R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|9758410|dbj|BAB08952.1| (AB006700) lysine decarboxylase-like protein
[Arabidopsis thaliana]
Length = 217
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | | 217
0 50 100 150 200
Plus Strand HSPs:
Score = 361 (127.1 bits), Expect = 4.2e-32, P = 4.2e-32
Identities = 68/93 (73%), Positives = 80/93 (86%), Frame = +2
Query: 170 MMKSSSRFRRICVFCGTSPGKNPSYQLAAIQLAKQLVERNIDLVYGGGSIGLMGLISQVV 349
M ++ SRF+RICVFCG+S GK PSYQ AAIQL +LVER IDLVYGGGS+GLMGL+SQ V
Sbjct: 1 MEETKSRFKRICVFCGSSSGKKPSYQEAAIQLGNELVERRIDLVYGGGSVGLMGLVSQAV 60
Query: 350 FDGGRHVLGVIPTTLMPREITGESVGEVESVGE 448
GGRHVLGVIP TLMPREITGE++GEV++V +
Sbjct: 61 HHGGRHVLGVIPKTLMPREITGETIGEVKAVAD 93
>gi|11357791|pir||T45885 hypothetical protein F4P12.150 - Arabidopsis thaliana
>gi|6729496|emb|CAB67652.1| (AL132966) putative protein
[Arabidopsis thaliana]
Length = 215
Frame 2 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | | | 215
0 50 100 150 200
Plus Strand HSPs:
Score = 345 (121.4 bits), Expect = 2.1e-30, P = 2.1e-30
Identities = 68/103 (66%), Positives = 81/103 (78%), Frame = +2
Query: 140 MEIEEQTMKMMMKSSSRFRRICVFCGTSPGKNPSYQLAAIQLAKQLVERNIDLVYGGGSI 319
ME+ +TM+ S+F RICVFCG+S GK SYQ AA+ L +LV RNIDLVYGGGSI
Sbjct: 1 MEVNNETMQ-----KSKFGRICVFCGSSQGKKSSYQDAAVDLGNELVLRNIDLVYGGGSI 55
Query: 320 GLMGLISQVVFDGGRHVLGVIPTTLMPREITGESVGEVESVGE 448
GLMGL+SQ V DGGRHV+GVIP TLMPRE+TGE+VGEV +V +
Sbjct: 56 GLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVRAVAD 98
>gi|10140743|gb|AAG13575.1|AC037425_6 (AC037425) unknown protein [Oryza sativa]
Length = 204
Frame 2 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | | | 204
0 50 100 150 200
Plus Strand HSPs:
Score = 325 (114.4 bits), Expect = 2.7e-28, P = 2.7e-28
Identities = 63/88 (71%), Positives = 73/88 (82%), Frame = +2
Query: 185 SRFRRICVFCGTSPGKNPSYQLAAIQLAKQLVERNIDLVYGGGSIGLMGLISQVVFDGGR 364
SRF+RICVFCG+S GK SY AAI+L +LV R+IDLVYGGGSIGLMGL+SQ VFDGGR
Sbjct: 4 SRFKRICVFCGSSQGKKRSYHDAAIELGNELVARSIDLVYGGGSIGLMGLVSQAVFDGGR 63
Query: 365 HVLGVIPTTLMPREITGESVGEVESVGE 448
HV+GVIP TLM EI+GE+VGEV V +
Sbjct: 64 HVIGVIPKTLMTPEISGETVGEVRPVAD 91
>gi|11358493|pir||T48554 lysine decarboxylase-like protein - Arabidopsis
thaliana >gi|7573362|emb|CAB87668.1| (AL163812) lysine
decarboxylase-like protein [Arabidopsis thaliana]
Length = 215
Frame 2 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | | 215
0 50 100 150 200
Plus Strand HSPs:
Score = 284 (100.0 bits), Expect = 6.0e-24, P = 6.0e-24
Identities = 54/88 (61%), Positives = 69/88 (78%), Frame = +2
Query: 185 SRFRRICVFCGTSPGKNPSYQLAAIQLAKQLVERNIDLVYGGGSIGLMGLISQVVFDGGR 364
SRFR+ICVFCG+ G + AAI+L +LV+R IDLVYGGGS+GLMGLIS+ V++GG
Sbjct: 7 SRFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGL 66
Query: 365 HVLGVIPTTLMPREITGESVGEVESVGE 448
HVLG+IP LMP EI+GE+VG+V V +
Sbjct: 67 HVLGIIPKALMPIEISGETVGDVRVVAD 94
>gi|11358492|pir||T48348 lysine decarboxylase-like protein - Arabidopsis
thaliana >gi|7413604|emb|CAB86094.1| (AL163002) lysine
decarboxylase-like protein [Arabidopsis thaliana]
Length = 229
Frame 2 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | | 229
0 50 100 150 200
Plus Strand HSPs:
Score = 267 (94.0 bits), Expect = 3.8e-22, P = 3.8e-22
Identities = 61/114 (53%), Positives = 73/114 (64%), Frame = +2
Query: 140 MEIEEQTMKMMMKSSSRFRRICVFCGTSPGKNPSYQLAAIQLAKQLVERNIDLVYGGGSI 319
ME EE +M K SSRF+ ICVFCG+S G SYQ AAI LAK+LV R IDLVYGGGSI
Sbjct: 1 MENEEGKREMTKKQSSRFKSICVFCGSSNGNKASYQDAAIDLAKELVMRKIDLVYGGGSI 60
Query: 320 GLMGLISQVVFDGGRH-----------VLGVIPTTLMPREITGESVGEVESVGE 448
GLMGL+SQ V DGGRH + + ++TGE+VGEV+ V +
Sbjct: 61 GLMGLVSQAVHDGGRHNNNNNGNDDALFCHSVNVSQTNSKLTGETVGEVKEVAD 114
>gi|4371280|gb|AAD18138.1| (AC006260) hypothetical protein [Arabidopsis
thaliana]
Length = 178
Frame 2 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | | 178
0 50 100 150
Plus Strand HSPs:
Score = 261 (91.9 bits), Expect = 1.6e-21, P = 1.6e-21
Identities = 58/103 (56%), Positives = 71/103 (68%), Frame = +2
Query: 140 MEIEEQTMKMMMKSSSRFRRICVFCGTSPGKNPSYQLAAIQLAKQLVERNIDLVYGGGSI 319
MEI+ ++M+ S+FRRICVFCG+S GK SYQ AA+ L +LV RNIDLVYGGGSI
Sbjct: 1 MEIKGESMQ-----KSKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSI 55
Query: 320 GLMGLISQVVFDGGRHVLGVIPTTLMPREITGESVGEVESVGE 448
GLMGL+SQ V DGGRH +TGE+VGEV +V +
Sbjct: 56 GLMGLVSQAVHDGGRH-------------LTGETVGEVRAVAD 85
>gi|4510370|gb|AAD21458.1| (AC007017) unknown protein [Arabidopsis thaliana]
Length = 181
Frame 2 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | 181
0 50 100 150
Plus Strand HSPs:
Score = 254 (89.4 bits), Expect = 9.1e-21, P = 9.1e-21
Identities = 50/70 (71%), Positives = 57/70 (81%), Frame = +2
Query: 170 MMKSSSRFRRICVFCGTSPGKNPSYQLAAIQLAKQLVERNIDLVYGGGSIGLMGLISQVV 349
M ++ SRFRRICVFCG+S G +Y AA+QLA QLVERNIDLVYGGGS+GLMGLISQ V
Sbjct: 1 MEETKSRFRRICVFCGSSSGNKTTYHDAALQLAHQLVERNIDLVYGGGSVGLMGLISQAV 60
Query: 350 FDGGRHVLGV 379
DGGR V+ V
Sbjct: 61 HDGGREVITV 70
>gi|9757778|dbj|BAB08387.1| (AB005240) lysine decarboxylase-like protein
[Arabidopsis thaliana]
Length = 220
Frame 2 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | | | 220
0 50 100 150 200
Plus Strand HSPs:
Score = 253 (89.1 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 57/105 (54%), Positives = 68/105 (64%), Frame = +2
Query: 167 MMMKSSSRFRRICVFCGTSPGKNPSYQLAAIQLAKQLVERNIDLVYGGGSIGLMGLISQV 346
M K SSRF+ ICVFCG+S G SYQ AAI LAK+LV R IDLVYGGGSIGLMGL+SQ
Sbjct: 1 MTKKQSSRFKSICVFCGSSNGNKASYQDAAIDLAKELVMRKIDLVYGGGSIGLMGLVSQA 60
Query: 347 VFDGGRH-----------VLGVIPTTLMPREITGESVGEVESVGE 448
V DGGRH + + ++TGE+VGEV+ V +
Sbjct: 61 VHDGGRHNNNNNGNDDALFCHSVNVSQTNSKLTGETVGEVKEVAD 105
>gi|12231051|sp|P48636|YDC3_PSEAE HYPOTHETICAL PROTEIN PA4923
>gi|11348257|pir||A83031 conserved hypothetical protein PA4923
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9951201|gb|AAG08308.1|AE004905_6 (AE004905) conserved
hypothetical protein [Pseudomonas aeruginosa]
Length = 195
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | 195
0 50 100 150
Plus Strand HSPs:
Score = 207 (72.9 bits), Expect = 8.7e-16, P = 8.7e-16
Identities = 38/83 (45%), Positives = 53/83 (63%), Frame = +2
Query: 194 RRICVFCGTSPGKNPSYQLAAIQLAKQLVERNIDLVYGGGSIGLMGLISQVVFDGGRHVL 373
R +CVFCG SPG +P YQ AA+ L + L ER + LVYGGG++GLMG ++ G V+
Sbjct: 4 RSVCVFCGASPGASPVYQEAAVALGRHLAERGLTLVYGGGAVGLMGTVADAALAAGGEVI 63
Query: 374 GVIPTTLMPREITGESVGEVESV 442
G+IP +L EI + + +E V
Sbjct: 64 GIIPQSLQEAEIGHKGLTRLEVV 86
>gi|7486909|pir||T04966 hypothetical protein T12J5.60 - Arabidopsis thaliana
>gi|4455345|emb|CAB36726.1| (AL035522) putative protein
[Arabidopsis thaliana] >gi|7270471|emb|CAB80236.1| (AL161587)
putative protein [Arabidopsis thaliana]
Length = 268
Frame 2 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | | | 268
0 50 100 150 200 250
Plus Strand HSPs:
Score = 202 (71.1 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 49/104 (47%), Positives = 62/104 (59%), Frame = +2
Query: 185 SRFRRICVFCGTSPGKNPSYQLAAIQLAKQLVE----------------RNIDLVYGGGS 316
SRF+R+CVFCG+S GK Y AA LA++LV R ++LVYGGGS
Sbjct: 6 SRFKRVCVFCGSSSGKRECYSDAATDLAQELVRLCLNLNESLENLKWVTRRLNLVYGGGS 65
Query: 317 IGLMGLISQVVFDGGRHVLGVIPTTLMPREITGESVGEVESVGE 448
IGLMGL+SQ V + G HVLG + ITGE+ GEV +V +
Sbjct: 66 IGLMGLVSQAVHEAGGHVLGYAQIYDLFTLITGETYGEVIAVAD 109
>gi|77664|pir||PQ0114 hypothetical protein (azu region) - Pseudomonas
aeruginosa (fragment) >gi|7251673|gb|AAA25729.2| (M30389) ORF1
[Pseudomonas aeruginosa]
Length = 71
Frame 2 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | | 71
0 20 40 60
Plus Strand HSPs:
Score = 197 (69.3 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 34/67 (50%), Positives = 46/67 (68%), Frame = +2
Query: 194 RRICVFCGTSPGKNPSYQLAAIQLAKQLVERNIDLVYGGGSIGLMGLISQVVFDGGRHVL 373
R +CVFCG SPG +P YQ AA+ L + L ER + LVYGGG++GLMG ++ G V+
Sbjct: 4 RSVCVFCGASPGASPVYQEAAVALGRHLAERGLTLVYGGGAVGLMGTVADAALAAGSEVI 63
Query: 374 GVIPTTL 394
G+IP +L
Sbjct: 64 GIIPQSL 70
>gi|7451099|pir||D70033 conserved hypothetical protein yvdD - Bacillus subtilis
>gi|1945663|emb|CAB08033.1| (Z94043) hypothetical protein [Bacillus
subtilis] >gi|2635977|emb|CAB15469.1| (Z99121) similar to
hypothetical proteins [Bacillus subtilis]
Length = 191
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | 191
0 50 100 150
Plus Strand HSPs:
Score = 167 (58.8 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 31/83 (37%), Positives = 51/83 (61%), Frame = +2
Query: 194 RRICVFCGTSPGKNPSYQLAAIQLAKQLVERNIDLVYGGGSIGLMGLISQVVFDGGRHVL 373
+ ICVF G++PG N +Y+ A +L + E+ I LVYGG +GLMG I+ + + G +
Sbjct: 2 KTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTAI 61
Query: 374 GVIPTTLMPREITGESVGEVESV 442
GV+P+ L E+ +++ E+ V
Sbjct: 62 GVMPSGLFSGEVVHQNLTELIEV 84
>gi|10175706|dbj|BAB06803.1| (AP001517) BH3084~unknown conserved protein
[Bacillus halodurans]
Length = 187
Frame 2 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | 187
0 50 100 150
Plus Strand HSPs:
Score = 165 (58.1 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 33/72 (45%), Positives = 46/72 (63%), Frame = +2
Query: 197 RICVFCGTSPGKNPSYQLAAIQLAKQLVERNIDLVYGGGSIGLMGLISQVVFDGGRHVLG 376
+I VFCG+S G + Y+ A QL K+L R I LVYGG S+G+MG ++ V + G V+G
Sbjct: 2 KIAVFCGSSNGASDVYKEGARQLGKELARRGITLVYGGASVGIMGAVADSVLEAGGEVIG 61
Query: 377 VIPTTLMPREIT 412
V+P L EI+
Sbjct: 62 VMPRFLEEPEIS 73
>gi|11280345|pir||T45176 conserved hypothetical protein ctf [imported] -
Mycobacterium leprae >gi|699154|gb|AAA62920.1| (U15180) ctf
[Mycobacterium leprae]
Length = 187
Frame 2 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | 187
0 50 100 150
Plus Strand HSPs:
Score = 144 (50.7 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 31/78 (39%), Positives = 43/78 (55%), Frame = +2
Query: 200 ICVFCGTSPGKNPSYQLAAIQLAKQLVERNIDLVYGGGSIGLMGLISQVVFDGGRHVLGV 379
ICVFC P +LAA +L + + ER LV+GGG + MG ++ + G ++GV
Sbjct: 13 ICVFCAAGPMHPELLELAA-ELGEAIAERGWTLVWGGGRVSAMGAVASAAWTRGGRIVGV 71
Query: 380 IPTTLMPREITGESVGEV 433
IP L REI VGE+
Sbjct: 72 IPEMLQRREIADTYVGEL 89
>gi|10175367|dbj|BAB06465.1| (AP001516) lysine decarboxylase [Bacillus
halodurans]
Length = 190
Frame 2 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | 190
0 50 100 150
Plus Strand HSPs:
Score = 144 (50.7 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 26/63 (41%), Positives = 43/63 (68%), Frame = +2
Query: 197 RICVFCGTSPGKNPSYQLAAIQLAKQLVERNIDLVYGGGSIGLMGLISQVVFDGGRHVLG 376
+IC+F G+S G++P Y L +Q+ ++ +++YGGG+ GLMG+++Q V D G V G
Sbjct: 2 KICLFSGSSLGQHPIYAEQVRALGEQIGKQGWEVIYGGGNAGLMGVLAQSVLDNGGRVTG 61
Query: 377 VIP 385
+IP
Sbjct: 62 IIP 64
>gi|1169649|sp|P46378|FAS6_RHOFA HYPOTHETICAL 21.1 KD PROTEIN IN FASCIATION
LOCUS (ORF6) >gi|1076047|pir||F55578 hypothetical protein 2 (ipt 3'
region) - Rhodococcus fascians plasmid pFiD188
>gi|455006|emb|CAA82746.1| (Z29635) orf6 [Rhodococcus fascians]
Length = 198
Frame 2 hits (HSPs): _________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 198
0 50 100 150
__________________
Annotated Domains:
DOMO DM06442: 1..197
PRODOM PD005712: YJF5(2) 20..160
PRODOM PD090879: FAS6_RHOFA 162..197
__________________
Plus Strand HSPs:
Score = 132 (46.5 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 24/64 (37%), Positives = 35/64 (54%), Frame = +2
Query: 194 RRICVFCGTSPGKNPSYQLAAIQLAKQLVERNIDLVYGGGSIGLMGLISQVVFDGGRHVL 373
+ + VFCG PG+ Y A + + + + LVYGG +GLMG ++ D G V+
Sbjct: 20 KSVTVFCGAMPGRGTKYGQLAEGMGRAIARSKLRLVYGGARVGLMGTLANAALDSGGTVV 79
Query: 374 GVIP 385
GVIP
Sbjct: 80 GVIP 83
>gi|4337446|gb|AAD18125.1| (U89166) ECORLD_ORF1; similar to the Pseudomonas
aeruginosa ORF upstream of the Azu gene and to the Rhodococcus
fascians fas operon ORF6 protein, encoded by GenBank Accession
Numbers M30388 and Z29635, respectively [Eikenella corrodens]
Length = 183
Frame 2 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | 183
0 50 100 150
Plus Strand HSPs:
Score = 122 (42.9 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 26/57 (45%), Positives = 33/57 (57%), Frame = +2
Query: 239 SYQLAAIQLAKQLVERNIDLVYGGGSIGLMGLISQVVFDGGRHVLGVIPTTLMPREI 409
SY AA +L + + ER LVYGGG IGLMG ++ G V G+IPT L E+
Sbjct: 1 SYSQAARELGRAIAERGSRLVYGGGGIGLMGEVASAALAAGGKVTGIIPTFLRHEEM 57
>gi|6322406 ref|NP_012480.1| Yjl055wp [Saccharomyces cerevisiae]
>gi|1352984|sp|P47044|YJF5_YEAST HYPOTHETICAL 26.9 KD PROTEIN IN
BTN1-PEP8 INTERGENIC REGION >gi|1077814|pir||S56827 conserved
hypothetical protein YJL055w - yeast (Saccharomyces cerevisiae)
>gi|1008195|emb|CAA89346.1| (Z49330) ORF YJL055w [Saccharomyces
cerevisiae]
Length = 245
Frame 2 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | 245
0 50 100 150 200
Plus Strand HSPs:
Score = 124 (43.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 30/82 (36%), Positives = 44/82 (53%), Frame = +2
Query: 194 RRICVFCGTSPGKNPSYQLAAIQLAKQLVERNIDLVYGGGSIGLMGLISQVVF--DGGRH 367
+ +CV+CG+S G Y +A +L + LVYGGG+ GLMG I++ D
Sbjct: 19 KSVCVYCGSSFGAKALYSESAEELGALFHKLGWKLVYGGGTTGLMGKIARSTMGPDLSGQ 78
Query: 368 VLGVIPTTLMPREITGESVGEV 433
V G+IP L+ +E T E +V
Sbjct: 79 VHGIIPNALVSKERTDEDKEDV 100
>gi|10954698 ref|NP_066633.1| similar to orf6 gene(unknown,in P450 operon) in
Rhodococcus fascians [Agrobacterium rhizogenes]
>gi|8918698|dbj|BAA97763.1| (AB039932) similar to orf6 gene in
Rhodococcus fascians [Agrobacterium rhizogenes]
>gi|10567362|dbj|BAB16171.1| (AP002086) similar to orf6
gene(unknown,in P450 operon) in Rhodococcus fascians [Agrobacterium
rhizogenes]
Length = 169
Frame 2 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | 169
0 50 100 150
Plus Strand HSPs:
Score = 106 (37.3 bits), Expect = 0.00013, P = 0.00013
Identities = 23/56 (41%), Positives = 30/56 (53%), Frame = +2
Query: 275 LVERNIDLVYGGGSIGLMGLISQVVFDGGRHVLGVIPTTLMPREITGESVGEVESV 442
+ I LVYGG SIGLMG I+ G V+GVIP L +EI + ++ V
Sbjct: 1 MARSGIGLVYGGASIGLMGAIADAARSDGGEVIGVIPRALAEKEIAHTDLADLRVV 56
>gi|7451100|pir||C70609 hypothetical protein Rv1205 - Mycobacterium
tuberculosis (strain H37RV) >gi|1929079|emb|CAB07828.1| (Z93777)
hypothetical protein Rv1205 [Mycobacterium tuberculosis]
Length = 187
Frame 2 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | 187
0 50 100 150
Plus Strand HSPs:
Score = 103 (36.3 bits), Expect = 0.0010, P = 0.0010
Identities = 24/78 (30%), Positives = 38/78 (48%), Frame = +2
Query: 200 ICVFCGTSPGKNPSYQLAAIQLAKQLVERNIDLVYGGGSIGLMGLISQVVFDGGRHVLGV 379
+ V+C SP +LAA ++ + R LV+GGG + MG ++ G +GV
Sbjct: 13 VAVYCAASPTHAELLELAA-EVGAAIAGRGWTLVWGGGHVSAMGAVASAARACGGWTVGV 71
Query: 380 IPTTLMPREITGESVGEV 433
IP L+ RE+ E+
Sbjct: 72 IPKMLVYRELADHDADEL 89
>gi|7462102|pir||A72302 conserved hypothetical protein - Thermotoga maritima
(strain MSB8) >gi|4981597|gb|AAD36132.1|AE001765_11 (AE001765)
conserved hypothetical protein [Thermotoga maritima]
Length = 171
Frame 2 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | 171
0 50 100 150
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 1.4, P = 0.74
Identities = 22/66 (33%), Positives = 39/66 (59%), Frame = +2
Query: 194 RRICVFCGTSP-GKNPSYQLAAI--QLAKQLVERNIDLVYGGGSIGLMGLISQVVFDGGR 364
+++ V + P K+P +L I +L + L ++ LV+ GG G+M L+SQ V + G
Sbjct: 2 KKVVVVGYSGPVNKSPVSELRDICLELGRTLAKKGY-LVFNGGRDGVMELVSQGVREAGG 60
Query: 365 HVLGVIP 385
V+G++P
Sbjct: 61 TVVGILP 67
>gi|12697620|dbj|BAB21615.1| (AB037974) cytochrome oxidase subunit I
[Thalassiosira nordenskioeldii]
Length = 57
Frame 2 hits (HSPs): ___________ ________________________
__________________________________________________
Database sequence: | | | | 57
0 20 40
Plus Strand HSPs:
Score = 41 (14.4 bits), Expect = 1.4, Sum P(2) = 0.75
Identities = 7/13 (53%), Positives = 9/13 (69%), Frame = +2
Query: 47 FFPHPSLYVHIHP 85
FF HP +Y+ I P
Sbjct: 1 FFGHPEVYILILP 13
Score = 40 (14.1 bits), Expect = 1.4, Sum P(2) = 0.75
Identities = 9/27 (33%), Positives = 16/27 (59%), Frame = +2
Query: 257 IQLAKQLVERNIDLVYGGGSIGLMGLI 337
+ AK+ + + +VY SIG++G I
Sbjct: 23 VSTAKKPIFGYLGMVYAMFSIGVLGFI 49
>gi|1196510|gb|AAA88231.1| (M15467) unknown protein [Mycobacterium
tuberculosis]
Length = 175
Frame -1 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | 175
0 50 100 150
Minus Strand HSPs:
Score = 76 (26.8 bits), Expect = 6.3, P = 1.0
Identities = 22/64 (34%), Positives = 32/64 (50%), Frame = -1
Query: 447 SPTLSTSPTLSPVISLG-IRVVGITPN-TWRPPSNTTCEIKPINPMLPPP*TKSMFLSTS 274
+P S T S S+ +R G+ P T R PS T + ++P P T S+FL+TS
Sbjct: 40 APLSRVSVTFSTAFSMPRLRPSGLAPAATLRRPSRTNAWASTVAVVVPSPATSSVFLATS 99
Query: 273 CLAS 262
+S
Sbjct: 100 LTSS 103
>gi|7479785|pir||T35807 hypothetical protein SC8D9.03 SC8D9.03 - Streptomyces
coelicolor >gi|4467242|emb|CAB37567.1| (AL035569) SC8D9.03,
unknown, len: 182aa; similar to many of undefined function eg.
TR:Q49952 (EMBL:U15180) hypothetical protein from Mycobacterium
leprae (187 aa) fasta scores; opt: 331, z-score: 394.0, E():
1.2e-14, (36.1% identity in 166 aa overlap)
Length = 182
Frame 2 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | 182
0 50 100 150
Plus Strand HSPs:
Score = 76 (26.8 bits), Expect = 6.8, P = 1.0
Identities = 20/60 (33%), Positives = 32/60 (53%), Frame = +2
Query: 200 ICVFCGTSPGKNPSYQLAAIQLAKQLVERNIDLVYGGGSIGLMGLISQVVFDGGRHVLGV 379
ICVF + + Y A + A+ L + LV+GG +GLM +++ V + G +LGV
Sbjct: 6 ICVFLSAAD-LDEHYTRPAKEFAELLGKGGHTLVWGGSDVGLMKVVADGVQESGGKLLGV 64
>gi|7451672|pir||H70312 hypothetical protein aq_134 - Aquifex aeolicus
>gi|2982880|gb|AAC06500.1| (AE000675) putative protein [Aquifex
aeolicus]
Length = 151
Frame 2 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | || 151
0 50 100 150
Plus Strand HSPs:
Score = 74 (26.0 bits), Expect = 7.6, P = 1.0
Identities = 19/65 (29%), Positives = 37/65 (56%), Frame = +2
Query: 194 RRICVFCGTSPGKNPSYQLAAIQLAKQLVERNIDLVYGGGSIGLMGLISQVVFDGGRHVL 373
R++ V G+S Y+ A +L K+L +RN+ +V GG + G+M + + + G +
Sbjct: 2 RQVSVI-GSSKASEEEYEFA-YRLGKELAKRNLVVVCGGRT-GVMEAVCKGAKEEGGLTI 58
Query: 374 GVIPT 388
G++P+
Sbjct: 59 GIMPS 63
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.98
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.358 0.155 0.599
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.335 0.148 0.458
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.340 0.148 0.550
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.341 0.150 0.525
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.347 0.151 0.548
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.351 0.154 0.571
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 149 148 10. 74 3 12 22 0.091 34
30 0.11 36
+2 0 149 148 10. 74 3 12 22 0.091 34
30 0.11 36
+1 0 150 149 10. 74 3 12 22 0.092 34
30 0.12 36
-1 0 150 149 10. 74 3 12 22 0.092 34
30 0.12 36
-2 0 149 149 10. 74 3 12 22 0.092 34
30 0.12 36
-3 0 149 148 10. 74 3 12 22 0.091 34
30 0.11 36
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 25
No. of states in DFA: 591 (58 KB)
Total size of DFA: 203 KB (256 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 164.72u 1.14s 165.86t Elapsed: 00:00:28
Total cpu time: 164.75u 1.20s 165.95t Elapsed: 00:00:28
Start: Fri Feb 1 22:11:31 2002 End: Fri Feb 1 22:11:59 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000