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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs10537657          
refSNP ID: rs10537657
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:119/129
Map to Genome Build:36.3
Allele
Variation Class:DIP:
deletion/insertion polymorphism
RefSNP Alleles:-/CACA
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
NM_017509.2:c.43+1275_43+1278del4
NM_138563.1:c.43+1275_43+1278del4
NM_138564.1:c.43+1275_43+1278del4
NT_011109.15:g.23601618_23601621del4
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss14953891 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs10537657 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss14953891DEVINE_LAB|INDEL_GP34_WGS_33247fwd/T-/CACAccactgcacacgtgcatgtacacacacacacacacacacacagaatggcattatgcttaa11/13/0311/22/03119Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs10537657|allelePos=401|totalLen=801|taxid=9606|snpclass=2|alleles='-/CACA'|mol=Genomic|build=119
 gcaccactga actccagctt gggcggcaga gcgagactcc gtctcaaaaa aaaccaaaca
 aacaaaaaaa aGTCAAGGTT AAAACCGTGA TTCACCCACA AGACATTTTG TAGAGTTAGA
 GCTGCAGACA CCAACCCAGA AGGCCAACAC TCAGATGTGG ACTTGCTGTC TGGGGCAGCA
 CCCAGACACG GGGCTGGGCA TTCAAGGTCA AAGACATGCA GCTGAAGCCA GAGGCAGCCA
 GGGCAGGACA TATTTATCCA TCTCTAGATC AGCCCCCAAG CCAGATCTGT GGAGTCACTG
 ATTGGGTTTC ACATATGGGG ATCTGGCTCA TGCATGTGGA GAGGATGTGA ACATACAGGG
 CCTTGTATAC CCACTGCACA CGTGCATGTA CACACACACA
 N
 CACACACACA CAGAATGGCA TTATGCTTAA GGACATGATT AGAGACATTC AAGGTCACAG
 GACCAGGACC CCTCTCCACT GGGCAATGTG GATGCATCCC CTGAAGGTTG AAGCCATGCA
 CACTCCCACC CACACAGGGG CAGGATTTGC ACAGCCAGAC CAAATGCCCA CACTCTCCCC
 ATCACAGTCA GGAACTGGGC CAAAGGCCCC CGTGAGACCA GGGGAATGCG GATGTGGTGG
 ACAAGGGGCT TAACAAAGGA AGGGTGAGGT CGTCCTCCGA AGGGCGGAGG GTACGGGCTG
 AACAGCTGGG CACCGAGGCT GCACCTGGCC AGTCCAAGCC AGAGGAAGGT GGAGGCCCCA
 GCTGGGCGCA GCAGGCAGGC GCGAGGCAGG TAGGTGAGTG

  GeneView back to top
GeneView via analysis of contig annotation: KLK15 kallikrein-related peptidase 15
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_011109->NM_017509
svfunction
referenceNT_011109->NM_138563
svfunction
referenceNT_011109->NM_138564
svfunction
HuRefNW_001838498->NM_017509
svfunction
HuRefNW_001838498->NM_138563
svfunction
HuRefNW_001838498->NM_138564
svfunction
CeleraNW_927284->NM_017509
svfunction
CeleraNW_927284->NM_138563
svfunction
CeleraNW_927284->NM_138564
svfunction
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_011109->NM_017509->NP_05997923601618:23601621reverseintron
referenceNT_011109->NM_138563->NP_61263023601618:23601621reverseintron
referenceNT_011109->NM_138564->NP_61263123601618:23601621reverseintron
HuRefNW_001838498->NM_017509->NP_0599794597436:4597439forwardintron
HuRefNW_001838498->NM_138563->NP_6126304597436:4597439forwardintron
HuRefNW_001838498->NM_138564->NP_6126314597436:4597439forwardintron
CeleraNW_927284->NM_017509->NP_059979691814:691817reverseintron
CeleraNW_927284->NM_138563->NP_612630691814:691817reverseintron
CeleraNW_927284->NM_138564->NP_612631691814:691817reverseintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs10537657 maps exactly once on NCBI human chromosome 19
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
19NW_001838498.24597436..459743947668467..47668470minusTGTGalt_assembly_8HuRefHuRefview400
19NW_927284.1691814..69181748384530..48384533plusCACAalt_assembly_1CeleraCeleraview400
19NT_011109.1523601618..2360162156025240..56025243plusCACAref_assemblyreferencereferenceview400

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_011109
dbSNP Blast Analysis
GenBank HTGS Finished:GenBank HTGS Draft:
AC010325.7 NC_000019.8 AC027602.4

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .