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Cancer Genome Anatomy Project |
| NCI > CGAP > GAI > SNPs > Summary Docs > Confirmed SNPs (any tissue) |
| SNP ID | Primer Set | UniGene | Description | Gene | Chr | Int | Genetic Location |
|---|---|---|---|---|---|---|---|
| Chromosome 1 | |||||||
| 2331 | 1428 | Hs.709241 | Solute carrier family 35, member E2 | SLC35E2 | 1 | 0 | 1pTER - D1S468 |
| 13861 | 19550 | Hs.462640 | DnaJ (Hsp40) homolog, subfamily C, member 11 | DNAJC11 | 1 | 2 | D1S468 - D1S228 |
| 51483 | 131515 | Hs.520094 | KIAA2013 | KIAA2013 | 1 | 2 | D1S214 - D1S228 |
| 15603 | 46228 | Hs.380857 | Regulator of chromosome condensation 2 | RCC2 | 1 | 3 | D1S228 - D1S199 |
| 2265 | 1395 | Hs.76884 | Inhibitor of DNA binding 3, dominant negative helix-loop-helix protein | ID3 | 1 | 4 | D1S199 - D1S234 |
| 58028 | 135290 | Hs.77448 | Aldehyde dehydrogenase 4 family, member A1 | ALDH4A1 | 1 | 4 | D1S228 - D1S234 |
| 15591 | 46223 | Hs.77897 | Splicing factor 3a, subunit 3, 60kDa | SF3A3 | 1 | 5 | D1S255 - D1S197 |
| 15631 | 46236 | Hs.175437 | Erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked) | EPB41 | 1 | 5 | D1S234 - D1S255 |
| 47704 | 131890 | Hs.10649 | Chromosome 1 open reading frame 38 | C1orf38 | 1 | 5 | D1S199 - D1S234 |
| 49966 | 131642 | Hs.427055 | Nuclear receptor subfamily 0, group B, member 2 | NR0B2 | 1 | 5 | D1S199 - D1S255 |
| 2305 | 1415 | Hs.456557 | Ring finger protein 220 | RNF220 | 1 | 6 | D1S255 - D1S220 |
| 12539 | 45339 | Hs.163424 | Fatty acid amide hydrolase | NSUN4 | 1 | 6 | D1S255 - D1S220 |
| 16503 | 46591 | Hs.163424 | Fatty acid amide hydrolase | NSUN4 | 1 | 6 | D1S197 - D1S220 |
| 17033 | 46807 | Hs.643560 | KIAA0467 | KIAA0467 | 1 | 6 | D1S255 - D1S197 |
| 62762 | 137918 | Hs.524690 | Peptidylprolyl isomerase E (cyclophilin E) | PPIE | 1 | 6 | D1S255 - D1S197 |
| 15391 | 46130 | Hs.498727 | 24-dehydrocholesterol reductase | DHCR24 | 1 | 7 | D1S197 - D1S220 |
| 12559 | 19467 | Hs.23581 | Transcribed locus | - | 1 | 9 | D1S209 - D1S216 |
| 2323 | 1424 | Hs.362728 | 15 kDa selenoprotein | SEP15 | 1 | 11 | D1S207 - D1S424 |
| 2325 | 1425 | Hs.362728 | 15 kDa selenoprotein | SEP15 | 1 | 11 | D1S207 - D1S424 |
| 52701 | 133243 | Hs.467411 | Transcribed locus | - | 1 | 13 | D1S206 - D1S502 |
| 2383 | 1454 | Hs.514934 | Capping protein (actin filament) muscle Z-line, alpha 1 | CAPZA1 | 1 | 14 | D1S206 - D1S252 |
| 16563 | 46617 | Hs.69855 | Cold shock domain containing E1, RNA-binding | CSDE1 | 1 | 14 | D1S498 - D1S484 |
| 48619 | 133396 | Hs.50732 | Protein kinase, AMP-activated, beta 2 non-catalytic subunit | PRKAB2 | 1 | 15 | D1S502 - D1S252 |
| 53233 | 133473 | Hs.54680 | Chromosome 1 open reading frame 51 | C1orf51 | 1 | 15 | D1S252 - D1S484 |
| 13009 | 45269 | Hs.32018 | SNAP-associated protein | SNAPIN | 1 | 16 | D1S498 - D1S484 |
| 52959 | 133267 | Hs.517232 | Peroxisomal biogenesis factor 19 | PEX19 | 1 | 16 | D1S484 - D1S196 |
| 59536 | 136065 | Hs.119825 | Spectrin, alpha, erythrocytic 1 (elliptocytosis 2) | SPTA1 | 1 | 16 | D1S498 - D1S484 |
| 57467 | 135017 | Hs.433300 | Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide | FCER1G | 1 | 17 | D1S498 - D1S484 |
| 62267 | 137521 | Hs.493919 | Myelin protein zero-like 1 | MPZL1 | 1 | 18 | D1S196 - D1S218 |
| 71129 | 213900 | Hs.518138 | KIAA0040 | KIAA0040 | 1 | 18 | D1S196 - D1S238 |
| 59622 | 136219 | Hs.497159 | Chromosome 1 open reading frame 21 | C1orf21 | 1 | 19 | D1S218 - D1S238 |
| 2341 | 1433 | Hs.343522 | ATPase, Ca++ transporting, plasma membrane 4 | ATP2B4 | 1 | 21 | D1S413 - D1S425 |
| 12569 | 19503 | Hs.444403 | Protein phosphatase 1, regulatory (inhibitor) subunit 12B | PPP1R12B | 1 | 21 | D1S413 - D1S249 |
| 2401 | 1463 | Hs.511425 | Signal recognition particle 9kDa | SRP9 | 1 | 23 | D1S425 - D1S213 |
| 13059 | 19429 | Hs.523968 | Tumor protein p53 binding protein, 2 | TP53BP2 | 1 | 24 | D1S425 - D1S235 |
| 15045 | 46006 | Hs.533192 | Translocase of outer mitochondrial membrane 20 homolog (yeast) | TOMM20 | 1 | 24 | D1S213 - D1S423 |
| 48685 | 131632 | Hs.119387 | Transmembrane protein 63A | TMEM63A | 1 | 24 | D1S213 - D1S235 |
| 52390 | 132655 | Hs.4082 | Lectin, galactoside-binding, soluble, 8 | LGALS8 | 1 | 24 | D1S235 - D1S423 |
| 59432 | 136007 | Hs.356377 | Ring finger protein 187 | RNF187 | 1 | 24 | D1S425 - D1S235 |
| 60814 | 136751 | Hs.647774 | Ras homolog gene family, member U | RHOU | 1 | 24 | D1S425 - D1S213 |
| Chromosome 2 | |||||||
| 13355 | 19570 | Hs.369574 | CDC42 effector protein (Rho GTPase binding) 3 | CDC42EP3 | 2 | 7 | D2S367 - D2S391 |
| 62398 | 137609 | Hs.59332 | Sprouty-related, EVH1 domain containing 2 | SPRED2 | 2 | 9 | D2S337 - D2S285 |
| 2269 | 1397 | Hs.449621 | Major histocompatibility complex, class I, C | HLA-C | 2 | 12 | D2S113 - D2S160 |
| 12597 | 43393 | Hs.469376 | Transmembrane protein 131 | TMEM131 | 2 | 13 | D2S139 - D2S160 |
| 59954 | 136288 | Hs.175043 | Cyclin M4 | CNNM4 | 2 | 13 | D2S286 - D2S113 |
| 52991 | 133617 | Hs.81134 | Interleukin 1 receptor antagonist | IL1RN | 2 | 14 | D2S160 - D2S347 |
| 56836 | 134645 | Hs.470654 | Cell division cycle associated 7 | CDCA7 | 2 | 18 | D2S142 - D2S364 |
| 62295 | 137536 | Hs.654534 | Chimerin (chimaerin) 1 | CHN1 | 2 | 19 | D2S326 - D2S364 |
| 13089 | 19534 | Hs.714856 | CDNA FLJ31108 fis, clone IMR322000164 | - | 2 | 20 | D2S364 - D2S325 |
| 50369 | 132942 | Hs.149252 | Carbamoyl-phosphate synthetase 1, mitochondrial | CPS1 | 2 | 22 | D2S325 - D2S126 |
| 12059 | 43350 | Hs.283610 | ATG4 autophagy related 4 homolog B (S. cerevisiae) | ATG4B | 2 | 28 | D2S125 - 2qTER |
| 52316 | 131916 | Hs.5345 | Arginyl aminopeptidase (aminopeptidase B)-like 1 | RNPEPL1 | 2 | 28 | D2S125 - 2qTER |
| Chromosome 3 | |||||||
| 50920 | 133358 | Hs.591666 | Makorin ring finger protein 2 | MKRN2 | 3 | 3 | D3S1304 - D3S1263 |
| 13129 | 45077 | Hs.82116 | Myeloid differentiation primary response gene (88) | MYD88 | 3 | 6 | 3pTER - D3S1289 |
| 15493 | 46180 | Hs.76686 | Glutathione peroxidase 1 | GPX1 | 3 | 6 | D3S1298 - D3S1289 |
| 54272 | 131343 | Hs.348500 | Vasoactive intestinal peptide receptor 1 | VIPR1 | 3 | 6 | D3S1298 - D3S1289 |
| 57141 | 134768 | Hs.631910 | RFT1 homolog (S. cerevisiae) | RFT1 | 3 | 6 | D3S1298 - D3S1300 |
| 12311 | 19495 | Hs.476448 | Filamin B, beta (actin binding protein 278) | FLNB | 3 | 7 | D3S1289 - D3S1300 |
| 13529 | 45279 | Hs.708240 | Abhydrolase domain containing 10 | ABHD10 | 3 | 12 | D3S1271 - D3S1267 |
| 2415 | 1470 | Hs.269512 | Follistatin-like 1 | FSTL1 | 3 | 13 | D3S1278 - D3S1267 |
| 12487 | 45261 | Hs.8944 | Procollagen C-endopeptidase enhancer 2 | PCOLCE2 | 3 | 15 | D3S1292 - D3S1279 |
| 14201 | 45647 | Hs.518326 | Stress-associated endoplasmic reticulum protein 1 | SERP1 | 3 | 16 | D3S1569 - D3S1614 |
| 12333 | 42139 | Hs.368563 | ATP-binding cassette, sub-family C (CFTR/MRP), member 5 | ABCC5 | 3 | 19 | D3S1565 - D3S1262 |
| 52577 | 131957 | Hs.439060 | Claudin 1 | CLDN1 | 3 | 21 | D3S1580 - D3S1311 |
| 14843 | 45915 | Hs.591671 | Nuclear cap binding protein subunit 2, 20kDa | NCBP2 | 3 | 22 | D3S1311 - 3qTER |
| 60963 | 136831 | Hs.591384 | Zinc finger and BTB domain containing 7A | ZBTB7A | 3 | 22 | D3S1311 - 3qTER |
| Chromosome 4 | |||||||
| 12079 | 42142 | Hs.707307 | Transcribed locus | - | 4 | 0 | 4pTER - D4S412 |
| 13067 | 42107 | Hs.78068 | Carboxypeptidase Z | CPZ | 4 | 2 | D4S419 - D4S391 |
| 56783 | 134716 | Hs.479634 | Solute carrier family 30 (zinc transporter), member 9 | SLC30A9 | 4 | 5 | D4S428 - D4S392 |
| 65981 | 210384 | Hs.476517 | Family with sequence similarity 114, member A1 | FAM114A1 | 4 | 5 | D4S405 - D4S398 |
| 57135 | 134766 | Hs.668532 | Transcribed locus | - | 4 | 6 | D4S428 - D4S392 |
| 61899 | 137365 | Hs.438953 | Sarcoglycan, beta (43kDa dystrophin-associated glycoprotein) | SGCB | 4 | 6 | D4S428 - D4S398 |
| 59845 | 136214 | Hs.373642 | PR domain containing 8 | PRDM8 | 4 | 8 | D4S1534 - D4S414 |
| 60812 | 136750 | Hs.660738 | Transcribed locus | - | 4 | 8 | D4S392 - D4S1534 |
| 59339 | 135962 | Hs.666934 | Transcribed locus | - | 4 | 9 | D4S1534 - D4S414 |
| 49360 | 133102 | Hs.556638 | CDGSH iron sulfur domain 2 | CISD2 | 4 | 11 | D4S1572 - D4S402 |
| 12563 | 42111 | Hs.480653 | Annexin A5 | ANXA5 | 4 | 12 | D4S402 - D4S1575 |
| Chromosome 5 | |||||||
| 53854 | 131934 | Hs.13885 | Mediator complex subunit 10 | MED10 | 5 | 0 | D5S406 - D5S630 |
| 12857 | 43406 | Hs.1600 | Chaperonin containing TCP1, subunit 5 (epsilon) | CCT5 | 5 | 2 | D5S406 - D5S416 |
| 16255 | 46490 | Hs.75189 | Death-associated protein | DAP | 5 | 2 | D5S630 - D5S416 |
| 12601 | 43405 | Hs.481980 | Disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila) | DAB2 | 5 | 6 | D5S426 - D5S407 |
| 58290 | 135417 | Hs.644352 | Pelota homolog (Drosophila) | PELO | 5 | 6 | D5S426 - D5S407 |
| 16715 | 46677 | Hs.41707 | Heat shock 27kDa protein 3 | HSPB3 | 5 | 7 | D5S407 - D5S647 |
| 48359 | 133347 | Hs.482491 | Mitochondrial ribosomal protein S27 | MRPS27 | 5 | 8 | D5S647 - D5S424 |
| 13943 | 45550 | Hs.654973 | CDNA FLJ42149 fis, clone THYMU1000692 | - | 5 | 11 | D5S428 - D5S644 |
| 61978 | 137345 | Hs.288741 | Ephrin-A5 | EFNA5 | 5 | 12 | D5S433 - D5S421 |
| 12005 | 45299 | Hs.483564 | Prefoldin subunit 1 | PFDN1 | 5 | 15 | D5S471 - D5S436 |
| 13971 | 45564 | Hs.163867 | CD14 molecule | CD14 | 5 | 15 | D5S393 - D5S436 |
| 2243 | 1384 | Hs.543850 | TNFAIP3 interacting protein 1 | TNIP1 | 5 | 16 | D5S436 - D5S422 |
| 12325 | 19544 | Hs.711787 | Clathrin interactor 1 | CLINT1 | 5 | 17 | D5S673 - D5S422 |
| 53066 | 131809 | Hs.179852 | Ubiquitin domain containing 2 | UBTD2 | 5 | 19 | D5S422 - D5S400 |
| 12643 | 45116 | Hs.699155 | Calnexin | CANX | 5 | 21 | D5S429 - D5S408 |
| Chromosome 6 | |||||||
| 61705 | 137235 | Hs.715105 | Transcribed locus | - | 6 | 1 | D6S344 - D6S470 |
| 12837 | 42128 | Hs.181244 | Major histocompatibility complex, class I, A | HLA-A | 6 | 5 | D6S276 - D6S426 |
| 15463 | 46156 | Hs.714425 | Transcribed locus, moderately similar to XP_001236035.1 PREDICTED: similar to Tubulin beta-5 chain (Beta-tubulin class-V), partial [Gallus gallus] | - | 6 | 5 | D6S470 - D6S257 |
| 62302 | 137540 | Hs.376046 | Butyrophilin, subfamily 3, member A2 | BTN3A2 | 6 | 5 | D6S422 - D6S426 |
| 52004 | 131576 | Hs.180197 | Testis development related protein 1 | TDRG1 | 6 | 6 | D6S276 - D6S271 |
| 69159 | 212165 | Hs.440900 | HLA-B associated transcript 3 | BAT3 | 6 | 6 | D6S422 - D6S426 |
| 59546 | 136070 | Hs.149387 | Myosin VI | MYO6 | 6 | 9 | D6S257 - D6S462 |
| 2311 | 1418 | Hs.708219 | Transcribed locus | - | 6 | 12 | D6S287 - D6S262 |
| 59766 | 136175 | Hs.432656 | CDNA clone IMAGE:40125989 | - | 6 | 15 | D6S308 - D6S441 |
| 2357 | 1441 | Hs.416998 | Mitochondrial ribosomal protein L18 | MRPL18 | 6 | 16 | D6S441 - D6S264 |
| 65088 | 139110 | Hs.363137 | T-complex 1 | TCP1 | 6 | 16 | D6S441 - D6S264 |
| Chromosome 7 | |||||||
| 57342 | 134968 | Hs.487341 | Guanine nucleotide binding protein (G protein) alpha 12 | GNA12 | 7 | 0 | 7pTER - D7S517 |
| 2257 | 1391 | Hs.190495 | Glycoprotein (transmembrane) nmb | GPNMB | 7 | 4 | D7S493 - D7S516 |
| 60183 | 136410 | Hs.520708 | Deafness, autosomal dominant 5 | DFNA5 | 7 | 5 | D7S516 - D7S484 |
| 55830 | 134180 | Hs.103934 | FK506 binding protein 9, 63 kDa | FKBP9 | 7 | 7 | D7S484 - D7S510 |
| 2421 | 1473 | Hs.354056 | P450 (cytochrome) oxidoreductase | POR | 7 | 9 | D7S519 - D7S657 |
| 12071 | 19551 | Hs.644777 | Transcribed locus | - | 7 | 9 | 7pTER - D7S531 |
| 55743 | 134221 | Hs.520967 | Malate dehydrogenase 2, NAD (mitochondrial) | MDH2 | 7 | 9 | D7S519 - D7S657 |
| 56317 | 134470 | Hs.279696 | Sulfatase modifying factor 2 | SUMF2 | 7 | 9 | D7S517 - D7S669 |
| 13605 | 42130 | Hs.119882 | Cyclin-dependent kinase 6 | CDK6 | 7 | 11 | D7S669 - D7S657 |
| 48800 | 132584 | Hs.567438 | Brain protein I3 | BRI3 | 7 | 11 | D7S657 - D7S515 |
| 2359 | 1442 | Hs.117929 | Hypothetical LOC401397 | LOC401397 | 7 | 12 | D7S515 - D7S530 |
| 12573 | 19517 | Hs.643548 | Ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) | UBE2H | 7 | 14 | D7S486 - D7S640 |
| 13701 | 45165 | Hs.490181 | Solute carrier family 35, member B4 | SLC35B4 | 7 | 14 | D7S530 - D7S684 |
| Chromosome 8 | |||||||
| 2263 | 1394 | Hs.593928 | Farnesyl-diphosphate farnesyltransferase 1 | FDFT1 | 8 | 3 | D8S550 - D8S258 |
| 52869 | 132298 | Hs.593928 | Farnesyl-diphosphate farnesyltransferase 1 | FDFT1 | 8 | 3 | D8S277 - D8S258 |
| 2363 | 1444 | Hs.173381 | Dihydropyrimidinase-like 2 | DPYSL2 | 8 | 4 | D8S258 - D8S283 |
| 13853 | 19521 | Hs.445512 | Coiled-coil domain containing 25 | CCDC25 | 8 | 4 | D8S258 - D8S283 |
| 13867 | 19572 | Hs.445512 | Coiled-coil domain containing 25 | CCDC25 | 8 | 4 | D8S258 - D8S283 |
| 17177 | 46864 | Hs.173381 | Dihydropyrimidinase-like 2 | DPYSL2 | 8 | 4 | D8S258 - D8S283 |
| 53323 | 131820 | Hs.148342 | Polymerase (RNA) III (DNA directed) polypeptide D, 44kDa | POLR3D | 8 | 4 | D8S258 - D8S283 |
| 58768 | 135657 | Hs.131226 | BCL2/adenovirus E1B 19kDa interacting protein 3-like | BNIP3L | 8 | 4 | D8S258 - D8S283 |
| 49135 | 133440 | Hs.241576 | Der1-like domain family, member 1 | DERL1 | 8 | 10 | D8S556 - D8S284 |
| Chromosome 9 | |||||||
| 64407 | 138417 | Hs.194121 | RNA terminal phosphate cyclase-like 1 | RCL1 | 9 | 0 | 9pTER - D9S288 |
| 12001 | 45289 | Hs.493819 | GLI pathogenesis-related 2 | GLIPR2 | 9 | 5 | D9S161 - D9S273 |
| 60192 | 136416 | Hs.567229 | Aconitase 1, soluble | ACO1 | 9 | 5 | D9S161 - D9S273 |
| 13297 | 45327 | Hs.24030 | Solute carrier family 31 (copper transporters), member 2 | SLC31A2 | 9 | 10 | D9S287 - D9S279 |
| 2249 | 1387 | Hs.253903 | Stomatin | STOM | 9 | 11 | D9S279 - D9S290 |
| 2293 | 1409 | Hs.522356 | Orosomucoid 1 | ORM1 | 9 | 11 | D9S279 - D9S290 |
| 58840 | 135702 | Hs.495138 | Mitogen-activated protein kinase associated protein 1 | MAPKAP1 | 9 | 11 | D9S279 - D9S290 |
| 13851 | 19514 | Hs.512465 | Surfeit 4 | SURF4 | 9 | 12 | D9S290 - D9S158 |
| 16639 | 46650 | Hs.642946 | Frequenin homolog (Drosophila) | FREQ | 9 | 12 | D9S164 - D9S158 |
| 64967 | 139047 | Hs.553160 | Growth factor independent 1B transcription repressor | GFI1B | 9 | 12 | D9S290 - D9S158 |
| Chromosome 10 | |||||||
| 13885 | 45523 | Hs.4055 | Kruppel-like factor 6 | KLF6 | 10 | 1 | D10S249 - D10S591 |
| 58827 | 135696 | Hs.385493 | Chromosome 10 open reading frame 128 | C10orf128 | 10 | 8 | D10S208 - D10S561 |
| 48449 | 131751 | Hs.279580 | KIAA1279 | KIAA1279 | 10 | 10 | D10S561 - D10S537 |
| 12235 | 45264 | Hs.535295 | Transcribed locus | - | 10 | 11 | D10S561 - D10S537 |
| 16433 | 46561 | Hs.643030 | Lipase A, lysosomal acid, cholesterol esterase | LIPA | 10 | 12 | D10S561 - D10S201 |
| 49191 | 131593 | Hs.643960 | Transcribed locus | - | 10 | 12 | D10S201 - D10S583 |
| 2377 | 1451 | Hs.368525 | PDZ and LIM domain 1 | PDLIM1 | 10 | 13 | D10S583 - D10S192 |
| 13587 | 43341 | Hs.25300 | Phosphatidylinositol 4-kinase type 2 alpha | PI4K2A | 10 | 13 | D10S583 - D10S192 |
| 59887 | 136253 | Hs.150087 | ER lipid raft associated 1 | ERLIN1 | 10 | 13 | D10S583 - D10S597 |
| 72721 | 214220 | Hs.404568 | Hermansky-Pudlak syndrome 1 | HPS1 | 10 | 13 | D10S583 - D10S192 |
| 2245 | 1385 | Hs.153961 | ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) | ACTR1A | 10 | 14 | D10S583 - D10S597 |
| 53975 | 133182 | Hs.602894 | Transcribed locus | - | 10 | 14 | D10S583 - D10S192 |
| 55568 | 134052 | Hs.596992 | Transcribed locus | - | 10 | 16 | D10S190 - D10S587 |
| Chromosome 11 | |||||||
| 62478 | 137658 | Hs.19121 | Adaptor-related protein complex 2, alpha 2 subunit | AP2A2 | 11 | 0 | 11pTER - D11S922 |
| 12143 | 45134 | Hs.705584 | Transcribed locus | - | 11 | 1 | D11S922 - D11S902 |
| 13109 | 43395 | Hs.523454 | Tripeptidyl peptidase I | TPP1 | 11 | 1 | D11S922 - D11S902 |
| 49921 | 131347 | Hs.705584 | Transcribed locus | - | 11 | 1 | D11S922 - D11S1338 |
| 52551 | 131790 | Hs.523470 | Importin 7 | IPO7 | 11 | 2 | D11S922 - D11S902 |
| 57326 | 134961 | Hs.649389 | Hypothetical protein LOC729013 | LOC729013 | 11 | 2 | D11S1338 - D11S902 |
| 63178 | 138681 | Hs.502100 | Transmembrane protein 86A | TMEM86A | 11 | 3 | D11S902 - D11S904 |
| 71361 | 213784 | Hs.278573 | CD59 molecule, complement regulatory protein | CD59 | 11 | 4 | D11S904 - D11S935 |
| 15213 | 46069 | Hs.503022 | SAPS domain family, member 3 | SAPS3 | 11 | 8 | D11S987 - D11S1314 |
| 11967 | 45248 | Hs.523936 | Prolylcarboxypeptidase (angiotensinase C) | PRCP | 11 | 10 | D11S937 - D11S1358 |
| 51491 | 131570 | Hs.248153 | Calpain 5 | CAPN5 | 11 | 10 | D11S937 - D11S901 |
| 57771 | 135150 | Hs.98523 | FAT tumor suppressor homolog 3 (Drosophila) | FAT3 | 11 | 11 | D11S901 - D11S1358 |
| 2275 | 1400 | Hs.83169 | Matrix metallopeptidase 1 (interstitial collagenase) | MMP1 | 11 | 13 | D11S1358 - D11S908 |
| 2295 | 1410 | Hs.73849 | Apolipoprotein C-III | APOC3 | 11 | 14 | D11S908 - D11S1345 |
| 12067 | 19537 | Hs.504062 | Pleckstrin homology-like domain, family B, member 1 | PHLDB1 | 11 | 14 | D11S908 - D11S1345 |
| 12249 | 45278 | Hs.504062 | Pleckstrin homology-like domain, family B, member 1 | PHLDB1 | 11 | 14 | D11S908 - D11S1345 |
| 50524 | 131914 | Hs.524081 | Dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) | DPAGT1 | 11 | 14 | D11S908 - D11S1345 |
| 2291 | 1408 | Hs.591936 | Signal recognition particle receptor ('docking protein') | SRPR | 11 | 16 | D11S1345 - D11S1320 |
| Chromosome 12 | |||||||
| 2419 | 1472 | Hs.356604 | WNK lysine deficient protein kinase 1 | WNK1 | 12 | 0 | D12S352 - D12S99 |
| 13577 | 19451 | Hs.631659 | CD4 molecule | CD4 | 12 | 2 | D12S99 - D12S336 |
| 51598 | 132391 | Hs.521817 | Transcribed locus, strongly similar to XP_001721967.1 PREDICTED: hypothetical protein [Homo sapiens] | - | 12 | 2 | D12S99 - D12S364 |
| 2319 | 1422 | Hs.505136 | Importin 8 | IPO8 | 12 | 5 | D12S310 - D12S345 |
| 12345 | 43404 | Hs.505136 | Importin 8 | IPO8 | 12 | 5 | D12S310 - D12S345 |
| 62141 | 137472 | Hs.505136 | Importin 8 | IPO8 | 12 | 5 | D12S310 - D12S345 |
| 2393 | 1459 | Hs.527861 | Amplified in osteosarcoma | OS9 | 12 | 8 | D12S368 - D12S83 |
| 52475 | 133577 | Hs.715497 | Hypothetical LOC552889 | LOC552889 | 12 | 9 | D12S83 - D12S326 |
| 12847 | 19582 | Hs.584845 | Plexin C1 | PLXNC1 | 12 | 11 | D12S326 - D12S346 |
| 67579 | 212016 | Hs.592011 | Chromosome 12 open reading frame 49 | C12orf49 | 12 | 12 | D12S346 - D12S367 |
| 13107 | 43389 | Hs.506655 | PR domain containing 4 | PRDM4 | 12 | 13 | D12S78 - D12S79 |
| 2261 | 1393 | Hs.713526 | Phosphatidylethanolamine binding protein 1 | PEBP1 | 12 | 14 | D12S79 - D12S324 |
| 56027 | 134441 | Hs.506985 | WD repeat and SOCS box-containing 2 | WSB2 | 12 | 14 | D12S79 - D12S86 |
| 13863 | 42131 | Hs.437585 | Syntaxin 2 | STX2 | 12 | 17 | D12S367 - 12qTER |
| Chromosome 13 | |||||||
| 53882 | 132182 | Hs.435815 | Family with sequence similarity 48, member A | FAM48A | 13 | 3 | D13S171 - D13S263 |
| Chromosome 14 | |||||||
| 57738 | 135135 | Hs.419259 | REC8 homolog (yeast) | REC8 | 14 | 2 | D14S283 - D14S80 |
| 14081 | 45513 | Hs.443661 | Synaptojanin 2 binding protein | SYNJ2BP | 14 | 8 | D14S63 - D14S74 |
| 16187 | 46465 | Hs.443661 | Synaptojanin 2 binding protein | SYNJ2BP | 14 | 8 | 14pTER - D14S261 |
| 55227 | 134011 | Hs.528131 | Chromosome 14 open reading frame 102 | C14orf102 | 14 | 10 | D14S68 - D14S280 |
| 57506 | 135039 | Hs.308122 | Inositol 1,3,4-triphosphate 5/6 kinase | ITPK1 | 14 | 11 | D14S280 - D14S65 |
| 2425 | 1475 | Hs.510635 | Immunoglobulin heavy constant mu | IGHG1 | 14 | 14 | D14S292 - 14qTER |
| 15465 | 46157 | Hs.656533 | Transcribed locus, strongly similar to NP_060805.3 zinc finger protein 839 [Homo sapiens] | - | 14 | 14 | D14S280 - 14qTER |
| Chromosome 15 | |||||||
| 17055 | 46815 | Hs.75335 | Glycine amidinotransferase (L-arginine:glycine amidinotransferase) | GATM | 15 | 2 | D15S126 - D15S117 |
| 54493 | 133247 | Hs.292949 | INO80 homolog (S. cerevisiae) | INO80 | 15 | 2 | D15S165 - D15S126 |
| 12855 | 43400 | Hs.654506 | Myosin IE | MYO1E | 15 | 3 | D15S117 - D15S153 |
| 12077 | 42138 | Hs.21577 | Snurportin 1 | SNUPN | 15 | 6 | D15S153 - D15S131 |
| 12511 | 45287 | Hs.526464 | Promyelocytic leukemia | PML | 15 | 6 | D15S153 - D15S205 |
| 49043 | 132443 | Hs.714377 | High-mobility group 20A | HMG20A | 15 | 6 | D15S131 - D15S205 |
| 12327 | 19552 | Hs.459211 | A kinase (PRKA) anchor protein 13 | AKAP13 | 15 | 7 | D15S205 - D15S127 |
| 13695 | 45155 | Hs.116459 | Mannosidase, alpha, class 2A, member 2 | MAN2A2 | 15 | 8 | D15S127 - D15S130 |
| Chromosome 16 | |||||||
| 12277 | 45331 | Hs.440219 | Ubinuclein 1 | UBN1 | 16 | 0 | 16pTER - D16S423 |
| 13339 | 42122 | Hs.654653 | Chromosome 16 open reading frame 5 | C16orf5 | 16 | 0 | 16pTER - D16S407 |
| 50054 | 132306 | Hs.459795 | Rogdi homolog (Drosophila) | ROGDI | 16 | 0 | 16pTER - D16S423 |
| 57324 | 134960 | Hs.6314 | Seizure related 6 homolog (mouse)-like 2 | SEZ6L2 | 16 | 6 | D16S411 - D16S415 |
| 51641 | 132858 | Hs.531668 | Chemokine (C-X3-C motif) ligand 1 | CX3CL1 | 16 | 7 | D16S415 - D16S503 |
| 55268 | 134030 | Hs.655071 | Proline-rich transmembrane protein 2 | PRRT2 | 16 | 7 | D16S415 - D16S503 |
| 12555 | 19455 | Hs.232194 | KIAA0174 | KIAA0174 | 16 | 8 | D16S503 - D16S516 |
| 14233 | 45660 | Hs.151218 | DEAH (Asp-Glu-Ala-His) box polypeptide 38 | DHX38 | 16 | 8 | D16S503 - D16S516 |
| 58252 | 135398 | Hs.461647 | KIAA0182 | KIAA0182 | 16 | 11 | D16S511 - D16S520 |
| Chromosome 17 | |||||||
| 50628 | 132975 | Hs.499620 | Gem (nuclear organelle) associated protein 4 | GEMIN4 | 17 | 1 | D17S849 - D17S938 |
| 17093 | 46833 | Hs.462214 | Growth arrest-specific 7 | GAS7 | 17 | 2 | D17S938 - D17S799 |
| 2353 | 1439 | Hs.462492 | Ubiquitin specific peptidase 22 | USP22 | 17 | 4 | D17S799 - D17S925 |
| 13087 | 43358 | Hs.462492 | Ubiquitin specific peptidase 22 | USP22 | 17 | 4 | D17S799 - D17S925 |
| 16009 | 46393 | Hs.372031 | Peripheral myelin protein 22 | PMP22 | 17 | 4 | D17S799 - D17S925 |
| 16835 | 46724 | Hs.78582 | Developmentally regulated GTP binding protein 2 | DRG2 | 17 | 4 | D17S799 - D17S925 |
| 49955 | 131568 | Hs.513984 | Flightless I homolog (Drosophila) | FLII | 17 | 4 | D17S799 - D17S798 |
| 59019 | 135794 | Hs.657637 | Transcribed locus | - | 17 | 4 | D17S799 - D17S925 |
| 13919 | 45540 | Hs.3426 | Era G-protein-like 1 (E. coli) | ERAL1 | 17 | 5 | D17S925 - D17S791 |
| 64531 | 137829 | Hs.462732 | Suppressor of zeste 12 homolog (Drosophila) | SUZ12 | 17 | 5 | D17S925 - D17S798 |
| 13079 | 42118 | Hs.532790 | N-myristoyltransferase 1 | NMT1 | 17 | 6 | D17S798 - D17S791 |
| 13875 | 43391 | Hs.99936 | Keratin 10 | KRT10 | 17 | 6 | D17S798 - D17S787 |
| 50217 | 131606 | Hs.569809 | Rho GTPase activating protein 27 | ARHGAP27 | 17 | 6 | D17S798 - D17S787 |
| 65648 | 210190 | Hs.655178 | AP1 gamma subunit binding protein 1 | AP1GBP1 | 17 | 6 | D17S798 - D17S791 |
| 69521 | 212421 | Hs.294005 | Glucose 6 phosphatase, catalytic, 3 | G6PC3 | 17 | 6 | D17S798 - D17S787 |
| 2235 | 1380 | Hs.172928 | Collagen, type I, alpha 1 | COL1A1 | 17 | 7 | D17S791 - D17S787 |
| 12339 | 43387 | Hs.8033 | Radical S-adenosyl methionine domain containing 1 | RSAD1 | 17 | 7 | D17S791 - D17S787 |
| 51377 | 132776 | Hs.463426 | Ankyrin repeat domain 40 | ANKRD40 | 17 | 7 | D17S791 - D17S787 |
| 12733 | 45245 | Hs.528952 | Tripartite motif-containing 25 | TRIM25 | 17 | 8 | D17S791 - D17S808 |
| 11933 | 45202 | Hs.280342 | Protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) | PRKAR1A | 17 | 9 | D17S808 - D17S949 |
| 53385 | 132345 | Hs.202011 | Coiled-coil domain containing 47 | CCDC47 | 17 | 9 | D17S808 - D17S949 |
| 2347 | 1436 | Hs.3903 | CDC42 effector protein (Rho GTPase binding) 4 | CDC42EP4 | 17 | 10 | D17S949 - D17S802 |
| 2349 | 1437 | Hs.3903 | CDC42 effector protein (Rho GTPase binding) 4 | CDC42EP4 | 17 | 10 | D17S949 - D17S802 |
| 49233 | 131854 | Hs.514470 | Solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 | SLC25A19 | 17 | 10 | D17S949 - D17S802 |
| 60829 | 136761 | Hs.514474 | KIAA0195 | KIAA0195 | 17 | 10 | D17S949 - D17S802 |
| 65122 | 209928 | Hs.435719 | Sidekick homolog 2 (chicken) | SDK2 | 17 | 10 | D17S949 - D17S802 |
| 55023 | 133901 | Hs.29288 | Endo-beta-N-acetylglucosaminidase | FLJ21865 | 17 | 11 | D17S802 - D17S784 |
| Chromosome 18 | |||||||
| 59085 | 135829 | Hs.592340 | Zinc finger protein 161 homolog (mouse) | ZFP161 | 18 | 2 | D18S59 - D18S52 |
| 2301 | 1413 | Hs.140903 | Mindbomb homolog 1 (Drosophila) | MIB1 | 18 | 5 | D18S53 - D18S478 |
| Chromosome 19 | |||||||
| 12715 | 45219 | Hs.591382 | Basigin (Ok blood group) | BSG | 19 | 0 | 19pTER - D19S209 |
| 15059 | 46012 | Hs.24301 | Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa | POLR2E | 19 | 0 | 19pTER - D19S216 |
| 52461 | 133430 | Hs.172753 | DIRAS family, GTP-binding RAS-like 1 | DIRAS1 | 19 | 0 | 19pTER - D19S209 |
| 12821 | 42115 | Hs.406534 | High-mobility group 20B | HMG20B | 19 | 1 | 19pTER - D19S209 |
| 50811 | 132189 | Hs.465784 | Translocase of inner mitochondrial membrane 44 homolog (yeast) | TIMM44 | 19 | 2 | D19S216 - D19S221 |
| 58119 | 135202 | Hs.659797 | Zinc finger protein 558 | ZNF558 | 19 | 2 | D19S216 - D19S221 |
| 62176 | 137489 | Hs.213289 | Low density lipoprotein receptor | LDLR | 19 | 2 | D19S216 - D19S221 |
| 49213 | 131725 | Hs.284208 | KN motif and ankyrin repeat domains 2 | KANK2 | 19 | 3 | D19S216 - D19S221 |
| 2335 | 1430 | Hs.515255 | LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) | LSM4 | 19 | 4 | D19S226 - D19S220 |
| 2371 | 1448 | Hs.631627 | Calcium homeostasis endoplasmic reticulum protein | CHERP | 19 | 4 | D19S226 - D19S414 |
| 48552 | 132670 | Hs.709287 | GATA zinc finger domain containing 2A | GATAD2A | 19 | 4 | D19S226 - D19S414 |
| 50789 | 131981 | Hs.706814 | DET1 and DDB1 associated 1 | DDA1 | 19 | 4 | D19S226 - D19S414 |
| 51752 | 131598 | Hs.71040 | Adaptor-related protein complex 1, mu 1 subunit | AP1M1 | 19 | 4 | D19S221 - D19S226 |
| 59338 | 135961 | Hs.378901 | Zinc finger protein 536 | ZNF536 | 19 | 4 | D19S226 - D19S220 |
| 13585 | 42109 | Hs.466693 | Sirtuin (silent mating type information regulation 2 homolog) 2 (S. cerevisiae) | SIRT2 | 19 | 6 | D19S220 - D19S420 |
| 12075 | 42135 | Hs.631593 | Protein phosphatase 1, regulatory (inhibitor) subunit 15A | PPP1R15A | 19 | 7 | D19S420 - D19S418 |
| 12295 | 42102 | Hs.631593 | Protein phosphatase 1, regulatory (inhibitor) subunit 15A | PPP1R15A | 19 | 7 | D19S420 - D19S418 |
| 12565 | 19488 | Hs.275464 | Kallikrein-related peptidase 10 | KLK10 | 19 | 7 | D19S420 - D19S418 |
| 15731 | 46281 | Hs.515515 | KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 | KDELR1 | 19 | 7 | D19S420 - D19S418 |
| 56073 | 134322 | Hs.327631 | Retinol dehydrogenase 13 (all-trans/9-cis) | RDH13 | 19 | 8 | D19S420 - D19S210 |
| Chromosome 20 | |||||||
| 12073 | 42132 | Hs.18946 | Mitochondrial ribosomal protein S26 | MRPS26 | 20 | 1 | D20S117 - D20S95 |
| 12819 | 42112 | Hs.441550 | Abhydrolase domain containing 12 | ABHD12 | 20 | 6 | D20S118 - D20S195 |
| 17669 | 46917 | Hs.368157 | Phosphorylase, glycogen; brain | PYGB | 20 | 6 | D20S118 - D20S107 |
| 12065 | 19530 | Hs.168073 | Transient receptor potential cation channel, subfamily C, member 4 associated protein | TRPC4AP | 20 | 7 | D20S118 - D20S107 |
| 13153 | 45114 | Hs.168073 | Transient receptor potential cation channel, subfamily C, member 4 associated protein | TRPC4AP | 20 | 7 | D20S118 - D20S107 |
| 16873 | 46742 | Hs.6126 | Mannosidase, beta A, lysosomal-like | MANBAL | 20 | 7 | D20S118 - D20S195 |
| 58951 | 135758 | Hs.6891 | Splicing factor, arginine/serine-rich 6 | SFRS6 | 20 | 8 | D20S195 - D20S119 |
| 16529 | 46601 | Hs.472877 | Eyes absent homolog 2 (Drosophila) | EYA2 | 20 | 10 | D20S178 - D20S196 |
| 12595 | 43388 | Hs.714307 | ATPase, class II, type 9A | ATP9A | 20 | 11 | D20S178 - D20S100 |
| Chromosome 21 | |||||||
| 12291 | 19426 | Hs.634632 | Interferon gamma receptor 2 (interferon gamma transducer 1) | IFNGR2 | 21 | 3 | D21S263 - D21S1252 |
| 2237 | 1381 | Hs.474010 | Pituitary tumor-transforming 1 interacting protein | PTTG1IP | 21 | 5 | D21S266 - 21qTER |
| 2239 | 1382 | Hs.474010 | Pituitary tumor-transforming 1 interacting protein | PTTG1IP | 21 | 5 | 21pTER - D21S1256 |
| 50884 | 132976 | Hs.431043 | PBX/knotted 1 homeobox 1 | PKNOX1 | 21 | 5 | D21S1252 - 21qTER |
| Chromosome 22 | |||||||
| 54872 | 133740 | Hs.517419 | Kelch-like 22 (Drosophila) | KLHL22 | 22 | 0 | D22S420 - D22S315 |
| 13957 | 45557 | Hs.631672 | BCL2-like 13 (apoptosis facilitator) | BCL2L13 | 22 | 1 | 22pTER - D22S315 |
| 61252 | 136990 | Hs.30743 | Preferentially expressed antigen in melanoma | PRAME | 22 | 2 | D22S315 - D22S280 |
| 61505 | 137123 | Hs.517541 | SEC14-like 4 (S. cerevisiae) | SEC14L4 | 22 | 2 | 22pTER - D22S420 |
| 59847 | 136215 | Hs.115099 | Apolipoprotein L, 4 | APOL4 | 22 | 3 | D22S315 - D22S280 |
| 16203 | 46468 | Hs.3094 | Josephin domain containing 1 | JOSD1 | 22 | 4 | D22S283 - 22qTER |
| 52608 | 132243 | Hs.183800 | Ran GTPase activating protein 1 | RANGAP1 | 22 | 4 | D22S283 - D22S274 |
| 12299 | 19454 | Hs.162877 | Protein kinase C and casein kinase substrate in neurons 2 | PACSIN2 | 22 | 5 | D22S283 - D22S274 |
| 14291 | 45681 | Hs.216226 | Synaptogyrin 1 | SYNGR1 | 22 | 5 | D22S423 - 22qTER |
| 16661 | 46659 | Hs.715637 | Leucine zipper, down-regulated in cancer 1-like | LDOC1L | 22 | 5 | D22S423 - D22S274 |
| 61605 | 137178 | Hs.530381 | Pim-3 oncogene | PIM3 | 22 | 6 | D22S274 - 22qTER |
| 64518 | 137769 | Hs.435044 | TBC1 domain family, member 22A | TBC1D22A | 22 | 6 | D22S274 - 22qTER |
| Chromosome X | |||||||
| 16461 | 46572 | Hs.6551 | ATPase, H+ transporting, lysosomal accessory protein 1 | ATP6AP1 | X | 15 | DXS1227 - 23qTER |
| 58291 | 135418 | Hs.436803 | Von Hippel-Lindau binding protein 1 | VBP1 | X | 15 | 23pTER - DXS1060 |
|
Questions and comments to: Bob Clifford ( clifforr@mail.nih.gov ) Last modified: 24 April 2001 |