MERNA
A Database of Metal Ion Binding Sites in RNA
There are 102 records.
| pdb_id |
Metal -> |
abbreviation |
metal_name |
atom_no |
res_no |
RNA Ligand -> |
element_id |
distancemrna |
rnaligand |
atom_no |
res_no |
chain |
rnabase |
| 1VQM |
|
Cd |
Cadmium |
91323 |
9201 |
|
M14512 |
5.551 |
N |
84594 |
6 |
U |
CYS6 |
| 1VQM |
|
Cd |
Cadmium |
91323 |
9201 |
|
M14512 |
5.351 |
O |
84597 |
6 |
U |
CYS6 |
| 1VQM |
|
Cd |
Cadmium |
91323 |
9201 |
|
M14512 |
2.469 |
SG |
84599 |
6 |
U |
CYS6 |
| 1VQM |
|
Cd |
Cadmium |
91323 |
9201 |
|
M14512 |
5.23 |
N |
84608 |
8 |
U |
TYR8 |
| 1VQM |
|
Cd |
Cadmium |
91323 |
9201 |
|
M14512 |
5.964 |
O |
84611 |
8 |
U |
TYR8 |
| 1VQM |
|
Cd |
Cadmium |
91323 |
9201 |
|
M14512 |
3.779 |
N |
84620 |
9 |
U |
CYS9 |
| 1VQM |
|
Cd |
Cadmium |
91323 |
9201 |
|
M14512 |
5.877 |
O |
84623 |
9 |
U |
CYS9 |
| 1VQM |
|
Cd |
Cadmium |
91323 |
9201 |
|
M14512 |
2.518 |
SG |
84625 |
9 |
U |
CYS9 |
| 1VQM |
|
Cd |
Cadmium |
91323 |
9201 |
|
M14512 |
4.907 |
N |
84626 |
10 |
U |
GLY10 |
| 1VQM |
|
Cd |
Cadmium |
91323 |
9201 |
|
M14512 |
5.313 |
N |
84630 |
11 |
U |
THR11 |
| 1VQM |
|
Cd |
Cadmium |
91323 |
9201 |
|
M14512 |
5.644 |
O |
84633 |
11 |
U |
THR11 |
| 1VQM |
|
Cd |
Cadmium |
91323 |
9201 |
|
M14512 |
4.309 |
OG1 |
84635 |
11 |
U |
THR11 |
| 1VQM |
|
Cd |
Cadmium |
91323 |
9201 |
|
M14512 |
4.074 |
N |
84788 |
32 |
U |
CYS32 |
| 1VQM |
|
Cd |
Cadmium |
91323 |
9201 |
|
M14512 |
5.857 |
O |
84791 |
32 |
U |
CYS32 |
| 1VQM |
|
Cd |
Cadmium |
91323 |
9201 |
|
M14512 |
2.502 |
SG |
84793 |
32 |
U |
CYS32 |
| 1VQM |
|
Cd |
Cadmium |
91323 |
9201 |
|
M14512 |
4.768 |
N |
84794 |
33 |
U |
SER33 |
| 1VQM |
|
Cd |
Cadmium |
91323 |
9201 |
|
M14512 |
5.83 |
O |
84797 |
33 |
U |
SER33 |
| 1VQM |
|
Cd |
Cadmium |
91323 |
9201 |
|
M14512 |
4.489 |
OG |
84799 |
33 |
U |
SER33 |
| 1VQM |
|
Cd |
Cadmium |
91323 |
9201 |
|
M14512 |
5.375 |
N |
84815 |
36 |
U |
CYS36 |
| 1VQM |
|
Cd |
Cadmium |
91323 |
9201 |
|
M14512 |
2.386 |
SG |
84820 |
36 |
U |
CYS36 |
| 1VQM |
|
Cd |
Cadmium |
91324 |
9202 |
|
M14513 |
5.373 |
N |
89173 |
19 |
1 |
CYS19 |
| 1VQM |
|
Cd |
Cadmium |
91324 |
9202 |
|
M14513 |
5.418 |
O |
89176 |
19 |
1 |
CYS19 |
| 1VQM |
|
Cd |
Cadmium |
91324 |
9202 |
|
M14513 |
2.48 |
SG |
89178 |
19 |
1 |
CYS19 |
| 1VQM |
|
Cd |
Cadmium |
91324 |
9202 |
|
M14513 |
5.63 |
N |
89179 |
20 |
1 |
ARG20 |
| 1VQM |
|
Cd |
Cadmium |
91324 |
9202 |
|
M14513 |
5.071 |
N |
89190 |
21 |
1 |
ARG21 |
| 1VQM |
|
Cd |
Cadmium |
91324 |
9202 |
|
M14513 |
5.83 |
O |
89193 |
21 |
1 |
ARG21 |
| 1VQM |
|
Cd |
Cadmium |
91324 |
9202 |
|
M14513 |
3.716 |
N |
89201 |
22 |
1 |
CYS22 |
| 1VQM |
|
Cd |
Cadmium |
91324 |
9202 |
|
M14513 |
5.736 |
O |
89204 |
22 |
1 |
CYS22 |
| 1VQM |
|
Cd |
Cadmium |
91324 |
9202 |
|
M14513 |
2.332 |
SG |
89206 |
22 |
1 |
CYS22 |
| 1VQM |
|
Cd |
Cadmium |
91324 |
9202 |
|
M14513 |
4.883 |
N |
89207 |
23 |
1 |
GLY23 |
| 1VQM |
|
Cd |
Cadmium |
91324 |
9202 |
|
M14513 |
5.125 |
N |
89211 |
24 |
1 |
GLU24 |
| 1VQM |
|
Cd |
Cadmium |
91324 |
9202 |
|
M14513 |
5.172 |
O |
89214 |
24 |
1 |
GLU24 |
| 1VQM |
|
Cd |
Cadmium |
91324 |
9202 |
|
M14513 |
5.904 |
O |
89232 |
26 |
1 |
SER26 |
| 1VQM |
|
Cd |
Cadmium |
91324 |
9202 |
|
M14513 |
5.675 |
N |
89235 |
27 |
1 |
TYR27 |
| 1VQM |
|
Cd |
Cadmium |
91324 |
9202 |
|
M14513 |
5.594 |
N |
89298 |
34 |
1 |
CYS34 |
| 1VQM |
|
Cd |
Cadmium |
91324 |
9202 |
|
M14513 |
5.548 |
O |
89301 |
34 |
1 |
CYS34 |
| 1VQM |
|
Cd |
Cadmium |
91324 |
9202 |
|
M14513 |
2.414 |
SG |
89303 |
34 |
1 |
CYS34 |
| 1VQM |
|
Cd |
Cadmium |
91324 |
9202 |
|
M14513 |
5.798 |
N |
89304 |
35 |
1 |
SER35 |
| 1VQM |
|
Cd |
Cadmium |
91324 |
9202 |
|
M14513 |
5.175 |
N |
89310 |
36 |
1 |
SER36 |
| 1VQM |
|
Cd |
Cadmium |
91324 |
9202 |
|
M14513 |
5.809 |
O |
89313 |
36 |
1 |
SER36 |
| 1VQM |
|
Cd |
Cadmium |
91324 |
9202 |
|
M14513 |
5.368 |
OG |
89315 |
36 |
1 |
SER36 |
| 1VQM |
|
Cd |
Cadmium |
91324 |
9202 |
|
M14513 |
3.708 |
N |
89316 |
37 |
1 |
CYS37 |
| 1VQM |
|
Cd |
Cadmium |
91324 |
9202 |
|
M14513 |
5.42 |
O |
89319 |
37 |
1 |
CYS37 |
| 1VQM |
|
Cd |
Cadmium |
91324 |
9202 |
|
M14513 |
2.401 |
SG |
89321 |
37 |
1 |
CYS37 |
| 1VQM |
|
Cd |
Cadmium |
91324 |
9202 |
|
M14513 |
4.851 |
N |
89322 |
38 |
1 |
GLY38 |
| 1VQM |
|
Cd |
Cadmium |
91324 |
9202 |
|
M14513 |
4.808 |
N |
89326 |
39 |
1 |
PHE39 |
| 1VQM |
|
Cd |
Cadmium |
91325 |
9203 |
|
M14514 |
5.931 |
N1 |
33482 |
1604 |
N/A |
G1604 |
| 1VQM |
|
Cd |
Cadmium |
91325 |
9203 |
|
M14514 |
5.878 |
N2 |
33484 |
1604 |
N/A |
G1604 |
| 1VQM |
|
Cd |
Cadmium |
91325 |
9203 |
|
M14514 |
5.64 |
N |
88705 |
39 |
Z |
CYS39 |
| 1VQM |
|
Cd |
Cadmium |
91325 |
9203 |
|
M14514 |
5.246 |
O |
88708 |
39 |
Z |
CYS39 |
| 1VQM |
|
Cd |
Cadmium |
91325 |
9203 |
|
M14514 |
2.463 |
SG |
88710 |
39 |
Z |
CYS39 |
| 1VQM |
|
Cd |
Cadmium |
91325 |
9203 |
|
M14514 |
5.637 |
N |
88711 |
40 |
Z |
PRO40 |
| 1VQM |
|
Cd |
Cadmium |
91325 |
9203 |
|
M14514 |
4.815 |
N |
88718 |
41 |
Z |
ASN41 |
| 1VQM |
|
Cd |
Cadmium |
91325 |
9203 |
|
M14514 |
4.182 |
O |
88721 |
41 |
Z |
ASN41 |
| 1VQM |
|
Cd |
Cadmium |
91325 |
9203 |
|
M14514 |
5.972 |
OD1 |
88724 |
41 |
Z |
ASN41 |
| 1VQM |
|
Cd |
Cadmium |
91325 |
9203 |
|
M14514 |
4.238 |
ND2 |
88725 |
41 |
Z |
ASN41 |
| 1VQM |
|
Cd |
Cadmium |
91325 |
9203 |
|
M14514 |
4.39 |
N |
88726 |
42 |
Z |
CYS42 |
| 1VQM |
|
Cd |
Cadmium |
91325 |
9203 |
|
M14514 |
2.728 |
SG |
88731 |
42 |
Z |
CYS42 |
| 1VQM |
|
Cd |
Cadmium |
91325 |
9203 |
|
M14514 |
5.41 |
N |
88732 |
43 |
Z |
GLY43 |
| 1VQM |
|
Cd |
Cadmium |
91325 |
9203 |
|
M14514 |
5.284 |
N |
88736 |
44 |
Z |
GLU44 |
| 1VQM |
|
Cd |
Cadmium |
91325 |
9203 |
|
M14514 |
5.781 |
O |
88739 |
44 |
Z |
GLU44 |
| 1VQM |
|
Cd |
Cadmium |
91325 |
9203 |
|
M14514 |
5.995 |
N |
88845 |
57 |
Z |
CYS57 |
| 1VQM |
|
Cd |
Cadmium |
91325 |
9203 |
|
M14514 |
5.206 |
O |
88848 |
57 |
Z |
CYS57 |
| 1VQM |
|
Cd |
Cadmium |
91325 |
9203 |
|
M14514 |
2.642 |
SG |
88850 |
57 |
Z |
CYS57 |
| 1VQM |
|
Cd |
Cadmium |
91325 |
9203 |
|
M14514 |
5.302 |
N |
88857 |
59 |
Z |
TYR59 |
| 1VQM |
|
Cd |
Cadmium |
91325 |
9203 |
|
M14514 |
5.961 |
O |
88860 |
59 |
Z |
TYR59 |
| 1VQM |
|
Cd |
Cadmium |
91325 |
9203 |
|
M14514 |
3.883 |
N |
88869 |
60 |
Z |
CYS60 |
| 1VQM |
|
Cd |
Cadmium |
91325 |
9203 |
|
M14514 |
5.761 |
O |
88872 |
60 |
Z |
CYS60 |
| 1VQM |
|
Cd |
Cadmium |
91325 |
9203 |
|
M14514 |
2.431 |
SG |
88874 |
60 |
Z |
CYS60 |
| 1VQM |
|
Cd |
Cadmium |
91325 |
9203 |
|
M14514 |
5.629 |
N |
88875 |
61 |
Z |
ASP61 |
| 1VQM |
|
Cd |
Cadmium |
91325 |
9203 |
|
M14514 |
5.695 |
N |
88883 |
62 |
Z |
TYR62 |
| 1VQM |
|
Cd |
Cadmium |
91326 |
9204 |
|
M14515 |
5.937 |
N |
89968 |
11 |
3 |
CYS11 |
| 1VQM |
|
Cd |
Cadmium |
91326 |
9204 |
|
M14515 |
5.232 |
O |
89971 |
11 |
3 |
CYS11 |
| 1VQM |
|
Cd |
Cadmium |
91326 |
9204 |
|
M14515 |
2.418 |
SG |
89973 |
11 |
3 |
CYS11 |
| 1VQM |
|
Cd |
Cadmium |
91326 |
9204 |
|
M14515 |
5.141 |
N |
89981 |
13 |
3 |
HIS13 |
| 1VQM |
|
Cd |
Cadmium |
91326 |
9204 |
|
M14515 |
5.697 |
O |
89984 |
13 |
3 |
HIS13 |
| 1VQM |
|
Cd |
Cadmium |
91326 |
9204 |
|
M14515 |
3.564 |
N |
89991 |
14 |
3 |
CYS14 |
| 1VQM |
|
Cd |
Cadmium |
91326 |
9204 |
|
M14515 |
2.618 |
SG |
89996 |
14 |
3 |
CYS14 |
| 1VQM |
|
Cd |
Cadmium |
91326 |
9204 |
|
M14515 |
5.534 |
N |
89997 |
15 |
3 |
ASN15 |
| 1VQM |
|
Cd |
Cadmium |
91326 |
9204 |
|
M14515 |
5.74 |
O |
90008 |
16 |
3 |
GLU16 |
| 1VQM |
|
Cd |
Cadmium |
91326 |
9204 |
|
M14515 |
4.062 |
OE1 |
90031 |
18 |
3 |
GLN18 |
| 1VQM |
|
Cd |
Cadmium |
91326 |
9204 |
|
M14515 |
5.123 |
NE2 |
90032 |
18 |
3 |
GLN18 |
| 1VQM |
|
Cd |
Cadmium |
91326 |
9204 |
|
M14515 |
5.538 |
NE2 |
90051 |
20 |
3 |
HIS20 |
| 1VQM |
|
Cd |
Cadmium |
91326 |
9204 |
|
M14515 |
5.469 |
N |
90454 |
71 |
3 |
CYS71 |
| 1VQM |
|
Cd |
Cadmium |
91326 |
9204 |
|
M14515 |
5.408 |
O |
90457 |
71 |
3 |
CYS71 |
| 1VQM |
|
Cd |
Cadmium |
91326 |
9204 |
|
M14515 |
2.256 |
SG |
90459 |
71 |
3 |
CYS71 |
| 1VQM |
|
Cd |
Cadmium |
91326 |
9204 |
|
M14515 |
5.684 |
N |
90460 |
72 |
3 |
GLY72 |
| 1VQM |
|
Cd |
Cadmium |
91326 |
9204 |
|
M14515 |
5.206 |
N |
90464 |
73 |
3 |
GLU73 |
| 1VQM |
|
Cd |
Cadmium |
91326 |
9204 |
|
M14515 |
5.969 |
O |
90467 |
73 |
3 |
GLU73 |
| 1VQM |
|
Cd |
Cadmium |
91326 |
9204 |
|
M14515 |
3.977 |
N |
90473 |
74 |
3 |
CYS74 |
| 1VQM |
|
Cd |
Cadmium |
91326 |
9204 |
|
M14515 |
5.746 |
O |
90476 |
74 |
3 |
CYS74 |
| 1VQM |
|
Cd |
Cadmium |
91326 |
9204 |
|
M14515 |
2.467 |
SG |
90478 |
74 |
3 |
CYS74 |
| 1VQM |
|
Cd |
Cadmium |
91326 |
9204 |
|
M14515 |
5.17 |
N |
90479 |
75 |
3 |
GLY75 |
| 1VQM |
|
Cd |
Cadmium |
91326 |
9204 |
|
M14515 |
5.448 |
N |
90483 |
76 |
3 |
LYS76 |
| 1VQM |
|
Cd |
Cadmium |
91326 |
9204 |
|
M14515 |
5.337 |
O |
90486 |
76 |
3 |
LYS76 |
| 1VQM |
|
Cd |
Cadmium |
91327 |
9205 |
|
M14516 |
5.718 |
O2P |
13818 |
656 |
0 |
G656 |
| 1VQM |
|
Cd |
Cadmium |
91327 |
9205 |
|
M14516 |
5.143 |
O |
79359 |
37 |
O |
ARG37 |
| 1VQM |
|
Cd |
Cadmium |
91327 |
9205 |
|
M14516 |
5.068 |
NE |
79363 |
37 |
O |
ARG37 |
| 1VQM |
|
Cd |
Cadmium |
91327 |
9205 |
|
M14516 |
4.752 |
NH1 |
79365 |
37 |
O |
ARG37 |
| 1VQM |
|
Cd |
Cadmium |
91327 |
9205 |
|
M14516 |
5.186 |
NH2 |
79366 |
37 |
O |
ARG37 |
| 1VQM |
|
Cd |
Cadmium |
91327 |
9205 |
|
M14516 |
2.641 |
ND1 |
79391 |
40 |
O |
HIS40 |
| 1VQM |
|
Cd |
Cadmium |
91327 |
9205 |
|
M14516 |
4.657 |
NE2 |
79394 |
40 |
O |
HIS40 |