BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= PG1237
(178 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34541086|ref|NP_905565.1| nitroimidazole resistance prot... 348 9e-95
gi|106893756|ref|ZP_01360880.1| nitroimidazole resistance p... 175 8e-43
gi|118475156|ref|YP_892914.1| nitroimidazole resistance pro... 129 7e-29
gi|154174410|ref|YP_001408317.1| putative nitroimidazole re... 125 7e-28
gi|109672832|ref|ZP_01375066.1| nitroimidazole resistance p... 109 6e-23
gi|154496908|ref|ZP_02035604.1| hypothetical protein BACCAP... 108 1e-22
gi|154149230|ref|YP_001406389.1| putative nitroimidazole re... 104 2e-21
gi|118745540|ref|ZP_01593512.1| pyridoxamine 5'-phosphate o... 86 8e-16
gi|150006767|ref|YP_001301510.1| 5-nitroimidazole antibioti... 82 1e-14
gi|53711709|ref|YP_097701.1| 5-nitroimidazole antibiotic re... 79 8e-14
gi|153953134|ref|YP_001393899.1| hypothetical protein CKL_0... 77 3e-13
gi|118743668|ref|ZP_01591670.1| pyridoxamine 5'-phosphate o... 76 1e-12
gi|28210610|ref|NP_781554.1| 5-nitroimidazole antibiotic re... 75 1e-12
gi|15895740|ref|NP_349089.1| Possible 5-Nitroimidazole anti... 75 1e-12
gi|154249860|ref|YP_001410685.1| pyridoxamine 5'-phosphate ... 74 4e-12
gi|126699063|ref|YP_001087960.1| putative 5-nitroimidazole ... 72 1e-11
gi|150391979|ref|YP_001322028.1| pyridoxamine 5'-phosphate ... 70 4e-11
gi|435261|emb|CAA50578.1| nimB [Bacteroides fragilis] 68 2e-10
gi|109647021|ref|ZP_01370925.1| pyridoxamine 5'-phosphate o... 67 5e-10
gi|51244162|ref|YP_064046.1| similar to nitroimidazole resi... 67 6e-10
gi|154250291|ref|YP_001411116.1| pyridoxamine 5'-phosphate ... 66 7e-10
gi|21229084|ref|NP_635006.1| antibiotic resistance protein ... 66 9e-10
gi|89896386|ref|YP_519873.1| hypothetical protein DSY3640 [... 65 2e-09
gi|34557930|ref|NP_907745.1| HYPOTHETICAL PROTEIN-Predicted... 65 2e-09
gi|153939571|ref|YP_001390665.1| 5-nitroimidazole antibioti... 65 2e-09
gi|24740575|emb|CAD56147.1| nitroimidazole resistance prote... 64 3e-09
gi|120603106|ref|YP_967506.1| pyridoxamine 5'-phosphate oxi... 64 3e-09
gi|46579334|ref|YP_010142.1| 5-nitroimidazole antibiotic re... 64 3e-09
gi|148378827|ref|YP_001253368.1| nitroimidazole resistance ... 64 4e-09
gi|435265|emb|CAA50581.1| nimA [Bacteroides vulgatus] 64 5e-09
gi|148380319|ref|YP_001254860.1| nitroimidazole resistance ... 64 5e-09
gi|148265539|ref|YP_001232245.1| pyridoxamine 5'-phosphate ... 64 5e-09
gi|7327848|emb|CAB82516.1| nitroimidazole resistance protei... 64 5e-09
gi|46325892|gb|AAS88128.1| nitroimidazole resistance protei... 62 2e-08
gi|150390037|ref|YP_001320086.1| pyridoxamine 5'-phosphate ... 61 2e-08
gi|78271546|emb|CAJ41287.1| nitroimidazole resistance prote... 61 3e-08
gi|148379291|ref|YP_001253832.1| 5-nitroimidazole antibioti... 61 3e-08
gi|153810923|ref|ZP_01963591.1| hypothetical protein RUMOBE... 61 3e-08
gi|106894571|ref|ZP_01361689.1| Pyridoxamine 5'-phosphate o... 59 9e-08
gi|124485827|ref|YP_001030443.1| hypothetical protein Mlab_... 59 9e-08
gi|67477322|ref|XP_654156.1| 5-nitroimidazole antibiotic re... 59 1e-07
gi|440393|emb|CAA54269.1| nimC [Bacteroides thetaiotaomicron] 59 1e-07
gi|145955220|ref|ZP_01804224.1| hypothetical protein CdifQ_... 59 1e-07
gi|440387|emb|CAA54273.1| nimD [Bacteroides fragilis] 59 1e-07
gi|70559779|emb|CAJ14963.1| NimE nitroimidazole reductase [... 58 3e-07
gi|78356151|ref|YP_387600.1| nitroimidazole resistance prot... 57 4e-07
gi|156859114|gb|EDO52545.1| hypothetical protein BACUNI_041... 57 5e-07
gi|116334304|ref|YP_795831.1| Predicted flavin-nucleotide-b... 56 9e-07
gi|29348487|ref|NP_811990.1| 5-nitroimidazole antibiotic re... 56 9e-07
gi|34556834|ref|NP_906649.1| hypothetical protein WS0404 [W... 54 5e-06
gi|152992543|ref|YP_001358264.1| hypothetical protein SUN_0... 54 6e-06
>gi|34541086|ref|NP_905565.1| nitroimidazole resistance protein, putative [Porphyromonas
gingivalis W83]
gi|34397401|gb|AAQ66464.1| nitroimidazole resistance protein, putative [Porphyromonas
gingivalis W83]
Length = 178
Score = 348 bits (892), Expect = 9e-95, Method: Composition-based stats.
Identities = 178/178 (100%), Positives = 178/178 (100%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE
Sbjct: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI
Sbjct: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRKLVLPD 178
RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRKLVLPD
Sbjct: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRKLVLPD 178
>gi|106893756|ref|ZP_01360880.1| nitroimidazole resistance protein, putative [Clostridium sp.
OhILAs]
gi|106774976|gb|EAT31536.1| nitroimidazole resistance protein, putative [Clostridium sp.
OhILAs]
Length = 187
Score = 175 bits (444), Expect = 8e-43, Method: Composition-based stats.
Identities = 84/173 (48%), Positives = 128/173 (73%), Gaps = 1/173 (0%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MRRKDREMS EFG+E+I++A YGV+++VD + PY++PLSIVRD LYFHSA G KV+
Sbjct: 1 MRRKDREMSAEFGIEIIDKARYGVMTMVDEENKPYSIPLSIVRDENTLYFHSAMDGKKVK 60
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
+F P+ +VFVG V++P+ YT E L+ + + +S+ + ++S +FTT++ESA+VKG+V
Sbjct: 61 IFERNPNVHVVFVGEVKIPENYTKEELDEITKDESK-AVLLISSVFTTEYESAVVKGKVS 119
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRK 173
+ ++ + A++L+CEKYTP KM+ F A++SG+ T +Y+I+I I KRK
Sbjct: 120 LLEGEQDKIKAMKLLCEKYTPTKMEYFHMAIQSGLKRTNVYKIEIAEIKTKRK 172
>gi|118475156|ref|YP_892914.1| nitroimidazole resistance protein, putative [Campylobacter fetus
subsp. fetus 82-40]
gi|118414382|gb|ABK82802.1| nitroimidazole resistance protein, putative [Campylobacter fetus
subsp. fetus 82-40]
Length = 171
Score = 129 bits (324), Expect = 7e-29, Method: Composition-based stats.
Identities = 66/175 (37%), Positives = 107/175 (61%), Gaps = 5/175 (2%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MRR DRE+ R+ L++I+ + Y LS VD G +++P+S+ RDG +++ H A+ G K
Sbjct: 1 MRRSDRELDRQIALKIIDESEYATLSCVDEYGEVFSIPISVARDGMSVFIHGAKTGSKAR 60
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
L+ S T+V V + VP + E +S+++ S L G R+FTT++ SAI +
Sbjct: 61 LYKDGKSVTLVAVSQNRVP-TPSHEFCQSIKDSASELGG----RVFTTEYCSAIATTKAY 115
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRKLV 175
+ EE + ALRL+CEKYTP+ M+ F+ AV+ + +IY +KI ++AK K++
Sbjct: 116 EITQEEEKIEALRLLCEKYTPKYMEYFNTAVQGSLKKISIYELKIMSLSAKAKII 170
>gi|154174410|ref|YP_001408317.1| putative nitroimidazole resistance protein [Campylobacter curvus
525.92]
gi|112803188|gb|EAU00532.1| putative nitroimidazole resistance protein [Campylobacter curvus
525.92]
Length = 171
Score = 125 bits (315), Expect = 7e-28, Method: Composition-based stats.
Identities = 69/175 (39%), Positives = 111/175 (63%), Gaps = 5/175 (2%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MRRKDR++S E LE+++ Y +S++D +G +++P+SIVR+ +++ H AR+G K E
Sbjct: 1 MRRKDRQLSDEDALEIVDDCEYATISLIDDEGEIFSIPISIVREDMSIFIHGARSGMKSE 60
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
L T+V V VP +E E++++ D R GS +IFTT+++ AI+K +V
Sbjct: 61 LLKDGRDVTMVCVSYNHVPQPSQAE-FEAIKD-DGRALGS---KIFTTEYKGAILKTKVY 115
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRKLV 175
V D E +HAL+++CEKYTP M FD A+++ + T IY KI ++AK K++
Sbjct: 116 EVVDDERKIHALKILCEKYTPRYMSGFDTAIKASLDITRIYEFKIQSMSAKAKIL 170
>gi|109672832|ref|ZP_01375066.1| nitroimidazole resistance protein, putative [Campylobacter concisus
13826]
gi|112801741|gb|EAT99085.1| hypothetical protein CCC13826_1824 [Campylobacter concisus 13826]
Length = 176
Score = 109 bits (273), Expect = 6e-23, Method: Composition-based stats.
Identities = 63/175 (36%), Positives = 102/175 (58%), Gaps = 5/175 (2%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MRRKDRE+S + LE+I+ Y V+S VD +G +++P+S VR GE+++ H A AG K +
Sbjct: 1 MRRKDRELSPDEALEIIDNCEYCVISCVDDEGEIFSVPISPVRVGESIFIHGASAGSKAK 60
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
L + V V ++P + SE LE +++ L G ++FTT+++S I K +
Sbjct: 61 LLQNGRKVEFVCVSFNKIPHLNDSE-LEMIKDDGKALGG----KVFTTEYKSTIAKTRAY 115
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRKLV 175
V D + L+++ KYT M FD A E G+ + IY +KI+ ++AK K++
Sbjct: 116 EVTDEAKRYEILKILSLKYTAYAMSTFDVAAEYGLKNMKIYELKIENLSAKAKIL 170
>gi|154496908|ref|ZP_02035604.1| hypothetical protein BACCAP_01201 [Bacteroides capillosus ATCC
29799]
gi|150273866|gb|EDN00979.1| hypothetical protein BACCAP_01201 [Bacteroides capillosus ATCC
29799]
Length = 156
Score = 108 bits (271), Expect = 1e-22, Method: Composition-based stats.
Identities = 59/171 (34%), Positives = 88/171 (51%), Gaps = 23/171 (13%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
+R K+RE EF +V++ Y VLS+ DG PY++PL+ VR GE++YFH A G KV+
Sbjct: 4 VRLKERERGTEFIHQVMDSCVYMVLSMTGVDGLPYSVPLTPVRSGEDIYFHCAPEGEKVD 63
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
P + FVG E + R FT + S + +G
Sbjct: 64 ALRANPRVAMCFVGEAET-----------------------VPRKFTARYSSVLARGTAG 100
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAK 171
V + +E V ALRL+C ++ PE MD FD+ V + +P TA++++ ID K
Sbjct: 101 EVVEQDEKVEALRLLCLRHCPEDMDRFDEVVRAWLPRTAVWKVHIDTAVGK 151
>gi|154149230|ref|YP_001406389.1| putative nitroimidazole resistance protein [Campylobacter hominis
ATCC BAA-381]
gi|153805239|gb|ABS52246.1| putative nitroimidazole resistance protein [Campylobacter hominis
ATCC BAA-381]
Length = 172
Score = 104 bits (260), Expect = 2e-21, Method: Composition-based stats.
Identities = 56/177 (31%), Positives = 100/177 (56%), Gaps = 7/177 (3%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAP--YALPLSIVRDGENLYFHSARAGHK 58
MRR+DR ++ E+I+++ + VLS D P + +P+ IVR G++++ H A+ G K
Sbjct: 1 MRRQDRNLTDIEAFEIIDKSQFAVLSCFDFRNEPEIFTIPILIVRRGKSIFVHGAKLGSK 60
Query: 59 VELFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQ 118
E+F + V V VP+ + L+ +++ RL+G +FTT+++S + K +
Sbjct: 61 AEIFKDNTPVSFVCVSYAHVPE-HDISYLQDIKKDYKRLAG----EVFTTEYKSVVAKTK 115
Query: 119 VIRVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRKLV 175
V ++ + + + L+L+CEKYTP+ MD F A + IY KI ++AK K++
Sbjct: 116 VYKIKNENKKIEILKLLCEKYTPKYMDFFATAAIPALSKINIYEFKIYELSAKAKIL 172
>gi|118745540|ref|ZP_01593512.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding [Geobacter
lovleyi SZ]
gi|118681553|gb|EAV87979.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding [Geobacter
lovleyi SZ]
Length = 152
Score = 86.3 bits (212), Expect = 8e-16, Method: Composition-based stats.
Identities = 55/173 (31%), Positives = 90/173 (52%), Gaps = 25/173 (14%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
+RR DRE++ + +++++ A YG+LS V +DG PY +PLS V G ++YFH A +GHK+E
Sbjct: 4 VRRSDREITPQESIDILDTAEYGILSTVGNDGQPYGVPLSYVHKG-SIYFHCAISGHKLE 62
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
H + VG+ +V L F T++ESA+V G+V
Sbjct: 63 NIEHNAKVSFCVVGKTKV-----------------------LPDKFGTEYESAVVFGRVS 99
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRK 173
V E HAL + EKY + ++ + +E T +++I+I I+ K +
Sbjct: 100 EVNGAERH-HALLWLLEKYCSDFIEEGKRYIEQKDKITKVFKIEIARISGKAR 151
>gi|150006767|ref|YP_001301510.1| 5-nitroimidazole antibiotic resistance protein [Parabacteroides
distasonis ATCC 8503]
gi|149935191|gb|ABR41888.1| 5-nitroimidazole antibiotic resistance protein [Parabacteroides
distasonis ATCC 8503]
Length = 158
Score = 82.0 bits (201), Expect = 1e-14, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 23/173 (13%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
+RRKDR + E + ++ A YG L++ +G Y +P++ V++G+++YFH A G+K+E
Sbjct: 5 IRRKDRILDNELAIRLLEEAEYGFLAMSGINGYGYGIPINYVKEGDSIYFHCAPEGYKLE 64
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
P + VG ++ + FTT +ES I G++
Sbjct: 65 CLRENPKVSFTVVGATQI-----------------------VPGKFTTGYESTIAFGEIH 101
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRK 173
EE +ALRL+ KY+ ++ +K +E T I R+ I I+ K K
Sbjct: 102 LDLPEEERRYALRLLVNKYSSAFKEIGEKYIEKSFYRTNILRLDISHISGKCK 154
>gi|53711709|ref|YP_097701.1| 5-nitroimidazole antibiotic resistance protein [Bacteroides
fragilis YCH46]
gi|60679947|ref|YP_210091.1| putative nitroimidazole resistance-like protein [Bacteroides
fragilis NCTC 9343]
gi|52214574|dbj|BAD47167.1| 5-nitroimidazole antibiotic resistance protein [Bacteroides
fragilis YCH46]
gi|60491381|emb|CAH06129.1| putative nitroimidazole resistance-like protein [Bacteroides
fragilis NCTC 9343]
Length = 167
Score = 79.3 bits (194), Expect = 8e-14, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 87/176 (49%), Gaps = 24/176 (13%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGE-NLYFHSARAGHKV 59
+RRKDR +S + + ++ YGVLS+ ++ Y +P++ V D + ++YFH A GHK+
Sbjct: 8 IRRKDRLLSEDEAMSLLENGEYGVLSISSTEEGVYGIPINYVWDKQQSIYFHCAPEGHKL 67
Query: 60 ELFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQV 119
+ + A+ VGR V +S F+T++ES ++ G +
Sbjct: 68 CILQNCNQASFCVVGRTRV-----------------------VSNQFSTEYESIVINGTM 104
Query: 120 IRVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRKLV 175
I + E AL L+ +KY+PE + K +E T + ++ I +I+ K K +
Sbjct: 105 ICQLEETEKRKALELLLDKYSPEDKKVGLKYIEKSFHRTHVLKLVIKVISGKCKKI 160
>gi|153953134|ref|YP_001393899.1| hypothetical protein CKL_0497 [Clostridium kluyveri DSM 555]
gi|146346015|gb|EDK32551.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
Length = 154
Score = 77.4 bits (189), Expect = 3e-13, Method: Composition-based stats.
Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 24/173 (13%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MRRKDRE+ + +E++ +YG+LS V + PY +P+S V ++YFH A GHK++
Sbjct: 5 MRRKDRELKNDEAIEILKNNSYGILSTVSKNSYPYGVPVSYVFLNNSIYFHCAVKGHKLD 64
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
+ + VG+ +L F+T +ES +V G+ +
Sbjct: 65 NILNNSKVSFCVVGQT-----------------------CILPDKFSTKYESVVVFGRAV 101
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRK 173
+ D E+ AL I KY+P+ ++ +++ T + +I I I+ K +
Sbjct: 102 EIFDDEKNT-ALLEILNKYSPDYIEKGKGYIKNSSKATKVIKISIGHISGKAR 153
>gi|118743668|ref|ZP_01591670.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding [Geobacter
lovleyi SZ]
gi|118683411|gb|EAV89808.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding [Geobacter
lovleyi SZ]
Length = 154
Score = 75.9 bits (185), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/173 (30%), Positives = 77/173 (44%), Gaps = 24/173 (13%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
+RRKDR ++ ++ + YGVLS+ +DG PY LPLS +YFH A G K+
Sbjct: 5 LRRKDRGIAETEARALLQQGEYGVLSLCGADGEPYGLPLSYCVLDNAIYFHCALEGRKLA 64
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
L A+ VG EV + F+T +ES IV G+V
Sbjct: 65 LLADNNQASFCVVGATEV-----------------------VPEKFSTRYESVIVSGRVN 101
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRK 173
D E+ L + +KY PE + + + S T +++I ID I K +
Sbjct: 102 EALDAEK-QRGLEGLTDKYCPEYREKGLQYIASDAARTRVFKISIDTICGKAR 153
>gi|28210610|ref|NP_781554.1| 5-nitroimidazole antibiotic resistance protein [Clostridium tetani
E88]
gi|28203048|gb|AAO35491.1| 5-nitroimidazole antibiotic resistance protein [Clostridium tetani
E88]
Length = 154
Score = 75.5 bits (184), Expect = 1e-12, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 24/173 (13%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MR+K+R ++ +E++N YGVLSV+ ++G PY +P++ V +YFH A G+K++
Sbjct: 5 MRKKERSINISEAMEMLNEGQYGVLSVITNEGYPYGVPINYVYMDNCIYFHCAIEGYKLD 64
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
+ + VG+ E +L F+ +ES I+ G+
Sbjct: 65 SIKLNNNVSFSVVGKTE-----------------------LLPNKFSIKYESVIIFGKAF 101
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRK 173
V D EE + AL + +KY+ E + K V+ T + RI I+ I+ K +
Sbjct: 102 EVFD-EEKITALSSLLDKYSKEYKEAGAKHVKGSGNRTKVIRIDIEHISGKAR 153
>gi|15895740|ref|NP_349089.1| Possible 5-Nitroimidazole antibiotics resistance protein,
NimA-family [Clostridium acetobutylicum ATCC 824]
gi|15025494|gb|AAK80429.1|AE007746_16 Possible 5-Nitroimidazole antibiotics resistance protein,
NimA-family [Clostridium acetobutylicum ATCC 824]
Length = 154
Score = 75.5 bits (184), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 24/173 (13%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MRRK+RE+S + +++ YGVLS + +G PY +P+S V +YFHSA GHK+E
Sbjct: 5 MRRKERELSFKETEKILKSCEYGVLSTIGENGYPYGVPISYVYLNGFIYFHSATEGHKLE 64
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
+ P VG+ S+L FTT++ES +V G
Sbjct: 65 NIENNPKLCFSIVGKT-----------------------SVLPDKFTTNYESVVVFGTAE 101
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRK 173
V + EE L I +KY+ ++ + + T + +I ID I+ K +
Sbjct: 102 EVFN-EEKNEVLLEILKKYSSSYIEKGKVYINTSSIKTRVIKINIDYISGKSR 153
>gi|154249860|ref|YP_001410685.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding
[Fervidobacterium nodosum Rt17-B1]
gi|154153796|gb|ABS61028.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding
[Fervidobacterium nodosum Rt17-B1]
Length = 158
Score = 73.9 bits (180), Expect = 4e-12, Method: Composition-based stats.
Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 28/174 (16%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MRRKDRE+S E E++ A YGVLS + + PY +P++ V DG+ +Y H A GHK+E
Sbjct: 10 MRRKDRELSEEEAYEILKSADYGVLSTYNGE-YPYGVPVNYVFDGKAIYIHCALEGHKIE 68
Query: 61 LFNHEPSATIVFVGRVEV-PDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQV 119
P V E+ PD +T ++SAIV G+
Sbjct: 69 NIKKHPKVCFTVVKNYEILPDE------------------------LSTAYQSAIVFGKA 104
Query: 120 IRVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRK 173
+ + EE + LR + KY+ ++ +K + T + +I+I+ ++ K +
Sbjct: 105 -SLIEGEEKITVLRTLGMKYS-NNLEKIEKEINDSGKATGVIKIEIEYVSGKAR 156
>gi|126699063|ref|YP_001087960.1| putative 5-nitroimidazole reductase [Clostridium difficile 630]
gi|115250500|emb|CAJ68324.1| putative 5-nitroimidazole reductase [Clostridium difficile 630]
Length = 155
Score = 72.4 bits (176), Expect = 1e-11, Method: Composition-based stats.
Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 24/171 (14%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MR K REM++E +EV+ +G S + +G PY + ++ V +++YFH AR GHK++
Sbjct: 5 MRLKKREMTKEDTVEVLKNGEFGTFSTISENGYPYGVAVNYVYFNDSIYFHCARNGHKLD 64
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
+ + + V + S++ F+T + SAIV G+
Sbjct: 65 NISKNNKVSFLVVA-----------------------NESVIPDKFSTTYSSAIVFGKAC 101
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAK 171
V ++EE +AL I +KY+ + K +E M T + +I+ID I+ K
Sbjct: 102 TV-ENEEKKNALVEIIKKYSKGFFEEGMKYIEKDMNLTTVVKIEIDHISGK 151
>gi|150391979|ref|YP_001322028.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding
[Alkaliphilus metalliredigens QYMF]
gi|149951841|gb|ABR50369.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding
[Alkaliphilus metalliredigens QYMF]
Length = 154
Score = 70.5 bits (171), Expect = 4e-11, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 24/171 (14%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
+RRKDRE+ +++I + YG+LS V + PY +P+S V ++YFH A GHK++
Sbjct: 5 LRRKDREIKNNEVIQIIENSDYGILSTVSQNEYPYGVPVSFVFINNSIYFHCATEGHKLD 64
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
+ + VG +L F+T +ES I+ G
Sbjct: 65 NILNNNKVSFCVVGET-----------------------CILPDKFSTKYESVILLGIAN 101
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAK 171
V D E+ AL I +KY+P+ ++ + +++ T + +I I+ I+ K
Sbjct: 102 EVFDDEKNT-ALLEILKKYSPDYIEKGKEYIKNASKATKVIKISIEHISGK 151
>gi|435261|emb|CAA50578.1| nimB [Bacteroides fragilis]
Length = 164
Score = 67.8 bits (164), Expect = 2e-10, Method: Composition-based stats.
Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 24/176 (13%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MRRK + + E + ++ R G L++ DG PYA+P+S V +YFHSA GHKV+
Sbjct: 5 MRRKRQLLPTEESVAILERMTNGTLALHGDDGYPYAVPISYVYADGKIYFHSAMKGHKVD 64
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
+ VE D+ SE FTT F S IV G+
Sbjct: 65 AILQNDKVSFCV---VEQDDIRPSE--------------------FTTYFRSVIVFGKAH 101
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRKLVL 176
+ D E AL L+ +KY+ + + + + G H I +I I+ IT K + L
Sbjct: 102 ILTDELEKRVALGLLADKYSYGEAGM-EAEIAKGFNHLLIVKIAIEHITGKEAIEL 156
>gi|109647021|ref|ZP_01370925.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding
[Desulfitobacterium hafniense DCB-2]
gi|109642267|gb|EAT51821.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding
[Desulfitobacterium hafniense DCB-2]
Length = 163
Score = 67.0 bits (162), Expect = 5e-10, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 24/171 (14%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MRR + +SRE + V++R GVL+ + D PYA+P + V + +YFHSA+AGHK E
Sbjct: 5 MRRSKQLLSREDTVAVMDRCTNGVLACLGDDDYPYAVPFNYVYCNDKIYFHSAKAGHKFE 64
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
P + + +++S +T+ F S I G+
Sbjct: 65 AMMKNPKVSFAVIDE-----------------------DTIVSAEYTSYFRSVIAFGKA- 100
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAK 171
R+ + +E + A + + EKY+ ++ + + S I I ++ IT K
Sbjct: 101 RIVEGDERLEAFQALVEKYSGDQSEEAKQQEISKCTQAYIMAIDVEHITGK 151
>gi|51244162|ref|YP_064046.1| similar to nitroimidazole resistance protein [Desulfotalea
psychrophila LSv54]
gi|50875199|emb|CAG35039.1| related to nitroimidazole resistance protein [Desulfotalea
psychrophila LSv54]
Length = 167
Score = 66.6 bits (161), Expect = 6e-10, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 20/154 (12%)
Query: 1 MRRKDREMSREFGLE-VINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKV 59
MRR+D+E+ ++ +INR L + D PY +PLS DG N+YFH+A+ G K+
Sbjct: 14 MRRRDKEIKERKEIDKIINRCTVCRLGMA-KDNIPYIVPLSFAYDGLNIYFHTAKKGQKI 72
Query: 60 ELFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQV 119
E N + F +++ S+ Q G S F++ +G V
Sbjct: 73 EYINSNSQVCLEFETDIKL----ISDETSPCQWGFS--------------FQTVFCQGMV 114
Query: 120 IRVADHEECVHALRLICEKYTPEKMDLFDKAVES 153
+ + E+ V AL+LI Y+ +K L ++ ++S
Sbjct: 115 TEITNKEKRVEALKLIIAHYSEKKWALDERMLKS 148
>gi|154250291|ref|YP_001411116.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding
[Fervidobacterium nodosum Rt17-B1]
gi|154154227|gb|ABS61459.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding
[Fervidobacterium nodosum Rt17-B1]
Length = 156
Score = 66.2 bits (160), Expect = 7e-10, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 25/173 (14%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MRRKDRE+ + E++ YGVL+ + + PY +P++ DGE +Y H A+ GHK+E
Sbjct: 7 MRRKDRELPEQQTFEILKSGDYGVLATFNGE-YPYGIPVNYAFDGEYIYIHCAKEGHKIE 65
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
+ V E+ L +T +ES I G+
Sbjct: 66 NIKKFSNVCFTIVKSYEI-----------------------LPDELSTAYESVIAFGKAS 102
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRK 173
V + +E AL LI +KY+ ++ + + +I +I+I+ I+ K +
Sbjct: 103 IVENEDEKRGALELIGKKYS-NNLEKIKGEIADSIQRVSIIKIEIEHISGKSR 154
>gi|21229084|ref|NP_635006.1| antibiotic resistance protein [Methanosarcina mazei Go1]
gi|20907638|gb|AAM32678.1| antibiotic resistance protein [Methanosarcina mazei Go1]
Length = 162
Score = 65.9 bits (159), Expect = 9e-10, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 24/174 (13%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MRR + +S E + V+ R GVL+ DG PYA+PLS V +YFHSA+AGHK++
Sbjct: 5 MRRGKQLLSMEDTIAVMTRCTNGVLACSGDDGYPYAVPLSYVYFNGRIYFHSAKAGHKID 64
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
P + + ++ +S+ +TT F S I G+
Sbjct: 65 AITKNPKVSFSIIDEDKI-----------------------VSKEYTTYFRSVIAFGKA- 100
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRKL 174
R+ + +E + + + EKY+ + + S I I ++ IT K +
Sbjct: 101 RIVEGDERLESFTALVEKYSGNQSEEARNKEISRCKQAHIIAIDVEHITGKESI 154
>gi|89896386|ref|YP_519873.1| hypothetical protein DSY3640 [Desulfitobacterium hafniense Y51]
gi|89335834|dbj|BAE85429.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 163
Score = 65.1 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 78/171 (45%), Gaps = 24/171 (14%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MRR + +SRE + V+NR GVL+ + D PYA+PL+ V + +YFH A+AGHK E
Sbjct: 5 MRRGKQLLSREDTVAVMNRCTNGVLACLGDDDYPYAVPLNYVYFNDKIYFHIAKAGHKFE 64
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
P + + +++S +T+ F S I G+
Sbjct: 65 AMIKNPKVSFAVIDE-----------------------DTIVSAEYTSYFRSVIAFGKA- 100
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAK 171
R+ + +E + A + + EKY+ ++ + S I + ++ IT K
Sbjct: 101 RIVEGDERLEAFQALVEKYSGDQSEEAKHREISKCTQAYIMAVDVEHITGK 151
>gi|34557930|ref|NP_907745.1| HYPOTHETICAL PROTEIN-Predicted flavin-nucleotide-binding [Wolinella
succinogenes DSM 1740]
gi|34483648|emb|CAE10645.1| HYPOTHETICAL PROTEIN-Predicted flavin-nucleotide-binding [Wolinella
succinogenes]
Length = 191
Score = 64.7 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 23/166 (13%)
Query: 2 RRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVEL 61
R K +++E E +N A G + +V SDG PY LPL V E +Y H G K+E
Sbjct: 38 RTKTHLLTKEEIKEALNLAQVGRIGIVCSDGFPYVLPLHFVYADEKIYLHGLPKGKKIEG 97
Query: 62 FNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVIR 121
P+ +++ L+EG T+F S I++G+
Sbjct: 98 IKQNPNVCFEI-----------DQMVSLLKEGVENPCD------VNTEFNSVILQGKASL 140
Query: 122 VADHEECVHALRLICEKYTPE--KMDLFDKAVESGMPHTAIYRIKI 165
V D EE AL+ I EK+TP ++ DK ++ TAI RI I
Sbjct: 141 VGDFEEKKSALKRIVEKFTPLLINQEIPDKMIQG----TAIIRIDI 182
>gi|153939571|ref|YP_001390665.1| 5-nitroimidazole antibiotic resistance protein [Clostridium
botulinum F str. Langeland]
gi|152935467|gb|ABS40965.1| 5-nitroimidazole antibiotic resistance protein [Clostridium
botulinum F str. Langeland]
Length = 154
Score = 64.7 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 24/144 (16%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
+RRK+++++ E + ++ ++ YG+LSV ++G Y +PL+ V + +YFH AR G K+E
Sbjct: 5 IRRKEKKLNNEESISLLKKSNYGILSVCLNNGYAYGVPLNFVYNNGAIYFHCAREGQKLE 64
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
N + V VE +L F T++ES I G+
Sbjct: 65 AINENNKVSFSIVNNVE-----------------------LLPSKFDTNYESVITFGKAY 101
Query: 121 RVADHEECVHALRLICEKYTPEKM 144
V + E+ AL + KY+ + +
Sbjct: 102 EVFEDEK-KQALLALINKYSKDYL 124
>gi|24740575|emb|CAD56147.1| nitroimidazole resistance protein [Bacteroides vulgatus]
Length = 152
Score = 64.3 bits (155), Expect = 3e-09, Method: Composition-based stats.
Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 23/141 (16%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MRRK +++S E + ++ R GVL++ +G PYA+P+S V +YFHSA GHKV+
Sbjct: 5 MRRKRQQLSAEESIAILERMTNGVLALHGDEGYPYAVPVSYVYADGKIYFHSAMKGHKVD 64
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
+ V R DV E FTT F S ++ G+
Sbjct: 65 AIMRNERVSFCVVER---DDVCPGE--------------------FTTYFRSVVLFGKTR 101
Query: 121 RVADHEECVHALRLICEKYTP 141
+ + E + AL L+ +KY+P
Sbjct: 102 ILTEEAEKLAALSLLADKYSP 122
>gi|120603106|ref|YP_967506.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding
[Desulfovibrio vulgaris subsp. vulgaris DP4]
gi|120563335|gb|ABM29079.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding
[Desulfovibrio vulgaris subsp. vulgaris DP4]
Length = 155
Score = 64.3 bits (155), Expect = 3e-09, Method: Composition-based stats.
Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 22/173 (12%)
Query: 1 MRRKDREMSREFGL-EVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKV 59
MRR++R M+ E + +V+ A + VLS+V++ PYA+P+ V LY H AR G K
Sbjct: 1 MRRQERMMAEESMVWQVVEEARWMVLSLVEA-ANPYAVPVLFVTGEGCLYVHGAREGRKA 59
Query: 60 ELFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQV 119
L + + VFV EV EG + F+ + SA+ G+
Sbjct: 60 ALLSRGVACCCVFVAEAEV---------RPAPEGAPCCA-------FSLRYRSAVATGRA 103
Query: 120 IRVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKR 172
V D +E L CE+Y L D AV+ M +RI +D + K+
Sbjct: 104 EAVDDADEAARIAGLFCERYGAGDRSLGDAAVDVTM----FWRIAVDSLVGKK 152
>gi|46579334|ref|YP_010142.1| 5-nitroimidazole antibiotic resistance protein, putative
[Desulfovibrio vulgaris subsp. vulgaris str.
Hildenborough]
gi|46448748|gb|AAS95401.1| 5-nitroimidazole antibiotic resistance protein, putative
[Desulfovibrio vulgaris subsp. vulgaris str.
Hildenborough]
Length = 155
Score = 64.3 bits (155), Expect = 3e-09, Method: Composition-based stats.
Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 22/173 (12%)
Query: 1 MRRKDREMSREFGL-EVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKV 59
MRR++R M+ E + +V+ A + VLS+V++ PYA+P+ LY H AR G K
Sbjct: 1 MRRQERMMAEESMVWQVVEEARWMVLSLVEA-ANPYAVPVLFATGEGCLYVHGAREGRKA 59
Query: 60 ELFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQV 119
L + + VFV EV EG + F+ + SA+ G+
Sbjct: 60 ALLSRGVACCCVFVAEAEV---------RPAPEGAPCCA-------FSLRYRSAVATGRA 103
Query: 120 IRVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKR 172
V D +E L CE+Y L D AV++ M +RI +D + K+
Sbjct: 104 EAVDDADEAARIAGLFCERYGAGDRSLGDAAVDATM----FWRIAVDSLVGKK 152
>gi|148378827|ref|YP_001253368.1| nitroimidazole resistance protein [Clostridium botulinum A str.
ATCC 3502]
gi|153933409|ref|YP_001383213.1| nitroimidazole resistance protein NimA [Clostridium botulinum A
str. ATCC 19397]
gi|148288311|emb|CAL82388.1| putative nitroimidazole resistance protein [Clostridium botulinum A
str. ATCC 3502]
gi|152929453|gb|ABS34953.1| nitroimidazole resistance protein NimA [Clostridium botulinum A
str. ATCC 19397]
Length = 164
Score = 63.9 bits (154), Expect = 4e-09, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MRRK++ ++ +++ + GVL+V+ + PYA+P+S + +YFH A+ GHK++
Sbjct: 5 MRRKNQLLTENETIKIFEKGTSGVLAVLGDEDYPYAVPISYIYCDSKIYFHGAKFGHKID 64
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
A+ + V +S +TT F SAI G++
Sbjct: 65 AITKCEKASFCVIDEDNV-----------------------ISEEYTTYFRSAIAFGKIR 101
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRKLVL 176
+ + E +A+ + KYTPE + K +E + + I+ +T K + L
Sbjct: 102 VIENETEKRNAIEKLAAKYTPEDEEGRLKEIEGTYKALCMIELDIEHMTGKEAIEL 157
>gi|435265|emb|CAA50581.1| nimA [Bacteroides vulgatus]
Length = 176
Score = 63.5 bits (153), Expect = 5e-09, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 24/176 (13%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MRRK + + E L ++ R G L++ +G PYA+P+S V +YFH A GHK++
Sbjct: 5 MRRKRQLLPPEESLAILERMTGGTLALHGDNGYPYAVPVSYVYADGKIYFHGAVQGHKMD 64
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
P + VE + +E FTT F S IV G+
Sbjct: 65 AIRQHPEVSFCV---VEQDRIVPAE--------------------FTTYFRSVIVFGKAR 101
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRKLVL 176
+ D E AL + EKY+ + + D+ ++ G H + I ++ +T K + L
Sbjct: 102 ILTDEVEKRAALLRLAEKYSSGESGMQDE-IDKGFDHLVMVEITVEHMTGKEAIQL 156
>gi|148380319|ref|YP_001254860.1| nitroimidazole resistance protein [Clostridium botulinum A str.
ATCC 3502]
gi|148289803|emb|CAL83911.1| putative nitroimidazole resistance protein [Clostridium botulinum A
str. ATCC 3502]
Length = 164
Score = 63.5 bits (153), Expect = 5e-09, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MRRK++ ++ +++ + GVL+V+ + PYA+P+S + +YFH A+ GHK++
Sbjct: 5 MRRKNQLLTENETIKIFEKGTSGVLAVLGDEDYPYAVPISYIYCHSKIYFHGAKFGHKID 64
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
A+ + V +S +TT F SAI G++
Sbjct: 65 AITKCEKASFCVIDEDNV-----------------------ISEEYTTYFRSAIAFGKIR 101
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRKLVL 176
+ + E +A+ + KYTPE + K +E + + I+ +T K + L
Sbjct: 102 VIENETEKRNAIEKLAAKYTPEDEEGRLKEIEGTYKALCMIELDIEHMTGKEAIEL 157
>gi|148265539|ref|YP_001232245.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding [Geobacter
uraniumreducens Rf4]
gi|146399039|gb|ABQ27672.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding [Geobacter
uraniumreducens Rf4]
Length = 154
Score = 63.5 bits (153), Expect = 5e-09, Method: Composition-based stats.
Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 24/173 (13%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
+RR +R ++ E++ R YG+LS G PY +PLS +YFH A GHK+E
Sbjct: 5 LRRTERGIAETEARELLERGEYGILSTCGLAGQPYGIPLSYCVMNNAIYFHCAVEGHKLE 64
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
+ + VG+ EV L F T +ES I+ G
Sbjct: 65 NIAADSRVSFCVVGKTEV-----------------------LPDQFATRYESVIISGSAA 101
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRK 173
V D E+ + AL + KY+ + + + T ++RI I+ I K +
Sbjct: 102 EVFDGEK-LQALEGLLAKYSAGFHAEGLQYIAAQGGRTRVFRIGIEAICGKAR 153
>gi|7327848|emb|CAB82516.1| nitroimidazole resistance protein [Bacteroides fragilis]
gi|78271548|emb|CAJ41288.1| nitroimidazole resistance protein [uncultured bacterium]
Length = 153
Score = 63.5 bits (153), Expect = 5e-09, Method: Composition-based stats.
Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 24/171 (14%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MRRK + + +E + ++ + G L++ +G PYA+PLS V +YFH A+ GHKV+
Sbjct: 5 MRRKRQLLPQEESVAILEKMTNGTLALHGDNGYPYAVPLSYVYADGKIYFHCAKIGHKVD 64
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
+ VE ++ +E FTT F S IV G+
Sbjct: 65 AIMQNNKVSFCV---VEQDNIKPAE--------------------FTTYFRSVIVFGKAY 101
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAK 171
+ D E AL L+ KY+ + L D+ +S H + +I I+ +T K
Sbjct: 102 ILTDETEKRMALTLLMNKYSFGEPGLSDEIAKS-FNHLLMVKIDIEHMTGK 151
>gi|46325892|gb|AAS88128.1| nitroimidazole resistance protein [Veillonella sp. ADV 310.99]
Length = 149
Score = 61.6 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 24/169 (14%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MRRK + + +E + ++ + G L++ +G PYA+PLS V +YFH A+ GHKV+
Sbjct: 5 MRRKRQLLPQEESVAILEKMTNGTLALHGDNGYPYAVPLSYVYADGKIYFHCAKIGHKVD 64
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
+ VE ++ +E FTT F S IV G+
Sbjct: 65 AIMQNNKVSFCV---VEQDNIKPAE--------------------FTTYFRSVIVFGKAY 101
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMIT 169
+ D E AL L+ KY+ + L D+ +S H + +I I+ +T
Sbjct: 102 ILTDETEKRMALTLLVNKYSFGEPGLSDEIAKS-FNHLLMVKIDIEHMT 149
>gi|150390037|ref|YP_001320086.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding
[Alkaliphilus metalliredigens QYMF]
gi|149949899|gb|ABR48427.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding
[Alkaliphilus metalliredigens QYMF]
Length = 85
Score = 61.2 bits (147), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
+RRKDRE+ +++I + YG+LS V +G PY +P+S V ++YFH A GHK++
Sbjct: 5 LRRKDREIKNNEVIQIIENSDYGILSTVSQNGYPYGVPVSFVFINNSIYFHCATEGHKLD 64
Query: 61 --LFNHEPSATIV 71
L N++ S +V
Sbjct: 65 NILNNNKVSFCVV 77
>gi|78271546|emb|CAJ41287.1| nitroimidazole resistance protein [uncultured bacterium]
Length = 153
Score = 61.2 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 24/171 (14%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MRRK + + +E + ++ + G L++ +G PYA+PLS +YFH A+ GHKV+
Sbjct: 5 MRRKRQLLPQEESVAILEKMTNGTLALHGDNGYPYAVPLSYFYADGKIYFHCAKIGHKVD 64
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
+ VE ++ +E FTT F S IV G+
Sbjct: 65 AIMQNNKVSFCV---VEQDNIKPAE--------------------FTTYFRSVIVFGKAY 101
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAK 171
+ D E A+ L+ KY+ + L D+ +S + H + +I I+ +T K
Sbjct: 102 ILTDETEKRMAMTLLVNKYSFGEPGLSDEIAKS-INHLLMEKIDIEHMTGK 151
>gi|148379291|ref|YP_001253832.1| 5-nitroimidazole antibiotic resistance protein [Clostridium
botulinum A str. ATCC 3502]
gi|153932919|ref|YP_001383666.1| 5-nitroimidazole antibiotic resistance protein [Clostridium
botulinum A str. ATCC 19397]
gi|153937003|ref|YP_001387215.1| 5-nitroimidazole antibiotic resistance protein [Clostridium
botulinum A str. Hall]
gi|148288775|emb|CAL82859.1| putative 5-nitroimidazole antibiotic resistance protein
[Clostridium botulinum A str. ATCC 3502]
gi|152928963|gb|ABS34463.1| 5-nitroimidazole antibiotic resistance protein [Clostridium
botulinum A str. ATCC 19397]
gi|152932917|gb|ABS38416.1| 5-nitroimidazole antibiotic resistance protein [Clostridium
botulinum A str. Hall]
Length = 154
Score = 60.8 bits (146), Expect = 3e-08, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 24/144 (16%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
+RRK+++++ E + ++ + YG+LSV ++G Y +PL+ V +YFH A+ G K+E
Sbjct: 5 IRRKEKKLNNEESISLLKESNYGILSVCLNNGYAYGVPLNFVYSNGAIYFHCAKEGQKLE 64
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
N + V VE +L F T++ES I G+
Sbjct: 65 AINGNDKVSFSIVNNVE-----------------------LLPSKFDTNYESVITFGKAY 101
Query: 121 RVADHEECVHALRLICEKYTPEKM 144
V + E+ AL + KY+ + +
Sbjct: 102 EVFEDEK-KQALLALINKYSKDYL 124
>gi|153810923|ref|ZP_01963591.1| hypothetical protein RUMOBE_01309 [Ruminococcus obeum ATCC 29174]
gi|149832811|gb|EDM87894.1| hypothetical protein RUMOBE_01309 [Ruminococcus obeum ATCC 29174]
Length = 163
Score = 60.8 bits (146), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 26/173 (15%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGE--NLYFHSARAGHK 58
+RRK +EM + E++ + GVL+V DG PYA+P++ D + +YFH AR GHK
Sbjct: 10 IRRKKKEMDIDAAKELLQCSRRGVLAVNGDDGYPYAVPVNYFYDSDAGKIYFHGARVGHK 69
Query: 59 VELFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQ 118
V+ + S + F VY +E ++ ++ +S +V G+
Sbjct: 70 VDAL--KASDKVCFT-------VYGNETIK--------------EEVWAPFVQSTVVFGR 106
Query: 119 VIRVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAK 171
V E L+ + KY P + L D+ +E ++ I+I+ I+ K
Sbjct: 107 CHLVEKGAEATEILKKLAAKYYPNE-QLIDEEIERSGKAVQLFEIEIEHISGK 158
>gi|106894571|ref|ZP_01361689.1| Pyridoxamine 5'-phosphate oxidase-related, FMN-binding [Clostridium
sp. OhILAs]
gi|106774170|gb|EAT30736.1| Pyridoxamine 5'-phosphate oxidase-related, FMN-binding [Clostridium
sp. OhILAs]
Length = 154
Score = 59.3 bits (142), Expect = 9e-08, Method: Composition-based stats.
Identities = 51/172 (29%), Positives = 79/172 (45%), Gaps = 26/172 (15%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MRRKDRE+ RE E++ + YG LS + +G PY +P+S V ++YFH A GHK+E
Sbjct: 5 MRRKDREIGREEIEEILVKGEYGFLSTISGNGYPYVVPISFVYYNNSIYFHCATDGHKLE 64
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
+ + EV L R FTT ++S I G
Sbjct: 65 NIKNNNKVSFSVAVDTEV-----------------------LPRKFTTKYQSIIAFGTAR 101
Query: 121 RV-ADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAK 171
+ D +E AL + +KY+ + + K + + T + +I+I+ IT K
Sbjct: 102 EIEGDLKE--EALFELIKKYSQQFLTEGKKYLHNAKDKTRVMKIEIEHITGK 151
>gi|124485827|ref|YP_001030443.1| hypothetical protein Mlab_1007 [Methanocorpusculum labreanum Z]
gi|124363368|gb|ABN07176.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding
[Methanocorpusculum labreanum Z]
Length = 154
Score = 59.3 bits (142), Expect = 9e-08, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 70/166 (42%), Gaps = 23/166 (13%)
Query: 4 KDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVELFN 63
KD ++S E ++ AA GVL D+DG+PY +P+ V + +Y H AG K E
Sbjct: 2 KDHQLSEEEITYLLENAASGVLGTSDADGSPYCVPVHFVYLDKKIYIHGLTAGEKTENIQ 61
Query: 64 HEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVIRVA 123
+P VY L E S S T ++S +VKG I V
Sbjct: 62 RDPRVCFT---------VYRMGELLYSAEAKSPCS-------VNTAYQSVVVKGSAILVD 105
Query: 124 DHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMIT 169
D + L + +KYTP+ L M TA+ + + +IT
Sbjct: 106 DLQAKREILDAVVKKYTPQLACL-------SMQETAVMQTAVIVIT 144
>gi|67477322|ref|XP_654156.1| 5-nitroimidazole antibiotic resistance protein [Entamoeba
histolytica HM-1:IMSS]
Length = 165
Score = 59.3 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 26/171 (15%)
Query: 3 RKDREMSREFGLEVINRAAYGVLSVVDSDG-APYALPLSIVRDG-ENLYFHSARAGHKVE 60
RK+ + +E+I YG ++++D + + Y +P++ DG +NLYFH G K+
Sbjct: 16 RKNSGIEETRAIEIIKNGEYGFMAMIDDENNSGYGVPINYAFDGVQNLYFHGGN-GKKIN 74
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
+ P + VG+ + + FT +ES + G +
Sbjct: 75 ILKKNPKVSFTIVGKTLI-----------------------VPEQFTDHYESVMCFGTIC 111
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAK 171
EE + + LI +KY+ E + K V S + ++Y++ I+ + K
Sbjct: 112 FDLSKEEKIKGMELIIDKYSSEYKEKGMKMVASAIDKMSVYKLVINSFSGK 162
>gi|440393|emb|CAA54269.1| nimC [Bacteroides thetaiotaomicron]
Length = 163
Score = 58.9 bits (141), Expect = 1e-07, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 24/176 (13%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MR K E+ + + ++ R G L++ PYA+P+S V +YFH+A GHKV+
Sbjct: 5 MRPKRHELPTDESVGILKRMTNGTLALHGDGDYPYAVPVSYVYSDGRIYFHTATQGHKVD 64
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
+ VE DV ++E FTT F S I G+
Sbjct: 65 ALMRNDKVSFCV---VEQDDVKSAE--------------------FTTYFRSVIPFGRAR 101
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRKLVL 176
+ D E AL+L+ +KY+ M + + G H + I I+ +T K + L
Sbjct: 102 ILTDETENGAALQLLADKYS-SGMPGLEAVIAKGFRHLLMVEIDIEHLTGKESIEL 156
>gi|145955220|ref|ZP_01804224.1| hypothetical protein CdifQ_04001635 [Clostridium difficile
QCD-32g58]
Length = 120
Score = 58.9 bits (141), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 24/138 (17%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MR K REM++E +EV+ +G S + +G PY + ++ V +++YFH AR GHK++
Sbjct: 5 MRLKKREMTKEDTVEVLKNGEFGTFSTISENGYPYGVAVNYVYFNDSIYFHCARNGHKLD 64
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
+ + + V + S++ F+T + SAIV G+
Sbjct: 65 NISKNNKVSFLVVA-----------------------NESVIPDKFSTTYSSAIVFGKAC 101
Query: 121 RVADHEECVHALRLICEK 138
V ++EE +AL I +K
Sbjct: 102 TV-ENEEKKNALVEIIKK 118
>gi|440387|emb|CAA54273.1| nimD [Bacteroides fragilis]
Length = 164
Score = 58.9 bits (141), Expect = 1e-07, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 28/178 (15%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
M RK + + E + ++ R G L++ DG PYA+P+S V +YFHSA G KV+
Sbjct: 5 MPRKRQLLPTEESVAILERMTNGTLALHGDDGYPYAVPVSYVYADGKIYFHSAMQGPKVD 64
Query: 61 --LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQ 118
L N + S + VE +V +E FTT F S IV G+
Sbjct: 65 AILRNDKVSFCV-----VEQDEVKPAE--------------------FTTYFRSVIVFGK 99
Query: 119 VIRVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRKLVL 176
+ D E +AL L+ +KY+ + + + + G H + I ++ +T K + L
Sbjct: 100 ARILTDENEKRNALNLLADKYSHGEAGM-EAEMAKGFNHLLMIEITVEQMTGKEAIEL 156
>gi|70559779|emb|CAJ14963.1| NimE nitroimidazole reductase [Bacteroides fragilis]
Length = 145
Score = 57.8 bits (138), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 24/165 (14%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MRRK + + +E + ++ + G L++ +G PYA+PLS +YFH A+ GHKV+
Sbjct: 5 MRRKRQLLPQEESVAILEKMTNGTLALHGDNGYPYAVPLSYFYADGKIYFHCAKIGHKVD 64
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
+ VE ++ +E FTT F S IV G+
Sbjct: 65 AIMQNNKVSFCV---VEQDNIKPAE--------------------FTTYFRSVIVFGKAY 101
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKI 165
+ D E A+ L+ KY+ + L D+ +S + H + +I I
Sbjct: 102 ILTDETEKRMAMTLLVNKYSFGEPGLSDEIAKS-INHLLMVKIDI 145
>gi|78356151|ref|YP_387600.1| nitroimidazole resistance protein, putative [Desulfovibrio
desulfuricans G20]
gi|78218556|gb|ABB37905.1| nitroimidazole resistance protein, putative [Desulfovibrio
desulfuricans G20]
Length = 156
Score = 57.0 bits (136), Expect = 4e-07, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 22/174 (12%)
Query: 1 MRRKDREMSREFGLE-VINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKV 59
M R +RE + +E +++RA + +S+V G PYA+PL+ G LY H A G K+
Sbjct: 1 MHRHNRETTSPETIEAILSRATWCTVSMVTPQGTPYAVPLNYGHQGTTLYAHCALRGTKL 60
Query: 60 ELFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQV 119
++ H P RV V V + + + + +G+ F S + G
Sbjct: 61 DILRHNP--------RVWVTVVSNAVFYDGGPDAGACKAGTF--------FSSLMASGTA 104
Query: 120 IRVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRK 173
+ +E +HA++ + +++ + D+ + M T + RI + IT K +
Sbjct: 105 QIITAEDERLHAMQCLLQQF-----GIADRPLGDAMRVTTLIRIDLGDITTKER 153
>gi|156859114|gb|EDO52545.1| hypothetical protein BACUNI_04162 [Bacteroides uniformis ATCC 8492]
Length = 158
Score = 56.6 bits (135), Expect = 5e-07, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 21/157 (13%)
Query: 15 EVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVELFNHEPSATIVFVG 74
E+I + Y ++ + D +G PYA+P++ +Y HS G KVE+ P I F
Sbjct: 14 EIIRKCPYCIVGITDLEGNPYAVPMNFAYQDGVIYLHSGPEGSKVEMVTKHPQVCITFCE 73
Query: 75 RVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVIRVADHEECVHALRL 134
E+ VY + S SM SR S I +G+V V D EE L +
Sbjct: 74 GHEL--VYMHRQVAC--------SYSMKSR-------SVICRGKVHFVEDMEEKRRVLDM 116
Query: 135 ICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAK 171
+ ++YT + K E + + I+ +K++ I+ +
Sbjct: 117 LMKQYTENEC----KYAEPAVRNVKIWEVKVEKISCR 149
>gi|116334304|ref|YP_795831.1| Predicted flavin-nucleotide-binding protein [Lactobacillus brevis
ATCC 367]
gi|116099651|gb|ABJ64800.1| Predicted flavin-nucleotide-binding protein [Lactobacillus brevis
ATCC 367]
Length = 161
Score = 56.2 bits (134), Expect = 9e-07, Method: Composition-based stats.
Identities = 44/171 (25%), Positives = 68/171 (39%), Gaps = 23/171 (13%)
Query: 1 MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
MR + ++ E V+ R GVL+V G PYA+PLS DG + YFH A GHK+
Sbjct: 5 MRLANEALTPEQINTVLQRRTAGVLAVHGDAGYPYAVPLSYYFDGTHFYFHGAPVGHKMA 64
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
+ + V R DV L T +F S I G+V
Sbjct: 65 AIQRDNRVSFCVVDR----DVVAPAAL-------------------TNEFRSVIAFGRVT 101
Query: 121 RVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAK 171
V D + +R P+ + ++ G+ H ++ + + +T K
Sbjct: 102 IVTDPKRKRELMRQFALHLAPDYAQKIHQHLDQGLDHFSLLEMTVAHMTGK 152
>gi|29348487|ref|NP_811990.1| 5-nitroimidazole antibiotic resistance protein [Bacteroides
thetaiotaomicron VPI-5482]
gi|29340391|gb|AAO78184.1| 5-nitroimidazole antibiotic resistance protein [Bacteroides
thetaiotaomicron VPI-5482]
Length = 159
Score = 55.8 bits (133), Expect = 9e-07, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 23/157 (14%)
Query: 16 VINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVELFNHEPSATIVF-VG 74
+I +A + + D +G PY +P++ + + LY HS G K+E+ + I F +G
Sbjct: 15 IILQADACFVGITDLEGNPYVVPMNFGYENDTLYLHSGPEGGKIEMLQRNNNVCITFSLG 74
Query: 75 RVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVIRVADHEECVHALRL 134
V Q S SM S ESA+ +G+V + D EE HAL +
Sbjct: 75 HKLV-----------YQHKQVACSYSMRS-------ESAMCRGKVEFIEDMEEKRHALDI 116
Query: 135 ICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAK 171
I YT ++ D AV + ++++ +D +T K
Sbjct: 117 IMRHYTKDQFSYSDPAVR----NVKVWKVPVDQMTGK 149
>gi|34556834|ref|NP_906649.1| hypothetical protein WS0404 [Wolinella succinogenes DSM 1740]
gi|34482549|emb|CAE09549.1| hypothetical protein [Wolinella succinogenes]
Length = 198
Score = 53.5 bits (127), Expect = 5e-06, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 18/142 (12%)
Query: 3 RKDREMSREFGL--EVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVE 60
R+D S + L E++ R YG L++ DS PYALP++ GE + FH A+AG K E
Sbjct: 2 RRDEFASYDPNLLQEILQRCDYGTLALFDSK--PYALPINFASHGEKIVFHGAKAGRKFE 59
Query: 61 LFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVI 120
+ + P + V +P + S SG+ L+ T F SA + G+V
Sbjct: 60 ILSQRPLVALSVV----LPYAFIP----------SHFSGTSLACPATQFFISAHLSGEVE 105
Query: 121 RVADHEECVHALRLICEKYTPE 142
V D + L + +K E
Sbjct: 106 LVRDSDLACVFLESLMQKMQKE 127
>gi|152992543|ref|YP_001358264.1| hypothetical protein SUN_0949 [Sulfurovum sp. NBC37-1]
gi|151424404|dbj|BAF71907.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 201
Score = 53.5 bits (127), Expect = 6e-06, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 18/129 (13%)
Query: 16 VINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVELF--NHEPSATIVFV 73
+++RA YGVL + DG PY +P++ VR E L+FH +R G K+E+ N E S ++V
Sbjct: 16 LLDRAEYGVLGL-SGDGKPYTVPVNFVRIDEALFFHGSRKGRKIEMLTSNAEVSFSVVES 74
Query: 74 GRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVIRVADHEECVHALR 133
+ +P ++S L+ T F+S ++GQV + + +E +
Sbjct: 75 ASL-IPSFFSST--------------GGLACPATQFFKSVHIEGQVEIIGNRDEKRNIFV 119
Query: 134 LICEKYTPE 142
+ EK+ PE
Sbjct: 120 KLMEKFQPE 128
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.320 0.136 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 603,267,001
Number of Sequences: 5470121
Number of extensions: 22457631
Number of successful extensions: 51626
Number of sequences better than 1.0e-05: 56
Number of HSP's better than 0.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 51550
Number of HSP's gapped (non-prelim): 56
length of query: 178
length of database: 1,894,087,724
effective HSP length: 124
effective length of query: 54
effective length of database: 1,215,792,720
effective search space: 65652806880
effective search space used: 65652806880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)