sbjct: 15 PMLPAPPSGQPSGR 28
Score = 36 (12.7 bits), Expect = 8.6, Sum P(2) = 1.0
Identities = 7/10 (70%), Positives = 8/10 (80%), Frame = +1
Query: 160 GRGRGRGTGG 189
GR RGR +GG
Sbjct: 27 GRRRGRRSGG 36
>gi|2323299|gb|AAB66537.1| (AF010419) ORF-2 [Hepatitis E virus]
>gi|2323303|gb|AAB66540.1| (AF010420) ORF-2 [Hepatitis E virus]
Length = 39
Frame 1 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | 39
0 20
Plus Strand HSPs:
Score = 38 (13.4 bits), Expect = 8.6, Sum P(2) = 1.0
Identities = 7/14 (50%), Positives = 10/14 (71%), Frame = +1
Query: 73 PILPLPVTSRPSYR 114
P+LP P + +PS R
Sbjct: 15 PMLPAPPSGQPSGR 28
Score = 36 (12.7 bits), Expect = 8.6, Sum P(2) = 1.0
Identities = 7/10 (70%), Positives = 8/10 (80%), Frame = +1
Query: 160 GRGRGRGTGG 189
GR RGR +GG
Sbjct: 27 GRRRGRRSGG 36
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.96
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.361 0.158 0.584
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.351 0.155 0.535
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.330 0.145 0.466
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.352 0.156 0.536
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.348 0.153 0.574
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.354 0.159 0.569
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 160 156 10. 74 3 12 22 0.097 34
30 0.12 36
+2 0 161 157 10. 74 3 12 22 0.098 34
30 0.12 36
+1 0 161 156 10. 74 3 12 22 0.097 34
30 0.12 36
-1 0 161 156 10. 74 3 12 22 0.097 34
30 0.12 36
-2 0 161 156 10. 74 3 12 22 0.097 34
30 0.12 36
-3 0 160 154 10. 74 3 12 22 0.095 34
30 0.12 36
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 15
No. of states in DFA: 590 (58 KB)
Total size of DFA: 191 KB (192 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 155.82u 1.17s 156.99t Elapsed: 00:00:26
Total cpu time: 155.84u 1.20s 157.04t Elapsed: 00:00:26
Start: Mon Oct 1 22:22:33 2001 End: Mon Oct 1 22:22:59 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000