R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 1869 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|2342724|gb|AAB67622.1| (AC002341) unknown protein [Arabidopsis thaliana]
Length = 487
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 487
0 150 300 450
Plus Strand HSPs:
Score = 165 (58.1 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 34/50 (68%), Positives = 39/50 (78%), Frame = +1
Query: 4 SKKGRGAGGLQNQLVNRALEGLS--GGGRGGMRGRGRVWGGRGRGRGGYH 147
SKKGRG+G +QNQLVN+A EG+S G GRGG RG GR GGRGRG+G H
Sbjct: 437 SKKGRGSGTMQNQLVNKAFEGISSYGAGRGGNRGWGRRGGGRGRGQGRGH 486
>gi|6912486 ref|NP_036453.1| U6 snRNA-associated Sm-like protein
>gi|5262858|emb|CAB45867.1| (AJ238096) Lsm4 protein [Homo sapiens]
>gi|5919149|gb|AAD56228.1|AF182290_1 (AF182290) U6 snRNA-associated
Sm-like protein LSm4 [Homo sapiens]
>gi|6563244|gb|AAF17216.1|AF117235_1 (AF117235) glycine-rich
protein [Homo sapiens]
Length = 139
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | 139
0 50 100
Plus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.00040, P = 0.00040
Identities = 24/43 (55%), Positives = 26/43 (60%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGG-RGRGRG 138
KGRG GGLQ Q + G+ G GRG GRGR GG G GRG
Sbjct: 86 KGRGRGGLQQQKQQKG-RGMGGAGRGVFGGRGR--GGIPGTGRG 126
Score = 80 (28.2 bits), Expect = 0.020, P = 0.020
Identities = 22/44 (50%), Positives = 25/44 (56%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGG 141
KGRG GGLQ Q + G+ G GRG V+GGRGRG G
Sbjct: 86 KGRGRGGLQQQKQQKG-RGMGGAGRG-------VFGGRGRG--G 119
Score = 72 (25.3 bits), Expect = 0.17, P = 0.16
Identities = 20/40 (50%), Positives = 23/40 (57%), Frame = +1
Query: 10 KGRGAGGLQNQLVNR------ALEGLSGG-GRGGMRGRGR 108
KGRG GGLQ Q + A G+ GG GRGG+ G GR
Sbjct: 86 KGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGR 125
>gi|7488999|pir||S14981 extensin class I (clone w1-8 L) - tomato (fragment)
Length = 199
Frame -1 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | 199
0 50 100 150
Minus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.00082, P = 0.00082
Identities = 21/45 (46%), Positives = 24/45 (53%), Frame = -1
Query: 143 YPPLPLPRPPQTRPLPLIPPLPPPDNPS-SALLTS*FCKPPAPRP 12
YPP P PP RP P PP PP +P+ S L C PP+P P
Sbjct: 110 YPPPGYPPPPPLRPPPGYPPPPPCSDPAPSPLPYPLACPPPSPSP 154
Score = 72 (25.3 bits), Expect = 0.43, P = 0.35
Identities = 23/49 (46%), Positives = 25/49 (51%), Frame = -1
Query: 161 QQSYR*YPPLPLPRPPQT-RPLP---LIPPLPPPDNPSSALLTS*FCKPPAPR 15
+Q +R PP P PRPP RP P L PP PPP P PP PR
Sbjct: 60 EQHFRPPPPRP-PRPPPPPRPPPPEYLPPPRPPPPPPGYL--------PPPPR 103
Score = 71 (25.0 bits), Expect = 0.55, P = 0.42
Identities = 18/43 (41%), Positives = 18/43 (41%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P PP P P PP PPP P C PAP P
Sbjct: 99 PPPPRYPPPPGYPPPGYPP-PPPLRPPPGYPPPPPCSDPAPSP 140
Score = 61 (21.5 bits), Expect = 7.2, P = 1.0
Identities = 17/43 (39%), Positives = 18/43 (41%), Frame = -1
Query: 140 PPLPLPRP-PQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P P P PL P P P P S PP+P P
Sbjct: 129 PPPPCSDPAPSPLPYPLACPPPSPSPPPPYYYKS----PPSPSP 168
>gi|544283|sp|P35549|FBRL_LEIMA FIBRILLARIN >gi|425152|gb|AAA67420.1| (L26252)
fibrillarin [Leishmania major]
Length = 297
Frame 1 hits (HSPs): _________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 297
0 50 100 150 200 250
__________________
Annotated Domains:
BLOCKS BL00566A: Fibrillarin proteins. 65..100
BLOCKS BL00566B: Fibrillarin proteins. 110..143
BLOCKS BL00566C: Fibrillarin proteins. 146..197
BLOCKS BL00566D: Fibrillarin proteins. 198..248
DOMO DM04567: FIBRILLARIN 55..296
Entrez Domain: GLY/DMA-RICH. 1..56
Entrez Domain: RNA-BINDING (RNP2) (POTENTIAL). 162..169
PFAM Fibrillarin: Fibrillarin 57..291
PRINTS FIBRILLARIN1: Fibrillarin motif I - 2 80..99
PRINTS FIBRILLARIN2: Fibrillarin motif II - 2 110..129
PRINTS FIBRILLARIN3: Fibrillarin motif III - 2 137..158
PRINTS FIBRILLARIN4: Fibrillarin motif IV - 2 162..179
PRINTS FIBRILLARIN5: Fibrillarin motif V - 2 186..215
PRINTS FIBRILLARIN6: Fibrillarin motif VI - 2 216..245
PRINTS FIBRILLARIN7: Fibrillarin motif VII - 2 268..289
PRODOM PD004637: FBRL(9) FLPA(6) Q9ZSE3(1) 58..289
PROSITE FIBRILLARIN: Fibrillarin signature. 162..176
__________________
Plus Strand HSPs:
Score = 99 (34.8 bits), Expect = 0.00094, P = 0.00094
Identities = 25/43 (58%), Positives = 25/43 (58%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGG 141
GRG GG R G GGGRGG RG GR GGRG GRGG
Sbjct: 6 GRGGGGRGGSRGGRGGFG-RGGGRGGGRGGGR-GGGRGGGRGG 46
Score = 87 (30.6 bits), Expect = 0.019, P = 0.019
Identities = 25/46 (54%), Positives = 26/46 (56%), Frame = +1
Query: 4 SKKGRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGG 141
S+ GRG G R G GGGRGG RG GR GGRG GRGG
Sbjct: 15 SRGGRGGFGRGG---GRG--GGRGGGRGGGRGGGR-GGGRGGGRGG 54
Score = 87 (30.6 bits), Expect = 0.019, P = 0.019
Identities = 25/49 (51%), Positives = 25/49 (51%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGG---GRGGMRGRGRVWG---GRGRGRGG 141
GRG GG R G GG GRGG RG GR G GRG GRGG
Sbjct: 6 GRGGGGRGGSRGGRGGFGRGGGRGGGRGGGRGGGRGGGRGGGRGGGRGG 54
Score = 81 (28.5 bits), Expect = 0.088, P = 0.084
Identities = 18/26 (69%), Positives = 18/26 (69%), Frame = +1
Query: 64 GLSGGGRGGMRGRGRVWGGRGRGRGG 141
G GGGRGG RG GR GRG GRGG
Sbjct: 6 GRGGGGRGGSRG-GRGGFGRGGGRGG 30
>gi|213591|gb|AAA49470.1| (M62415) HPLC6 [Pseudopleuronectes americanus]
Length = 83
Frame -1 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | | | 83
0 20 40 60 80
Minus Strand HSPs:
Score = 92 (32.4 bits), Expect = 0.0011, P = 0.0011
Identities = 24/40 (60%), Positives = 25/40 (62%), Frame = -1
Query: 131 PLPRPPQTRPL--PLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PLP+PPQT PL PL PPLPPP P L S PP P P
Sbjct: 36 PLPQPPQTPPLTPPLQPPLPPP-TPKP-LPNS---LPPTPPP 72
Score = 73 (25.7 bits), Expect = 0.11, P = 0.10
Identities = 15/25 (60%), Positives = 17/25 (68%), Frame = -1
Query: 140 PPLPLPRPPQT-RPLP-LIPPLPPP 72
PPL P PP T +PLP +PP PPP
Sbjct: 48 PPLQPPLPPPTPKPLPNSLPPTPPP 72
Score = 73 (25.7 bits), Expect = 0.11, P = 0.10
Identities = 17/42 (40%), Positives = 21/42 (50%), Frame = -1
Query: 137 PLPLPRPPQTRPLPLIPPLP-PPDNPSSALLTS*FCKPPAPRP 12
P P P+PPQ + +PPLP PP P PP P+P
Sbjct: 23 PTPQPKPPQQQ----LPPLPQPPQTPPLTPPLQPPLPPPTPKP 61
Score = 59 (20.8 bits), Expect = 3.4, P = 0.97
Identities = 11/24 (45%), Positives = 12/24 (50%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPD 69
PP P P P P P P PPP+
Sbjct: 56 PPTPKPLPNSLPPTPPPPQQPPPE 79
>gi|6691200|gb|AAF24538.1|AC007508_1 (AC007508) F1K23.1 [Arabidopsis thaliana]
Length = 401
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | 401
0 150 300
Plus Strand HSPs:
Score = 99 (34.8 bits), Expect = 0.0015, P = 0.0015
Identities = 26/46 (56%), Positives = 30/46 (65%), Frame = +1
Query: 4 SKKGRGAGGLQNQLVNRALEGLS-GGGRGGMRGRGRVWG-GRGRGRGG 141
+KK R Q Q+VN+ EG+S GGGRG RGRGR G GR G GG
Sbjct: 346 AKKARVQN--QQQVVNKRSEGISHGGGRGSHRGRGRGQGQGRHSGGGG 391
Score = 99 (34.8 bits), Expect = 0.0015, P = 0.0015
Identities = 28/55 (50%), Positives = 33/55 (60%), Frame = +1
Query: 4 SKKGRGAGGLQNQLVNRALEGLS-GGGRGGMRGRGRVWG---------GRGRGRGGY 144
+KK R Q Q+VN+ EG+S GGGRG RGRGR G GRGRGR G+
Sbjct: 346 AKKARVQN--QQQVVNKRSEGISHGGGRGSHRGRGRGQGQGRHSGGGGGRGRGRRGF 400
>gi|2462823|gb|AAB72158.1| (AF000657) unknown protein [Arabidopsis thaliana]
>gi|2829907|gb|AAC00615.1| (AC002311) Unknown protein [Arabidopsis
thaliana]
Length = 144
Frame -1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | 144
0 50 100
Minus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.0022, P = 0.0022
Identities = 20/44 (45%), Positives = 22/44 (50%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRPF 9
PP P P PP P P +PP PPP SS +C PP P F
Sbjct: 64 PPPPSPPPPACPPPPALPP-PPPKKVSS------YCPPPPPANF 100
Score = 81 (28.5 bits), Expect = 0.016, P = 0.016
Identities = 20/44 (45%), Positives = 21/44 (47%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLP--PPDNPSSALLTS*FCKPPAPRPF 9
PP P P PP P P PP P PP P S +C PP P F
Sbjct: 59 PPPPSPPPPSPPP-PACPPPPALPPPPPKKV---SSYCPPPPPANF 100
>gi|100215|pir||S14970 extensin class I (clone w17-1) - tomato
>gi|1345531|emb|CAA39212.1| (X55681) extensin (class I)
[Lycopersicon esculentum]
Length = 132
Frame -1 hits (HSPs): __________________________________________________
Annotated Domains: ___________________________________________
__________________________________________________
Database sequence: | | | | 132
0 50 100
__________________
Annotated Domains:
DOMO DM00215: PROLINE-RICHPROTEIN3 2..70
DOMO DM00215: PROLINE-RICHPROTEIN3 72..113
__________________
Minus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.0022, P = 0.0022
Identities = 21/46 (45%), Positives = 24/46 (52%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIP-PLPPPDNPSSALLTS*FCKPPAPRPFFE 3
PP P P PP P P P PPP +PS T + PP P PF+E
Sbjct: 65 PPDPSPPPPYYYKSPPPPSPSPPPPSPSPPPPT--YSSPPPPPPFYE 109
Score = 70 (24.6 bits), Expect = 0.25, P = 0.22
Identities = 19/52 (36%), Positives = 25/52 (48%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLI---PPLPPP--DN-PSSALLTS*FCKPPAPR-PFF 6
PP P P PP P P PP PPP +N P ++ + PP P P++
Sbjct: 81 PPSPSPPPPSPSPPPPTYSSPPPPPPFYENIPLPPVIGVSYASPPPPVIPYY 132
Score = 57 (20.1 bits), Expect = 8.9, P = 1.0
Identities = 17/43 (39%), Positives = 18/43 (41%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP P PP P P P S PP+P P
Sbjct: 1 PPSPSPPPPYYYKSP--PP-PSPSPPPPYYYKS--PPPPSPSP 38
Score = 57 (20.1 bits), Expect = 8.9, P = 1.0
Identities = 17/43 (39%), Positives = 19/43 (44%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP P P PPP +PS + PP P P
Sbjct: 15 PPPPSPSPP---P-PYYYKSPPPPSPSPPPPYY-YKSPPPPSP 52
Score = 57 (20.1 bits), Expect = 8.9, P = 1.0
Identities = 17/43 (39%), Positives = 19/43 (44%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP P P PPP +PS + PP P P
Sbjct: 47 PPPPSPSPP---P-PYYYKSPPPPDPSPPPPYY-YKSPPPPSP 84
>gi|1477478|gb|AAC47760.1| (U39883) Y-box binding protein [Schistosoma mansoni]
>gi|1477484|gb|AAC47761.1| (U42205) Y-box binding protein homolog
[Schistosoma mansoni]
Length = 217
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | 217
0 50 100 150 200
Plus Strand HSPs:
Score = 93 (32.7 bits), Expect = 0.0023, P = 0.0023
Identities = 24/45 (53%), Positives = 30/45 (66%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRALEGLSGGGRG-GMRGRGRVWGGRG-RGRGGY 144
+GRG GG +++ A E + GGRG G RGRGR GRG RG GG+
Sbjct: 147 RGRGRGG--SEMYGGAYEFMDRGGRGRGFRGRGRP-RGRGFRGSGGF 190
Score = 83 (29.2 bits), Expect = 0.030, P = 0.030
Identities = 25/51 (49%), Positives = 30/51 (58%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRALEGLSGGGRG-GMRGRGRVWG----GRG----RGRGG 141
+GRG GG +++ A E + GGRG G RGRGR G G G RGRGG
Sbjct: 147 RGRGRGG--SEMYGGAYEFMDRGGRGRGFRGRGRPRGRGFRGSGGFESRGRGG 197
Score = 63 (22.2 bits), Expect = 5.0, P = 0.99
Identities = 24/58 (41%), Positives = 29/58 (50%), Frame = +1
Query: 10 KGRGAGGLQN---QLVNRALEGLSGGGRGGMRGRG-RVWGG---RGRG--RGG---YH 147
+GRG + + ++R G GRG RGRG R GG RGRG RGG YH
Sbjct: 149 RGRGGSEMYGGAYEFMDRGGRGRGFRGRGRPRGRGFRGSGGFESRGRGGPRGGRDNYH 206
>gi|7488919|pir||T14302 glycine-rich cell wall protein - carrot (fragment)
>gi|1276958|gb|AAB01093.1| (U47088) glycine-rich cell wall protein
[Daucus carota]
Length = 87
Frame 3 hits (HSPs): __
Frame 1 hits (HSPs): _____________________________________________
__________________________________________________
Database sequence: | | | | | | 87
0 20 40 60 80
Plus Strand HSPs:
Score = 69 (24.3 bits), Expect = 0.29, P = 0.25
Identities = 19/43 (44%), Positives = 20/43 (46%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGG 141
G GAGGL G GGG GG+ G V GG G GG
Sbjct: 39 GGGAGGLSGLGGLXGGAGGLGGGAGGLGGLAGVGGGVAGGAGG 81
Score = 68 (23.9 bits), Expect = 0.0024, Sum P(2) = 0.0024
Identities = 19/41 (46%), Positives = 22/41 (53%), Frame = +1
Query: 19 GAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGG 141
G GG+ L GL GGG GG+ G G + GG G G GG
Sbjct: 22 GIGGIGGVGGAGGLGGL-GGGAGGLSGLGGLXGGAG-GLGG 60
Score = 62 (21.8 bits), Expect = 1.6, P = 0.80
Identities = 24/46 (52%), Positives = 25/46 (54%), Frame = +1
Query: 13 GRGAGGLQNQ--LVNRALEGLSGG--GRGGMRG-RGRVWGGRGRGRGG 141
G GAGGL L A GL GG G GG+ G G V GG G G GG
Sbjct: 39 GGGAGGLSGLGGLXGGA-GGLGGGAGGLGGLAGVGGGVAGGAG-GVGG 84
Score = 55 (19.4 bits), Expect = 0.050, Sum P(2) = 0.049
Identities = 17/41 (41%), Positives = 21/41 (51%), Frame = +1
Query: 19 GAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGG 141
G GG+ L G+ GG GG+ G G + GG G G GG
Sbjct: 7 GVGGVGGVAGVVPLGGI--GGIGGVGGAGGL-GGLGGGAGG 44
Score = 31 (10.9 bits), Expect = 0.0024, Sum P(2) = 0.0024
Identities = 3/3 (100%), Positives = 3/3 (100%), Frame = +3
Query: 21 CWW 29
CWW
Sbjct: 2 CWW 4
>gi|7161181|emb|CAB76563.1| (AJ276003) GAR1 protein [Homo sapiens]
Length = 217
Frame 1 hits (HSPs): ____________ _____________
__________________________________________________
Database sequence: | | | | | | 217
0 50 100 150 200
Plus Strand HSPs:
Score = 92 (32.4 bits), Expect = 0.0030, P = 0.0029
Identities = 21/48 (43%), Positives = 26/48 (54%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRALEGLSGGGRGG-MRGRGRVWGGRGRGRGGYHR 150
+G G GG + G GGG GG RG GR GRG GRGG+++
Sbjct: 13 RGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNK 60
Score = 86 (30.3 bits), Expect = 0.014, P = 0.014
Identities = 19/26 (73%), Positives = 19/26 (73%), Frame = +1
Query: 73 GGGRGGMRGRGRVWGGRGRGRGGYHR 150
GGGRGG RG GR GGRG GRGG R
Sbjct: 170 GGGRGG-RGGGRGGGGRGGGRGGGFR 194
Score = 78 (27.5 bits), Expect = 0.11, P = 0.10
Identities = 17/27 (62%), Positives = 18/27 (66%), Frame = +1
Query: 64 GLSGGGRGGMRGRGRVWGGRGRGRGGY 144
G GGGRGG RG G GGRG G GG+
Sbjct: 179 GRGGGGRGGGRGGG-FRGGRGGGGGGF 204
Score = 72 (25.3 bits), Expect = 0.50, P = 0.40
Identities = 20/40 (50%), Positives = 20/40 (50%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRG 132
GRG GG G GGG GG RG GR G RGRG
Sbjct: 179 GRGGGGRGGGR-GGGFRGGRGGGGGGFRG-GRGGGFRGRG 216
Score = 69 (24.3 bits), Expect = 1.1, P = 0.66
Identities = 16/23 (69%), Positives = 16/23 (69%), Frame = +1
Query: 76 GGRGGMRGRGRVWGGRGRG-RGG 141
GGRGG RG G GGRG G RGG
Sbjct: 174 GGRGGGRGGGGRGGGRGGGFRGG 196
Score = 67 (23.6 bits), Expect = 1.8, P = 0.84
Identities = 18/26 (69%), Positives = 18/26 (69%), Frame = +1
Query: 64 GLSGGGRGGM-RGRGRVWGGRGRGRGG 141
G GGGRGG RG GR G RG GRGG
Sbjct: 174 GGRGGGRGGGGRGGGRGGGFRG-GRGG 199
Score = 64 (22.5 bits), Expect = 3.9, P = 0.98
Identities = 23/47 (48%), Positives = 24/47 (51%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRG-RG-RGGYHR 150
+G G GG R G GG GG RG GR GG G RG RGG R
Sbjct: 169 RGGGRGGRGG---GRGGGGRGGGRGGGFRG-GRGGGGGGFRGGRGGGFR 213
Score = 61 (21.5 bits), Expect = 8.3, P = 1.0
Identities = 14/22 (63%), Positives = 15/22 (68%), Frame = +1
Query: 76 GGRGGMRGRGRVWGGRGRGRGG 141
G +G RG GR GGRG GRGG
Sbjct: 163 GEKGPPRGGGR--GGRGGGRGG 182
>gi|7489241|pir||T07176 extensin homolog - potato (fragment)
>gi|2894120|emb|CAA06000.1| (AJ003220) extensin-like protein
[Solanum tuberosum]
Length = 221
Frame -1 hits (HSPs): ____________ __
Frame -3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 221
0 50 100 150 200
Minus Strand HSPs:
Score = 76 (26.8 bits), Expect = 0.0033, Sum P(2) = 0.0033
Identities = 18/42 (42%), Positives = 19/42 (45%), Frame = -1
Query: 149 R*YP-PLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKP 27
R YP P P PRP P P PP PPP P + C P
Sbjct: 40 RPYPCPPPKPRPSPPPPPPRSPPPPPPSPPPPPPTPATTCSP 81
Score = 70 (24.6 bits), Expect = 0.87, P = 0.58
Identities = 20/46 (43%), Positives = 20/46 (43%), Frame = -1
Query: 149 R*YP-PLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
R YP P P PRP P P PP PPP P PP P P
Sbjct: 40 RPYPCPPPKPRPSPPPPPPRSPPPPPPSPP-----------PPPPTP 75
Score = 64 (22.5 bits), Expect = 4.0, P = 0.98
Identities = 18/42 (42%), Positives = 20/42 (47%), Frame = -1
Query: 137 PLPLPRP---PQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
P P PRP P +P P PP PPP +P PP P P
Sbjct: 35 PFPFPRPYPCPPPKPRPSPPP-PPPRSPP----------PPPPSP 68
Score = 54 (19.0 bits), Expect = 0.84, Sum P(2) = 0.57
Identities = 13/43 (30%), Positives = 17/43 (39%), Frame = -3
Query: 150 PMIPSSSSSTTTPDPASAPHTPSPTTRQSFQRSIDKLILQTTS 22
P P S P P P TP+ T + + K + TTS
Sbjct: 54 PPPPPRSPPPPPPSPPPPPPTPATTCSPGDKAKVKKCMFNTTS 96
Score = 32 (11.3 bits), Expect = 0.0033, Sum P(2) = 0.0033
Identities = 4/8 (50%), Positives = 6/8 (75%), Frame = -1
Query: 35 CKPPAPRP 12
C+ P P+P
Sbjct: 139 CRSPPPKP 146
>gi|4263745|gb|AAD15418.1| (AC004912) similar to CR16, SH3 domain binding
protein; similar to 2205340A (PID:g1587070) [Homo sapiens]
Length = 453
Frame -1 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | || 453
0 150 300 450
Minus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.0039, P = 0.0039
Identities = 23/53 (43%), Positives = 29/53 (54%), Frame = -1
Query: 176 STSHLQQSYR*YPPLP-LPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAP 18
+TS + R PP P +P PP P P PPLPPP PSS+ + + PP P
Sbjct: 124 NTSEAHGAARTAPPRPNVPAPPPPTPPPPPPPLPPP-LPSSSPIKTPLVSPPGP 176
Score = 68 (23.9 bits), Expect = 4.0, P = 0.98
Identities = 15/30 (50%), Positives = 17/30 (56%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSAL 51
PP+P PP P P PP PPP P+S L
Sbjct: 187 PPVPCAPPP---PPPPPPPTPPPLPPASVL 213
Score = 66 (23.2 bits), Expect = 6.6, P = 1.0
Identities = 20/45 (44%), Positives = 24/45 (53%), Frame = -1
Query: 140 PPL-PLPRPPQTRPLPLIPPLPPPD---NPSSALLTS*FCKPPAPRP 12
P L PL PP PLPL+PP P P+S + +PPAP P
Sbjct: 220 PQLAPLHLPPIPPPLPLLPPCGYPGLKAEPASPAQDA--QEPPAPPP 264
Score = 65 (22.9 bits), Expect = 8.5, P = 1.0
Identities = 18/47 (38%), Positives = 22/47 (46%), Frame = -1
Query: 140 PPLPLPRP-PQTRPL--PLI-PPLPPPDNPSSALLTS*FCKPPAPRP 12
PP PLP P P + P+ PL+ PP P + C PP P P
Sbjct: 152 PPPPLPPPLPSSSPIKTPLVSPPGPLTKGNLPVVAPPVPCAPPPPPP 198
>gi|5734622|dbj|BAA83353.1| (AP000391) Similar to Hypothetical 81.7 KD protein
in MOL1-NAT2 intergenic region &SCCVIIRA_2 (P48234) [Oryza sativa]
Length = 251
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | || 251
0 50 100 150 200 250
Plus Strand HSPs:
Score = 92 (32.4 bits), Expect = 0.0040, P = 0.0040
Identities = 23/43 (53%), Positives = 24/43 (55%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRG 138
+GRG GG R G GGGRGG G G GGRGRGRG
Sbjct: 209 RGRGGGG------GRGRGGGGGGGRGGGGGGGGGRGGRGRGRG 245
Score = 90 (31.7 bits), Expect = 0.0067, P = 0.0067
Identities = 25/43 (58%), Positives = 26/43 (60%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRG 138
+GRG GG R G GGGRGG RGRGR GRGRGRG
Sbjct: 217 RGRGGGGGGG----RGGGGGGGGGRGG-RGRGR---GRGRGRG 251
Score = 82 (28.9 bits), Expect = 0.051, P = 0.050
Identities = 22/43 (51%), Positives = 25/43 (58%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRAL-EGLSGGGRGGMRGRGRVWGGRGRGRG 138
+GRG GG + + G GGG GG GRGR GRGRGRG
Sbjct: 209 RGRGGGGGRGRGGGGGGGRGGGGGGGGGRGGRGR---GRGRGRG 249
Score = 74 (26.0 bits), Expect = 0.39, P = 0.32
Identities = 18/25 (72%), Positives = 18/25 (72%), Frame = +1
Query: 67 LSGGGRGGMRGRGRVWGGRGRGRGG 141
L GG RG RGRGR GG GRGRGG
Sbjct: 200 LFGGSRG--RGRGR-GGGGGRGRGG 221
Score = 70 (24.6 bits), Expect = 1.1, P = 0.66
Identities = 16/23 (69%), Positives = 16/23 (69%), Frame = +1
Query: 73 GGGRGGMRGRGRVWGGRGRGRGG 141
G GRGG GRGR GG G GRGG
Sbjct: 208 GRGRGGGGGRGR-GGGGGGGRGG 229
Score = 67 (23.6 bits), Expect = 2.3, P = 0.90
Identities = 21/47 (44%), Positives = 24/47 (51%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGGYHR 150
+GRG GG + + GGG GG RG G GG G GRGG R
Sbjct: 209 RGRGGGGGRGR----------GGGGGGGRGGG---GGGGGGRGGRGR 242
>gi|3721940|dbj|BAA33761.1| (AB018189) NO27 [Xenopus laevis]
Length = 248
Frame 1 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | | | 248
0 50 100 150 200
Plus Strand HSPs:
Score = 91 (32.0 bits), Expect = 0.0051, P = 0.0051
Identities = 25/51 (49%), Positives = 28/51 (54%), Frame = +1
Query: 16 RGAGGLQNQLVNRALEGLSGGGRGGMRGR-GRV-WGGRG----RGRGGYHR 150
RG GG+ + R + G G GRG MRG GR GGRG RGRGG R
Sbjct: 140 RGRGGVSRMGLRRGMRGRGGPGRGMMRGAMGRGGMGGRGGMGARGRGGMTR 190
Score = 86 (30.3 bits), Expect = 0.018, P = 0.018
Identities = 22/42 (52%), Positives = 25/42 (59%), Frame = +1
Query: 16 RGAGGLQNQLVNRALEGLSGGGRGGMRGR-GRVWGGRGRGRGG 141
RG GG+ + R + G G GRG MRG GR GG G GRGG
Sbjct: 140 RGRGGVSRMGLRRGMRGRGGPGRGMMRGAMGR--GGMG-GRGG 179
Score = 86 (30.3 bits), Expect = 0.018, P = 0.018
Identities = 24/47 (51%), Positives = 30/47 (63%), Frame = +1
Query: 7 KKG-RGAGGLQNQLVNRALEGLSG-GGRGGM--RGRGRVWGGRGRGRG 138
++G RG GG ++ A+ G G GGRGGM RGRG + GRG GRG
Sbjct: 151 RRGMRGRGGPGRGMMRGAM-GRGGMGGRGGMGARGRGGMTRGRGFGRG 197
Score = 83 (29.2 bits), Expect = 0.039, P = 0.038
Identities = 30/68 (44%), Positives = 40/68 (58%), Frame = +1
Query: 7 KKG-RGAGGLQNQLVNRALEGLSG-GGRGGM--RGRG-----RVWG-GRGRGRG-GYHR* 153
++G RG GG ++ A+ G G GGRGGM RGRG R +G GRGRGRG G R
Sbjct: 151 RRGMRGRGGPGRGMMRGAM-GRGGMGGRGGMGARGRGGMTRGRGFGRGRGRGRGRGVTRP 209
Query: 154 LCCRCDVEN 180
+ + ++N
Sbjct: 210 VITKEQLDN 218
Score = 66 (23.2 bits), Expect = 2.9, P = 0.94
Identities = 21/45 (46%), Positives = 24/45 (53%), Frame = +1
Query: 16 RGAG-GLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGGYHR 150
RGAG GL+ V R + GGRG RG + G RGRGG R
Sbjct: 104 RGAGMGLRG--VQRGVMRGGRGGRGMARGSMAMRGQNLRGRGGVSR 147
>gi|178014|gb|AAA51575.1| (M77381) acrosin [Homo sapiens]
Length = 184
Frame -1 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | 184
0 50 100 150
Minus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.0055, P = 0.0054
Identities = 24/54 (44%), Positives = 29/54 (53%), Frame = -1
Query: 173 TSHLQQSYR*YPPLPLP-RPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
++HL ++ PP PLP RPP +P P PP PPP P A S PP P P
Sbjct: 84 SAHLPWYFQ-PPPRPLPPRPPAAQPPP--PPSPPPPPPPPA---SPLPPPPPPPP 132
Score = 76 (26.8 bits), Expect = 0.13, P = 0.12
Identities = 16/28 (57%), Positives = 16/28 (57%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSS 57
P P P PP PLP PP PPP PSS
Sbjct: 111 PSPPPPPPPPASPLPPPPP-PPPPTPSS 137
Score = 73 (25.7 bits), Expect = 0.28, P = 0.25
Identities = 18/38 (47%), Positives = 20/38 (52%), Frame = -1
Query: 125 PRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
P PP TRP P+ PP +P SA L F PP P P
Sbjct: 65 PPPPTTRPPPIRPPF---SHPISAHLPWYFQPPPRPLP 99
>gi|6721113|gb|AAF26767.1|AC007396_16 (AC007396) T4O12.19 [Arabidopsis
thaliana]
Length = 605
Frame 1 hits (HSPs): _______ _____
__________________________________________________
Database sequence: | | | | || 605
0 150 300 450 600
Plus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.0057, P = 0.0057
Identities = 27/49 (55%), Positives = 30/49 (61%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRALEGLSGG-------GRGGMRGRGRVWGGRGRGRGGYH 147
+GRG GG N VN +E GG GRG RGRGR RGRGRGGY+
Sbjct: 416 RGRGRGGRGNAYVN--VEHEDGGWEREQSYGRGRGRGRGR--SSRGRGRGGYN 464
Score = 81 (28.5 bits), Expect = 0.23, P = 0.21
Identities = 20/27 (74%), Positives = 20/27 (74%), Frame = +1
Query: 61 EGLSGGGRGGMRGRGRVWGGRGRGRGG 141
EG S GGRG RGRGR GRGRGRGG
Sbjct: 400 EG-SPGGRGRGRGRGR---GRGRGRGG 422
Score = 80 (28.2 bits), Expect = 0.30, P = 0.26
Identities = 21/42 (50%), Positives = 23/42 (54%), Frame = +1
Query: 16 RGAGGLQNQLVNRA-LEGLSGGGRGGMRGRGRVWGGRGRGRGG 141
+G GG R +G G GRG RGRGR GRG GRGG
Sbjct: 548 QGRGGYDGPSQGRGGYDGPQGRGRG--RGRGRGGRGRGGGRGG 588
Score = 73 (25.7 bits), Expect = 1.7, P = 0.81
Identities = 23/45 (51%), Positives = 26/45 (57%), Frame = +1
Query: 16 RGAGGLQNQLVNRA-LEGLS-G-GGRGGMRGRGRVWGGRGRGRGGYHR 150
+G GG R +G S G GG G +GRGR GRGRGRGG R
Sbjct: 538 QGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRGR---GRGRGRGGRGR 582
Score = 72 (25.3 bits), Expect = 2.1, P = 0.88
Identities = 23/47 (48%), Positives = 25/47 (53%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRALEGLSGGG-RGGMRGRGRVWGGRGRGRGGYHR 150
+GRG GG N VN +E GG R GRGR GRGRGR R
Sbjct: 416 RGRGRGGRGNAYVN--VEHEDGGWEREQSYGRGR---GRGRGRSSRGR 458
Score = 71 (25.0 bits), Expect = 2.7, P = 0.94
Identities = 21/46 (45%), Positives = 25/46 (54%), Frame = +1
Query: 16 RGAGGLQNQLVNRA-LEGLSGGGRGGMRGRGRVWGGRGRGRGG---YH 147
+G GG R +G G GRG RGRGR GRG GRGG ++
Sbjct: 548 QGRGGYDGPSQGRGGYDGPQGRGRG--RGRGRGGRGRGGGRGGDGGFN 593
>gi|5902102 ref|NP_008869.1| small nuclear ribonucleoprotein D1 polypeptide
(16kD) >gi|6678055 ref|NP_033252.1|| small nuclear
ribonucleoprotein D1 >gi|134039|sp|P13641|SMD1_HUMAN SMALL NUCLEAR
RIBONUCLEOPROTEIN SM D1 (SNRNP CORE PROTEIN D1) (SM-D1) (SM-D
AUTOANTIGEN) >gi|88610|pir||A27668 Sm-D ribonucleoprotein
autoantigen - human >gi|6980598|pdb|1B34|A Chain A, Crystal
Structure Of The D1d2 Sub-Complex From The Human Snrnp Core Domain
>gi|338265|gb|AAA36620.1| (J03798) small nuclear riboprotein Sm-D
[Homo sapiens] >gi|1256741|gb|AAA96493.1| (M58558) Sm-D autoantigen
[Mus musculus]
Length = 119
Frame 1 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | 119
0 50 100
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 0.0059, P = 0.0059
Identities = 19/40 (47%), Positives = 27/40 (67%), Frame = +1
Query: 31 LQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGGYHR 150
++ ++ ++ E ++G GRG RGRGR GRGRGRGG R
Sbjct: 83 VEPKVKSKKREAVAGRGRGRGRGRGR---GRGRGRGGPRR 119
>gi|253168|gb|AAB22808.1| 3BP-1=Bcr/guanosine triphosphatase-activating
protein-rho homolog [mice, pre-B cells, Peptide, 339 aa]
Length = 339
Frame -1 hits (HSPs): _____ __
Frame -2 hits (HSPs): ___
Frame -3 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | 339
0 150 300
Minus Strand HSPs:
Score = 60 (21.1 bits), Expect = 0.0059, Sum P(3) = 0.0059
Identities = 11/22 (50%), Positives = 13/22 (59%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPP 75
P +P P+P TR P P LPP
Sbjct: 223 PTMPPPQPSSTRSSPPAPSLPP 244
Score = 54 (19.0 bits), Expect = 2.0, Sum P(2) = 0.87
Identities = 14/30 (46%), Positives = 16/30 (53%), Frame = -1
Query: 107 RPLPLIPPLPPPDNPSSALLTS*FCKPPAP 18
RP P P +PPP PSS + PPAP
Sbjct: 217 RPAPARPTMPPPQ-PSSTRSS-----PPAP 240
Score = 50 (17.6 bits), Expect = 6.7, Sum P(2) = 1.0
Identities = 14/37 (37%), Positives = 20/37 (54%), Frame = -3
Query: 159 TKLPMIPSSSSSTTTPDPASAPHTPSPTTRQSFQRSI 49
T P PSS+ S+ P P+ P + SP T Q+ R +
Sbjct: 224 TMPPPQPSSTRSSP-PAPSLPPGSVSPGTPQALPRRL 259
Score = 33 (11.6 bits), Expect = 0.0059, Sum P(3) = 0.0059
Identities = 5/19 (26%), Positives = 11/19 (57%), Frame = -2
Query: 199 QPGEV*RFLHHICNKVTDD 143
+PG LH +C+++ +
Sbjct: 35 EPGARLEALHDVCSRLPQE 53
Score = 32 (11.3 bits), Expect = 0.0059, Sum P(3) = 0.0059
Identities = 5/6 (83%), Positives = 5/6 (83%), Frame = -1
Query: 29 PPAPRP 12
PP PRP
Sbjct: 326 PPQPRP 331
>gi|422617|pir||S32644 nucleolin - African clawed frog
>gi|295899|emb|CAA51460.1| (X72957) nucleolin [Xenopus laevis]
Length = 705
Frame 1 hits (HSPs): _____
Annotated Domains: ________________________________
__________________________________________________
Database sequence: | | | | | | 705
0 150 300 450 600
__________________
Annotated Domains:
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 257..364
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 366..454
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 456..542
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 544..628
DOMO DM02740: NUCLEOLIN 630..703
Entrez domain: ribonucleoprotein repeat homolog 285..350
Entrez domain: ribonucleoprotein repeat homolog 377..440
Entrez domain: ribonucleoprotein repeat homolog 467..529
Entrez domain: ribonucleoprotein repeat homolog 555..619
PROSITE RNP_1: Eukaryotic putative RNA-binding r 413..420
PROSITE RNP_1: Eukaryotic putative RNA-binding r 502..509
PROSITE RNP_1: Eukaryotic putative RNA-binding r 592..599
__________________
Plus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.0069, P = 0.0069
Identities = 23/44 (52%), Positives = 25/44 (56%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGGY 144
G G GG + R G GGGRGG GRG GG GRGRGG+
Sbjct: 642 GGGRGGFGGRGGGRGGFGGRGGGRGGFGGRG---GGGGRGRGGF 682
Score = 81 (28.5 bits), Expect = 0.28, P = 0.24
Identities = 19/34 (55%), Positives = 21/34 (61%), Frame = +1
Query: 52 RALEGLSGGGRGGMRGRGRV---WGGRGRGRGGY 144
R G GGGRGG GRG +GGRG GRGG+
Sbjct: 635 RGGRGGFGGGRGGFGGRGGGRGGFGGRGGGRGGF 668
Score = 72 (25.3 bits), Expect = 2.6, P = 0.92
Identities = 20/44 (45%), Positives = 23/44 (52%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGG 141
+G G GG + R G G G GG RGRG +GGRG G G
Sbjct: 651 RGGGRGGFGGRGGGRG--GFGGRGGGGGRGRGG-FGGRGGGGFG 691
>gi|7512865|pir||T08776 hypothetical protein DKFZp586D0920.1 - human (fragment)
>gi|4884358|emb|CAB43291.1| (AL050146) hypothetical protein [Homo
sapiens]
Length = 502
Frame 1 hits (HSPs): ______
Frame -1 hits (HSPs): __
Frame -3 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | 502
0 150 300 450
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.0074, P = 0.0073
Identities = 22/47 (46%), Positives = 27/47 (57%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGGYHR 150
+GRG GG + NR G GG RGG + RG GG G RGG++R
Sbjct: 264 RGRGGGGGFQRYENR---GPPGGNRGGFQNRGGGSGGGGNYRGGFNR 307
Score = 71 (25.0 bits), Expect = 2.2, P = 0.89
Identities = 22/50 (44%), Positives = 25/50 (50%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGR--------GRGGY 144
+GRG GG + NR G GG RGG + RG GG G G GGY
Sbjct: 264 RGRGGGGGFQRYENR---GPPGGNRGGFQNRGGGSGGGGNYRGGFNRSGGGGY 313
Minus Strand HSPs:
Score = 48 (16.9 bits), Expect = 8.2, Sum P(2) = 1.0
Identities = 11/22 (50%), Positives = 16/22 (72%), Frame = -3
Query: 144 IPSSSSSTTTPDPAS-APHTPS 82
IP SS++T+TP +S +P PS
Sbjct: 381 IPGSSANTSTPTVSSYSPPQPS 402
Score = 37 (13.0 bits), Expect = 8.2, Sum P(2) = 1.0
Identities = 6/10 (60%), Positives = 7/10 (70%), Frame = -1
Query: 89 PPLPPPDNPS 60
PP PPP P+
Sbjct: 420 PPPPPPPPPA 429
>gi|3342234|gb|AAC27547.1| (U93909) nuclear antigen EBNA-1 [Cercopithecine
herpesvirus 15]
Length = 511
Frame 1 hits (HSPs): ______ _________
__________________________________________________
Database sequence: | | | | | 511
0 150 300 450
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.0075, P = 0.0075
Identities = 25/43 (58%), Positives = 26/43 (60%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGG--RGRGRG 138
+GRG GG R G GGG GG RGRGR GG RGRGRG
Sbjct: 167 RGRGRGGSAG---GRG--GRGGGGGGGSRGRGRGRGGGSRGRGRG 206
Score = 86 (30.3 bits), Expect = 0.055, P = 0.053
Identities = 22/42 (52%), Positives = 23/42 (54%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRG 138
G G G L +R G SG G GG RGRG GRGRGRG
Sbjct: 8 GNGLGYTGPGLESRP-GGASGSGSGGNRGRGAHGRGRGRGRG 48
Score = 86 (30.3 bits), Expect = 0.055, P = 0.053
Identities = 25/44 (56%), Positives = 26/44 (59%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGG------RGRGRG 138
+GRG GG R G GGG GG RGRGR GG RGRGRG
Sbjct: 167 RGRGRGGSAG---GRG--GRGGGGGGGSRGRGRGRGGGSRGRGRGRGRG 210
Score = 85 (29.9 bits), Expect = 0.070, P = 0.068
Identities = 22/46 (47%), Positives = 22/46 (47%), Frame = +1
Query: 4 SKKGRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGG 141
S G GAGG G G G GG RGRGR GG GRGG
Sbjct: 140 SSGGSGAGGS-----GAGGSGAGGSGAGGSRGRGRGRGGSAGGRGG 180
Score = 83 (29.2 bits), Expect = 0.11, P = 0.11
Identities = 25/46 (54%), Positives = 26/46 (56%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGGRGGMRGRG---RVWG-GRGRGRGG 141
G G G L +R G SG G GG RGRG R G GRGRGRGG
Sbjct: 8 GNGLGYTGPGLESRP-GGASGSGSGGNRGRGAHGRGRGRGRGRGRGG 53
Score = 78 (27.5 bits), Expect = 0.40, P = 0.33
Identities = 22/42 (52%), Positives = 22/42 (52%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRG 138
GRG GG R G GG RG RGRGR GRGRG G
Sbjct: 180 GRGGGGGGGSR-GRG-RGRGGGSRGRGRGRGR---GRGRGEG 216
Score = 66 (23.2 bits), Expect = 7.7, P = 1.0
Identities = 19/43 (44%), Positives = 19/43 (44%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGG 141
G GAGG G G G GG G GRGRGRGG
Sbjct: 134 GGGAGGSSGGS-GAGGSGAGGSGAGGSGAGGS--RGRGRGRGG 173
>gi|7508657|pir||T25404 hypothetical protein T28C6.1 - Caenorhabditis elegans
>gi|3880303|emb|CAA90992.1| (Z54238) T28C6.1 [Caenorhabditis
elegans]
Length = 274
Frame 1 hits (HSPs): _____________ _________________________
__________________________________________________
Database sequence: | | | | | | | 274
0 50 100 150 200 250
Plus Strand HSPs:
Score = 90 (31.7 bits), Expect = 0.0079, P = 0.0079
Identities = 22/45 (48%), Positives = 26/45 (57%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGGY 144
+G GG Q N+ G GGGRGG +G G WGG GRG GG+
Sbjct: 230 QGGSQGGSQGGWGNQG--GQQGGGRGGQQGPGG-WGGGGRG-GGW 270
Score = 81 (28.5 bits), Expect = 0.077, P = 0.074
Identities = 22/46 (47%), Positives = 23/46 (50%), Frame = +1
Query: 4 SKKGRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGG 141
S G G G + A G S GG GG RG GR GG G GRGG
Sbjct: 38 SDAGSGIGSSGGWGGSDASAGASAGGTGGGRGGGR--GGSGGGRGG 81
Score = 77 (27.1 bits), Expect = 0.21, P = 0.19
Identities = 18/29 (62%), Positives = 19/29 (65%), Frame = +1
Query: 55 ALEGLSGGGRGGMRGRGRVWGGRGRGRGG 141
A G +GGGRGG GRG GGRG G GG
Sbjct: 59 ASAGGTGGGRGG--GRGGSGGGRGGGSGG 85
Score = 75 (26.4 bits), Expect = 0.35, P = 0.29
Identities = 22/44 (50%), Positives = 23/44 (52%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGGY 144
GRG GG R G SGGGRGG G G GG G G GG+
Sbjct: 67 GRG-GGRGGSGGGRG--GGSGGGRGGSGGAGA--GGSGSGSGGW 105
Score = 72 (25.3 bits), Expect = 0.74, P = 0.52
Identities = 19/43 (44%), Positives = 25/43 (58%), Frame = +1
Query: 13 GRGA-GGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGG 141
G+G GG Q+ G +GGG+GG +G G GGRG +GG
Sbjct: 178 GQGGWGGSQDGGSQGGWGGQNGGGQGGNQGGG---GGRGGNQGG 218
Score = 71 (25.0 bits), Expect = 0.95, P = 0.61
Identities = 18/31 (58%), Positives = 19/31 (61%), Frame = +1
Query: 55 ALEGLSGGGRGGMRGR--GRVWGGRGRGRGG 141
A G +GGGRGG RG G GG G GRGG
Sbjct: 59 ASAGGTGGGRGGGRGGSGGGRGGGSGGGRGG 89
Score = 69 (24.3 bits), Expect = 1.6, P = 0.79
Identities = 18/42 (42%), Positives = 24/42 (57%), Frame = +1
Query: 16 RGAGGLQNQLVNRALEGLSGGGRGGMRGRGRV-WGGRGRGRGG 141
+G G QN +G GGGRGG +G + WGG+G +GG
Sbjct: 191 QGGWGGQNGGGQGGNQG-GGGGRGGNQGGEQGGWGGQGGSQGG 232
Score = 67 (23.6 bits), Expect = 2.6, P = 0.93
Identities = 19/47 (40%), Positives = 23/47 (48%), Frame = +1
Query: 4 SKKGRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGGY 144
S G G GG Q + G GG +GG G G GG G G+GG+
Sbjct: 138 SDSGSGQGGWGGQQGGNSNAGGWGGSQGGQNGGGGR-GGSG-GQGGW 182
Score = 64 (22.5 bits), Expect = 5.6, P = 1.0
Identities = 14/25 (56%), Positives = 17/25 (68%), Frame = +1
Query: 73 GGGRGGMRGRGRVWGGR--GRGRGGY 144
GGGRGG G+G WGG G +GG+
Sbjct: 170 GGGRGGSGGQGG-WGGSQDGGSQGGW 194
>gi|2331131|gb|AAB66884.1| (AF010579) glycine-rich protein [Oryza sativa]
Length = 162
Frame 1 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | 162
0 50 100 150
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 0.0081, P = 0.0081
Identities = 22/44 (50%), Positives = 25/44 (56%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGGY 144
G+ G +N VN A SGGG GG G G +GG GRG GGY
Sbjct: 71 GKELDG-RNITVNEAQSRRSGGGGGGYGGGGGGYGG-GRGGGGY 112
Score = 70 (24.6 bits), Expect = 0.46, P = 0.37
Identities = 20/48 (41%), Positives = 20/48 (41%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGG----RGGMRGRGRVWGGRGRGRGGY 144
G G GG G GGG GG G G GGRG G GGY
Sbjct: 97 GGGGGGYGGGRGGGGYGGGGGGGYGRREGGYGGGGGYGGGRGGGGGGY 144
Score = 67 (23.6 bits), Expect = 1.0, P = 0.64
Identities = 22/52 (42%), Positives = 25/52 (48%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGR-------GRGRGGYHR 150
G+ G +N VN A SGGG GG G G +GG G G GGY R
Sbjct: 71 GKELDG-RNITVNEAQSRRSGGGGGGYGGGGGGYGGGRGGGGYGGGGGGGYGR 122
Score = 62 (21.8 bits), Expect = 3.7, P = 0.98
Identities = 20/43 (46%), Positives = 20/43 (46%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGG 141
G G GG R EG GGG G GRG GG G RGG
Sbjct: 109 GGGYGGGGGGGYGRR-EGGYGGGGGYGGGRGGGGGGYGGSRGG 150
>gi|7670506|dbj|BAA95102.1| (AB041654) unnamed protein product [Mus musculus]
Length = 163
Frame 1 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | 163
0 50 100 150
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 0.0083, P = 0.0083
Identities = 24/46 (52%), Positives = 29/46 (63%), Frame = +1
Query: 7 KKGRGAGGLQNQLVNRAL--EGLSGGGRGGMRGRGRV-WGGRGRGRG 138
++G GGL+ R L G+S GRG M GRGR +GGRGRGRG
Sbjct: 70 QRGLPRGGLRGGRATRTLLRGGMSLRGRG-MIGRGRGGFGGRGRGRG 115
Score = 83 (29.2 bits), Expect = 0.014, P = 0.014
Identities = 19/39 (48%), Positives = 24/39 (61%), Frame = +1
Query: 64 GLSGGGRGGMRGRGRVWGGRGRGRGGYHR*LCCRCDVEN 180
G+ G GRGG GRGR GRGRGRG R + + ++N
Sbjct: 98 GMIGRGRGGFGGRGR---GRGRGRGALTRPVLTKEQLDN 133
>gi|7303644|gb|AAF58696.1| (AE003826) CG7738 gene product [Drosophila
melanogaster]
Length = 104
Frame 1 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | | | 104
0 20 40 60 80 100
Plus Strand HSPs:
Score = 83 (29.2 bits), Expect = 0.0096, P = 0.0096
Identities = 21/34 (61%), Positives = 22/34 (64%), Frame = +1
Query: 52 RALEGLSGG--GRGGMRGRGRVWGGRGR--GRGGY 144
R L G GG GRGG GRG WGGRG GRGG+
Sbjct: 51 RQLGGWGGGWGGRGGWGGRGG-WGGRGGWGGRGGW 84
Score = 75 (26.4 bits), Expect = 0.068, P = 0.065
Identities = 17/27 (62%), Positives = 18/27 (66%), Frame = +1
Query: 64 GLSG-GGRGGMRGRGRVWGGRGRGRGGY 144
G G GGRGG GRG WGGRG GG+
Sbjct: 62 GRGGWGGRGGWGGRGG-WGGRGGWGGGW 88
Score = 71 (25.0 bits), Expect = 0.18, P = 0.16
Identities = 19/40 (47%), Positives = 20/40 (50%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRG 132
GRG G + R G GG GG GRG WGGRG G
Sbjct: 62 GRGGWGGRGGWGGRGGWGGRGGWGGGWGGRGG-WGGRGGG 100
Score = 70 (24.6 bits), Expect = 0.23, P = 0.20
Identities = 19/32 (59%), Positives = 19/32 (59%), Frame = +1
Query: 64 GLSG-GGRGGMRGRGRV---WGGRGR--GRGG 141
G G GGRGG GRG WGGRG GRGG
Sbjct: 68 GRGGWGGRGGWGGRGGWGGGWGGRGGWGGRGG 99
Score = 66 (23.2 bits), Expect = 0.61, P = 0.46
Identities = 17/37 (45%), Positives = 18/37 (48%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGR 123
GRG G + R G GGRGG GRG W GR
Sbjct: 68 GRGGWGGRGGWGGRGGWGGGWGGRGGWGGRGGGWYGR 104
>gi|7450791|pir||T09555 fibrillarin - Arabidopsis thaliana
>gi|4914455|emb|CAB43694.1| (AL050400) fibrillarin-like protein
[Arabidopsis thaliana] >gi|7269413|emb|CAB81373.1| (AL161563)
fibrillarin-like protein [Arabidopsis thaliana]
Length = 320
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | | | 320
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 90 (31.7 bits), Expect = 0.010, P = 0.010
Identities = 24/42 (57%), Positives = 25/42 (59%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVW---GGRGRGRG 138
GRG GG R G SGG GG RG GR + GGRGRGRG
Sbjct: 15 GRGRGGYSG---GRGDGGFSGGRGGGGRGGGRGFSDRGGRGRGRG 56
Score = 68 (23.9 bits), Expect = 2.5, P = 0.92
Identities = 20/43 (46%), Positives = 20/43 (46%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRG-RGRGG 141
GRG GG R G GRG RG GGRG GRGG
Sbjct: 33 GRGGGGRGG---GRGFSDRGGRGRGRGPPRGGARGGRGPAGRGG 73
Score = 66 (23.2 bits), Expect = 4.2, P = 0.99
Identities = 19/31 (61%), Positives = 19/31 (61%), Frame = +1
Query: 64 GLSGG-GRGGM---RGRGRVWGGRGRG-RGG 141
G SGG GRGG RG G GGRG G RGG
Sbjct: 11 GFSGGRGRGGYSGGRGDGGFSGGRGGGGRGG 41
Score = 65 (22.9 bits), Expect = 5.4, P = 1.0
Identities = 14/21 (66%), Positives = 14/21 (66%), Frame = +1
Query: 70 SGGGRGGMRGRGRVWGGRGRG 132
SGGG G RGRG GGRG G
Sbjct: 8 SGGGFSGGRGRGGYSGGRGDG 28
Score = 63 (22.2 bits), Expect = 8.9, P = 1.0
Identities = 15/25 (60%), Positives = 16/25 (64%), Frame = +1
Query: 70 SGGGRGGMRGRGRVWGGRGRGRGGY 144
SGGG G RGRG GGRG G G+
Sbjct: 8 SGGGFSGGRGRGGYSGGRGDG--GF 30
>gi|7504243|pir||T15188 hypothetical protein F55A12.6 - Caenorhabditis elegans
>gi|2088666|gb|AAB54124.1| (AF003130) F55A12.6 gene product
[Caenorhabditis elegans]
Length = 448
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 448
0 150 300
Plus Strand HSPs:
Score = 92 (32.4 bits), Expect = 0.010, P = 0.010
Identities = 23/44 (52%), Positives = 25/44 (56%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGG-RGRGRGGY 144
GRG GG + R G GGG G GRG WGG RG GRGG+
Sbjct: 284 GRGGGGSRGG-GGRGGGGRGGGGGRGGGGRGGGWGGGRGGGRGGW 327
Score = 86 (30.3 bits), Expect = 0.046, P = 0.045
Identities = 23/44 (52%), Positives = 25/44 (56%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGGY 144
GRG GG + R G GGG GG RG GR G GRGRGG+
Sbjct: 295 GRGGGG-RGGGGGRGGGG-RGGGWGGGRGGGRGGWGEGRGRGGW 336
Score = 85 (29.9 bits), Expect = 0.059, P = 0.057
Identities = 24/45 (53%), Positives = 25/45 (55%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGGRGGM-RGRGRV-WGGRGRGRGGYH 147
GRG GG G GGGRGG GRGR WGG GRG G+H
Sbjct: 306 GRGGGGRGG-----GWGGGRGGGRGGWGEGRGRGGWGG-GRGGSGWH 346
>gi|6523547|emb|CAB62280.1| (AJ242540) hydroxyproline-rich glycoprotein DZ-HRGP
[Volvox carteri f. nagariensis]
Length = 409
Frame -1 hits (HSPs): _________________________________________
__________________________________________________
Database sequence: | | | | 409
0 150 300
Minus Strand HSPs:
Score = 91 (32.0 bits), Expect = 0.012, P = 0.012
Identities = 22/43 (51%), Positives = 24/43 (55%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPD-NPSSALLTS*FCKPPAPRP 12
PP P P PP + P P PP PPP NP S S PP+PRP
Sbjct: 189 PPSPPPSPPPSPP-PSPPPRPPPSPNPPSPRPPS--PSPPSPRP 229
Score = 90 (31.7 bits), Expect = 0.015, P = 0.015
Identities = 20/43 (46%), Positives = 23/43 (53%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P PRPP + P P PP PPP P + PP+PRP
Sbjct: 181 PPSPPPRPPPSPP-PSPPPSPPPSPPPRPPPSP---NPPSPRP 219
Score = 90 (31.7 bits), Expect = 0.015, P = 0.015
Identities = 19/43 (44%), Positives = 22/43 (51%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP+ P PPLPPP +P L PP+P P
Sbjct: 246 PPPPAPPPPRPPPPSPPPPLPPPPSPPPPLPPPPSPPPPSPPP 288
Score = 89 (31.3 bits), Expect = 0.019, P = 0.019
Identities = 19/43 (44%), Positives = 21/43 (48%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP P P PP PPP P S + PP+P P
Sbjct: 140 PPPPPPPPPSPSPPPSPPPSPPPSPPPSPPPSPPPSPPPSPPP 182
Score = 88 (31.0 bits), Expect = 0.025, P = 0.024
Identities = 19/43 (44%), Positives = 21/43 (48%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP P P PP PPP P S + PP+P P
Sbjct: 136 PPNPPPPPPPPPPSPSPPPSPPPSPPPSPPPSPPPSPPPSPPP 178
Score = 88 (31.0 bits), Expect = 0.025, P = 0.024
Identities = 20/45 (44%), Positives = 21/45 (46%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPP--LPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP RP P PP PPP +P L PP P P
Sbjct: 234 PPFPPPSPPPPRPPPPAPPPPRPPPPSPPPPLPPPPSPPPPLPPP 278
Score = 86 (30.3 bits), Expect = 0.041, P = 0.040
Identities = 19/43 (44%), Positives = 21/43 (48%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP P PPLPPP +P PP+PRP
Sbjct: 256 PPPPSPPPPLPPPPSPPPPLPPPPSPPPPSPPPPSPLPPSPRP 298
Score = 85 (29.9 bits), Expect = 0.052, P = 0.051
Identities = 19/43 (44%), Positives = 22/43 (51%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP + P P PP PPP P S + PP+P P
Sbjct: 145 PPPPSPSPPPSPP-PSPPPSPPPSPPPSPPPSPPPSPPPSPPP 186
Score = 85 (29.9 bits), Expect = 0.052, P = 0.051
Identities = 19/43 (44%), Positives = 22/43 (51%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP + P P PP PPP P S + PP+P P
Sbjct: 173 PPSPPPSPPPSPP-PRPPPSPPPSPPPSPPPSPPPRPPPSPNP 214
Score = 85 (29.9 bits), Expect = 0.052, P = 0.051
Identities = 20/43 (46%), Positives = 20/43 (46%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
P P PRPP RP P PP PPP P PP PRP
Sbjct: 222 PSPPSPRPPPRRP-PFPPPSPPPPRPPPPA-------PPPPRP 256
Score = 84 (29.6 bits), Expect = 0.067, P = 0.064
Identities = 20/43 (46%), Positives = 22/43 (51%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPP--LPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP RP P PP PPP +P L PP+P P
Sbjct: 234 PPFPPPSPPPPRPPPPAPPPPRPPPPSPPPPLPP-----PPSPPP 273
Score = 84 (29.6 bits), Expect = 0.067, P = 0.064
Identities = 18/43 (41%), Positives = 21/43 (48%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP P +PP P P PS + F +PP P P
Sbjct: 276 PPPPSPPPPSPPPPSPLPPSPRPPKPSPP--NNPFPRPPPPNP 316
Score = 83 (29.2 bits), Expect = 0.085, P = 0.082
Identities = 19/43 (44%), Positives = 21/43 (48%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP + P P PP PPP NP PP+P P
Sbjct: 114 PPPPPPPPPPSPPPPPPPPPPPPPNPPPPPPPP----PPSPSP 152
Score = 83 (29.2 bits), Expect = 0.085, P = 0.082
Identities = 19/43 (44%), Positives = 21/43 (48%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP P P PP PPP P S + PP+P P
Sbjct: 136 PPNPPPPPPPPPPSPSPPPSPPPSPPPSPPPSP----PPSPPP 174
Score = 83 (29.2 bits), Expect = 0.085, P = 0.082
Identities = 19/43 (44%), Positives = 22/43 (51%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP + P P PP PPP P S + PP+P P
Sbjct: 153 PPSPPPSPPPSPP-PSPPPSPPPSPPPSPPPSPPPRPPPSPPP 194
Score = 83 (29.2 bits), Expect = 0.085, P = 0.082
Identities = 19/43 (44%), Positives = 21/43 (48%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP + P P PP PPP P S PP+P P
Sbjct: 157 PPSPPPSPPPSPP-PSPPPSPPPSPPPSPPPRPPPSPPPSPPP 198
Score = 83 (29.2 bits), Expect = 0.085, P = 0.082
Identities = 19/43 (44%), Positives = 22/43 (51%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP + P P PP PPP P S + PP+P P
Sbjct: 165 PPSPPPSPPPSPP-PSPPPSPPPRPPPSPPPSPPPSPPPSPPP 206
Score = 83 (29.2 bits), Expect = 0.085, P = 0.082
Identities = 19/43 (44%), Positives = 21/43 (48%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP + P P PP PPP P S + PP P P
Sbjct: 169 PPSPPPSPPPSPP-PSPPPRPPPSPPPSPPPSPPPSPPPRPPP 210
Score = 81 (28.5 bits), Expect = 0.14, P = 0.13
Identities = 19/43 (44%), Positives = 19/43 (44%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP P P PP PPP P S PP P P
Sbjct: 97 PPPPPPPPPPPPPSPPPPPPPPPPPPPSPPPPPPPPPPPPPNP 139
Score = 81 (28.5 bits), Expect = 0.14, P = 0.13
Identities = 19/43 (44%), Positives = 21/43 (48%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP P P PP PPP +PS PP+P P
Sbjct: 125 PPPPPPPPPPPPPNPPPPPPPPPPSPSPPP-----SPPPSPPP 162
Score = 81 (28.5 bits), Expect = 0.14, P = 0.13
Identities = 19/43 (44%), Positives = 20/43 (46%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP P P PP PPP P S PP+P P
Sbjct: 136 PPNPPPPPPPPPPSPSPPPSPPPSPPPSP--------PPSPPP 170
Score = 80 (28.2 bits), Expect = 0.18, P = 0.16
Identities = 18/43 (41%), Positives = 21/43 (48%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP + P P PP PPP P + PP+P P
Sbjct: 161 PPSPPPSPPPSPP-PSPPPSPPPSPPPRPPPSPPPSPPPSPPP 202
Score = 80 (28.2 bits), Expect = 0.18, P = 0.16
Identities = 17/43 (39%), Positives = 20/43 (46%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP+ P PP PPP +P+ PP P P
Sbjct: 321 PPPPSPNPPRPPPPSPPPPRPPPPSPNPPRPPPPSPSPPKPPP 363
Score = 79 (27.8 bits), Expect = 0.23, P = 0.21
Identities = 18/43 (41%), Positives = 20/43 (46%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP P+P PP PPP P + PP P P
Sbjct: 82 PPSPSPPPPPPPPVPPPPPPPPPPPPPPSPPPP---PPPPPPP 121
Score = 79 (27.8 bits), Expect = 0.23, P = 0.21
Identities = 18/43 (41%), Positives = 20/43 (46%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP P+P PP PPP P + PP P P
Sbjct: 82 PPSPSPPPPPPPPVPPPPPPPPPPPPPPS-------PPPPPPP 117
Score = 79 (27.8 bits), Expect = 0.23, P = 0.21
Identities = 20/43 (46%), Positives = 20/43 (46%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
P P PRPP P P PP PP NP S PP PRP
Sbjct: 304 PNNPFPRPPPPNPPPPRPP-PPSPNPPRPPPPS----PPPPRP 341
Score = 79 (27.8 bits), Expect = 0.23, P = 0.21
Identities = 19/44 (43%), Positives = 20/44 (45%), Frame = -1
Query: 140 PPLPLPRP-PQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P P P P P PP PPP P S + PP P P
Sbjct: 147 PPSPSPPPSPPPSPPPSPPPSPPPSPPPSPPPSPPPSPPPRPPP 190
Score = 78 (27.5 bits), Expect = 0.30, P = 0.26
Identities = 18/43 (41%), Positives = 19/43 (44%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P+P PP P P PP PPP P PP P P
Sbjct: 91 PPPPVPPPPPPPPPPPPPPSPPPPPPPPPPPPPSPPPPPPPPP 133
Score = 78 (27.5 bits), Expect = 0.30, P = 0.26
Identities = 17/43 (39%), Positives = 21/43 (48%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP+ P PP PPP +P+ +PP P P
Sbjct: 321 PPPPSPNPPRPPPPSPPPPRPPPPSPNPP-------RPPPPSP 356
Score = 77 (27.1 bits), Expect = 0.38, P = 0.32
Identities = 18/43 (41%), Positives = 21/43 (48%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP+ P PP PPP +PS PP+P P
Sbjct: 331 PPPPSPPPPRPPPPSPNPPRPPPPSPSPPKPPP----PPSPPP 369
Score = 76 (26.8 bits), Expect = 0.49, P = 0.38
Identities = 21/46 (45%), Positives = 22/46 (47%), Frame = -1
Query: 140 PPLPLP---RPPQTRPLPLIP-PLPPPDNPSSALLTS*FCKPPAPRP 12
PP PLP RPP+ P P P P PPP NP PP P P
Sbjct: 288 PPSPLPPSPRPPKPSP-PNNPFPRPPPPNPPPPRPPPPSPNPPRPPP 333
Score = 75 (26.4 bits), Expect = 0.62, P = 0.46
Identities = 17/43 (39%), Positives = 19/43 (44%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP+ P PP PPP +P PP P P
Sbjct: 311 PPPPNPPPPRPPPPSPNPPRPPPPSPPPPRPPPPSPNPPRPPP 353
Score = 74 (26.0 bits), Expect = 0.80, P = 0.55
Identities = 19/43 (44%), Positives = 20/43 (46%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLP-PPDNPSSALLTS*FCKPPAPRP 12
PP P P PP P PP P PP+NP PP PRP
Sbjct: 281 PPPPSPPPPSPLPPSPRPPKPSPPNNPFPRPPPP---NPPPPRP 321
Score = 72 (25.3 bits), Expect = 1.3, P = 0.73
Identities = 19/43 (44%), Positives = 20/43 (46%), Frame = -1
Query: 140 PPLP-LPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PPLP P PP P P+ PP PPP P PP P P
Sbjct: 79 PPLPPSPSPPPPPPPPVPPPPPPPPPP-----------PPPPSP 111
Score = 72 (25.3 bits), Expect = 1.3, P = 0.73
Identities = 17/44 (38%), Positives = 20/44 (45%), Frame = -1
Query: 143 YPPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
+PP P P PP P P +PP P P P + PP P P
Sbjct: 65 HPPPP-PPPPPPPPQPPLPPSPSPPPPPPPPVPPPPPPPPPPPP 107
Score = 68 (23.9 bits), Expect = 3.5, P = 0.97
Identities = 14/28 (50%), Positives = 15/28 (53%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPP--PDNP 63
PP P P PP+ P P PP PP P P
Sbjct: 351 PPPPSPSPPKPPPPPSPPPRPPRRPPRP 378
Score = 68 (23.9 bits), Expect = 3.5, P = 0.97
Identities = 19/43 (44%), Positives = 20/43 (46%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P P+ P P PP PPP P L S PP P P
Sbjct: 56 PP-PTPSGPEHPPPPPPPPPPPPQPP---LPPSPSPPPPPPPP 94
>gi|1055224|gb|AAA81168.1| (U20977) cellular nucleic acid binding protein
[Xenopus laevis]
Length = 168
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | 168
0 50 100 150
Plus Strand HSPs:
Score = 84 (29.6 bits), Expect = 0.012, P = 0.012
Identities = 19/28 (67%), Positives = 21/28 (75%), Frame = +1
Query: 85 GGMRGRGRVWGGRGRGRGGYH--R*LCCRC 168
GG RGRG GGRGRGRGG+ R +C RC
Sbjct: 22 GGGRGRG---GGRGRGRGGFSSSRDICYRC 48
>gi|6782438|gb|AAF28386.1|AF151215_1 (AF151215) glycine-rich protein [Nicotiana
glauca]
Length = 132
Frame 1 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | 132
0 50 100
Plus Strand HSPs:
Score = 82 (28.9 bits), Expect = 0.012, P = 0.012
Identities = 21/35 (60%), Positives = 21/35 (60%), Frame = +1
Query: 64 GLSGGGR-GGMRGRGRVWGGRGRG-RGGYHR*LCC 162
G G G GG RGRG GGRG G RGGY R CC
Sbjct: 69 GYPGRGYPGGGRGRGYPGGGRGGGGRGGYCRYGCC 103
Score = 67 (23.6 bits), Expect = 0.59, P = 0.44
Identities = 21/41 (51%), Positives = 21/41 (51%), Frame = +1
Query: 64 GLSGGGR--GGMRGRGRVWGGRGRG-----RGGYHR*LCCR 165
G GGG GG GRG GGRGRG RGG R CR
Sbjct: 59 GYPGGGYPGGGYPGRGYPGGGRGRGYPGGGRGGGGRGGYCR 99
>gi|7263963|emb|CAB81647.1| (AL078621) bA395L14.13 (acrosin) [Homo sapiens]
Length = 232
Frame -1 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | 232
0 50 100 150 200
Minus Strand HSPs:
Score = 87 (30.6 bits), Expect = 0.012, P = 0.012
Identities = 23/54 (42%), Positives = 28/54 (51%), Frame = -1
Query: 173 TSHLQQSYR*YPPLPLP-RPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
++HL ++ PP PLP RPP +P P P PPP P S L PP P P
Sbjct: 132 SAHLPWYFQ-PPPRPLPPRPPAAQPRPPPSPPPPPPPPPSPLPPP--PPPPPPTP 183
Score = 75 (26.4 bits), Expect = 0.26, P = 0.23
Identities = 17/28 (60%), Positives = 17/28 (60%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSS 57
PP P P PP PLP PP PPP PSS
Sbjct: 161 PPPPPPPPPS--PLPPPPP-PPPPTPSS 185
Score = 73 (25.7 bits), Expect = 0.44, P = 0.36
Identities = 18/38 (47%), Positives = 20/38 (52%), Frame = -1
Query: 125 PRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
P PP TRP P+ PP +P SA L F PP P P
Sbjct: 113 PPPPTTRPPPIRPPF---SHPLSAHLPWYFQPPPRPLP 147
>gi|4550|emb|CAA46989.1| (X66278) NOP3 [Saccharomyces cerevisiae]
Length = 233
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | 233
0 50 100 150 200
Plus Strand HSPs:
Score = 87 (30.6 bits), Expect = 0.012, P = 0.012
Identities = 21/44 (47%), Positives = 26/44 (59%), Frame = +1
Query: 16 RGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGGYH 147
RG GG + + R G GG RGG RGRG + GRG RGG++
Sbjct: 68 RGRGGFRGRGGFRG--GFRGGYRGGFRGRGN-FRGRGGARGGFN 108
Score = 69 (24.3 bits), Expect = 1.2, P = 0.70
Identities = 17/27 (62%), Positives = 18/27 (66%), Frame = +1
Query: 73 GG--GRGGMRGRGRVWGG-RGRGRGGY 144
GG GRGG RGRG GG RG RGG+
Sbjct: 65 GGFRGRGGFRGRGGFRGGFRGGYRGGF 91
>gi|387047|gb|AAA36961.1| (M13757) nucleolin [Cricetus cricetus]
Length = 192
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 192
0 50 100 150
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 0.013, P = 0.013
Identities = 18/27 (66%), Positives = 19/27 (70%), Frame = +1
Query: 64 GLSGGGRGGMRGRGRVWGGRGRGRGGY 144
G GGGRGG GRG GGRG GRGG+
Sbjct: 132 GGRGGGRGGFGGRG---GGRGGGRGGF 155
Score = 84 (29.6 bits), Expect = 0.018, P = 0.017
Identities = 21/46 (45%), Positives = 23/46 (50%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRA--LEGLSGGGRGGMRGRGRVWGGRGRGRGG 141
+G G GG + R G G GRGG GRG GGRG G GG
Sbjct: 134 RGGGRGGFGGRGGGRGGGRGGFGGRGRGGFGGRGGFRGGRGGGGGG 179
Score = 83 (29.2 bits), Expect = 0.023, P = 0.023
Identities = 22/41 (53%), Positives = 24/41 (58%), Frame = +1
Query: 19 GAGGLQNQLVNRALEGLSGGGRGGMRGRGRV-WGGRGRGRGG 141
G GG + R G GGGRGG GRGR +GGRG RGG
Sbjct: 133 GRGGGRGGFGGRG--GGRGGGRGGFGGRGRGGFGGRGGFRGG 172
Score = 83 (29.2 bits), Expect = 0.023, P = 0.023
Identities = 24/46 (52%), Positives = 28/46 (60%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRG----RGGY 144
K +G GG + R G GGGRGG GRG +GGRGRG RGG+
Sbjct: 124 KPKGEGGFGGRGGGRGGFGGRGGGRGG--GRGG-FGGRGRGGFGGRGGF 169
Score = 64 (22.5 bits), Expect = 3.1, P = 0.96
Identities = 18/39 (46%), Positives = 20/39 (51%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRG 126
+G G GG + R G GGRGG RG GR GG G
Sbjct: 144 RGGGRGGGRGGFGGRGRGGF--GGRGGFRG-GRGGGGGG 179
>gi|1914853|gb|AAC53192.1| (U92455) WW domain binding protein 7; WBP7 [Mus
musculus]
Length = 290
Frame -1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | 290
0 50 100 150 200 250
Minus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.014, P = 0.014
Identities = 21/43 (48%), Positives = 22/43 (51%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP PLP PP T P P PLPPP +P L PP P P
Sbjct: 50 PPPPLP-PPSTSPPPPASPLPPPVSPPPPL-----SPPPYPAP 86
Score = 74 (26.0 bits), Expect = 0.49, P = 0.39
Identities = 20/44 (45%), Positives = 22/44 (50%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRPF 9
PP PLP PP T P P PLPPP +P L PP P+
Sbjct: 50 PPPPLP-PPSTSPPPPASPLPPPVSPPPPL------SPP---PY 83
>gi|2130461|pir||S55785 nucleolar protein gar2 - fission yeast
(Schizosaccharomyces pombe) >gi|663262|emb|CAA88179.1| (Z48166)
gar2 [Schizosaccharomyces pombe]
Length = 500
Frame 1 hits (HSPs): ___
Annotated Domains: ________ ________
__________________________________________________
Database sequence: | | | | | 500
0 150 300 450
__________________
Annotated Domains:
Entrez domain: ribonucleoprotein repeat homolog 264..331
Entrez domain: ribonucleoprotein repeat homolog 367..434
PROSITE RNP_1: Eukaryotic putative RNA-binding r 304..311
PROSITE RNP_1: Eukaryotic putative RNA-binding r 407..414
__________________
Plus Strand HSPs:
Score = 91 (32.0 bits), Expect = 0.015, P = 0.015
Identities = 19/27 (70%), Positives = 19/27 (70%), Frame = +1
Query: 64 GLSG-GGRGGMRGRGRVWGGRGRGRGG 141
G G GGRGG GRG GGRGRGRGG
Sbjct: 452 GRGGFGGRGGFGGRGGFGGGRGRGRGG 478
>gi|6226864|sp|P41891|GAR2_SCHPO GAR2 PROTEIN >gi|7492321|pir||T37634
pre-ribopsomal particle assembly protein - fission yeast
(Schizosaccharomyces pombe) >gi|7523472|emb|CAB86413.1| (AL163191)
gar2 protein [Schizosaccharomyces pombe]
Length = 500
Frame 1 hits (HSPs): ___
Annotated Domains: _____________________________________________
__________________________________________________
Database sequence: | | | | | 500
0 150 300 450
__________________
Annotated Domains:
BLOCKS BL00030A: Eukaryotic RNA-binding region 368..386
BLOCKS BL00030B: Eukaryotic RNA-binding region 407..416
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 258..340
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 361..442
Entrez Domain: GLU/SER-RICH. 81..236
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 265..270
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 304..311
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 368..373
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 407..414
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 265..336
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 368..438
PRODOM PD027445: GAR2_SCHPO 1..65
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 72..310
PRODOM PD027707: GAR2_SCHPO 312..367
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 369..404
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 407..443
PROSITE RNP_1: Eukaryotic putative RNA-binding r 304..311
PROSITE RNP_1: Eukaryotic putative RNA-binding r 407..414
__________________
Plus Strand HSPs:
Score = 91 (32.0 bits), Expect = 0.015, P = 0.015
Identities = 19/27 (70%), Positives = 19/27 (70%), Frame = +1
Query: 64 GLSG-GGRGGMRGRGRVWGGRGRGRGG 141
G G GGRGG GRG GGRGRGRGG
Sbjct: 452 GRGGFGGRGGFGGRGGFGGGRGRGRGG 478
>gi|7657317 ref|NP_056631.1| U6 snRNA-associated SM-like protein 4
>gi|6692064|emb|CAB65729.1| (AJ249439) Lsm4 protein [Mus musculus]
Length = 137
Frame 1 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | 137
0 50 100
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 0.016, P = 0.016
Identities = 22/43 (51%), Positives = 25/43 (58%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGG-RGRGRG 138
KGRG GG Q + + G+ G GRG GRGR GG G GRG
Sbjct: 85 KGRGRGGPQQK--QQKGRGMGGAGRGVFGGRGR--GGIPGAGRG 124
Score = 66 (23.2 bits), Expect = 0.86, P = 0.58
Identities = 19/39 (48%), Positives = 22/39 (56%), Frame = +1
Query: 10 KGRGAGG-LQNQLVNRAL----EGLSGG-GRGGMRGRGR 108
KGRG GG Q Q R + G+ GG GRGG+ G GR
Sbjct: 85 KGRGRGGPQQKQQKGRGMGGAGRGVFGGRGRGGIPGAGR 123
Score = 58 (20.4 bits), Expect = 7.5, P = 1.0
Identities = 14/20 (70%), Positives = 15/20 (75%), Frame = +1
Query: 73 GGGRGGMRGRGRVWGGRGRG 132
G G GG GRG V+GGRGRG
Sbjct: 99 GRGMGGA-GRG-VFGGRGRG 116
Score = 57 (20.1 bits), Expect = 9.7, P = 1.0
Identities = 17/36 (47%), Positives = 18/36 (50%), Frame = +1
Query: 61 EGLSGGGRGG-----MRGRGRVWGGRG----RGRGG 141
E G GRGG +GRG GRG RGRGG
Sbjct: 82 EAAKGRGRGGPQQKQQKGRGMGGAGRGVFGGRGRGG 117
>gi|7500378|pir||T21689 hypothetical protein F33A8.3 - Caenorhabditis elegans
>gi|3876637|emb|CAB04257.1| (Z81525) similar to 'Cold-shock'
DNA-binding domain~cDNA EST EMBL:D72094 comes from this gene~cDNA
EST EMBL:D74510 comes from this gene~cDNA EST EMBL:D74889 comes
from this gene~cDNA EST EMBL:D75994 comes from this gene~cDNA EST
yk215a5.5 comes from th>
Length = 208
Frame 1 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | | 208
0 50 100 150 200
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 0.016, P = 0.016
Identities = 23/46 (50%), Positives = 26/46 (56%), Frame = +1
Query: 13 GRGAGGLQN--QLVNRALEGLSGGGRGGMRGRGRVWGGRGRG-RGG 141
GRG G + + R +G GGRGG R GR GGRGRG RGG
Sbjct: 156 GRGGGRTNSGGEETARDTDGGERGGRGGGRRGGRGRGGRGRGGRGG 201
Score = 75 (26.4 bits), Expect = 0.22, P = 0.19
Identities = 22/49 (44%), Positives = 26/49 (53%), Frame = +1
Query: 13 GRGAGGLQN--QLVNRALEGLSGGGRGGMRGRGRVWGGRGRG----RGG 141
GRG G + + R +G GGRGG R GR GGRGRG +GG
Sbjct: 156 GRGGGRTNSGGEETARDTDGGERGGRGGGRRGGRGRGGRGRGGRGGQGG 204
Score = 73 (25.7 bits), Expect = 0.36, P = 0.30
Identities = 23/44 (52%), Positives = 29/44 (65%), Frame = +1
Query: 10 KGR--GAGGLQNQLVNR-ALEGLS--GGGRGGMRGRGRVWGGRGRGR 135
+GR G GG+++ +R A EG + GGGRGG R G GGRG GR
Sbjct: 118 RGRRGGRGGIRHDSGSRDAEEGGAPRGGGRGGSRRGG---GGRGGGR 161
Score = 67 (23.6 bits), Expect = 1.7, P = 0.81
Identities = 22/43 (51%), Positives = 27/43 (62%), Frame = +1
Query: 10 KGR--GAGGLQNQLVNR-ALEGLSGGGRGGMRGRGRVWGGRGRGRG 138
+GR G GG+++ +R A EG G RGG RG R GG GRG G
Sbjct: 118 RGRRGGRGGIRHDSGSRDAEEG--GAPRGGGRGGSRRGGG-GRGGG 160
>gi|929566|emb|CAA28903.1| (X05285) fibrillarin [Drosophila melanogaster]
Length = 147
Frame 1 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 0.017, P = 0.017
Identities = 20/44 (45%), Positives = 22/44 (50%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGGY 144
GRG GG + G G G GG G GR GGRG G GG+
Sbjct: 69 GRGGGGGGGRGAFGGRGGGGGRGGGGRGGGGRGGGGRGGGAGGF 112
Score = 77 (27.1 bits), Expect = 0.052, P = 0.051
Identities = 23/48 (47%), Positives = 26/48 (54%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRALEGLSGGGRGGMRGRGR-VWGGRG----RGRGG 141
+GRG GG + G GGGRGG G GR +GGRG RG GG
Sbjct: 47 RGRGGGGDRGGRGGFG-GGRGGGGRGGGGGGGRGAFGGRGGGGGRGGGG 94
Score = 76 (26.8 bits), Expect = 0.068, P = 0.066
Identities = 22/45 (48%), Positives = 25/45 (55%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGGY 144
+GRG GG +R G GGGRGG GRG GG G GRG +
Sbjct: 47 RGRGGGG------DRGGRGGFGGGRGG-GGRG---GGGGGGRGAF 81
Score = 75 (26.4 bits), Expect = 0.091, P = 0.087
Identities = 17/34 (50%), Positives = 20/34 (58%), Frame = +1
Query: 40 QLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGG 141
++ +R G GGG GG RGRG GG G G GG
Sbjct: 12 RIQSRGGGGGGGGGGGGFRGRGGGGGGGGGGFGG 45
Score = 75 (26.4 bits), Expect = 0.091, P = 0.087
Identities = 21/46 (45%), Positives = 23/46 (50%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRALEGLSGGGRGGMRG-RGRVWGGRGRGRGGY 144
+G G GG R G GGG GG G RGR GG GRGG+
Sbjct: 16 RGGGGGGGGGGGGFRGRGGGGGGGGGGFGGGRGRGGGGDRGGRGGF 61
Score = 70 (24.6 bits), Expect = 0.36, P = 0.30
Identities = 21/45 (46%), Positives = 22/45 (48%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRALEGLSG--GGRGGMRGRGRVWGGRGRGRGG 141
+G G GG G G GGRGG G GR GGRG G GG
Sbjct: 32 RGGGGGGGGGGFGGGRGRGGGGDRGGRGGFGG-GRGGGGRGGGGGG 76
Score = 69 (24.3 bits), Expect = 0.47, P = 0.37
Identities = 21/43 (48%), Positives = 23/43 (53%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGG 141
GRGA G + R G GGGRGG GRG GG G +GG
Sbjct: 77 GRGAFGGRGGGGGRGGGGRGGGGRGG-GGRG---GGAGGFKGG 115
Score = 69 (24.3 bits), Expect = 0.47, P = 0.37
Identities = 22/44 (50%), Positives = 23/44 (52%), Frame = +1
Query: 10 KGRGAGGLQNQLVNRALEGLSGGGRGGMRG-RGRVWGGRGRG-RGG 141
+GRG GG G G G GG RG RG GGRG G RGG
Sbjct: 30 RGRGGGGGGG---GGGFGGGRGRGGGGDRGGRGGFGGGRGGGGRGG 72
>gi|6321753 ref|NP_011829.1| Single-strand nucleic acid binding protein; Sbp1p
>gi|417810|sp|P10080|SSB1_YEAST SINGLE-STRANDED NUCLEIC
ACID-BINDING PROTEIN >gi|626761|pir||S48934 nucleic acid-binding
protein SSBR1 - yeast (Saccharomyces cerevisiae)
>gi|2289863|gb|AAB65046.1| (U11583) Single-strand nucleic acid
binding protein [Saccharomyces cerevisiae]
Length = 294
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | | 294
0 50 100 150 200 250
Plus Strand HSPs:
Score = 87 (30.6 bits), Expect = 0.019, P = 0.019
Identities = 21/44 (47%), Positives = 26/44 (59%), Frame = +1
Query: 16 RGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGGYH 147
RG GG + + R G GG RGG RGRG + GRG RGG++
Sbjct: 129 RGRGGFRGRGGFRG--GFRGGYRGGFRGRGN-FRGRGGARGGFN 169
Score = 69 (24.3 bits), Expect = 1.8, P = 0.83
Identities = 17/27 (62%), Positives = 18/27 (66%), Frame = +1
Query: 73 GG--GRGGMRGRGRVWGG-RGRGRGGY 144
GG GRGG RGRG GG RG RGG+
Sbjct: 126 GGFRGRGGFRGRGGFRGGFRGGYRGGF 152
>gi|4501877 ref|NP_001088.1| acrosin precursor; proacrosin
>gi|28326|emb|CAA68784.1| (Y00970) preproacrosin (AA -19 to 402)
[Homo sapiens]
Length = 421
Frame -1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 421
0 150 300
Minus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.020, P = 0.020
Identities = 24/54 (44%), Positives = 29/54 (53%), Frame = -1
Query: 173 TSHLQQSYR*YPPLPLP-RPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
++HL ++ PP PLP RPP +P P PP PPP P A S PP P P
Sbjct: 321 SAHLPWYFQ-PPPRPLPPRPPAAQPRP--PPSPPPPPPPPA---SPLPPPPPPPP 369
Score = 76 (26.8 bits), Expect = 0.50, P = 0.40
Identities = 16/28 (57%), Positives = 16/28 (57%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSS 57
P P P PP PLP PP PPP PSS
Sbjct: 348 PSPPPPPPPPASPLPPPPP-PPPPTPSS 374
Score = 73 (25.7 bits), Expect = 1.1, P = 0.66
Identities = 18/38 (47%), Positives = 20/38 (52%), Frame = -1
Query: 125 PRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
P PP TRP P+ PP +P SA L F PP P P
Sbjct: 302 PPPPTTRPPPIRPPF---SHPISAHLPWYFQPPPRPLP 336
Score = 70 (24.6 bits), Expect = 2.2, P = 0.89
Identities = 17/32 (53%), Positives = 17/32 (53%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLT 45
P P P PP PLP PP PPP PSS T
Sbjct: 348 PSPPPPPPPPASPLPPPPP-PPPPTPSST--T 376
>gi|2827473|emb|CAA15504.1| (AL008729) predicted protein dJ257A7.1 [Homo
sapiens]
Length = 118
Frame -1 hits (HSPs): ____ _________
Frame -2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 118
0 50 100
Minus Strand HSPs:
Score = 50 (17.6 bits), Expect = 0.021, Sum P(2) = 0.021
Identities = 10/23 (43%), Positives = 16/23 (69%), Frame = -2
Query: 79 HHQTILPA-LY*QVDFANH-QHL 17
HH T+LP+ + Q+ + +H QHL
Sbjct: 95 HHHTVLPSQIQHQLQYGSHGQHL 117
Score = 43 (15.1 bits), Expect = 0.021, Sum P(2) = 0.021
Identities = 10/22 (45%), Positives = 12/22 (54%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPP 75
P P+ P P+ L PPLPP
Sbjct: 44 PGAPVKLP--CLPVKLSPPLPP 63
Score = 35 (12.3 bits), Expect = 0.14, Sum P(2) = 0.13
Identities = 5/8 (62%), Positives = 7/8 (87%), Frame = -1
Query: 137 PLPLPRPP 114
P+P+PR P
Sbjct: 20 PVPMPRDP 27
>gi|226743|prf||1604369A sulfated surface glycoprotein SSG185 [Volvox carteri]
Length = 453
Frame -1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | || 453
0 150 300 450
Minus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.022, P = 0.022
Identities = 20/43 (46%), Positives = 21/43 (48%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP P P PP PPP P S KPP+P P
Sbjct: 266 PPPPPPPPPPPSPPPPPPPPPPPPPPPPPPSPSPPRKPPSPSP 308
Score = 85 (29.9 bits), Expect = 0.060, P = 0.058
Identities = 15/32 (46%), Positives = 21/32 (65%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLT 45
PP P P PP+ P P PP+PPP +PS+ ++
Sbjct: 292 PPPPSPSPPRKPPSPS-PPVPPPPSPSAVTIS 322
Score = 78 (27.5 bits), Expect = 0.34, P = 0.29
Identities = 18/43 (41%), Positives = 19/43 (44%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP P P PP PPP +P PP P P
Sbjct: 253 PPPPSPSPPPPPPPPPPPPPPPPPSPPPPPPPPPPPPPPPPPP 295
Score = 74 (26.0 bits), Expect = 0.91, P = 0.60
Identities = 18/43 (41%), Positives = 19/43 (44%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP P P PP PPP +P PP P P
Sbjct: 253 PPPPSPSPPPPPPPPPPPPPPPPPSPPPPPPP-----PPPPPP 290
Score = 73 (25.7 bits), Expect = 1.2, P = 0.69
Identities = 18/43 (41%), Positives = 19/43 (44%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP P P PP PPP +P PP P P
Sbjct: 253 PPPPSPSPPPPPPPPPPPPPPPPPSPP----------PPPPPP 285
Score = 73 (25.7 bits), Expect = 1.2, P = 0.69
Identities = 20/46 (43%), Positives = 21/46 (45%), Frame = -1
Query: 140 PPLPLP----RPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P RPP P P PP PPP +PS PP P P
Sbjct: 230 PPSPQPTASSRPPSPPPSPR-PPSPPPPSPSPPPPPPPPPPPPPPPP 275
Score = 70 (24.6 bits), Expect = 2.5, P = 0.91
Identities = 20/43 (46%), Positives = 21/43 (48%), Frame = -1
Query: 140 PPLPLP----RPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P RPP P P PP PPP +PS PP P P
Sbjct: 230 PPSPQPTASSRPPSPPPSPR-PPSPPPPSPSPP--------PPPPPP 267
>gi|7293333|gb|AAF48713.1| (AE003504) anon-Pen15EF gene product [Drosophila
melanogaster]
Length = 173
Frame 1 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | 173
0 50 100 150
Plus Strand HSPs:
Score = 82 (28.9 bits), Expect = 0.022, P = 0.022
Identities = 22/46 (47%), Positives = 26/46 (56%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGR---GRGRGGY 144
G GAGG+ QL+ L GL GG GG+ G GG+ G G GGY
Sbjct: 37 GGGAGGI-GQLLQSKLGGLGGGLGGGLGGLSGGLGGKLGGGGGGGGY 82
Score = 66 (23.2 bits), Expect = 1.5, P = 0.78
Identities = 20/46 (43%), Positives = 21/46 (45%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGG-RGGMRGRGRVWGGRG-RGRGGY 144
G G GGL L + G GGG GG G GG G G GGY
Sbjct: 59 GGGLGGLSGGLGGKLGGGGGGGGYSGGYSNGGGYSGGGGYSGGGGY 104
Score = 64 (22.5 bits), Expect = 2.6, P = 0.92
Identities = 21/44 (47%), Positives = 22/44 (50%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGGY 144
G G GGL L + L G GGG GG G G GG G GGY
Sbjct: 59 GGGLGGLSGGLGGK-LGG--GGGGGGYSG-GYSNGGGYSGGGGY 98
Score = 59 (20.8 bits), Expect = 9.4, P = 1.0
Identities = 21/52 (40%), Positives = 22/52 (42%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGGR-------GGMRGRGRVWGGRG-RGRGGY 144
G G GGL L + G GGG GG G G GG G G GGY
Sbjct: 59 GGGLGGLSGGLGGKLGGGGGGGGYSGGYSNGGGYSGGGGYSGGGGYSGGGGY 110
>gi|4218011|gb|AAD12219.1| (AC006135) putative protein kinase [Arabidopsis
thaliana]
Length = 633
Frame -1 hits (HSPs): __
Frame -3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | 633
0 150 300 450 600
Minus Strand HSPs:
Score = 72 (25.3 bits), Expect = 0.024, Sum P(2) = 0.023
Identities = 13/30 (43%), Positives = 22/30 (73%), Frame = -3
Query: 168 TSATKLPMIPSSSSSTTTPDPASAPHTPSP 79
T++T P PS+++STT+ PA +P +P+P
Sbjct: 11 TNSTSSPSPPSNTNSTTSSPPAPSPPSPTP 40
Score = 40 (14.1 bits), Expect = 0.024, Sum P(2) = 0.023
Identities = 10/24 (41%), Positives = 13/24 (54%), Frame = -1
Query: 89 PPLPPPDNPSSALLTS*FCKPPAP 18
PP PPP P+S +S + P P
Sbjct: 232 PP-PPPRMPTSGEDSSMYSGPSRP 254
>gi|775215|gb|AAA66373.1| (U23857) EBNA1 [Herpesvirus papio]
Length = 476
Frame 1 hits (HSPs): _____ _______
__________________________________________________
Database sequence: | | | | | 476
0 150 300 450
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.024, P = 0.023
Identities = 24/44 (54%), Positives = 24/44 (54%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWG----GRGRGRGG 141
G GAGG G GG GG RGRGR G GRGRGRGG
Sbjct: 126 GAGAGGSG---AGAGGSGAGAGGSGGSRGRGRGRGTGSRGRGRGRGG 169
Score = 84 (29.6 bits), Expect = 0.082, P = 0.079
Identities = 23/44 (52%), Positives = 27/44 (61%), Frame = +1
Query: 10 KGRGAG-GLQNQLVNRALEGLSGGGRGGMRGRGRVWG-GRGRGRGG 141
+GRG G G ++ R GGG G RGRG+ G GRGRGRGG
Sbjct: 150 RGRGRGRGTGSRGRGRG----RGGGSGSSRGRGKHRGRGRGRGRGG 191
Score = 75 (26.4 bits), Expect = 0.76, P = 0.53
Identities = 26/56 (46%), Positives = 26/56 (46%), Frame = +1
Query: 13 GRGAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWG----GRGRGRGG---------YHR 150
G GAGG G GG GG RGRGR G GRGRGRGG HR
Sbjct: 126 GAGAGGSG---AGAGGSGAGAGGSGGSRGRGRGRGTGSRGRGRGRGGGSGSSRGRGKHR 181
Score = 70 (24.6 bits), Expect = 2.6, P = 0.93
Identities = 21/39 (53%), Positives = 22/39 (56%), Frame = +1
Query: 28 GLQNQLVNRALEGLSGGGRG-GMRGRGRVWG-GRGRGRGG 141
G N L + G GG RG G GRGR G GRGRG GG
Sbjct: 7 GPNNGLGEKGDTG-GGGTRGRGGHGRGRGRGRGRGRGHGG 45
>gi|212412|gb|AAA48983.1| (M21791) nucleolin/C23 [Gallus gallus]
Length = 288
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | | 288
0 50 100 150 200 250
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 0.024, P = 0.023
Identities = 24/44 (54%), Positives = 25/44 (56%), Frame = +1
Query: 16 RGAGGLQNQLVNRALEGLSGGGRGGMRGRG--RVWGGRGRG-RGG 141
RG GG R G GGGRGG GRG R +GGRG G RGG
Sbjct: 228 RG-GGFGGGFGGRGGRGGRGGGRGGFGGRGGGRGFGGRGGGFRGG 271
Score = 83 (29.2 bits), Expect = 0.050, P = 0.049
Identities = 25/52 (48%), Positives = 27/52 (51%), Frame = +1
Query: 16 RGAGGLQNQLVNRALEGLSGGGRGGMRGRG--RVWGGRG------RGRGGYHR 150
RG GG R G GGGRGG GRG R +GGRG RG GG H+
Sbjct: 228 RG-GGFGGGFGGRGGRGGRGGGRGGFGGRGGGRGFGGRGGGFRGGRGGGGDHK 279
Score = 67 (23.6 bits), Expect = 2.8, P = 0.94
Identities = 18/32 (56%), Positives = 19/32 (59%), Frame = +1
Query: 64 GLSG-GGRGGMRGRGRVWGG--RGRGRGGYHR 150
G G GGRGG RG G GG GRG GG H+
Sbjct: 248 GRGGFGGRGGGRGFGGRGGGFRGGRGGGGDHK 279
>gi|134920|sp|P21997|SSGP_VOLCA SULFATED SURFACE GLYCOPROTEIN 185 (SSG 185)
>gi|99441|pir||A33647 sulfated surface glycoprotein 185 - Volvox
carteri >gi|1405821|emb|CAA35953.1| (X51616) SULFATED SURFACE
GLYCOPROTEIN 185 [Volvox carteri]
Length = 485
Frame -1 hits (HSPs): __________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | 485
0 150 300 450
__________________
Annotated Domains:
Entrez Domain: PRO-RICH. 228..340
Entrez Domain: POLY-PRO. 260..295
PRODOM PD095929: SSGP_VOLCA 1..37
PRODOM PD011063: O22458(2) SSGP(2) P93797(1) 39..116
PRODOM PD095934: SSGP_VOLCA 118..230
PRODOM PD000540: H1(18) O76786(11) TONB(10) 232..313
PRODOM PD011063: O22458(2) SSGP(2) P93797(1) 326..467
__________________
Minus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.024, P = 0.024
Identities = 20/43 (46%), Positives = 21/43 (48%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP P P PP PPP P S KPP+P P
Sbjct: 266 PPPPPPPPPPPSPPPPPPPPPPPPPPPPPPSPSPPRKPPSPSP 308
Score = 85 (29.9 bits), Expect = 0.065, P = 0.063
Identities = 16/30 (53%), Positives = 19/30 (63%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSAL 51
PP P P PP+ P P PP+PPP +P S L
Sbjct: 292 PPPPSPSPPRKPPSPS-PPVPPPPSPPSVL 320
Score = 78 (27.5 bits), Expect = 0.37, P = 0.31
Identities = 18/43 (41%), Positives = 19/43 (44%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP P P PP PPP +P PP P P
Sbjct: 253 PPPPSPSPPPPPPPPPPPPPPPPPSPPPPPPPPPPPPPPPPPP 295
Score = 74 (26.0 bits), Expect = 1.0, P = 0.63
Identities = 18/43 (41%), Positives = 19/43 (44%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP P P PP PPP +P PP P P
Sbjct: 253 PPPPSPSPPPPPPPPPPPPPPPPPSPPPPPPP-----PPPPPP 290
Score = 73 (25.7 bits), Expect = 1.3, P = 0.72
Identities = 18/43 (41%), Positives = 19/43 (44%), Frame = -1
Query: 140 PPLPLPRPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P PP P P PP PPP +P PP P P
Sbjct: 253 PPPPSPSPPPPPPPPPPPPPPPPPSPP----------PPPPPP 285
Score = 73 (25.7 bits), Expect = 1.3, P = 0.72
Identities = 20/46 (43%), Positives = 21/46 (45%), Frame = -1
Query: 140 PPLPLP----RPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P RPP P P PP PPP +PS PP P P
Sbjct: 230 PPSPQPTASSRPPSPPPSPR-PPSPPPPSPSPPPPPPPPPPPPPPPP 275
Score = 70 (24.6 bits), Expect = 2.7, P = 0.93
Identities = 20/43 (46%), Positives = 21/43 (48%), Frame = -1
Query: 140 PPLPLP----RPPQTRPLPLIPPLPPPDNPSSALLTS*FCKPPAPRP 12
PP P P RPP P P PP PPP +PS PP P P
Sbjct: 230 PPSPQPTASSRPPSPPPSPR-PPSPPPPSPSPP--------PPPPPP 267
>gi|1362083|pir||S56703 glycine-rich cell wall protein precursor - carrot
>gi|479021|dbj|BAA06240.1| (D29974) glycine-rich cell wall protein
precursor [Daucus carota]
Length = 162
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | 162
0 50 100 150
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 0.024, P = 0.024
Identities = 20/41 (48%), Positives = 21/41 (51%), Frame = +1
Query: 19 GAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGG 141
GA GL L GL G G GG+ G G V GG G G GG
Sbjct: 112 GASGLGGLGGASGLGGLGGAGAGGLGGLGGVGGGVGGGAGG 152
Score = 68 (23.9 bits), Expect = 0.77, P = 0.54
Identities = 20/44 (45%), Positives = 21/44 (47%), Frame = +1
Query: 19 GAGGLQNQLVNRALEGLSGGGRGGMRGRGRVWGGRGRGRGG--- 141
GA GL L GL G G GG+ G G V GG G G GG
Sbjct: 112 GASGLGGLGGASGLGGLGGAGAGGLGGLGGVGGGVGGGAGGAGG 155
WARNING: HSPs involving 1869 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.94
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.337 0.142 0.593
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.335 0.150 0.455
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.330 0.151 0.513
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.340 0.154 0.575
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.343 0.155 0.552
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.318 0.126 0.350
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 66 66 10. 57 3 12 22 0.11 30
27 0.096 31
+2 0 66 65 10. 57 3 12 22 0.11 30
27 0.092 31
+1 0 66 65 10. 57 3 12 22 0.11 30
27 0.092 31
-1 0 66 66 10. 57 3 12 22 0.11 30
27 0.096 31
-2 0 66 65 10. 57 3 12 22 0.11 30
27 0.092 31
-3 0 66 65 10. 57 3 12 22 0.11 30
27 0.092 31
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 8:50 PM CDT May 27, 2000
Format: BLAST
# of letters in database: 158,518,215
# of sequences in database: 505,245
# of database sequences satisfying E: 1919
No. of states in DFA: 572 (56 KB)
Total size of DFA: 120 KB (128 KB)
Time to generate neighborhood: 0.00u 0.02s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 153.69u 1.23s 154.92t Elapsed: 00:00:50
Total cpu time: 153.78u 1.33s 155.11t Elapsed: 00:00:51
Start: Wed Feb 14 21:59:57 2001 End: Wed Feb 14 22:00:48 2001
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000