prokMSA_id: 159919
prokMSAname: Escherichia coli str. F4-2
GenBank ACCESSION: DQ645479.1
GenBank GI: 109156744
Pubmed/Medline:
RDP_id: S000712265
NCBI_tax_id: 562
Study_id: 28039
Chimera Test Result
bellerophon=over 97% similar to a Core Set template along >1250 nt, not chimeric
bel3_div_ratio=
G2_chip_tax_string=Unclassified
Hugenholtz_tax_string=Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales_Enterobacteriaceae
Ludwig_tax_string=Unclassified
Pace_tax_string=Unclassified
RDP_tax_string=Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter
ncbi_tax_string=Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia
authors(alphabetically)=Chen,C., Long,W., Xu,B.
blast_perc_ident_to_template=97.4
contact_info=Chemical and Environmental Engineering, Beijing Technology and Business University, Fucheng Road 11#, Haidian District, Beijing 100037, China
create_date=21-JUN-2006
decision=named_isolate
description=Escherichia coli 16S ribosomal RNA gene, partial sequence
isolation_source=fermented liquid
longest_insertion=1
ncbi_acc=DQ645479
non_ACGT_percent=0.0000
organism=Escherichia coli
perc_ident_to_invariant_core=99.2
prokMSA_id=159919
prokMSAname=Escherichia coli str. F4-2
small_gap_intrusions=4
source=Escherichia coli
span_aligned=1..1432
strain=F4-2
submit_date=16-MAY-2006
template=9760
timestamp=20090128211209
title=Molecular taxonomic study on Escherichia coli
unaligned_length=1432
update_date=21-JUN-2006
>Escherichia coli str. F4-2 prokMSA_id:159919 DQ645479.1
CTAACACATGCAAGTCGAACGGTAACAGGAAGCAGCTTGCTGCTTCGCTG
ACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGG
GATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAA
GAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAG
CTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTG
AGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGG
GAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCCA
TGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGG
AGGAAGGCGATGTGGTTAATAACCGCGTCGATTGACGTTACCCGCAGAAG
AAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAA
AGCGTTAATCGGGAATTACTGGGCGTAAAGCGCAACGCAGGCGGTCTGTC
AAGTCGAATGTGAAATCCCCGGCTCAAACCTGGGAACTGCATCCGAAACT
GGCAGGCTTGATTCTCGTAGAGGGGGGTAGAATTCCAGGTGTAGCGGTGA
AATGCGTAGAGATCTGGAGGAATACCGGTGGCGAAGGCGGCCCCCTGGAC
GAAGACTGACGCTCAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGATA
CCCTGGTAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTG
AGGCGTGGCTTCCGGAGCTAACGCGTTAAGTCGACCGCCTGGGGAGTACG
GCCGCAAGGTTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTG
GAGCATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGTTCTTGA
CATCCACAGAACTTGGCAGAGATGCCTTGGTGCCTTCGGGAACTGTGAGA
CAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAG
TCCCGCAACGAGCGCAACCCTTATCCTTTGTTGCCAGCGGTTAGGCCGGG
AACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGT
CAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCG
CATACAAAGAGAAGCGATCTCGCGAGAGCTAGCGGACCTCATAAAGTGCG
TCGTAGTCCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGC
TAGTAATCGTGAATCAGAATGTCACGGTGAATACGTTCCCGGGCCTTGTA
CACACCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCT
TAACCTTCGGGAGGGCGCTTACCACTTTGTGA
>Escherichia coli str. F4-2 prokMSA_id:159919 DQ645479.1
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........................C-T--AACACA-T-GC-A-AGT-CGA
-A-CG----------G-TAA-CA-G-------------------------
---GAAG-C-AG--------------------------------------
--------------CTT-G-------------------------------
--------------------------------------------------
-CTG-CTTC----------------G-CT--G--AC--G--AG-T-GG-C
-GG-A--C-------------GGG-TGAGT-A--AT-GT-C-T-G-GG--
-A-A--A-CT-G--C-C-TGA--TG-G-----------------------
-------------------------------------------A-GG---
-GGG-AT-AA-CTA-------------------------C-T-G------
-----------------GAA-A---CGG-TAG-CTAA-TA---CC-G--C
-AT-A----------A--------------------C-------------
------------------------GT-C----------------------
--------------------------------------------------
-----------------------------------------------G-C
A-A-----------------------------------------------
--------------------------------------------------
-------------------------------------G-A-C--------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
---------------------------CAAA--G-A-G-GG-----G--G
A-C--C--------------------------------------------
--------------------------------------------------
----------------------TTC-G-----------------------
--------------------------------------------------
---------------------------------------------G-G--
CC-TC--T---T-G--------------C----C-A---T-CA-G---AT
---G-T-----G-CCC-AGA--T-GGG--A------TT--A--G-CT-A-
---G---TAGG-T-G-GG-G-T----AAC-GG-C-T-C-ACCT--A-GG-
C-G--A-CG-A------------TCC-C-T------AG-CT-G-G-TCT-
G-AG----A--GG-AT--G-AC-C-AG-CCAC-A-CTGGA--A-C-TG-A
-GA-C-AC-G-G-TCCAGA-CTCC-TAC-G--G-G-A-G-GC-A-GC-A-
G-TG---GG-G-A-ATA-TTGCA-C-AA-T-GG--GC-GC-A----A-G-
CC-T-GA-TG-CA-GCCA-TGCC-G-CG-T---G-T-A--T--GA-A-G-
-A--A-G-G-CC-----TT-CG---------G-G-T-T-G-T--A---AA
-G-TAC--------TT-TC-A-G--C-GGG----GA-G--G---AA-GGC
G---ATGT-GG----T--T--AA-T---A----A-----CC-G-CGT-CG
A-TT-GA-CG-TT-A-C-CC-G-CA-G---------AA-----------G
AAGC-ACC-GG-C-TAA---C--T-CCGT--GCCA--G-C---A--GCCG
---C-GG--TA-AT--AC---GG-AG-GGT-GCA-AAG-CG-TTAA-T-C
GGGAA-TT-A--C-T--GGGC-GTA----AA-GCGCAAC--G-CA-G-G-
C-G------------G--T-CT-G-T-C-AA----G-T-C-G---A-ATG
-TG-A-AA-TC--CC-CGG-C-----------------------------
---------------------------------------TC-A-AA----
--------------------------------------------------
-------------------CC-T-G-GG-AA-C----T-G-C-A-T-C--
------C--GA-A-A-C-T-G-GCA--G-G-C------------------
--------------------------------------------------
--------------------------------------------------
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--------------------------------------------------
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--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
---------------------T-T-G-A-T-T-C-----T-CG--TA-G-
A------------G-GG-G-GG-T----AG--AATT-CCA-G-GT--GT-
A-GCG-GTGAAA-TG-CGT-AGAG-A-TC-T-GGA--GG-A-AT-A-CC-
GG--T--G--GC-GAA-G--G-C---G----G--C-C-CCCTG------G
-AC-GA--------------------------------------------
------------------AG-A-C-T--GA--CG-----CT-CA-GG--T
-G-CGA--AA-G-C--------------G-TGGG-GAG-C-A-AACA--G
G-ATTA-G-ATA-C-----CC-T-G-GTA-G-T----C-CA--C-G-CCG
-T-AAA--C-GATG-TC--GA-CT---------T-GG--A--G-G-TT-G
-TG-C--C------------------------------------------
--------------------------------------------CTT-GA
--------------------------------------------------
--------------------------------------------------
----------------------------------------------G-G-
C-GT--G-G-C-T-TC-C------GG--A----GC-TAA--CG-C-G-T-
-T--AA-GT--C----G-ACC-GCC-T-G-GG-GAG-TA---CGG-----
C-C--G-C-A-A-GGT-T--AAA-ACTC-AAA---------TGAA-TTG-
ACGGG-G-G-CCCG----C-A--C-A-A-GCG-GT-G--G--AG-CA-T-
-GT-GGT-TT-AATT-C-G-ATG-CAAC-G-CG-A-AG-A-A-CC-TT-A
-CC-TGTTC-TT-G-AC-A-T-C--------------CAC-A-G------
-------A-AC-T-T-G--GC--A-GA-G-A-T--G-C-C--T-T-G-G-
-T-G-----CC-------------------------------------T-
-TC-G------------------------------------------GG-
---A----A---CT-GTG---A--GA------------------------
---------------------------C-A-G-G-T-GCTG-CA-TGG-C
T--GTC-GTC-A-GC-TC---G-TG-TT-G--TGA-AA-TGT-T-GG-G-
TT-AA-GT-CCCGC-AA--------C-GAG-CGC-A-ACC-C-T-TA--T
C--C-TTTG--T-T-G-C-C---AG-C-G--G--T---------------
--------------------------------------------------
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----------------TAG-------------------------------
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--------------------------------------------------
-----------------------------G----C----C-G--------
----G----G---A-A--CT---------------C-A-A-A-G-GA-G-
-AC-T-G-CCA--G-T----------------------------------
--G-A---TAA----------------------------------A-C-T
-G--G-A-GG-A--AGG-T--GGGG-A-TGAC-GTC--AAGT-C---ATC
-A-T-G-G-C-C-CTT----AC-G--AC-C-A-GG-GC-TA-CAC-ACGT
G-C--TA--CAATG---G-CGCA-T-A--C-AAA-GA-GA----------
--------------------------------------------------
--------------------------------------A-G-C-G-A--T
-CTCG-C--G---------------------------------------A
-GA-G-C-----------T--A-G-CG---G----------A--CCT-C-
-----A-T-AAAGT-GC-G-T-C-G-TAG-TCC--------GGA-T-TGG
AG-TC--T-GCAA-CT-C--------------------------------
--------------------------------------------------
---------------G-ACTCC-A-T-G-AA-G-TC-GGAAT-CG-C-TA
--G-TA-AT-C-G-T----GAA-TC-A-G--A------AT--GTC-AC-G
-GT-G-AAT-ACGT-T-CCCGGGCCT-TGTA----CACACCG-CCC-GTC
-----A---CA--CCA-TG-GG-A--G---TGG-G-TT-GC-AAA--A-G
AA------G--T-AGG-TA-G-C-T-T-AA-C-C----------------
---------------------------------------------T-TC-
G-------------------------------------------------
--------------------------------------------------
---GG-A--GG-G--C---GC-TTA--CC--ACT-T----T-GTG-A...
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