R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|11357983|pir||T48025 hypothetical protein T12C14.30 - Arabidopsis thaliana
>gi|7340704|emb|CAB82947.1| (AL162507) putative protein
[Arabidopsis thaliana]
Length = 479
Frame 1 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | 479
0 150 300 450
Plus Strand HSPs:
Score = 745 (262.3 bits), Expect = 8.5e-73, P = 8.5e-73
Identities = 141/196 (71%), Positives = 163/196 (83%), Frame = +1
Query: 94 ANRPDPDIDDDFRELYKEYTGPLGTATTN-MQERAKSNK-RSNAGSDEEEEAR-DPNAVP 264
+ R DP++DDDF E+YKEYTGP T N +Q++ K K RS DEEEE DPN+VP
Sbjct: 3 STRSDPELDDDFSEIYKEYTGPASAVTNNNIQDKDKPVKQRSEERCDEEEEQLPDPNSVP 62
Query: 265 TDFTSREAKVWEAKSKATERNWKKRKEEEMICKLCGESGHFTQGCPSTLGANRKSQDFFE 444
TDFTSREAKVWEAKSKATERNWKKRKEEEMICK+CGESGHFTQGCPSTLGANRKSQ+FFE
Sbjct: 63 TDFTSREAKVWEAKSKATERNWKKRKEEEMICKICGESGHFTQGCPSTLGANRKSQEFFE 122
Query: 445 RIPARDKNVRALFTEKVLSKIEKDVGCKIKMDEKFIIVSGKDRLILAKGVDAGHKIREEG 624
R+PARD NVR LFTEKV+ IE++ CKIK+DEKFIIVSGKDRLIL KGVDA HK++E+G
Sbjct: 123 RVPARDNNVRVLFTEKVMESIERETSCKIKLDEKFIIVSGKDRLILRKGVDAVHKVKEDG 182
Query: 625 DQRGSSSSQMTQSRSP 672
+ + SS S ++SRSP
Sbjct: 183 EMKSSSVSHRSRSRSP 198
>gi|6498462|dbj|BAA87851.1| (AP000816) hypothetical protein [Oryza sativa]
>gi|7106535|dbj|BAA92220.1| (AP001278) hypothetical protein [Oryza
sativa]
Length = 460
Frame 1 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | 460
0 150 300 450
Plus Strand HSPs:
Score = 713 (251.0 bits), Expect = 2.1e-69, P = 2.1e-69
Identities = 139/199 (69%), Positives = 160/199 (80%), Frame = +1
Query: 91 MANRPDPDIDDD-FRELY-KEYTGPLGTATTNMQERAKSNKR--SNAGSDEEEEARDPNA 258
MA P P+IDD+ F E+Y K Y+GP+ T T N+ R KR SDEE+ DPNA
Sbjct: 1 MAREPSPEIDDELFNEVYGKAYSGPVATTTNNVTPRVNDEKRPLEREKSDEEDGPPDPNA 60
Query: 259 VPTDFTSREAKVWEAKSKATERNWKKRKEEEMICKLCGESGHFTQGCPSTLGANRKSQDF 438
VPTDFTSREAKVWEAK+KATERNWKKRKEEEMICK+CGESGHFTQGCPSTLGANR++ DF
Sbjct: 61 VPTDFTSREAKVWEAKAKATERNWKKRKEEEMICKICGESGHFTQGCPSTLGANRRNADF 120
Query: 439 FERIPARDKNVRALFTEKVLSKIEKDVGCKIKMDEKFIIVSGKDRLILAKGVDAGHKIRE 618
FER+PARDK VR LFTE+ +S+IEKDVGCKIKMDEKF+ VSGKDRLILAKGVDA HKI +
Sbjct: 121 FERVPARDKQVRDLFTERTISQIEKDVGCKIKMDEKFLFVSGKDRLILAKGVDAVHKIIQ 180
Query: 619 EGDQRGSSSS-QMTQSRSP 672
EG + +SSS + + RSP
Sbjct: 181 EGKGKNTSSSPKRDRLRSP 199
>gi|7517337|pir||B72581 hypothetical protein APES063 - Aeropyrum pernix (strain
K1) >gi|5105622|dbj|BAA80935.1| (AP000062) 64aa long hypothetical
protein [Aeropyrum pernix]
Length = 64
Frame 3 hits (HSPs): _______________________
Frame 2 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | 64
0 20 40 60
Plus Strand HSPs:
Score = 50 (17.6 bits), Expect = 0.80, Sum P(2) = 0.55
Identities = 12/29 (41%), Positives = 16/29 (55%), Frame = +3
Query: 678 SPVSARFHRSEPKGLILTRNTSRFTKVGR 764
S V+AR HR+ L+L R T+ GR
Sbjct: 35 SLVTARHHRAVNTSLLLAHTARRSTRGGR 63
Score = 40 (14.1 bits), Expect = 0.80, Sum P(2) = 0.55
Identities = 8/24 (33%), Positives = 15/24 (62%), Frame = +2
Query: 503 RLKRMLAAKLRWMRSLLLSVVRID 574
R ++ L +L W R L L++V ++
Sbjct: 11 RGRQSLKPRLSWDRGLQLALVNVE 34
>gi|6691188|gb|AAF24526.1|AC007534_7 (AC007534) F7F22.12 [Arabidopsis thaliana]
Length = 169
Frame 1 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | 169
0 50 100 150
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.81, P = 0.56
Identities = 24/93 (25%), Positives = 42/93 (45%), Frame = +1
Query: 136 LYKEYTGPLGTAT-TNMQERAKSNKRSNAGSDEEEEARDPNAVPTD-FTSREAKVWEAKS 309
L Y G + T +N +E+ + N A D+E E N + + +R V + +
Sbjct: 41 LPSRYDGLVETMKYSNSREKLRLNDVMVAARDKEREMSQNNRLIAEGHYARRRPVGKNNN 100
Query: 310 ---KATERNWKKRKEEEMICKLCGESGHFTQGC 399
K R+W K + + +C +CG+ HF + C
Sbjct: 101 QGNKGKNRSWSKSADGKRVCWICGKEKHFNEQC 133
>gi|9294244|dbj|BAB02146.1| (AP000411) copia retroelement pol polyprotein-like
[Arabidopsis thaliana]
Length = 526
Frame 1 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | 526
0 150 300 450
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 1.1, P = 0.68
Identities = 52/217 (23%), Positives = 86/217 (39%), Frame = +1
Query: 43 SSHPHRVQFS*DIY-FLMANRPDPDID-DDFRELYKEYTGPLGTATTN--MQERAKSNKR 210
+S P+R+ Y + M + D + DDF +L + +G T ++E K +K
Sbjct: 122 TSLPNRIYLHLKFYTYKMTDSKSIDGNVDDFLKLVTDLNN-IGVNVTKERIKESGKLSKT 180
Query: 211 SNAGSDEEEEARDPNAVPTDFTSREAKVWEAKSKATERNWKKR---KEEEMICKLCGESG 381
+ G E R + F + K W +SK+ R+ K R + C +C G
Sbjct: 181 QSEGLYVETRGR----LEKRFDKGKGKPWRGRSKSKGRS-KSRPNYNKNNNGCFICRREG 235
Query: 382 HFTQGCPSTLGANRKSQDFFERIPARDKNVRALFTEKVLSKIEK--DVGCKIKMDEKFII 555
H+ + CP +N+ S I K L T +K E D GC F I
Sbjct: 236 HWKRECPEK-SSNKPSSS--ANIAVEPKQPLVLTTSPQYTKEESVVDSGCS------FHI 286
Query: 556 VSGKDRLILAKGVDAGHKIREEGDQRGSSSSQMTQSRSPEEVLLVL 693
KD + D G + R + +P++ +++L
Sbjct: 287 TPNKDSPFGLQEFDGGKVLMGNMTHREVKGIGKIKILNPDDYVVIL 332
>gi|1030731|emb|CAA32198.1| (X14037) polyprotein [Drosophila melanogaster]
Length = 1053
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | | || 1053
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 3.4, P = 0.97
Identities = 38/146 (26%), Positives = 66/146 (45%), Frame = +1
Query: 187 ERAKSNKRSNAGSDEEEEARDPNAVPTDFTSREAK-VWEAKSKATE-RNWKKRKEEEMI- 357
++ + + N G D++ P V F S+ + + E +SK + R K ++E+ +
Sbjct: 187 DKKRHARDDNLGPDQKNRKASP--VVCHFCSKPGRRIAECRSKMRQDRRAKPQREKSNVT 244
Query: 358 CKLCGESGHFTQGCPSTLGANRKSQDFFERIPARDKNVR----ALFTEKVLSKIEKDVG- 522
C CG+ GHF+ CP G K QD ++ V +L + I D G
Sbjct: 245 CYRCGQPGHFSNQCPKN-GTAAK-QDVTQQKTVNQCCVTEPKGSLHQRGEIYPICFDSGA 302
Query: 523 -CKIKMDEKFIIVSGK--DRLILAKGVDAG 603
C + D+ +SGK + ++ KG+ G
Sbjct: 303 ECSLIKDDISSKLSGKRINNTVMIKGIGGG 332
>gi|85056|pir||S02021 micropia polyprotein - fruit fly (Drosophila
melanogaster) (fragment)
Length = 1291
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | 1291
0 500 1000
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 4.2, P = 0.99
Identities = 38/146 (26%), Positives = 66/146 (45%), Frame = +1
Query: 187 ERAKSNKRSNAGSDEEEEARDPNAVPTDFTSREAK-VWEAKSKATE-RNWKKRKEEEMI- 357
++ + + N G D++ P V F S+ + + E +SK + R K ++E+ +
Sbjct: 187 DKKRHARDDNLGPDQKNRKASP--VVCHFCSKPGRRIAECRSKMRQDRRAKPQREKSNVT 244
Query: 358 CKLCGESGHFTQGCPSTLGANRKSQDFFERIPARDKNVR----ALFTEKVLSKIEKDVG- 522
C CG+ GHF+ CP G K QD ++ V +L + I D G
Sbjct: 245 CYRCGQPGHFSNQCPKN-GTAAK-QDVTQQKTVNQCCVTEPKGSLHQRGEIYPICFDSGA 302
Query: 523 -CKIKMDEKFIIVSGK--DRLILAKGVDAG 603
C + D+ +SGK + ++ KG+ G
Sbjct: 303 ECSLIKDDISSKLSGKRINNTVMIKGIGGG 332
>gi|11358885|pir||T48160 transcription factor GT-3a - Arabidopsis thaliana
>gi|6573264|gb|AAF17610.1|AF206715_1 (AF206715) transcription
factor GT-3a [Arabidopsis thaliana] >gi|7320716|emb|CAB81921.1|
(AL161746) transcription factor GT-3a [Arabidopsis thaliana]
Length = 323
Frame 1 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | | | | 323
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 7.3, P = 1.0
Identities = 33/118 (27%), Positives = 53/118 (44%), Frame = +1
Query: 34 SSSSSHPHRVQFS*DIYFLMANRPDPDIDDDFRELY---KEYTGPLGTAT-TNMQERAKS 201
S+SS H QFS D + P+ DI+++ L K T + T+T TN ++RAK
Sbjct: 152 STSSKRKHH-QFSSDDEEEEVDEPNQDINEELLSLVETQKRETEVITTSTSTNPRKRAKK 210
Query: 202 NKRSNAGSDEEEEARDPNAVPTDFTSREAKV-------WEAKS---KATERNWKKRKEE 348
K +G+ E + +F + K+ WE K + E+ W++R E
Sbjct: 211 GKGVASGTKAETAGNTLKDILEEFMRQTVKMEKEWRDAWEMKEIEREKREKEWRRRMAE 269
>gi|6683623|dbj|BAA89271.1| (AB025309) Gag [Alternaria alternata]
Length = 406
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 406
0 150 300
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 8.0, P = 1.0
Identities = 24/74 (32%), Positives = 32/74 (43%), Frame = +1
Query: 202 NKRSNAGSDEEEEARDPNAVPTDFTSREAKVWEAKSKATERNWK-KRKEEEMICKLCGES 378
N+RS A + P AV + S EA WE + R + K K + C CG+
Sbjct: 307 NQRSTAHDGAQNH---PRAVQRE-ASPEAMDWEPSKVSQARESRVKTKRAPLTCYSCGKP 362
Query: 379 GHFTQGCPSTLGANR 423
GH + C ST R
Sbjct: 363 GHIARDCQSTTRVRR 377
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.99
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.367 0.169 0.676
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.348 0.153 0.496
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.324 0.139 0.415
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.359 0.164 0.630
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.357 0.161 0.552
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.340 0.147 0.469
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 275 275 10. 79 3 12 22 0.097 36
33 0.12 39
+2 0 276 276 10. 79 3 12 22 0.098 36
33 0.12 39
+1 0 276 276 10. 79 3 12 22 0.098 36
33 0.12 39
-1 0 276 276 10. 79 3 12 22 0.098 36
33 0.12 39
-2 0 276 276 10. 79 3 12 22 0.098 36
33 0.12 39
-3 0 275 275 10. 79 3 12 22 0.097 36
33 0.12 39
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 9
No. of states in DFA: 595 (59 KB)
Total size of DFA: 257 KB (320 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 307.93u 0.98s 308.91t Elapsed: 00:02:21
Total cpu time: 307.98u 0.98s 308.96t Elapsed: 00:02:21
Start: Wed Jan 16 19:57:04 2002 End: Wed Jan 16 19:59:25 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000