R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|4689454|gb|AAD27902.1|AC006267_7 (AC006267) putative polyprotein
[Arabidopsis thaliana] >gi|7267450|emb|CAB81146.1| (AL161510)
putative polyprotein [Arabidopsis thaliana]
Length = 1054
Frame -2 hits (HSPs): ____
Frame -3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | || 1054
0 150 300 450 600 750 900 1050
Minus Strand HSPs:
Score = 101 (35.6 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 22/64 (34%), Positives = 39/64 (60%), Frame = -3
Query: 276 ELYALFQAFKH*HHYLFHREFVLFTDHDAL*YXNW*PEKSFCMS*ASWHAYLQ*FTFVIE 97
ELYAL +A + HYL+ ++FV+ TDH++L + ++ A W +++ F +VI+
Sbjct: 780 ELYALVRALQTWQHYLWPKKFVIHTDHESLKHLKG--QQKLNKRHARWVEFIETFPYVIK 837
Query: 96 HKSR 85
+K R
Sbjct: 838 YKKR 841
Score = 75 (26.4 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 21/57 (36%), Positives = 27/57 (47%), Frame = -2
Query: 412 FXSHLELHYXAXKFGIGAVLSQSNRPIAX*QETFW-AKLXYSTYACGTLCPISSIQT 245
F E+ A GIGAVL Q ++PIA E A L Y TY + ++QT
Sbjct: 734 FMKSFEIECDASGLGIGAVLMQDHKPIAYFSEKLGGATLNYPTYDKELYALVRALQT 790
>gi|4325354|gb|AAD17351.1| (AF128395) contains similarity to retrovirus-related
polyproteins and to CCHC zinc finger protein (Pfam: PF00098,
Score=16.3, E=0.051, E= 1) [Arabidopsis thaliana]
>gi|7267432|emb|CAB77944.1| (AL161508) putative polyprotein
[Arabidopsis thaliana]
Length = 1138
Frame -2 hits (HSPs): ___
Frame -3 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | | | | 1138
0 150 300 450 600 750 900 1050
Minus Strand HSPs:
Score = 100 (35.2 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 22/62 (35%), Positives = 38/62 (61%), Frame = -3
Query: 276 ELYALFQAFKH*HHYLFHREFVLFTDHDAL*YXNW*PEKSFCMS*ASWHAYLQ*FTFVIE 97
ELYAL +A + HYL+ +EFV+ TDH++L + ++ A W +++ F +VI+
Sbjct: 667 ELYALVRALQTWQHYLWPKEFVIHTDHESLKHLKG--QQKLNKRHARWVEFIETFPYVIK 724
Query: 96 HK 91
+K
Sbjct: 725 YK 726
Score = 72 (25.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 22/61 (36%), Positives = 28/61 (45%), Frame = -2
Query: 424 SMHRFXSHLELHYXAXKFGIGAVLSQSNRPIAX*QETFW-AKLXYSTYACGTLCPISSIQ 248
S+ F E+ A GIGAVL Q +PIA E A L Y TY + ++Q
Sbjct: 617 SLPDFLKTFEIECDAPGVGIGAVLMQDKKPIAYFSEKLGGATLNYPTYDKELYALVRALQ 676
Query: 247 T 245
T
Sbjct: 677 T 677
>gi|8778340|gb|AAF79348.1|AC007887_7 (AC007887) F15O4.13 [Arabidopsis thaliana]
Length = 1887
Frame -2 hits (HSPs): ___
Frame -3 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | 1887
0 500 1000 1500
Minus Strand HSPs:
Score = 100 (35.2 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 22/62 (35%), Positives = 38/62 (61%), Frame = -3
Query: 276 ELYALFQAFKH*HHYLFHREFVLFTDHDAL*YXNW*PEKSFCMS*ASWHAYLQ*FTFVIE 97
ELYAL +A + HYL+ +EFV+ TDH++L + ++ A W +++ F +VI+
Sbjct: 1248 ELYALVRALQTGQHYLWPKEFVIHTDHESLKHLKG--QQKLNKRHARWVEFIETFPYVIK 1305
Query: 96 HK 91
+K
Sbjct: 1306 YK 1307
Score = 70 (24.6 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 21/61 (34%), Positives = 27/61 (44%), Frame = -2
Query: 424 SMHRFXSHLELHYXAXKFGIGAVLSQSNRPIAX*QETFW-AKLXYSTYACGTLCPISSIQ 248
S+ F E+ A GIG VL Q +PIA E A L Y TY + ++Q
Sbjct: 1198 SLPDFLKTFEIECDASGVGIGVVLMQDKKPIAYFSEKLGGATLNYPTYDKELYALVRALQ 1257
Query: 247 T 245
T
Sbjct: 1258 T 1258
>gi|5764470|gb|AAD51320.1| (AF169187) polymerase [Triticum aestivum]
Length = 235
Frame -2 hits (HSPs): _______
Frame -3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | 235
0 50 100 150 200
Minus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.0010, Sum P(2) = 0.0010
Identities = 20/61 (32%), Positives = 31/61 (50%), Frame = -3
Query: 276 ELYALFQAFKH*HHYLFHREFVLFTDHDAL*YXNW*PEKSFCMS*ASWHAYLQ*FTFVIE 97
ELYAL + HYL EF++ TDH+ L Y + A W +++ F +VI+
Sbjct: 39 ELYALVRVLHEWEHYLRPHEFIIHTDHETLKYLKG--QTKLNKRHAKWSEFIESFPYVIK 96
Query: 96 H 94
+
Sbjct: 97 Y 97
Score = 59 (20.8 bits), Expect = 0.0010, Sum P(2) = 0.0010
Identities = 15/30 (50%), Positives = 18/30 (60%), Frame = -2
Query: 370 GIGAVLSQSNRPIAX*QETF-WAKLXYSTY 284
GIG VL+Q RPIA +E A+L Y Y
Sbjct: 7 GIGGVLTQEKRPIAYFREKLSGAQLNYPIY 36
>gi|6598452|gb|AAF18613.1|AC005171_1 (AC005171) putative retroelement integrase
[Arabidopsis thaliana]
Length = 1215
Frame -2 hits (HSPs): __
Frame -3 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | | | || 1215
0 150 300 450 600 750 900 1050 1200
Minus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.0068, Sum P(2) = 0.0068
Identities = 21/62 (33%), Positives = 37/62 (59%), Frame = -3
Query: 276 ELYALFQAFKH*HHYLFHREFVLFTDHDAL*YXNW*PEKSFCMS*ASWHAYLQ*FTFVIE 97
ELYAL +A + HYL+ + FV+ TDH++L + ++ A W +++ F +VI+
Sbjct: 757 ELYALVRALQRWQHYLWPKVFVIHTDHESLKHLKG--QQKLNKRHARWVEFIETFAYVIK 814
Query: 96 HK 91
+K
Sbjct: 815 YK 816
Score = 61 (21.5 bits), Expect = 0.0068, Sum P(2) = 0.0068
Identities = 18/47 (38%), Positives = 21/47 (44%), Frame = -2
Query: 421 MHRFXSHLELHYXAXKFGIGAVLSQSNRPIAX*QETFW-AKLXYSTY 284
+ F E+ A GIGAVL Q + IA E A L Y TY
Sbjct: 708 LSEFLKTFEIECDASGIGIGAVLMQDQKLIAFFSEKLGGATLNYPTY 754
>gi|6705984|dbj|BAA89466.1| (AB033235) gag-pol polyprotein [Oryza sativa]
Length = 1587
Frame -2 hits (HSPs): ___
Frame -3 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | 1587
0 500 1000 1500
Minus Strand HSPs:
Score = 93 (32.7 bits), Expect = 0.0086, Sum P(2) = 0.0086
Identities = 20/62 (32%), Positives = 36/62 (58%), Frame = -3
Query: 276 ELYALFQAFKH*HHYLFHREFVLFTDHDAL*YXNW*PEKSFCMS*ASWHAYLQ*FTFVIE 97
EL+AL + + HYL+ +EFV+ +DH++L + + A W +++ F +VI+
Sbjct: 1084 ELFALVRTLETWQHYLWPKEFVIHSDHESLKHIR--SQAKHNRRHAKWVEFIESFPYVIK 1141
Query: 96 HK 91
HK
Sbjct: 1142 HK 1143
Score = 66 (23.2 bits), Expect = 0.0086, Sum P(2) = 0.0086
Identities = 18/57 (31%), Positives = 25/57 (43%), Frame = -2
Query: 412 FXSHLELHYXAXKFGIGAVLSQSNRPIAX*QETFWA-KLXYSTYACGTLCPISSIQT 245
F EL A G+G VL Q +P+A E L YSTY + +++T
Sbjct: 1038 FNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLET 1094
>gi|1030731|emb|CAA32198.1| (X14037) polyprotein [Drosophila melanogaster]
Length = 1053
Frame -2 hits (HSPs): ___
Frame -3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | || 1053
0 150 300 450 600 750 900 1050
Minus Strand HSPs:
Score = 90 (31.7 bits), Expect = 3.6, Sum P(2) = 0.97
Identities = 23/63 (36%), Positives = 34/63 (53%), Frame = -3
Query: 279 VELYALFQAFKH*HHYLFHREFVLFTDHDAL*YXNW*PEKSFCMS*ASWHAYLQ*FTFVI 100
+E A+ +A KH HYL REFV++TD ++L + W AYLQ F F I
Sbjct: 787 LETLAVVKAVKHFRHYLIGREFVVYTDCNSLKASR--TKIDLTPRVHRWWAYLQSFNFEI 844
Query: 99 EHK 91
+++
Sbjct: 845 QYR 847
Score = 40 (14.1 bits), Expect = 3.6, Sum P(2) = 0.97
Identities = 15/56 (26%), Positives = 27/56 (48%), Frame = -2
Query: 400 LELHYXAXKFGIGAVLSQ--SNRP--IAX*QETFWA-KLXYSTYACGTLCPISSIQ 248
+ELH A G GA+L ++P I +T + + Y +Y TL + +++
Sbjct: 742 IELHTDASACGYGAILLHRIESKPHVIEYFSKTTTSVESRYHSYELETLAVVKAVK 797
>gi|36070|emb|CAA41389.1| (X58480) rlf fusion protein [Homo sapiens]
Length = 96
Frame 2 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | 96
0 20 40 60 80
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 4.0, P = 0.98
Identities = 14/37 (37%), Positives = 23/37 (62%), Frame = +2
Query: 77 IRSLDLCSMTNVNYCRYACQEAHDMQKDFSGYQLXYY 187
+R ++ ++++NYCR CQ A DM D+ YQ +Y
Sbjct: 60 LREQEVSEVSSLNYCRSFCQGA-DM--DYDSYQHYFY 93
>gi|9791037 ref|NP_063764.1| D ORF C; putative [Vaccinia virus]
>gi|141527|sp|P20552|YVDC_VACCC HYPOTHETICAL 7.3 KD PROTEIN
>gi|93364|pir||F42516 D-ORF-C protein - vaccinia virus (strain
Copenhagen) >gi|335449|gb|AAA48101.1| (M35027) D ORF C; putative
[Vaccinia virus]
Length = 69
Frame -1 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | 69
0 20 40 60
Minus Strand HSPs:
Score = 63 (22.2 bits), Expect = 4.7, P = 0.99
Identities = 14/30 (46%), Positives = 22/30 (73%), Frame = -1
Query: 170 SLKNLSACHE-LLGMHIYNSSHLS*SINLG 84
SL+ ++ H LL ++++NSSHL+ S NLG
Sbjct: 12 SLRLSNSVHSGLLSIYLFNSSHLNASTNLG 41
>gi|85056|pir||S02021 micropia polyprotein - fruit fly (Drosophila
melanogaster) (fragment)
Length = 1291
Frame -2 hits (HSPs): ___
Frame -3 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | 1291
0 500 1000
Minus Strand HSPs:
Score = 90 (31.7 bits), Expect = 5.5, Sum P(2) = 1.0
Identities = 23/63 (36%), Positives = 34/63 (53%), Frame = -3
Query: 279 VELYALFQAFKH*HHYLFHREFVLFTDHDAL*YXNW*PEKSFCMS*ASWHAYLQ*FTFVI 100
+E A+ +A KH HYL REFV++TD ++L + W AYLQ F F I
Sbjct: 787 LETLAVVKAVKHFRHYLIGREFVVYTDCNSLKASR--TKIDLTPRVHRWWAYLQSFNFEI 844
Query: 99 EHK 91
+++
Sbjct: 845 QYR 847
Score = 40 (14.1 bits), Expect = 5.5, Sum P(2) = 1.0
Identities = 15/56 (26%), Positives = 27/56 (48%), Frame = -2
Query: 400 LELHYXAXKFGIGAVLSQ--SNRP--IAX*QETFWA-KLXYSTYACGTLCPISSIQ 248
+ELH A G GA+L ++P I +T + + Y +Y TL + +++
Sbjct: 742 IELHTDASACGYGAILLHRIESKPHVIEYFSKTTTSVESRYHSYELETLAVVKAVK 797
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.94
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.348 0.152 0.527
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.348 0.151 0.559
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.348 0.159 0.527
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.352 0.157 0.586
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.364 0.163 0.611
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.356 0.159 0.613
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 201 187 10. 76 3 12 22 0.12 34
31 0.12 37
+2 0 201 189 10. 76 3 12 22 0.12 34
31 0.12 37
+1 0 201 186 10. 76 3 12 22 0.12 34
31 0.12 37
-1 0 201 187 10. 76 3 12 22 0.12 34
31 0.12 37
-2 0 201 187 10. 76 3 12 22 0.12 34
31 0.12 37
-3 0 201 187 10. 76 3 12 22 0.12 34
31 0.12 37
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 10
No. of states in DFA: 598 (59 KB)
Total size of DFA: 216 KB (256 KB)
Time to generate neighborhood: 0.01u 0.01s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 172.14u 1.10s 173.24t Elapsed: 00:00:31
Total cpu time: 172.16u 1.15s 173.31t Elapsed: 00:00:31
Start: Mon Oct 1 20:59:43 2001 End: Mon Oct 1 21:00:14 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000