Benchmarking Tools for the Alignment
of Functional Noncoding DNA

Pollard, Bergman, Stoye, Celniker & Eisen (2004) BMC Bioinformatics 5(1):6
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Figure 1: Distribution of noncoding sequence lengths in the D. melanogaster Release 3 genome sequence.

Sequences between coding exons were extracted from the D. melanogaster Release 3 euchromatic genome sequence and annotations, and transposable element sequences were subsequently subtracted to produce the "pre-integration" distribution of noncoding sequence lengths (see Methods for details).
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