BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= FN0207
(442 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19703552|ref|NP_603114.1| (R)-2-hydroxyglutaryl-CoA dehy... 914 0.0
gi|34763337|ref|ZP_00144291.1| (R)-2-hydroxyglutaryl-CoA de... 911 0.0
gi|148322792|gb|EDK88042.1| (R)-2-hydroxyglutaryl-CoA dehyd... 902 0.0
gi|123112|sp|P11569|HGDA_ACIFE (R)-2-hydroxyglutaryl-CoA de... 419 e-115
gi|16417589|gb|AAL18810.1|AF420489_4 R-phenyllactate dehydr... 418 e-115
gi|148381233|ref|YP_001255774.1| R-phenyllactate dehydratas... 418 e-115
gi|153938498|ref|YP_001392635.1| R-phenyllactate dehydratas... 417 e-115
gi|4883832|gb|AAD31676.1| (R)-2-hydroxyglutaryl-CoA dehydra... 414 e-114
gi|145956308|ref|ZP_01805305.1| hypothetical protein CdifQ_... 353 2e-95
gi|126697966|ref|YP_001086863.1| subunit of oxygen-sensitiv... 352 2e-95
gi|153938029|ref|YP_001391492.1| putative R-2-hydroxyglutar... 348 3e-94
gi|148380152|ref|YP_001254693.1| subunit of oxygen-sensitiv... 347 1e-93
gi|118444701|ref|YP_878442.1| R-phenyllactate dehydratase m... 278 4e-73
gi|11499540|ref|NP_070782.1| 2-hydroxyglutaryl-CoA dehydrat... 198 6e-49
gi|109645397|ref|ZP_01369317.1| 2-hydroxyglutaryl-CoA dehyd... 187 1e-45
gi|89895061|ref|YP_518548.1| hypothetical protein DSY2315 [... 185 6e-45
gi|121543456|ref|ZP_01675123.1| (R)-2-hydroxyglutaryl-CoA d... 184 8e-45
gi|78043965|ref|YP_359698.1| (R)-2-hydroxyglutaryl-CoA dehy... 179 5e-43
gi|121542310|ref|ZP_01674043.1| 2-hydroxyglutaryl-CoA dehyd... 162 4e-38
gi|110598990|ref|ZP_01387232.1| 2-hydroxyglutaryl-CoA dehyd... 140 1e-31
gi|62484827|emb|CAI78844.1| 2-hydroxyglutaryl-coa dehydrata... 139 4e-31
gi|145619329|ref|ZP_01775380.1| 2-hydroxyglutaryl-CoA dehyd... 134 9e-30
gi|90422542|ref|YP_530912.1| Benzoyl-CoA reductase, subunit... 123 3e-26
gi|115522634|ref|YP_779545.1| benzoyl-CoA reductase, subuni... 121 1e-25
gi|62484850|emb|CAI78867.1| benzoyl-CoA reductase, beta sub... 118 6e-25
gi|91976016|ref|YP_568675.1| Benzoyl-CoA reductase, subunit... 118 8e-25
gi|39933735|ref|NP_946011.1| benzoyl-CoA reductase subunit ... 112 6e-23
gi|3724169|emb|CAA12248.1| B-subunit of benzoyl-CoA reducta... 108 7e-22
gi|56478437|ref|YP_160026.1| benzoyl CoA reductase subunit ... 103 3e-20
gi|46202064|ref|ZP_00208366.1| COG1775: Benzoyl-CoA reducta... 102 4e-20
gi|83311239|ref|YP_421503.1| B-subunit of benzoyl-CoA reduc... 102 4e-20
gi|56475814|ref|YP_157403.1| benzoyl CoA reductase subunit ... 102 4e-20
gi|45649068|gb|AAQ08807.1| BzdO [Azoarcus sp. CIB] 102 5e-20
gi|18369656|emb|CAD21629.1| benzoyl CoA reductase subunit [... 99 5e-19
gi|51850068|dbj|BAD42372.1| putative B-subunit of benzoyl-C... 97 2e-18
gi|91200822|emb|CAJ73876.1| hypothetical protein [Candidatu... 83 4e-14
gi|118743517|ref|ZP_01591520.1| 2-hydroxyglutaryl-CoA dehyd... 82 6e-14
gi|89210740|ref|ZP_01189126.1| 2-hydroxyglutaryl-CoA dehydr... 82 7e-14
gi|153852899|ref|ZP_01994336.1| hypothetical protein DORLON... 72 1e-10
gi|153813155|ref|ZP_01965823.1| hypothetical protein RUMOBE... 69 6e-10
gi|76796295|ref|ZP_00778660.1| 2-hydroxyglutaryl-CoA dehydr... 69 9e-10
gi|78043095|ref|YP_360029.1| putative (R)-2-hydroxyglutaryl... 67 3e-09
gi|114843950|ref|ZP_01454408.1| 2-hydroxyglutaryl-CoA dehyd... 66 4e-09
gi|20807575|ref|NP_622746.1| 2-hydroxyglutaryl-CoA dehydrat... 63 4e-08
gi|39997614|ref|NP_953565.1| (R)-2-hydroxyglutaryl-CoA dehy... 62 7e-08
gi|114565967|ref|YP_753121.1| (R)-2-hydroxyglutaryl-CoA deh... 55 7e-06
>gi|19703552|ref|NP_603114.1| (R)-2-hydroxyglutaryl-CoA dehydratase alpha-subunit [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|19713648|gb|AAL94413.1| (R)-2-hydroxyglutaryl-CoA dehydratase alpha-subunit [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 442
Score = 914 bits (2361), Expect = 0.0, Method: Composition-based stats.
Identities = 442/442 (100%), Positives = 442/442 (100%)
Query: 1 MAGKMEKLPNKKPRPIEGHKPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAK 60
MAGKMEKLPNKKPRPIEGHKPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAK
Sbjct: 1 MAGKMEKLPNKKPRPIEGHKPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAK 60
Query: 61 AFDLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMP 120
AFDLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMP
Sbjct: 61 AFDLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMP 120
Query: 121 QPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIK 180
QPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIK
Sbjct: 121 QPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIK 180
Query: 181 QLEELTGKKFDEKKFEDACARANRTAAAWLKSCKYMGYKPSPLSGFDLFNHMADIVAARC 240
QLEELTGKKFDEKKFEDACARANRTAAAWLKSCKYMGYKPSPLSGFDLFNHMADIVAARC
Sbjct: 181 QLEELTGKKFDEKKFEDACARANRTAAAWLKSCKYMGYKPSPLSGFDLFNHMADIVAARC 240
Query: 241 DEEAAMGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVT 300
DEEAAMGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVT
Sbjct: 241 DEEAAMGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVT 300
Query: 301 AVVYAPAFGFRYNNVREMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKP 360
AVVYAPAFGFRYNNVREMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKP
Sbjct: 301 AVVYAPAFGFRYNNVREMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKP 360
Query: 361 WSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEKLAKG 420
WSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEKLAKG
Sbjct: 361 WSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEKLAKG 420
Query: 421 EEVYTNFENTKETDWSKETIKH 442
EEVYTNFENTKETDWSKETIKH
Sbjct: 421 EEVYTNFENTKETDWSKETIKH 442
>gi|34763337|ref|ZP_00144291.1| (R)-2-hydroxyglutaryl-CoA dehydratase alpha-subunit [Fusobacterium
nucleatum subsp. vincentii ATCC 49256]
gi|27886988|gb|EAA24106.1| (R)-2-hydroxyglutaryl-CoA dehydratase alpha-subunit [Fusobacterium
nucleatum subsp. vincentii ATCC 49256]
Length = 442
Score = 911 bits (2355), Expect = 0.0, Method: Composition-based stats.
Identities = 440/442 (99%), Positives = 442/442 (100%)
Query: 1 MAGKMEKLPNKKPRPIEGHKPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAK 60
MAGKMEKLPNKKPRPIEGHKPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAK
Sbjct: 1 MAGKMEKLPNKKPRPIEGHKPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAK 60
Query: 61 AFDLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMP 120
AFDLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTD+RRMP
Sbjct: 61 AFDLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDSRRMP 120
Query: 121 QPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIK 180
QPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIK
Sbjct: 121 QPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIK 180
Query: 181 QLEELTGKKFDEKKFEDACARANRTAAAWLKSCKYMGYKPSPLSGFDLFNHMADIVAARC 240
QLEELTGKKFDEKKFEDACARANRTAAAWLKSCKYMGYKPSPLSGFDLFNHMADIVAARC
Sbjct: 181 QLEELTGKKFDEKKFEDACARANRTAAAWLKSCKYMGYKPSPLSGFDLFNHMADIVAARC 240
Query: 241 DEEAAMGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVT 300
DEEAA+GFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVT
Sbjct: 241 DEEAAIGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVT 300
Query: 301 AVVYAPAFGFRYNNVREMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKP 360
AVVYAPAFGFRYNNVREMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKP
Sbjct: 301 AVVYAPAFGFRYNNVREMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKP 360
Query: 361 WSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEKLAKG 420
WSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEKLAKG
Sbjct: 361 WSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEKLAKG 420
Query: 421 EEVYTNFENTKETDWSKETIKH 442
EEVYTNFENTKETDWSKETIKH
Sbjct: 421 EEVYTNFENTKETDWSKETIKH 442
>gi|148322792|gb|EDK88042.1| (R)-2-hydroxyglutaryl-CoA dehydratase alpha subunit [Fusobacterium
nucleatum subsp. polymorphum ATCC 10953]
Length = 442
Score = 902 bits (2331), Expect = 0.0, Method: Composition-based stats.
Identities = 434/442 (98%), Positives = 440/442 (99%)
Query: 1 MAGKMEKLPNKKPRPIEGHKPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAK 60
MAGKMEKLPNKKPRPIEGHKPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAK
Sbjct: 1 MAGKMEKLPNKKPRPIEGHKPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAK 60
Query: 61 AFDLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMP 120
AFDLNVVYPENHAAS AAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMP
Sbjct: 61 AFDLNVVYPENHAASAAAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMP 120
Query: 121 QPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIK 180
QPDFLLCCNNICNMMTKWYENIAR+HNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIK
Sbjct: 121 QPDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIK 180
Query: 181 QLEELTGKKFDEKKFEDACARANRTAAAWLKSCKYMGYKPSPLSGFDLFNHMADIVAARC 240
QLEELTGKKFDEKKFEDACARANRTAAAWLK+CKYMGYKPSPLSGFDLFNHMADIVAARC
Sbjct: 181 QLEELTGKKFDEKKFEDACARANRTAAAWLKACKYMGYKPSPLSGFDLFNHMADIVAARC 240
Query: 241 DEEAAMGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVT 300
DEEAA+GFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVT
Sbjct: 241 DEEAAIGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVT 300
Query: 301 AVVYAPAFGFRYNNVREMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKP 360
AVVYAPAFGFRY+N+REMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKP
Sbjct: 301 AVVYAPAFGFRYHNIREMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKP 360
Query: 361 WSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEKLAKG 420
WSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEKLAKG
Sbjct: 361 WSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEKLAKG 420
Query: 421 EEVYTNFENTKETDWSKETIKH 442
EEVYTNFENTKETDWSK T+KH
Sbjct: 421 EEVYTNFENTKETDWSKPTLKH 442
>gi|123112|sp|P11569|HGDA_ACIFE (R)-2-hydroxyglutaryl-CoA dehydratase subunit alpha
gi|38800|emb|CAA32465.1| hgdA protein precursor [Acidaminococcus fermentans]
Length = 477
Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats.
Identities = 193/298 (64%), Positives = 229/298 (76%)
Query: 119 MPQPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHA 178
MP PDF+LCCNNICN MTKWYE+IAR HNIPLIMID+P++ E V Y+ Q D A
Sbjct: 178 MPMPDFVLCCNNICNCMTKWYEDIARRHNIPLIMIDVPYNEFDHVNEANVKYIRSQLDTA 237
Query: 179 IKQLEELTGKKFDEKKFEDACARANRTAAAWLKSCKYMGYKPSPLSGFDLFNHMADIVAA 238
I+Q+EE+TGKKFDE KFE C ANRTA AWLK C Y+ YKP+P +GFDLFNHMAD+V A
Sbjct: 238 IRQMEEITGKKFDEDKFEQCCQNANRTAKAWLKVCDYLQYKPAPFNGFDLFNHMADVVTA 297
Query: 239 RCDEEAAMGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVN 298
R EAA FELLA E EQ +KEGT+T + E+HRI+FEGIPCWP L LF+PLK NG+N
Sbjct: 298 RGRVEAAEAFELLAKELEQHVKEGTTTAPFKEQHRIMFEGIPCWPKLPNLFKPLKANGLN 357
Query: 299 VTAVVYAPAFGFRYNNVREMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSC 358
+T VVYAPAFGF YNN+ E+ AYCKAP SV IE GV WRE + ++N + G LV+YNRSC
Sbjct: 358 ITGVVYAPAFGFVYNNLDELVKAYCKAPNSVSIEQGVAWREGLIRDNKVDGVLVHYNRSC 417
Query: 359 KPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEK 416
KPWSG MPE++RR+ +D+GIP FDGDQAD RNF+ QY TRVQGLVE M+ E+K
Sbjct: 418 KPWSGYMPEMQRRFTKDMGIPTAGFDGDQADPRNFNAAQYETRVQGLVEAMEANDEKK 475
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 63/91 (69%), Positives = 71/91 (78%)
Query: 21 PAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASTAAKK 80
P LR VV+KVY E K+RGE VGWSSSKFP ELA++F L+V YPEN AA AA +
Sbjct: 7 PGVQALRDVVEKVYRELREPKERGEKVGWSSSKFPCELAESFRLHVGYPENQAAGIAANR 66
Query: 81 DGLRLCQAAEDMGYDNDICGYARISLAYAAG 111
DG +CQAAED+GYDNDICGYARISLAYAAG
Sbjct: 67 DGEVMCQAAEDIGYDNDICGYARISLAYAAG 97
>gi|16417589|gb|AAL18810.1|AF420489_4 R-phenyllactate dehydratase medium subunit [Clostridium sporogenes]
Length = 407
Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats.
Identities = 203/395 (51%), Positives = 270/395 (68%)
Query: 20 KPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASTAAK 79
K A LR + K Y A EAK+RGE VGW +S FP E+A + VVYPENHAA+ AA+
Sbjct: 11 KKAKHYLREITAKHYKEALEAKERGEKVGWCASNFPQEIATTLGVKVVYPENHAAAVAAR 70
Query: 80 KDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMPQPDFLLCCNNICNMMTKWY 139
+G +C+ AE MG+ ND+CGYAR++LA ++ + +P PDF+LCCNNICN M KWY
Sbjct: 71 GNGQNMCEHAEAMGFSNDVCGYARVNLAVMDIGHSEDQPIPMPDFVLCCNNICNQMIKWY 130
Query: 140 ENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDAC 199
E+IA+ +IP+I+IDIP++ ++++ Y+ QFD AIKQLEE+TGKK+DE KFE+
Sbjct: 131 EHIAKTLDIPMILIDIPYNTENTVSQDRIKYIRAQFDDAIKQLEEITGKKWDENKFEEVM 190
Query: 200 ARANRTAAAWLKSCKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAMGFELLADEFEQSI 259
+ +A WL++ Y YKPSP SGFDLFNHMA V AR +EAA F++LADE+E+++
Sbjct: 191 KISQESAKQWLRAASYAKYKPSPFSGFDLFNHMAVAVCARGTQEAADAFKMLADEYEENV 250
Query: 260 KEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYNNVREMA 319
K G ST+ E+ RILFEGI CWP L+ L + G+NVTA VYA AFG Y N+ E+
Sbjct: 251 KTGKSTYRGEEKQRILFEGIACWPYLRHKLTKLSEYGMNVTATVYAEAFGVIYENMDELM 310
Query: 320 AAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIP 379
AAY K P S+ E ++ R GA+++ NRSCK WSG + E+ RR +++ GIP
Sbjct: 311 AAYNKVPNSISFENALKMRLNAVTSTNTEGAVIHINRSCKLWSGFLYELARRLEKETGIP 370
Query: 380 VVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKE 414
VV FDGDQAD RNFS QY+TR+QGL E+M +KE
Sbjct: 371 VVSFDGDQADPRNFSEAQYDTRIQGLNEVMVAKKE 405
>gi|148381233|ref|YP_001255774.1| R-phenyllactate dehydratase medium subunit [Clostridium botulinum A
str. ATCC 3502]
gi|153931140|ref|YP_001385608.1| R-phenyllactate dehydratase, B subunit [Clostridium botulinum A
str. ATCC 19397]
gi|153936470|ref|YP_001389014.1| R-phenyllactate dehydratase, B subunit [Clostridium botulinum A
str. Hall]
gi|148290717|emb|CAL84848.1| R-phenyllactate dehydratase medium subunit [Clostridium botulinum A
str. ATCC 3502]
gi|152927184|gb|ABS32684.1| R-phenyllactate dehydratase, B subunit [Clostridium botulinum A
str. ATCC 19397]
gi|152932384|gb|ABS37883.1| R-phenyllactate dehydratase, B subunit [Clostridium botulinum A
str. Hall]
Length = 407
Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats.
Identities = 207/396 (52%), Positives = 273/396 (68%), Gaps = 2/396 (0%)
Query: 20 KPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASTAAK 79
K A LR + K Y A EAK+RGE VGW +S FP E+A + VVYPENHAA+ AA+
Sbjct: 11 KKAKHYLREITAKHYKEALEAKERGEKVGWCASNFPQEIATTLGIKVVYPENHAAAVAAR 70
Query: 80 KDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMPQPDFLLCCNNICNMMTKWY 139
+G +C+ AE MG+ ND+CGYAR++LA ++ + +P PDF+LCCNNICN M KWY
Sbjct: 71 GNGQNMCEHAEAMGFSNDVCGYARVNLAVMDIGHSEDQPIPMPDFVLCCNNICNQMIKWY 130
Query: 140 ENIARIHNIPLIMIDIPFSNTVDT-PEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDA 198
E+IA+ +IP+I+IDIP+ NT DT ++++ Y+ QFD+AIKQLEE+TGKK+DE KFE+
Sbjct: 131 EHIAKTLDIPMILIDIPY-NTEDTISQDRIKYIRAQFDNAIKQLEEITGKKWDEDKFEEV 189
Query: 199 CARANRTAAAWLKSCKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAMGFELLADEFEQS 258
+ +A WL++ Y YKPSP SGFDLFNHMA V AR +EAA F++LADE+E++
Sbjct: 190 MKISQESAKQWLRAASYAKYKPSPFSGFDLFNHMAVAVCARGTQEAADAFKMLADEYEEN 249
Query: 259 IKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYNNVREM 318
+K G ST+ E+ RILFEGI CWP L+ L + G+NVTA VYA AFG Y N E+
Sbjct: 250 VKTGKSTYRGEEKQRILFEGIACWPYLRHKLTKLSEYGMNVTATVYAEAFGVIYENTDEL 309
Query: 319 AAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGI 378
AAY K P S+ E ++ R GA+++ NRSCK WSG + E+ RR +++ GI
Sbjct: 310 MAAYNKVPNSISFENALKMRLNAVTSTNTEGAVIHINRSCKLWSGFLYELGRRLEKETGI 369
Query: 379 PVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKE 414
PVV FDGDQAD RNFS QY+TR+QGL E+M +KE
Sbjct: 370 PVVSFDGDQADPRNFSEAQYDTRIQGLNEVMVAKKE 405
>gi|153938498|ref|YP_001392635.1| R-phenyllactate dehydratase, B subunit [Clostridium botulinum F
str. Langeland]
gi|152934394|gb|ABS39892.1| R-phenyllactate dehydratase, B subunit [Clostridium botulinum F
str. Langeland]
Length = 407
Score = 417 bits (1073), Expect = e-115, Method: Composition-based stats.
Identities = 207/396 (52%), Positives = 273/396 (68%), Gaps = 2/396 (0%)
Query: 20 KPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASTAAK 79
K A LR + K Y A EAK+RGE VGW +S FP E+A + VVYPENHAA+ AA+
Sbjct: 11 KKAKHYLREITAKHYKEALEAKERGEKVGWCASNFPQEIATTLGVKVVYPENHAAAVAAR 70
Query: 80 KDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMPQPDFLLCCNNICNMMTKWY 139
+G +C+ AE MG+ ND+CGYAR++LA ++ + +P PDF+LCCNNICN M KWY
Sbjct: 71 GNGQNMCEHAEAMGFSNDVCGYARVNLAVMDIGHSEDQPIPMPDFVLCCNNICNQMIKWY 130
Query: 140 ENIARIHNIPLIMIDIPFSNTVDT-PEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDA 198
E+IA+ +IP+I+IDIP+ NT DT ++++ Y+ QFD+AIKQLEE+TGKK+DE KFE+
Sbjct: 131 EHIAKTLDIPMILIDIPY-NTEDTISQDRIKYIRAQFDNAIKQLEEITGKKWDEDKFEEV 189
Query: 199 CARANRTAAAWLKSCKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAMGFELLADEFEQS 258
+ +A WL++ Y YKPSP SGFDLFNHMA V AR +EAA F++LADE+E++
Sbjct: 190 MKISQESAKQWLRAASYAKYKPSPFSGFDLFNHMAVAVCARGTQEAADAFKMLADEYEEN 249
Query: 259 IKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYNNVREM 318
+K G ST+ E+ RILFEGI CWP L+ L + G+NVTA VYA AFG Y N E+
Sbjct: 250 VKTGKSTYRGEEKQRILFEGIACWPYLRHKLTKLSEYGMNVTATVYAEAFGVIYENTDEL 309
Query: 319 AAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGI 378
AAY K P S+ E ++ R GA+++ NRSCK WSG + E+ RR +++ GI
Sbjct: 310 MAAYNKVPNSISFENALKMRLNAVTSTNTEGAVIHINRSCKLWSGFLYELGRRLEKETGI 369
Query: 379 PVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKE 414
PVV FDGDQAD RNFS QY+TR+QGL E+M +KE
Sbjct: 370 PVVSFDGDQADPRNFSEAQYDTRIQGLNEVMVAKKE 405
>gi|4883832|gb|AAD31676.1| (R)-2-hydroxyglutaryl-CoA dehydratase component D [Clostridium
symbiosum]
Length = 480
Score = 414 bits (1063), Expect = e-114, Method: Composition-based stats.
Identities = 207/310 (66%), Positives = 249/310 (80%)
Query: 110 AGEPTDARRMPQPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEKVD 169
A P R+PQPDF+LCCNNICN MTKWYENIAR+ N+PLIMIDIP++NTV+ ++ V
Sbjct: 171 AISPIRQMRIPQPDFVLCCNNICNCMTKWYENIARMCNVPLIMIDIPYNNTVEVHDDNVK 230
Query: 170 YLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLKSCKYMGYKPSPLSGFDLF 229
Y+ QFD AIKQLEELTGKKFDEKKFE AC+ ANRTA AWLK C Y+ YKP+P SGFDLF
Sbjct: 231 YVRAQFDKAIKQLEELTGKKFDEKKFEKACSNANRTAQAWLKVCDYLQYKPAPYSGFDLF 290
Query: 230 NHMADIVAARCDEEAAMGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLF 289
NHMAD+V AR EAA FELLAD+ E+++K+G +T +PE++R++FEGIPCWP L LF
Sbjct: 291 NHMADVVTARARVEAAEAFELLADDLEETVKKGETTTPFPEKYRVMFEGIPCWPKLPNLF 350
Query: 290 EPLKDNGVNVTAVVYAPAFGFRYNNVREMAAAYCKAPCSVCIETGVEWRETMAKENGISG 349
+PLK++GVNVTAVVYAPAFGF YNN+ EMA AY KAP SVCIE GV+WRE + ++N + G
Sbjct: 351 KPLKEHGVNVTAVVYAPAFGFVYNNIDEMARAYYKAPNSVCIEQGVDWREGICRDNKVDG 410
Query: 350 ALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIM 409
LV+YNRSCKPWSG M E++RR+ EDLG+P FDGDQAD RNF+ QY TRVQGLVE M
Sbjct: 411 VLVHYNRSCKPWSGYMAEMQRRFTEDLGVPCAGFDGDQADPRNFNAAQYETRVQGLVEAM 470
Query: 410 QERKEEKLAK 419
+ K+ K AK
Sbjct: 471 EANKQAKEAK 480
Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats.
Identities = 67/91 (73%), Positives = 72/91 (79%)
Query: 21 PAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASTAAKK 80
P LR VVD V+ A EAK RGELVGWSSSKFP ELA AFDLNV+YPEN AA AA +
Sbjct: 7 PGVLALRKVVDDVHKEAREAKARGELVGWSSSKFPCELAAAFDLNVMYPENQAAGIAANR 66
Query: 81 DGLRLCQAAEDMGYDNDICGYARISLAYAAG 111
G +CQAAED+GYDNDICGYARISLAYAAG
Sbjct: 67 YGEMMCQAAEDLGYDNDICGYARISLAYAAG 97
>gi|145956308|ref|ZP_01805305.1| hypothetical protein CdifQ_04000418 [Clostridium difficile
QCD-32g58]
gi|54781342|gb|AAV40819.1| 2-hydroxyisocaproyl-CoA dehydratase [Clostridium difficile]
Length = 408
Score = 353 bits (905), Expect = 2e-95, Method: Composition-based stats.
Identities = 187/405 (46%), Positives = 252/405 (62%), Gaps = 5/405 (1%)
Query: 20 KPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASTAAK 79
K A ++ ++ + YANA++AK+ G VGWS+S FP ELA+ FDLNV+YPEN AA AAK
Sbjct: 5 KEARVVINDLLAEQYANAFKAKEEGRPVGWSTSVFPQELAEVFDLNVLYPENQAAGVAAK 64
Query: 80 KDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMPQPDFLLCCNNICNMMTKWY 139
K L LC+ AE GY D+C YAR + +A MP PDFLLCCNNICN + KWY
Sbjct: 65 KGSLELCEIAESKGYSIDLCAYARTNFGLLENGGCEALDMPAPDFLLCCNNICNQVIKWY 124
Query: 140 ENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDAC 199
ENI+R +IPLIMID F+N + + ++DY+ QF+ AIKQLE ++GKKFD KKFE+
Sbjct: 125 ENISRELDIPLIMIDTTFNNEDEVTQSRIDYIKAQFEEAIKQLEIISGKKFDPKKFEEVM 184
Query: 200 ARANRTAAAWLKSCKY-MGYKPSPLSGFDLFNHMADIVAARCDEEAAMGFELLADEFEQS 258
+ W S PSP++GFDLF +MA IV AR +E F+LL +E E +
Sbjct: 185 KISAENGRLWKYSMSLPADSSPSPMNGFDLFTYMAVIVCARGKKETTEAFKLLIEELEDN 244
Query: 259 IKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRY--NNVR 316
+K G S++ E++RI+ EGIPCWP + + L GVN+T VY A+ +Y N++
Sbjct: 245 MKTGKSSFRGEEKYRIMMEGIPCWPYIGYKMKTLAKFGVNMTGSVYPHAWALQYEVNDLD 304
Query: 317 EMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDL 376
MA AY +V ++ ++R E GA + NRSCK S E++RR E+
Sbjct: 305 GMAVAYSTMFNNVNLDRMTKYRVDSLVEGKCDGAFYHMNRSCKLMSLIQYEMQRRAAEET 364
Query: 377 GIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEKLAKGE 421
G+P FDGDQAD R F+ Q+ TR+QGLVE+M+ERK KL +GE
Sbjct: 365 GLPYAGFDGDQADPRAFTNAQFETRIQGLVEVMEERK--KLNRGE 407
>gi|126697966|ref|YP_001086863.1| subunit of oxygen-sensitive 2-hydroxyisocaproyl-CoA dehydratase
[Clostridium difficile 630]
gi|115249403|emb|CAJ67218.1| subunit of oxygen-sensitive 2-hydroxyisocaproyl-CoA dehydratase
[Clostridium difficile 630]
Length = 410
Score = 352 bits (904), Expect = 2e-95, Method: Composition-based stats.
Identities = 187/405 (46%), Positives = 252/405 (62%), Gaps = 5/405 (1%)
Query: 20 KPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASTAAK 79
K A ++ ++ + YANA++AK+ G VGWS+S FP ELA+ FDLNV+YPEN AA AAK
Sbjct: 7 KEARVVINDLLAEQYANAFKAKEEGRPVGWSTSVFPQELAEVFDLNVLYPENQAAGVAAK 66
Query: 80 KDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMPQPDFLLCCNNICNMMTKWY 139
K L LC+ AE GY D+C YAR + +A MP PDFLLCCNNICN + KWY
Sbjct: 67 KGSLELCEIAESKGYSIDLCAYARTNFGLLENGGCEALDMPAPDFLLCCNNICNQVIKWY 126
Query: 140 ENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDAC 199
ENI+R +IPLIMID F+N + + ++DY+ QF+ AIKQLE ++GKKFD KKFE+
Sbjct: 127 ENISRELDIPLIMIDTTFNNEDEVTQSRIDYIKAQFEEAIKQLEIISGKKFDPKKFEEVM 186
Query: 200 ARANRTAAAWLKSCKY-MGYKPSPLSGFDLFNHMADIVAARCDEEAAMGFELLADEFEQS 258
+ W S PSP++GFDLF +MA IV AR +E F+LL +E E +
Sbjct: 187 KISAENGRLWKYSMSLPADSSPSPMNGFDLFTYMAVIVCARGKKETTEAFKLLIEELEDN 246
Query: 259 IKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRY--NNVR 316
+K G S++ E++RI+ EGIPCWP + + L GVN+T VY A+ +Y N++
Sbjct: 247 MKTGKSSFRGEEKYRIMMEGIPCWPYIGYKMKTLAKFGVNMTGSVYPHAWALQYEVNDLD 306
Query: 317 EMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDL 376
MA AY +V ++ ++R E GA + NRSCK S E++RR E+
Sbjct: 307 GMAVAYSTMFNNVNLDRMTKYRVDSLVEGKCDGAFYHMNRSCKLMSLIQYEMQRRAAEET 366
Query: 377 GIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEKLAKGE 421
G+P FDGDQAD R F+ Q+ TR+QGLVE+M+ERK KL +GE
Sbjct: 367 GLPYAGFDGDQADPRAFTNAQFETRIQGLVEVMEERK--KLNRGE 409
>gi|153938029|ref|YP_001391492.1| putative R-2-hydroxyglutaryl-CoA dehydratase, alpha subunit
[Clostridium botulinum F str. Langeland]
gi|152933925|gb|ABS39423.1| putative R-2-hydroxyglutaryl-CoA dehydratase, alpha subunit
[Clostridium botulinum F str. Langeland]
Length = 410
Score = 348 bits (894), Expect = 3e-94, Method: Composition-based stats.
Identities = 185/401 (46%), Positives = 247/401 (61%), Gaps = 3/401 (0%)
Query: 17 EGHKPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAAST 76
E K AA ++ G++ K YA+AW+AK+ G VGWS+S FP EL + F L+V+YPEN AA
Sbjct: 6 EVKKNAAKVINGILAKSYADAWKAKEEGRPVGWSTSVFPQELVEVFGLDVLYPENQAAGV 65
Query: 77 AAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMPQPDFLLCCNNICNMMT 136
AAKK+ L LC+AAE GY D+C YAR + ++ MP+PDF+ CCNNICN +
Sbjct: 66 AAKKESLSLCEAAESAGYSIDLCAYARTNFGLLEKGGSENLNMPKPDFICCCNNICNQVI 125
Query: 137 KWYENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFE 196
KWYENIA+ +IPLIMID F+N + E ++ YL QF+ AIKQLE+++GKKFD KKFE
Sbjct: 126 KWYENIAKELDIPLIMIDTTFNNENEVTENRIKYLRAQFEEAIKQLEKISGKKFDPKKFE 185
Query: 197 DACARANRTAAAWLKSCKY-MGYKPSPLSGFDLFNHMADIVAARCDEEAAMGFELLADEF 255
+ + W S G PSP++GFDLF +MA IV R E F+LL E
Sbjct: 186 EVMKISAENGKLWKYSMSLPSGSFPSPMNGFDLFTYMAVIVCYRGKIETTEAFKLLISEL 245
Query: 256 EQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRY--N 313
E +IK +++ E++RI+ EGIPCWP + L GVN+T VY A+ +Y N
Sbjct: 246 EDNIKNKATSFRGEEKYRIMMEGIPCWPYIGYKMRTLAGYGVNMTGSVYPHAWALQYEVN 305
Query: 314 NVREMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWK 373
++ MA AY +V +E ++R + GA + NRSCK S E+ER+
Sbjct: 306 DLDGMAKAYSTMFNNVNLERMCKYRVDSLIDGNCDGAFYHMNRSCKLMSFIQYEMERQVF 365
Query: 374 EDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKE 414
E GIP FDGDQAD RNFS Q+ TR+QGLVE+M+ERK+
Sbjct: 366 EKTGIPYAGFDGDQADPRNFSKAQFETRLQGLVEVMEERKK 406
>gi|148380152|ref|YP_001254693.1| subunit of oxygen-sensitive 2-hydroxyisocaproyl-CoA dehydratase
[Clostridium botulinum A str. ATCC 3502]
gi|153932215|ref|YP_001384450.1| putative R-2-hydroxyglutaryl-CoA dehydratase, alpha subunit
[Clostridium botulinum A str. ATCC 19397]
gi|153936713|ref|YP_001387987.1| putative R-2-hydroxyglutaryl-CoA dehydratase, alpha subunit
[Clostridium botulinum A str. Hall]
gi|148289636|emb|CAL83739.1| subunit of oxygen-sensitive 2-hydroxyisocaproyl-CoA dehydratase
[Clostridium botulinum A str. ATCC 3502]
gi|152928259|gb|ABS33759.1| putative R-2-hydroxyglutaryl-CoA dehydratase, alpha subunit
[Clostridium botulinum A str. ATCC 19397]
gi|152932627|gb|ABS38126.1| putative R-2-hydroxyglutaryl-CoA dehydratase, alpha subunit
[Clostridium botulinum A str. Hall]
Length = 410
Score = 347 bits (889), Expect = 1e-93, Method: Composition-based stats.
Identities = 183/401 (45%), Positives = 247/401 (61%), Gaps = 3/401 (0%)
Query: 17 EGHKPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAAST 76
E K AA ++ G++ K YA+AW+AK+ G VGWS+S FP EL + F L+V+YPEN AA
Sbjct: 6 EVKKNAAKVINGILAKSYADAWKAKEEGRPVGWSTSVFPQELVEVFGLDVLYPENQAAGV 65
Query: 77 AAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMPQPDFLLCCNNICNMMT 136
AAKK+ L LC+AAE GY D+C YAR + ++ MP+PDF+ CCNNICN +
Sbjct: 66 AAKKESLSLCEAAESAGYSIDLCAYARTNFGLLEKGGSENLNMPKPDFICCCNNICNQVI 125
Query: 137 KWYENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFE 196
KWYENIA+ +IPLIMID F+N + E ++ YL QF+ AIKQLE+++GKKFD KKFE
Sbjct: 126 KWYENIAKELDIPLIMIDTTFNNENEVTENRIKYLRAQFEEAIKQLEKISGKKFDPKKFE 185
Query: 197 DACARANRTAAAWLKSCKY-MGYKPSPLSGFDLFNHMADIVAARCDEEAAMGFELLADEF 255
+ + W S G PSP++GFDLF +MA IV R E F+LL E
Sbjct: 186 EVMKISAENGKLWKYSMSLPSGSFPSPMNGFDLFTYMAVIVCYRGKIETTEAFKLLISEL 245
Query: 256 EQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRY--N 313
E +I+ +++ E++RI+ EGIPCWP + L GVN+T VY A+ +Y N
Sbjct: 246 EDNIRNKATSFRGEEKYRIMMEGIPCWPYIGYKMRTLAGYGVNMTGSVYPHAWALQYEVN 305
Query: 314 NVREMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWK 373
++ MA AY +V +E ++R + GA + NRSCK S E+ER+
Sbjct: 306 DLDGMAKAYSTMFNNVNLERMCKYRVDSLIDGNCDGAFYHMNRSCKLMSFIQYEMERQVF 365
Query: 374 EDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKE 414
+ GIP FDGDQAD RNFS Q+ TR+QGLVE+M+ERK+
Sbjct: 366 QKTGIPYAGFDGDQADPRNFSKAQFETRLQGLVEVMEERKK 406
>gi|118444701|ref|YP_878442.1| R-phenyllactate dehydratase medium subunit, putative [Clostridium
novyi NT]
gi|118135157|gb|ABK62201.1| R-phenyllactate dehydratase medium subunit, putative [Clostridium
novyi NT]
Length = 423
Score = 278 bits (712), Expect = 4e-73, Method: Composition-based stats.
Identities = 154/390 (39%), Positives = 216/390 (55%), Gaps = 16/390 (4%)
Query: 32 KVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASTAAKKDGLRLCQAAED 91
K+ A +AKK G+LV WS+S P E A D+ +VYPE HAA A+K L + + A+
Sbjct: 19 KLDEEARQAKKEGKLVCWSASVAPPEFCVAMDIAMVYPETHAAGIGARKGSLDMLEVADR 78
Query: 92 MGYDNDICGYARISLAY--------------AAGEPTDARRMPQPDFLLCCNNICNMMTK 137
GY DIC YAR++L Y A + A +P PD ++ CNNICN + K
Sbjct: 79 KGYSTDICSYARVNLGYMELLKEKALTGKTPEALANSPAADVPLPDLIITCNNICNTLLK 138
Query: 138 WYENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFED 197
WYEN+A NIP I+ID+PF++T+ P+ DY+ QF AI LEE+ G+KFD KF +
Sbjct: 139 WYENLAVELNIPCIVIDVPFNHTMPIPQYAKDYIAEQFKDAIATLEEVCGRKFDYDKFLE 198
Query: 198 ACARANRTAAAWLKSCKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAMGFELLADEFEQ 257
+ R+ A W + +KPSPL+ FDLFN MA IV AR + A + F+ ADE E+
Sbjct: 199 VQKQTQRSVAQWNRLAALSSHKPSPLNCFDLFNFMALIVCARSRDYAEITFKKFADELEE 258
Query: 258 SIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYN--NV 315
++K G ++ E+ RI +EGI WP L F+ LK G +T Y + Y ++
Sbjct: 259 NLKNGIYAFKGAEKKRITWEGIAVWPYLGHTFKSLKSLGSIMTGSAYPGLWNLTYTPGDM 318
Query: 316 REMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKED 375
MA AY + + C++ V+ + + G + NRSCK S E + +E
Sbjct: 319 SSMAEAYTRIYINTCLDNKVKVLSDIVEGGKCDGIAYHLNRSCKLMSFLNVETAEKLQEQ 378
Query: 376 LGIPVVHFDGDQADERNFSTEQYNTRVQGL 405
G+P V FDGDQ D RNF+ Q++TRVQ L
Sbjct: 379 NGLPYVSFDGDQTDPRNFAPAQFDTRVQAL 408
>gi|11499540|ref|NP_070782.1| 2-hydroxyglutaryl-CoA dehydratase, subunit alpha (hgdA)
[Archaeoglobus fulgidus DSM 4304]
gi|2648584|gb|AAB89297.1| 2-hydroxyglutaryl-CoA dehydratase, subunit alpha (hgdA)
[Archaeoglobus fulgidus DSM 4304]
Length = 391
Score = 198 bits (504), Expect = 6e-49, Method: Composition-based stats.
Identities = 122/386 (31%), Positives = 191/386 (49%), Gaps = 15/386 (3%)
Query: 32 KVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASTAAKKDGLRLCQAAED 91
++ A + + E+ GW +S P+EL A D+ VYPENH A A K G AE
Sbjct: 14 QIMAGYYMMGNQAEVKGWITSGAPVELLYAMDIYPVYPENHGALIGAAKQGPYFSDFAER 73
Query: 92 MGYDNDICGYAR--ISLAYAAGEPTDARRMPQPDFLLCCNNICNMMTKWYENIARIHNIP 149
G+ D+C YAR I +A P +P+P FL CNNICN + KWYE ++RI +P
Sbjct: 74 KGFSRDLCSYARCDIGCVFAGTSPIGG--LPEPTFLFACNNICNTVVKWYEVLSRIFKVP 131
Query: 150 LIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAW 209
L ++D PF + E V Y+ Q + LE+ TG++ + K D ++ + A+
Sbjct: 132 LFVLDTPFVRK-ELKESYVKYVHDQLYEFVDFLEKTTGRELSDSKLRDTVIKSIQGVKAY 190
Query: 210 LKSCKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAMGFELLADEFEQSIKEGTSTWEYP 269
+ +KPSPL+ FD F +MA IV R + + + +E E+ +K G E
Sbjct: 191 AEVLGMARHKPSPLTCFDAFINMAPIVCLRGTDYPVQFYAEMKEELEERVKRGEGAIE-N 249
Query: 270 EEHRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAF-GF----RYNNVREMAAAYCK 324
EE R+L++ IP W LK E + + A Y A+ GF + + MA Y
Sbjct: 250 EEIRLLWDNIPVWYRLKWFSEFFAERNACLVADTYTNAWTGFISIDKSDIFWSMAETYTF 309
Query: 325 APCSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFD 384
++ +E E + + GA+++ NRSCKP+S E+++ + +P V +
Sbjct: 310 IYLNIGLEHMAEAINRLIDYYDVDGAVIHSNRSCKPYSFGQYELQKM----IEVPSVIIE 365
Query: 385 GDQADERNFSTEQYNTRVQGLVEIMQ 410
D D R FS Q TR++ +E+++
Sbjct: 366 ADMVDSRTFSEAQVETRLEAFLEMLR 391
>gi|109645397|ref|ZP_01369317.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Desulfitobacterium
hafniense DCB-2]
gi|109643346|gb|EAT52899.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Desulfitobacterium
hafniense DCB-2]
Length = 409
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 115/381 (30%), Positives = 188/381 (49%), Gaps = 13/381 (3%)
Query: 34 YANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASTAAKKDGLRLCQAAEDMG 93
Y W K G + W +S P+E+ +AF ++ YPE +AA + K RLCQ AE G
Sbjct: 32 YHRYW-GKPLGRKIAWVTSGAPVEILRAFKIHPAYPEQYAAIYSTNKATARLCQVAEAAG 90
Query: 94 YDNDICGYARISLAYAAGEPTDARR--MPQPDFLLCCNNICNMMTKWYENIARIHNIPLI 151
Y D+C YAR ++ P A MP+PD L+ CNNIC + KWYE +AR +PL+
Sbjct: 91 YSQDLCSYARSNIG-GVLRPDLAPLGGMPKPDLLVACNNICGTVLKWYEVLARHFKVPLL 149
Query: 152 MIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLK 211
++D P+ T + E+ +Y++ Q + +LE++TG+ DEK+ E + T W +
Sbjct: 150 VLDTPYL-TGEMTEQARNYVLEQLKAMVVELEKITGRTLDEKELEKQMEFSRETTGLWKE 208
Query: 212 SCKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAMGFELLADEFE--QSIKEGTSTWEYP 269
+ + +PSPL+ DLF HMA IV R + + L DE + +++ +G
Sbjct: 209 ARQACQSRPSPLNAPDLFIHMAPIVVMRGTKGGRDYYRLFRDEVKGREALAQGAVE---N 265
Query: 270 EEHRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRY---NNVREMAAAYCKAP 326
E R++++ I WP + + + G Y+ + + +AA Y +
Sbjct: 266 ERIRLVWDNIAIWPKVFSFNKMFTERGACFVTDTYSGGWAMEQAPGTPLESLAATYTEVF 325
Query: 327 CSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGD 386
+ E + + ++ G +++ NRSCKP+S I RR + G+P + + D
Sbjct: 326 LNRSPEFRTKQLVQLIRDYQADGFVMHSNRSCKPYSLVQEVIRRRVMMETGVPGLMIEAD 385
Query: 387 QADERNFSTEQYNTRVQGLVE 407
AD R ++ E RVQ +E
Sbjct: 386 MADPRAYAEEPIRNRVQAFLE 406
>gi|89895061|ref|YP_518548.1| hypothetical protein DSY2315 [Desulfitobacterium hafniense Y51]
gi|89334509|dbj|BAE84104.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 409
Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats.
Identities = 114/381 (29%), Positives = 187/381 (49%), Gaps = 13/381 (3%)
Query: 34 YANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASTAAKKDGLRLCQAAEDMG 93
Y W K G + W +S P+E+ +AF ++ YPE +AA + K LCQ AE G
Sbjct: 32 YHRYW-GKPLGRKIAWVTSGAPVEILRAFKIHPAYPEQYAAIYSTNKATANLCQVAEAAG 90
Query: 94 YDNDICGYARISLAYAAGEPTDARR--MPQPDFLLCCNNICNMMTKWYENIARIHNIPLI 151
Y D+C YAR ++ P A MP+PD L+ CNNIC + KWYE +AR +PL+
Sbjct: 91 YSQDLCSYARSNIG-GVLRPDLAPLGGMPKPDLLVACNNICGTVLKWYEVLARHFKVPLL 149
Query: 152 MIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLK 211
++D P+ T + E+ +Y++ Q + +LE++TG+ DEK+ E + T W +
Sbjct: 150 VLDTPYL-TGEMTEQARNYVLEQLKAMVVELEKITGRTLDEKELEKQMEFSRETTGLWKE 208
Query: 212 SCKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAMGFELLADEFE--QSIKEGTSTWEYP 269
+ + +PSPL+ DLF HMA IV R + + L DE + +++ +G
Sbjct: 209 ARQACQSRPSPLNAPDLFIHMAPIVVMRGTKGGRDYYRLFRDEVKGREALAQGAVE---N 265
Query: 270 EEHRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRY---NNVREMAAAYCKAP 326
E R++++ I WP + + + G Y+ + + +AA Y +
Sbjct: 266 ERIRLVWDNIAIWPKVFSFNKMFTERGACFVTDTYSGGWAMEQAPGTPLESLAATYTEVF 325
Query: 327 CSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGD 386
+ E + + ++ G +++ NRSCKP+S I RR + G+P + + D
Sbjct: 326 LNRSPEFRTKQLVQLIRDYQADGFVMHSNRSCKPYSLVQEVIRRRVMMETGVPGLMIEAD 385
Query: 387 QADERNFSTEQYNTRVQGLVE 407
AD R ++ E RVQ +E
Sbjct: 386 MADPRAYAEEPIRNRVQAFLE 406
>gi|121543456|ref|ZP_01675123.1| (R)-2-hydroxyglutaryl-CoA dehydratase, alpha subunit [Candidatus
Desulfococcus oleovorans Hxd3]
gi|121516647|gb|EAX53584.1| (R)-2-hydroxyglutaryl-CoA dehydratase, alpha subunit [Candidatus
Desulfococcus oleovorans Hxd3]
Length = 419
Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats.
Identities = 121/404 (29%), Positives = 202/404 (50%), Gaps = 21/404 (5%)
Query: 32 KVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVY--PENHAASTAAKKDGLRLCQAA 89
K Y + G V W + P E+ FD NVV+ PE+HAA AAK G C A
Sbjct: 19 KTYTDIHTRAAAGAFVVWGAIIVPAEIFAGFD-NVVFCAPESHAAVCAAKGVGAAQCLKA 77
Query: 90 EDMGYDNDICGYARISLA-YAAG-EPTDARRMPQPDFLLCCNNICNMMTKWYENIARIHN 147
E +GY D+C YARI + ++ G + + +P+P L+ N C+++ KW++ R +
Sbjct: 78 ESLGYSMDLCSYARIDIGCFSDGCKESPTMGLPRPHLLISNTNNCSLLVKWFDVHRRDMD 137
Query: 148 IPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAA 207
IP ++D+PF +++ DY++ QF I+ +E L+G+ FD +F +A A +
Sbjct: 138 IPHFILDVPFCYGPQQEKDR-DYILTQFGDLIQTVERLSGQTFDRDRFYEAAAHTASASM 196
Query: 208 AWLKSCKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAMGFELLADEFEQSIKEGTSTWE 267
W + ++PS ++ FD F MA + AR E A +++LADE E ++K G +
Sbjct: 197 DWKRFMACAEHRPSGITVFDSFVQMAPFLIARGTPELAAHYKILADETEANVKAG--IFP 254
Query: 268 YPEE-HRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFG----------FRYNN-- 314
P+E +R+L++ I W L+ + L G N+ A Y G F N+
Sbjct: 255 VPDEKYRLLWDNIAPWHQLRKMSTRLAGMGANIVAAPYTSCIGAVEGSYDLLSFDENDDP 314
Query: 315 VREMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKE 374
+ +A + C + ++ + + ++ GI G + NRSCK +S + +RR +E
Sbjct: 315 LWYLARVQNHSVCPMGMDLRLSSMGPVIEKLGIDGVVFASNRSCKVFSVMQMDEQRRVRE 374
Query: 375 DLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEKLA 418
IP V D D AD R FS E R++ L+E ++ ++ ++
Sbjct: 375 QYDIPCVMIDVDHADVRKFSQENVYVRLEALLESIEAKRASAVS 418
>gi|78043965|ref|YP_359698.1| (R)-2-hydroxyglutaryl-CoA dehydratase, alpha subunit
[Carboxydothermus hydrogenoformans Z-2901]
gi|77996080|gb|ABB14979.1| (R)-2-hydroxyglutaryl-CoA dehydratase, alpha subunit
[Carboxydothermus hydrogenoformans Z-2901]
Length = 404
Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats.
Identities = 120/372 (32%), Positives = 183/372 (49%), Gaps = 14/372 (3%)
Query: 44 GELVGWSSSKFPIELAKAFDLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGYAR 103
G W +S P+EL +AF + VYPEN+ A A+K LCQ AE+ GY D+C YA+
Sbjct: 37 GYKTAWITSGAPVELLRAFGIEPVYPENYGAICGARKVSPSLCQVAENRGYSLDLCSYAK 96
Query: 104 ISLAYAAGEPTDA--RRMPQPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTV 161
+L + P ++ +P+PD L+ CNNIC + KWYE ++R NIPL +ID PF
Sbjct: 97 SNLG-SIWNPKESPFNGLPRPDLLVVCNNICGTVLKWYETLSREFNIPLFIIDTPFITGE 155
Query: 162 DTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLKSCKYMGYKPS 221
P + + Y+ Q + +LE+ KK D + E AN T W + KPS
Sbjct: 156 PQPWQ-IQYVAKQIEKLAIELEKFFRKKLDLNRLEKVILLANETVDLWKGIRNFAKNKPS 214
Query: 222 PLSGFDLFNHMADIVAARCDEEAAMGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPC 281
P++ DLF ++ +V R E A +E + E E+ K G E E++R++++ IP
Sbjct: 215 PVNVTDLFINLGPMVVLRGTEVARDFYEEVYREVEERYKAGVPAVE-GEKYRLVWDNIPI 273
Query: 282 WPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYNNVREMAAAYCKAP--CSVCIETGVEWR- 338
W GL + + G Y + N+++ Y A V + +E+R
Sbjct: 274 WYGLYRFYGYFAERGAVFVTDSYTGGWAV---NIKKGPPFYALAETYAGVFLNRDLEFRK 330
Query: 339 ---ETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFST 395
++ +E G +++ NRSCK +S EI R+ LG+P + D D D R +S
Sbjct: 331 NQLQSFIEEFSADGFVMHSNRSCKAYSFVQEEIRRQIMRSLGVPGLIVDADMTDSRLYSE 390
Query: 396 EQYNTRVQGLVE 407
E RVQ +E
Sbjct: 391 ETVLNRVQAFLE 402
>gi|121542310|ref|ZP_01674043.1| 2-hydroxyglutaryl-CoA dehydratase, subunit alpha (HgdA) [Candidatus
Desulfococcus oleovorans Hxd3]
gi|121517811|gb|EAX54686.1| 2-hydroxyglutaryl-CoA dehydratase, subunit alpha (HgdA) [Candidatus
Desulfococcus oleovorans Hxd3]
Length = 424
Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats.
Identities = 108/378 (28%), Positives = 180/378 (47%), Gaps = 18/378 (4%)
Query: 48 GWSSSKFPIELAKAFDLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGYARISL- 106
W+ + FPIEL D+ ++PEN A AA+K RL + AE MGY D+C Y + ++
Sbjct: 51 AWTCAGFPIELLLGLDIFPLHPENMATVAAAQKQSRRLIEHAESMGYSRDLCSYCKTNIG 110
Query: 107 AYAAGEPTDARRMPQPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIP--FSNTVD-T 163
A P + +PD + C N IC+ KW++ A ++PL + D P S T + T
Sbjct: 111 AVDTQAPLKHGGIARPDIITCTNTICDTHWKWFQVQAEKLDVPLFVFDCPKIVSGTDERT 170
Query: 164 PEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLKSCKYMGYKPSPL 223
E V YL+ QF +++ TGK+ + + A ++ + + W +Y P+P
Sbjct: 171 IEGYVTYLVEQFYEFFDFVKKHTGKEPNIDRMVRAAEKSEQLSVLWRDIYEYRKRVPTPY 230
Query: 224 SGFDLFNHMADIVAARCDEEAAMGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWP 283
S + +V FE + + Q ++G T E +R++FEGIP W
Sbjct: 231 SMAETSASFFPLVVMPGARSGIKFFEKILTDIRQRAEQGKGTLTGKERYRLMFEGIPFWY 290
Query: 284 GLKPLFEPLKDNGVNVTAVVYAP-AFGFR---------YNNVREMAAAYCKAPCSVCIET 333
++ +++ + V VVY P F F +R +A A P + +E
Sbjct: 291 RMRFMYDLARYGAV----VVYEPYTFSFAPPKPVSMGYAETLRHVARAMMDVPYTYNLEK 346
Query: 334 GVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNF 393
+ + + +E I G +++ N SC+P S M +++ +++ IPV+ D D R F
Sbjct: 347 RISYFKQAIQEYRIDGVILHENLSCRPSSTGMIDLKNAIQQECDIPVLIIQCDMNDPRAF 406
Query: 394 STEQYNTRVQGLVEIMQE 411
S EQ TRV+G +E+M +
Sbjct: 407 SEEQIKTRVEGFIELMDK 424
>gi|110598990|ref|ZP_01387232.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Geobacter sp.
FRC-32]
gi|110550266|gb|EAT63450.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Geobacter sp.
FRC-32]
Length = 415
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 108/377 (28%), Positives = 164/377 (43%), Gaps = 15/377 (3%)
Query: 47 VGWSSSKFPIELAKAFDLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGYARISL 106
V W +S P EL +A V +PENHAA A + L A +GY DIC Y +
Sbjct: 40 VAWCTSVGPAELLRAMGFAVHFPENHAAMLGATRLATDLIPEATAIGYSPDICSYLTSDI 99
Query: 107 -AYAAGEPTDAR------RMPQPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSN 159
AY G A+ +P+PD L+ N C + W+ AR +P I I P N
Sbjct: 100 GAYLKGFTPLAKAYPGIESVPKPDVLVYNTNQCRDVQDWFAWYAREFKVPCIGITSP-KN 158
Query: 160 TVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLKSCKYMGYK 219
+ ++ + GQ + I LE++TG + D + + A + W + +
Sbjct: 159 VNEVTAAHINDVAGQIEALIPILEQITGTRLDMARLRETVALSRECTQLWKEVLETATAS 218
Query: 220 PSPLSGFDLFNHMADIVAARCDEEAAMGFELLADEFEQSIKEGTSTWEYPEEHRILFEGI 279
P+PL+ FD HM V R +EA +++L E Q I G E E RI ++G+
Sbjct: 219 PAPLTFFDGTIHMGPAVVLRGTQEAVGYYQVLLAELRQRISAGVGAVE-GEAFRIYWDGM 277
Query: 280 PCWPGLKPLFEPLKDNGVNVTAVVYA-----PAFGFRYNNVREMAAAYCKAPCSVCIETG 334
P W L+ E G V A Y PAF + +R MA AY +
Sbjct: 278 PIWGRLRQHSELFSGLGTGVVASTYCSSWIFPAFD-DSDPLRSMAKAYLELFIVRSDTYK 336
Query: 335 VEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFS 394
+ + M + I G + + ++C S + + +R + + GIP + GD D R S
Sbjct: 337 EGYIKAMLNKFAIDGIIYHDAKTCPYNSNSRYGLHQRLERETGIPHLVISGDLNDMRCVS 396
Query: 395 TEQYNTRVQGLVEIMQE 411
EQ T V+ +E ++E
Sbjct: 397 DEQTKTNVEAFIEQLEE 413
>gi|62484827|emb|CAI78844.1| 2-hydroxyglutaryl-coa dehydratase, subunit alpha [uncultured
bacterium]
Length = 413
Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 180/398 (45%), Gaps = 14/398 (3%)
Query: 22 AAAILRGVV-DKVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASTAAKK 80
AA +R ++ D Y AK V W +S P EL +A V +PENH A A +
Sbjct: 14 AAKTMRKLMADHFYELDRAAKDGHPKVAWCTSVGPAELLRAMGFLVYFPENHGAMLGATR 73
Query: 81 DGLRLCQAAEDMGYDNDICGYARISL-AYAAGEP--TDARR----MPQPDFLLCCNNICN 133
AA +GY DIC Y + A+ G +DA +P+PD L+ N C
Sbjct: 74 MATETIPAANAVGYSPDICSYLTSDIGAFLQGRTPLSDAYEGIDGLPKPDVLVYNTNQCR 133
Query: 134 MMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEK 193
+ W + + P+I I+ + + + V + GQ + + LE+++G+KFD
Sbjct: 134 EVQDWLSWYGQCWSRPVIGIEC-YRGVAEVTDVHVAGIAGQIEALVPPLEQISGEKFDID 192
Query: 194 KFEDACARANRTAAAWLKSCKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAMGFELLAD 253
+ +A + + + W + + KPSPL+ FD HMA V R + A + L
Sbjct: 193 RLREAVRLSRQCSDLWKEVLETATAKPSPLTFFDSTIHMAPAVVMRGTQTAIDYYHELLP 252
Query: 254 EFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRY- 312
E + I +G + E E +R+ +EG+P W L+ L + V A YA ++ F
Sbjct: 253 ELKTRISDGVAAVE-DERYRLYWEGMPIWGRLRDLATQFLELRACVVASTYANSWIFTAL 311
Query: 313 ---NNVREMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIE 369
+ R MA AY + ++ + M G+ G + + +++C + +
Sbjct: 312 DPKDPFRSMARAYTELFIVRSDPYKEKYLQEMVGTFGVDGIVFHDSKTCPSNTNCRYAMP 371
Query: 370 RRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVE 407
+R +E LG+P + GD D R +S EQ T+++ VE
Sbjct: 372 QRLQERLGVPSITIAGDLNDLRCYSDEQARTQIEAFVE 409
>gi|145619329|ref|ZP_01775380.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Geobacter
bemidjiensis Bem]
gi|144944416|gb|EDJ79490.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Geobacter
bemidjiensis Bem]
Length = 596
Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats.
Identities = 108/378 (28%), Positives = 165/378 (43%), Gaps = 13/378 (3%)
Query: 47 VGWSSSKFPIELAKAFDLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGYARISL 106
V W +S P EL +A V +PENHAA A + L A +GY DIC Y L
Sbjct: 221 VAWCTSVGPAELLRAMGFAVHFPENHAAMLGATRLATDLIPEANAIGYSPDICSYLTSDL 280
Query: 107 -AYAAGEPTDAR------RMPQPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSN 159
AY G A+ +P+PD L+ N C + W+ AR +PLI I P N
Sbjct: 281 GAYLKGFTPLAKAYPGIAAVPKPDVLVYNTNQCRDVQDWFAWYARELGVPLIGITSP-KN 339
Query: 160 TVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLKSCKYMGYK 219
+ E V+ + Q + + LE + G D + ++ A + W + +
Sbjct: 340 VNEVTEAHVEDVTRQLEALVPVLEGIAGAPLDLARLKEVVALSRDCTELWKEVLETATAV 399
Query: 220 PSPLSGFDLFNHMADIVAARCDEEAAMGFELLADEFEQSIKEGTSTWEYPEEHRILFEGI 279
P+PL+ FD HM V R +A + +L E EQ K EE+RI ++G+
Sbjct: 400 PAPLTFFDGTIHMGPAVVLRGTPQAVEYYRVLLAELEQR-KATREAAVAGEEYRIYWDGM 458
Query: 280 PCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYNNVREMAAAYCKAPCSVCIETGVEWRE 339
P W L+P E NV A Y ++ F + E + KA + I ++E
Sbjct: 459 PVWGRLRPHSELFAGLKTNVVASTYCSSWIFPAFDAEEPLRSMAKAYLELFIVRSDAYKE 518
Query: 340 ----TMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFST 395
M K+ I G + + ++C S + + +R + + G+P + GD D R S
Sbjct: 519 RYLADMTKKFRIDGIVYHDAKTCPYNSNSRYGMPQRLEAETGLPYLVISGDLNDMRCVSD 578
Query: 396 EQYNTRVQGLVEIMQERK 413
EQ T V+ +E ++E K
Sbjct: 579 EQTKTNVEAFIEQLEEGK 596
>gi|90422542|ref|YP_530912.1| Benzoyl-CoA reductase, subunit B [Rhodopseudomonas palustris
BisB18]
gi|90104556|gb|ABD86593.1| Benzoyl-CoA reductase, subunit B [Rhodopseudomonas palustris
BisB18]
Length = 436
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 113/425 (26%), Positives = 180/425 (42%), Gaps = 26/425 (6%)
Query: 12 KPRPIEGHKPAA-AILRGVVDKVYANAWEAKKRGELVGWSSSKFPI-ELAKAFDLNVVYP 69
K +P E K A+ A + +V+ Y AK+RGE V + + EL FD+ P
Sbjct: 8 KTKPPEATKDASMARQKEMVNAHYDRLANAKERGEKVAATFVPGNLNELLMCFDMINNLP 67
Query: 70 ENHAASTAAKKDGLRLCQAAEDMGYDNDICGYAR--ISLAYAAGEPTDARRMPQPDFLLC 127
E +A +K AE +G+ D+C Y + I + + RR+P PD LL
Sbjct: 68 EVNAIQNGLRKQSGAFVMEAEKLGHSEDVCTYVKSDIGMMAKGNIGPNGRRLPDPDVLLL 127
Query: 128 CNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFD-HAIKQLEELT 186
C KW+E + R +N IM P+ ++ + Y++ Q I +LE ++
Sbjct: 128 SYTGCFTFMKWFELLRRQYNCETIMFQTPYLADGKITKDMISYMVKQLKLDVIPKLERIS 187
Query: 187 GKKFDEKKFED---ACARANRTAAAWLKSCKYMGYKPSPLSG-FDLFNHMADIVAA-RCD 241
G KFD + D A+A L+S K KPSP+ F ++ I A R
Sbjct: 188 GVKFDIDRLRDYLRKSAKAEDDHVWVLQSAK---NKPSPIDAYFGGIYYIGPIFGAFRGT 244
Query: 242 EEAAMGFELLADEFEQSIKEGTSTWEY-----PEEHRILFEGIPCWPGLKPLFEPLKDNG 296
+EA ++ L E EQ I EG E +R++ EG P + + ++ D G
Sbjct: 245 DEAIEYYKFLRAEVEQRIAEGKGPVTPDGDMGKERYRLVVEGPPNYTNFRQFWKMFYDEG 304
Query: 297 VNVTAVVYAPA-----FGFRYNNVR--EMAAAYC-KAPCSVCIETGVEWRETMAKENGIS 348
V A Y GFR++ R E A YC + + V+ E E
Sbjct: 305 AVVVASSYTKVGGTYDLGFRHDPDRPLESLAEYCLNVYTNRNLPMRVDMLENYMNEYEAD 364
Query: 349 GALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEI 408
G L+N +SC +S + R ++ G P + D D R FS R++ ++
Sbjct: 365 GLLINSIKSCNSFSAGQLLMMREVEKRTGKPAAFIETDLVDPRYFSAANVKNRLESYFQM 424
Query: 409 MQERK 413
+++++
Sbjct: 425 IEQKR 429
>gi|115522634|ref|YP_779545.1| benzoyl-CoA reductase, subunit B [Rhodopseudomonas palustris
BisA53]
gi|115516581|gb|ABJ04565.1| benzoyl-CoA reductase, subunit B [Rhodopseudomonas palustris
BisA53]
Length = 436
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 111/425 (26%), Positives = 181/425 (42%), Gaps = 26/425 (6%)
Query: 12 KPRPIEGHKPAA-AILRGVVDKVYANAWEAKKRGELVGWSSSKFPI-ELAKAFDLNVVYP 69
K +P E K A+ A + +V+ Y AK+RGE V + + EL FD+ P
Sbjct: 8 KTKPPEAAKDASMARQKEMVNAHYDRLANAKERGEKVAATFVPGNLNELLMCFDMVNNLP 67
Query: 70 ENHAASTAAKKDGLRLCQAAEDMGYDNDICGYAR--ISLAYAAGEPTDARRMPQPDFLLC 127
E +A +K AE +G+ D+C Y + I + + RR+P PD LL
Sbjct: 68 EVNAIQNGLRKQSGAFVMEAEKLGHSEDVCTYVKSDIGMMAKGNIGPNGRRLPDPDVLLL 127
Query: 128 CNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDH-AIKQLEELT 186
C KW+E + R +N IM P+ ++ + Y++ Q I +LE ++
Sbjct: 128 SYTGCFTFMKWFELLRRQYNCETIMFQTPYLADGKITKDMIAYMVKQLKQDVIPKLERIS 187
Query: 187 GKKFDEKKFED---ACARANRTAAAWLKSCKYMGYKPSPLSG-FDLFNHMADIVAA-RCD 241
G KFD + + A+A L+S K KPSP+ F ++ I A R
Sbjct: 188 GVKFDIDRLREYLRKSAKAEDDHVWVLQSAK---NKPSPIDAYFGGIYYIGPIFGAFRGT 244
Query: 242 EEAAMGFELLADEFEQSIKEGTSTWEY-----PEEHRILFEGIPCWPGLKPLFEPLKDNG 296
++A ++ L E EQ I +G E +R++ EG P + + ++ D G
Sbjct: 245 DDAIEYYKFLRAEVEQRIADGKGPVTPDGDMGKERYRLVVEGPPNYTNFRQFWKMFSDEG 304
Query: 297 VNVTAVVYAPA-----FGFRYNNVR--EMAAAYC-KAPCSVCIETGVEWRETMAKENGIS 348
V A Y FGFR++ R E A YC + + V+ E E
Sbjct: 305 AVVVASSYTKVGGTYDFGFRHDPDRPLESLAEYCLNVYTNRNLPMRVDMLENYMNEYEAD 364
Query: 349 GALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEI 408
G L+N +SC +S + R ++ G P + D D R FS R++ ++
Sbjct: 365 GLLINSIKSCNSFSAGQLLMMREVEKRTGKPAAFIETDLVDPRYFSAANVKNRLESYFQM 424
Query: 409 MQERK 413
+++++
Sbjct: 425 IEQKR 429
>gi|62484850|emb|CAI78867.1| benzoyl-CoA reductase, beta subunit [uncultured bacterium]
Length = 438
Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats.
Identities = 110/423 (26%), Positives = 184/423 (43%), Gaps = 61/423 (14%)
Query: 32 KVYANAWEAKKRGELV----GWSSSKFPIELAKAFDLNVVYPENHAASTAAKKD-GLRLC 86
K Y + +A +RG L WS S P L + D+ + E +AAS A K+ LR
Sbjct: 23 KYYEDYAKAHERGGLRWSGGAWSFSAIPSGLGQ--DVWSLTSEPYAASIAFNKEFSLRCL 80
Query: 87 QAAEDMGYDNDICGYAR------ISLAYAAGEPTDARRMPQPDFLLCCNNICNMMTKWYE 140
+AAE GY D+C Y R I Y G P P+PDF+ ++IC KWY+
Sbjct: 81 EAAEKAGYARDLCAYMRNYWGSVILNEYVLGGP-----FPKPDFIWQ-DHICCSHAKWYQ 134
Query: 141 NIARIHN-IPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDAC 199
++ + IP +D+ D K+DYL+GQ I+ LE+ TG+K+ ++ +A
Sbjct: 135 VVSDLEGGIPHFSMDVAVGPYQDMAPHKIDYLVGQMQDGIEWLEKTTGRKYSDELLIEAV 194
Query: 200 ARANRTAAAWLKSCKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAMGFELLADEFEQSI 259
R+ + W + C Y P+PL +++ + D A ++ L DE ++ +
Sbjct: 195 KNEFRSTSTWAEICAYNKNIPAPLDEKTMYSLYVLGTLNKHDRSTADFYDELRDEIKERV 254
Query: 260 KEGTSTWEYPEEH-RILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYNNVREM 318
++G + P E R++ + P W G +F +++ G A+ + F + E
Sbjct: 255 EDGIAA--IPNERCRLMSDTQPPW-GFLSIFRYMEEFG----AISIGSLYTFGLIGIWED 307
Query: 319 AAAYCKAPCSVCIETGV--------------------EWRE------------TMAKENG 346
P + ++ G+ EW+ +AKE
Sbjct: 308 KPDGSWGPRTTPMQQGIQIKDREQALRLYADWTLSRPEWQHFYSPHIKTEMMIRIAKEWH 367
Query: 347 ISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLV 406
++G L++YNR C+ S + E R + G PV+ F+G+ DER F + R +
Sbjct: 368 LNGILLHYNRGCEGLSVGIAE-NRLGLIEAGYPVMAFEGNMGDEREFDEARVKDRFDAFM 426
Query: 407 EIM 409
E +
Sbjct: 427 ETL 429
>gi|91976016|ref|YP_568675.1| Benzoyl-CoA reductase, subunit B [Rhodopseudomonas palustris BisB5]
gi|91682472|gb|ABE38774.1| Benzoyl-CoA reductase, subunit B [Rhodopseudomonas palustris BisB5]
Length = 436
Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats.
Identities = 111/425 (26%), Positives = 180/425 (42%), Gaps = 26/425 (6%)
Query: 12 KPRPIEGHKPAA-AILRGVVDKVYANAWEAKKRGELVGWSSSKFPI-ELAKAFDLNVVYP 69
K RP E K A+ A + +V+ Y AK+RGE V + + EL FD+ P
Sbjct: 8 KTRPPEVVKDASMARQKEMVNAHYDRLANAKERGEKVAATFVPGNLNELLMCFDMVNNLP 67
Query: 70 ENHAASTAAKKDGLRLCQAAEDMGYDNDICGYAR--ISLAYAAGEPTDARRMPQPDFLLC 127
E +A ++ AE +G+ D+C Y + I + + RR+P PD LL
Sbjct: 68 EVNAIQNGLRRQSGAFVMEAEKLGHSEDVCTYVKSDIGMMAKGNIGPNGRRLPDPDVLLL 127
Query: 128 CNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDH-AIKQLEELT 186
C KW+E + R + IM P+ ++ + Y++ Q I +LE ++
Sbjct: 128 SYTGCFTFMKWFELLRRQYGCETIMFQTPYLADGKITKDMIAYMVKQLKQDVIPKLERIS 187
Query: 187 GKKFDEKKFED---ACARANRTAAAWLKSCKYMGYKPSPLSG-FDLFNHMADIVAA-RCD 241
G KFD + + A+A L+S K KPSP+ F ++ I A R
Sbjct: 188 GVKFDIDRLREYLRKSAKAEDDHVWVLQSAK---NKPSPIDAYFGGIYYIGPIFGAFRGT 244
Query: 242 EEAAMGFELLADEFEQSIKEGTSTWEY-----PEEHRILFEGIPCWPGLKPLFEPLKDNG 296
++A ++ L E EQ I EG E +R++ EG P + + ++ D G
Sbjct: 245 DDAIDYYKFLRAEVEQRIAEGKGPVTPDGDMGKERYRLVVEGPPNYTNFRQFWKMFYDEG 304
Query: 297 VNVTAVVYAPA-----FGFRYNNVR--EMAAAYC-KAPCSVCIETGVEWRETMAKENGIS 348
V A Y FGFR++ R E A YC + + V+ E E
Sbjct: 305 AVVVASSYTKVGGTYDFGFRHDPDRPLESLAEYCLNVYTNRNLPMRVDMLENYMNEYEAD 364
Query: 349 GALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEI 408
G L+N +SC +S + R ++ G P + D D R FS R++ ++
Sbjct: 365 GLLINSIKSCNSFSAGQLLMMREVEKRTGKPAAFIETDLVDPRYFSAANVKNRLESYFQM 424
Query: 409 MQERK 413
+++++
Sbjct: 425 IEQKR 429
>gi|39933735|ref|NP_946011.1| benzoyl-CoA reductase subunit [Rhodopseudomonas palustris CGA009]
gi|3165396|gb|AAC23926.1| benzoyl-CoA reductase subunit [Rhodopseudomonas palustris]
gi|39647582|emb|CAE26102.1| benzoyl-CoA reductase subunit [Rhodopseudomonas palustris CGA009]
Length = 436
Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 108/432 (25%), Positives = 185/432 (42%), Gaps = 26/432 (6%)
Query: 5 MEKLPNKKPRPIEGHKPAA-AILRGVVDKVYANAWEAKKRGELVGWSSSKFPI-ELAKAF 62
M + K +P E K A+ A + +V+ Y AK+RGE V + + EL F
Sbjct: 1 MTVIVGPKTKPPEAIKDASMARQKQMVNAHYDRLASAKERGEKVAATFVPGNLNELLMCF 60
Query: 63 DLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGYAR--ISLAYAAGEPTDARRMP 120
D+ PE +A ++ AE +G+ D+C Y + I + + + +P
Sbjct: 61 DMVNNLPEVNAIQNGLRRQSGGYVMEAEKLGHSEDVCTYVKSDIGMMAKGNIGPNGKPLP 120
Query: 121 QPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDH-AI 179
PD LL C KW+E + R + IM P+ ++ + Y++ Q I
Sbjct: 121 DPDVLLLSYTGCFTFMKWFELLRRQYKCETIMFQTPYLADGRITKDMISYMVKQLRQDVI 180
Query: 180 KQLEELTGKKFDEKKFED---ACARANRTAAAWLKSCKYMGYKPSPLSG-FDLFNHMADI 235
+LE ++G KFD + + A+A L+S K+ KPSP+ F ++ I
Sbjct: 181 PKLERISGVKFDIDRLREYLRKSAKAEDDHVWVLQSAKH---KPSPIDAYFGGIYYIGPI 237
Query: 236 VAA-RCDEEAAMGFELLADEFEQSIKEG----TSTWEYPEE-HRILFEGIPCWPGLKPLF 289
A R ++A ++ L E EQ I +G T + +E +R++ EG P + + +
Sbjct: 238 FGAFRGTDDAIEYYKFLRAEVEQRIAQGKGPVTPDGDMGQERYRLVVEGPPNYTNFRQFW 297
Query: 290 EPLKDNGVNVTAVVYAPA-----FGFRYNNVR--EMAAAYC-KAPCSVCIETGVEWRETM 341
+ D G V A Y +GFR++ R E A YC + + V+ E
Sbjct: 298 KMFYDEGAVVVASSYTKVGGTYDYGFRHDPDRPLESLAEYCLNVYTNRNLPMRVDMLENY 357
Query: 342 AKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTR 401
E G L+N +SC +S + R ++ G P + D D R FS R
Sbjct: 358 INEYEADGLLINSIKSCNSFSAGQLLMMREVEKRTGKPAAFIETDLVDPRYFSAANVKNR 417
Query: 402 VQGLVEIMQERK 413
++ +++++++
Sbjct: 418 LESYFQMIEQKR 429
>gi|3724169|emb|CAA12248.1| B-subunit of benzoyl-CoA reductase [Thauera aromatica]
Length = 432
Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats.
Identities = 101/383 (26%), Positives = 159/383 (41%), Gaps = 34/383 (8%)
Query: 57 ELAKAFDLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGY--ARISLAYAAGEPT 114
EL FD+ PE +A +K + AE G+ D+C Y A I +
Sbjct: 50 ELIMCFDMVNNLPETNAIQNGMRKQSGGMIMDAEKAGHSEDVCTYVKADIGMMGRGNIAP 109
Query: 115 DARRMPQPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQ 174
+ + MP PD LL C KW+E + + P +M+ IP+ + D+++ Q
Sbjct: 110 NGKPMPAPDMLLLSYTGCFTFMKWFELLRHEYKCPTVMLQIPYQGDGKITKNMRDFVVKQ 169
Query: 175 F-DHAIKQLEELTGKKFDEKKFED---ACARANRTAAAWLKSCKYMGYKPSPLSGF--DL 228
+ I E+++G KFD + + A+A L+S K +PSP+ + +
Sbjct: 170 LKEEVIPMFEQVSGVKFDIDRLREYLKNSAKAEDDLVWVLESAK---NRPSPIDAYFGGV 226
Query: 229 FNHMADIVAARCDEEAAMGFELLADEFEQSIKEG----TSTWEYPEE-HRILFEGIPCWP 283
+ A R +A + LL E EQ I+EG T + EE +R++ EG P W
Sbjct: 227 YYIGPMFTAFRGTADAVEYYGLLRGEIEQRIREGKGPITPEGDMKEEKYRLVVEGPPNWT 286
Query: 284 GLKPLFEPLKDNGVNVTAVVYAPAF-----GFRY--NNVREMAAAYCKAPCSV--CIETG 334
+ ++ D G V A Y GFR+ N+ A YC C +
Sbjct: 287 SFREFWKLFYDEGAVVVASSYTKVGGLYDQGFRHDPNDPLGTLADYCLG-CYTNNNLPQR 345
Query: 335 VEWRETMAKENGISGALVNYNRSCKPWSGA----MPEIERRWKEDLGIPVVHFDGDQADE 390
VE E E G L+N +SC +S M EIE+R G P + D D
Sbjct: 346 VELLEKYMNEYQADGLLINSIKSCNSFSAGQLLMMREIEKR----TGKPAAFIETDLVDP 401
Query: 391 RNFSTEQYNTRVQGLVEIMQERK 413
R FS R++ +++ +++
Sbjct: 402 RYFSHANVKNRLESYFQMVDQKR 424
>gi|56478437|ref|YP_160026.1| benzoyl CoA reductase subunit [Azoarcus sp. EbN1]
gi|56314480|emb|CAI09125.1| Benzoyl CoA reductase subunit [Azoarcus sp. EbN1]
Length = 437
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 102/423 (24%), Positives = 180/423 (42%), Gaps = 50/423 (11%)
Query: 31 DKVYANAWEAKKRGELVGWSSSKFPIELAKAF---DLNVVYPENHAASTAAKKDGLRLC- 86
++ Y N AK++G + WS S + ++ A D+ + E +AA+ A + + C
Sbjct: 24 EQYYQNYARAKEKGG-IRWSGSAWALDAIPAGLGEDVYSLTGEPYAAAVAHDRKFAKECM 82
Query: 87 QAAEDMGYDNDICGYARISLA------YAAGEPTDARRMPQPDFLLCCNNICNMMTKWYE 140
AAE G+ D+C Y RI YA G P+PDF+ IC +KWY+
Sbjct: 83 DAAEAYGFARDLCSYMRIYWGGMHLNKYAFGG-----EFPKPDFVFQ-TQICCSHSKWYQ 136
Query: 141 NIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDACA 200
++A+ +P +D+ D + ++DY+ Q I+ +E+ +G+KFD++ F A
Sbjct: 137 HVAKEEKVPEFYLDVGVGPYRDMTDARLDYVANQLHDGIEFVEKASGRKFDDELFIKAVK 196
Query: 201 RANRTAAAWLKSCKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAMGFELLADEFEQSIK 260
R+ + W C KP+PL +++ + + A + L +E + +
Sbjct: 197 NEMRSTSRWADICALNKVKPAPLDEKTMYSLYVLCTLQKSSQWCADFMDELYEEVKDRVA 256
Query: 261 EGTSTWEYPEEH-RILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYNNVREMA 319
G + P E R++ + P W LK +F L+ G +Y A + + + +
Sbjct: 257 RGIAA--VPNESVRLMTDTQPPWSFLK-IFRYLETYGAVSIGSLYTFALEGIWEDKPDGS 313
Query: 320 AAYCKAPCSVCIE-----TGV-----------EWRE------------TMAKENGISGAL 351
P IE T V +W+ + +E + G +
Sbjct: 314 WGGRTLPWEKGIEINDRATAVRLYADWNLSKPQWQHFYDPRIKSEMMLRIIREWQVDGVM 373
Query: 352 VNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQE 411
++ NR C+ S + E R GIPV+ F+G+ DER F + RV +E +
Sbjct: 374 LHLNRGCEGLSIGIME-NRLAIAKAGIPVMTFEGNMGDEREFDEVRTQARVDAFMEQLGM 432
Query: 412 RKE 414
R++
Sbjct: 433 RRQ 435
>gi|46202064|ref|ZP_00208366.1| COG1775: Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase
subunit, BcrC/BadD/HgdB [Magnetospirillum
magnetotacticum MS-1]
Length = 421
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 92/380 (24%), Positives = 160/380 (42%), Gaps = 27/380 (7%)
Query: 57 ELAKAFDLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGYARISLAYAA--GEPT 114
EL FD+ PE +A +K AE G+ D+C Y + + +
Sbjct: 36 ELLMCFDIVNNLPEINAIQAGMRKASGGYIMEAEKSGHSEDVCTYVKADIGQMSKGNIAP 95
Query: 115 DARRMPQPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQ 174
+ + P PD L+ C KW+E + + P +M+ +P+ + + DY++ Q
Sbjct: 96 NGKPYPVPDVLMLSYTGCYTFMKWFELLREEYKCPTLMLHVPYEGDGHSTKNMRDYIVKQ 155
Query: 175 FDH-AIKQLEELTGKKFDEKKFEDACARANRTAAAWLKSCKYMGYKPSPLSG-FDLFNHM 232
I LE+++G KFD + + + + + KPSP+ F ++
Sbjct: 156 LKEVVIPGLEQVSGVKFDIDRLRQYLKNSAKAEDDLVWCLEQGKVKPSPIDAYFGGVYYI 215
Query: 233 ADIVAA-RCDEEAAMGFELLADEFEQSIK--EGTSTWE----YPEEHRILFEGIPCWPGL 285
I A R E+A +E+L E + I+ +G T E +++R++ EG P W
Sbjct: 216 GPIFTAFRGTEDAVSYYEMLRKEVQGRIENHQGPMTPEGTYFNDQKYRLIVEGPPNWTNF 275
Query: 286 KPLFEPLKDNGVNVTAVVYAPAF-----GFRY--NNVREMAAAYC-KAPCSVCIETGVEW 337
+ ++ D G V A Y GFR+ +N E A YC ++ + T V+
Sbjct: 276 REFWKMFYDEGAVVVASSYTKVGGLYDQGFRHDPDNPLESLADYCLGCYTNLNLPTRVDL 335
Query: 338 RETMAKENGISGALVNYNRSCKPWSGA----MPEIERRWKEDLGIPVVHFDGDQADERNF 393
+E G L+N +SC +S M E+ERR G P + D D R F
Sbjct: 336 LAKYVEEYEADGLLINSIKSCNSFSAGQLMIMKEVERR----TGRPGAFIETDLVDPRYF 391
Query: 394 STEQYNTRVQGLVEIMQERK 413
S R++ +++++++
Sbjct: 392 SAANVKNRLESYFQMIEQKR 411
>gi|83311239|ref|YP_421503.1| B-subunit of benzoyl-CoA reductase [Magnetospirillum magneticum
AMB-1]
gi|82946080|dbj|BAE50944.1| B-subunit of benzoyl-CoA reductase [Magnetospirillum magneticum
AMB-1]
Length = 432
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 95/381 (24%), Positives = 160/381 (41%), Gaps = 29/381 (7%)
Query: 57 ELAKAFDLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGYARISLAYAA--GEPT 114
EL FD+ PE +A +K AE G+ D+C Y + + +
Sbjct: 47 ELLMCFDIVNNLPEINAIQAGMRKASGGYIMEAEKSGHSEDVCTYVKADIGQMSKGNIAP 106
Query: 115 DARRMPQPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQ 174
+ + P PD L+ C KW+E + + P +M+ +P+ + + DY++ Q
Sbjct: 107 NGKPYPNPDVLMLSYTGCYTFMKWFELLREEYKCPTLMLHVPYEGDGHSTKNMRDYIVKQ 166
Query: 175 FDH-AIKQLEELTGKKFDEKKFEDACARANRTAAAWLKSCKYMG-YKPSPLSG-FDLFNH 231
I LE+++G KFD + R + A L C G KPSP+ F +
Sbjct: 167 LKEVVIPGLEQVSGVKFDIDRLRQYL-RNSAKAEDNLVWCLEQGKVKPSPIDAYFGGVYY 225
Query: 232 MADIVAA-RCDEEAAMGFELLADEFEQSIKEGT------STWEYPEEHRILFEGIPCWPG 284
+ I A R E+A +E+L E + I+ T+ +++R++ EG P W
Sbjct: 226 IGPIFTAFRGTEDAVSYYEMLRKEVQGRIENHQGPLTPEGTYFNDQKYRLIVEGPPNWTN 285
Query: 285 LKPLFEPLKDNGVNVTAVVYAPAF-----GFRY--NNVREMAAAYC-KAPCSVCIETGVE 336
+ ++ D G V A Y GFR+ +N E A YC ++ + T V+
Sbjct: 286 FREFWKMFYDEGAIVVASSYTKVGGLYDQGFRHDPDNPLESLADYCLGCYTNLNLPTRVD 345
Query: 337 WRETMAKENGISGALVNYNRSCKPWSGA----MPEIERRWKEDLGIPVVHFDGDQADERN 392
+E G L+N +SC +S M E+ERR G P + D D R
Sbjct: 346 LLAKYVEEYEADGLLINSIKSCNSFSAGQLMIMKEVERR----TGRPGAFIETDLVDPRY 401
Query: 393 FSTEQYNTRVQGLVEIMQERK 413
FS R++ +++++++
Sbjct: 402 FSAANVKNRLESYFQMIEQKR 422
>gi|56475814|ref|YP_157403.1| benzoyl CoA reductase subunit [Azoarcus sp. EbN1]
gi|56311857|emb|CAI06502.1| Benzoyl CoA reductase subunit [Azoarcus sp. EbN1]
Length = 434
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 99/425 (23%), Positives = 175/425 (41%), Gaps = 56/425 (13%)
Query: 31 DKVYANAWEAKKRGEL----VGWSSSKFPIELAKAFDLNVVYP---ENHAASTAAKKDGL 83
++ Y N AK G + GWS P L + VYP E ++A + +
Sbjct: 21 EQYYQNFARAKDNGGIRWSAAGWSFDAIPTSLG-----DDVYPLTGEPYSAGVSLDRKFT 75
Query: 84 RLC-QAAEDMGYDNDICGYARISL-AYAAGEPTDARRMPQPDFLLCCNNICNMMTKWYEN 141
+ C AAE G+ D+C Y RI + E + P DF+ IC KWY++
Sbjct: 76 QRCLDAAESYGFARDMCSYMRIYWGSMHLDEYFYGGKWPTSDFIFQ-TQICCSHAKWYQH 134
Query: 142 IARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDACAR 201
++R IP +D+ D + +DY+ Q +I+ +E+ TG+K D++ A
Sbjct: 135 VSRTKKIPDFYVDVSVGAYKDLTSDSLDYVTSQLHDSIEFVEKATGRKCDDELLIRAIKN 194
Query: 202 ANRTAAAWLKSCKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAMGFELLADEFEQSIKE 261
R+ A W + C+ P+PL +++ + + + A ++ L +E + +
Sbjct: 195 EMRSTARWAQICELQKAVPAPLDEKTMYSLYVLAILHKSSQWCADFYDELYEEVKDRVAR 254
Query: 262 GTSTWEYPEEH-RILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYNNVREMAA 320
G + P E R++ + P WP LK +F L+ G AV + F E
Sbjct: 255 GIAA--VPNERCRLMSDTQPPWPFLK-IFRYLETYG----AVSIGSLYTFGLEGTWEYKE 307
Query: 321 AYCKAPCSVCIETGVE--------------------WRE------------TMAKENGIS 348
++ E G+E W++ +A++ +
Sbjct: 308 DGSWGARTLPWEKGIEMNDRDTALRLYADWNLSKPLWQQFFDPSVKSEMMLNIARDWNVD 367
Query: 349 GALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEI 408
G +++ NR C+ S + E R+ GIP++ ++G+ DER F + RV +E
Sbjct: 368 GCMMHLNRGCEGLSVGIME-NRQAIAKAGIPIMTYEGNMGDEREFDEVRTQARVDAFMEQ 426
Query: 409 MQERK 413
+ R+
Sbjct: 427 LGLRR 431
>gi|45649068|gb|AAQ08807.1| BzdO [Azoarcus sp. CIB]
Length = 437
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 103/423 (24%), Positives = 179/423 (42%), Gaps = 50/423 (11%)
Query: 31 DKVYANAWEAKKRGELVGWSSSKFPIELAKAF---DLNVVYPENHAASTAAKKDGLRLC- 86
++ Y N AK++G + WS S + ++ A D+ + E +AA+ A + + C
Sbjct: 24 EQYYMNYARAKEKGG-IRWSGSAWALDAIPAGLGEDVYSLTGEPYAAAVAHDRKFAKECM 82
Query: 87 QAAEDMGYDNDICGYARISLA------YAAGEPTDARRMPQPDFLLCCNNICNMMTKWYE 140
AAE G+ D+C Y RI YA G P+PDF+ IC +KWY+
Sbjct: 83 DAAEAYGFARDLCSYMRIYWGGMHLNKYAFGG-----EFPKPDFVFQ-TQICCSHSKWYQ 136
Query: 141 NIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDACA 200
++A+ IP +D+ D + ++DY+ Q I +E+ +G+KFD++ F A
Sbjct: 137 HVAKEEKIPEFYLDVGVGPYRDMTDARLDYVANQLHDGIAFVEKASGRKFDDELFIKAVK 196
Query: 201 RANRTAAAWLKSCKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAMGFELLADEFEQSIK 260
R+ + W C KP+PL +++ ++ + A + L +E + +
Sbjct: 197 NEMRSTSRWADICALNKVKPAPLDEKTMYSLYVLCTLSKSSQWCADFMDELYEEVKDRVA 256
Query: 261 EGTSTWEYPEEH-RILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYNNVREMA 319
G + P E R++ + P W LK +F L+ G +Y A + + + +
Sbjct: 257 RGIAA--VPNEAIRLMTDTQPPWSFLK-IFRYLETYGAVSIGSLYTFALEGIWEDKPDGS 313
Query: 320 AAYCKAPCSVCIE-----TGV-----------EWRE------------TMAKENGISGAL 351
P IE T V +W+ + KE + G +
Sbjct: 314 WGGRTLPWDKGIEINDRDTAVRLYADWNLSKPQWQHFYDPTIKSDMMLRIIKEWQVDGVM 373
Query: 352 VNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQE 411
++ NR C+ S + E R G PV+ F+G+ DER F + RV +E +
Sbjct: 374 LHLNRGCEGLSVGIME-NRLAIAKSGTPVMTFEGNMGDEREFDEVRTQARVDAFMEQLGV 432
Query: 412 RKE 414
R++
Sbjct: 433 RRQ 435
>gi|18369656|emb|CAD21629.1| benzoyl CoA reductase subunit [Azoarcus evansii]
Length = 434
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 99/427 (23%), Positives = 180/427 (42%), Gaps = 58/427 (13%)
Query: 31 DKVYANAWEAKKRGELVGWSSSKFPIELAKAF---DLNVVYPENHAASTAAKKDGLRLC- 86
++ Y N AK++G + WS S + ++ A D+ + E +AA+ A + + C
Sbjct: 21 EQYYMNYARAKEKGG-IRWSGSAWALDAIPAGLGEDVYSLTGEPYAAAVAHDRKFAKECM 79
Query: 87 QAAEDMGYDNDICGYARISLA------YAAGEPTDARRMPQPDFLLCCNNICNMMTKWYE 140
AAE G+ D+C Y RI YA G P+PDF+ IC +KWY+
Sbjct: 80 DAAEAYGFARDLCSYMRIYWGGMHLNKYAFGG-----EFPKPDFVFQ-TQICCSHSKWYQ 133
Query: 141 NIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDACA 200
++A+ IP +D+ D + ++DY+ Q I+ +++ +G++F+++ F +A
Sbjct: 134 HVAKEEKIPEFYLDVGVGPYKDMTDARLDYVANQLHDGIEFVQKASGREFNDELFIEAVK 193
Query: 201 RANRTAAAWLKSCKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAMGFELLADEFEQSIK 260
R+ + W C KP+PL +++ ++ + A + L +E + +
Sbjct: 194 NEMRSTSRWADICALNKVKPAPLDEKTMYSLYVLCTLSKSSKWCADFMDELYEEVKDRVA 253
Query: 261 EGTSTWEYPEEH-RILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYNNVREMA 319
G + P E R++ + P W LK +F L+ G AV + F + E
Sbjct: 254 RGIAA--VPNETIRLMTDTQPPWSFLK-IFRYLETYG----AVSIGSLYTFALEGIWEEK 306
Query: 320 AAYCKAPCSVCIETGVEWRE--------------------------------TMAKENGI 347
A ++ G+E ++ + KE +
Sbjct: 307 ADGTWGGRTLPWNKGIEIKDRATAVRLYADWNLSKPQWQHFYDPTIKSDMMLRIIKEWQV 366
Query: 348 SGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVE 407
G +++ NR C+ S + E R G PV+ F+G+ DER F + RV +E
Sbjct: 367 DGVMLHLNRGCEGLSVGIME-NRLAIAKSGTPVMTFEGNMGDEREFDEVRTQARVDAFME 425
Query: 408 IMQERKE 414
+ R++
Sbjct: 426 QLGVRRQ 432
>gi|51850068|dbj|BAD42372.1| putative B-subunit of benzoyl-CoA reductase [Magnetospirillum sp.
TS-6]
Length = 433
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 91/382 (23%), Positives = 158/382 (41%), Gaps = 32/382 (8%)
Query: 57 ELAKAFDLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGYARISLAYAA--GEPT 114
EL +D+ PE +A +K AE G+ D+C Y + + +
Sbjct: 47 ELLMCYDIVNNLPEINAIQAGMRKASGGYIMEAEKSGHSEDVCTYVKADIGQMSKGNIAP 106
Query: 115 DARRMPQPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQ 174
+ R P PD L+ C KW+E + + P +M+ +P+ + + DY++ Q
Sbjct: 107 NGRPYPNPDVLMLSYTGCYTFMKWFELLREEYKCPTLMLHVPYEGDGHSTKHMRDYIVKQ 166
Query: 175 FDH-AIKQLEELTGKKFDEKKFEDAC---ARANRTAAAWLKSCKYMGYKPSPLSG-FDLF 229
I LE+++G KFD + A+A L+ K PSP+ F
Sbjct: 167 LKEVVIPGLEQVSGVKFDIDRLRQYLRNRAKAEDNLVWRLEQGK--NKPPSPIDAYFGGV 224
Query: 230 NHMADIVAA-RCDEEAAMGFELLADEFEQSIKEGT------STWEYPEEHRILFEGIPCW 282
++ I A R E+A +E++ E + ++ T+ +++R++ EG P W
Sbjct: 225 YYIGPIFTAFRGTEDAVTYYEIVRKEVQNRVENHQGPLTPEGTYFNDQKYRLIVEGPPNW 284
Query: 283 PGLKPLFEPLKDNGVNVTAVVYAPAF-----GFRY--NNVREMAAAYC-KAPCSVCIETG 334
+ ++ D G V A Y GFR+ +N E A YC ++ + T
Sbjct: 285 TNFREFWKMFYDEGAIVVASSYTKVGGLYDQGFRHDPDNPLESLADYCLGCYTNLNLPTR 344
Query: 335 VEWRETMAKENGISGALVNYNRSCKPWSGA----MPEIERRWKEDLGIPVVHFDGDQADE 390
V+ +E G L+N +SC +S M E+ERR G P + D D
Sbjct: 345 VDLLAKYVEEYEADGLLINSIKSCNSFSAGQLMIMKEVERR----TGRPGAFIETDLVDP 400
Query: 391 RNFSTEQYNTRVQGLVEIMQER 412
R FS R++ ++++++
Sbjct: 401 RYFSAANVKNRLESYFQMIEQK 422
>gi|91200822|emb|CAJ73876.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]
Length = 455
Score = 82.8 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 91/376 (24%), Positives = 157/376 (41%), Gaps = 26/376 (6%)
Query: 49 WSSSKFPIELAKAFDLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGYARISLAY 108
W++ P E+ A L E AA A R AE G DIC + R ++ +
Sbjct: 83 WTTMFVPSEILFAMGLYPFCLEIGAALFAGIGQSSRGLIEAESRGVSTDICTFHRAAIGH 142
Query: 109 AAGEPTDARRMPQPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEKV 168
A P+ + + +C+ TK + + I+IDIP+ + E V
Sbjct: 143 AY-----RNIFPRNILQVATSTLCDNNTKTAKLCECLTGKDTIVIDIPY----EEDEYSV 193
Query: 169 DYLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLKSCKYMGYKPSPLSGFDL 228
YL Q + +K LE+ TG+K + E A +N+T L+ + PL G
Sbjct: 194 QYLAKQLEDLVKYLEKTTGRKMRHEALERAFEYSNKTREKILEINELRKDPLCPLKGSSA 253
Query: 229 FNHMADIVAARCDEEAAMGFELLADEFEQSIKEG-TSTWEYPEEHRILFEGIPCWPGLKP 287
M A + LA+E + I E T + + P ++I W LKP
Sbjct: 254 LGFMFPTYLLIGSGLALEFYSSLANELREKIAENKTKSPKIPPTNQIKI----LWLELKP 309
Query: 288 LFE-------PLKDNGVNV---TAVVYAPAFGFRYNNVREMAAAYCKAPCSVCIETGVEW 337
F K+N V T VY + +A + + +E +E
Sbjct: 310 YFNVDFLQNLEEKENVKIVFEETNYVYWDKLDVQ-KPYESLARKHIMNTYNGPLERRIEV 368
Query: 338 RETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQ 397
+ +A+E + G +V + C+ + A+P I++ + +G P + DGD D++N+ Q
Sbjct: 369 AKMLAREYDVDGVVVFSSWGCRRNNAAVPTIKKELNK-IGYPFLSLDGDCVDDKNYMPGQ 427
Query: 398 YNTRVQGLVEIMQERK 413
++TR++G +E+++ R+
Sbjct: 428 FSTRIEGFLEMIRGRR 443
>gi|118743517|ref|ZP_01591520.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Geobacter lovleyi
SZ]
gi|118683525|gb|EAV89921.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Geobacter lovleyi
SZ]
Length = 425
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 85/381 (22%), Positives = 144/381 (37%), Gaps = 26/381 (6%)
Query: 57 ELAKAFDLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGYARISLA-YAAGEPTD 115
EL AF++ + PE + +A L Q AE+ GY +DIC Y + + + G
Sbjct: 44 ELLAAFEIPLFLPEINCLQSAVNGTAQGLLQHAEEQGYPSDICNYLKADVGLHLQGRRLP 103
Query: 116 ARRMPQPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEKVD------ 169
+R+P P L + CN KW E R++++PL + DIP S P D
Sbjct: 104 HKRLPAP-CLAIASTACNTYIKWAEIWQRLYDMPLFVFDIPGSRNPARPSWPGDPGFAAD 162
Query: 170 --YLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLKSCKYMGYKPSPLSGFD 227
Y++ Q I E ++G++ D + A NR A+ + +P+
Sbjct: 163 LAYVMEQVRSLISLCERISGRRLDPDRLSHALDCTNRMGDAFRQMLAMNRQEPACFDAVR 222
Query: 228 LFNHMADIVAARCDEEAAMGFELLADEFEQSIKEGTSTWEYPEE--HRILFEGIPCWPGL 285
+ A EA + + A E I++ E P E R+LF G+PC+P
Sbjct: 223 QGGAYLGVFNAYRGSEAGVRYFRNALEELLQIRQ-RCLREPPAEAPFRLLFAGLPCYPLY 281
Query: 286 KPLFEPLKDNG---VNVTAVVYAPA---FGFRYNNVREMAA------AYCKAPCSVCIET 333
G V T + +A +R++ R + + +
Sbjct: 282 SSFIRMFSTQGGLFVRSTYLQFASGGANLEYRFDTGRPVESFAEGLLLTTREAMDSMFLA 341
Query: 334 GVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNF 393
G E A G + + +SC+ S + + +P + + D D R
Sbjct: 342 GDRLFEAQAACKA-DGVVFHGVKSCRTVSTGLADARLALLSRSSVPTLLLESDMMDRRLI 400
Query: 394 STEQYNTRVQGLVEIMQERKE 414
S Q R+ E ++ R++
Sbjct: 401 SPAQMQNRIDAFFETLRLRRQ 421
>gi|89210740|ref|ZP_01189126.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Halothermothrix
orenii H 168]
gi|89159710|gb|EAR79372.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Halothermothrix
orenii H 168]
Length = 426
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 93/379 (24%), Positives = 158/379 (41%), Gaps = 43/379 (11%)
Query: 47 VGWSSSKFPIELAKAFDLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGYARISL 106
V W S+ P EL A PE A AA + AE+ +D+C R
Sbjct: 67 VIWCSTFVPSELVYALGGVPFMPEVAAGLAAALGVADDFLRQAEEDWISSDLCSIHRCGW 126
Query: 107 AYAAGEPTDARRMPQPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEE 166
T A +P+PD ++ +++C+ K+ + I+ IP +++ P+ P++
Sbjct: 127 GL-----TKAGLLPEPDLIIAASHLCDGAKKYLQQISYYKGIPFYLLETPYH-----PDD 176
Query: 167 KVDYLIGQFDHAIKQL-EELTGKKFDEKKFEDACARANRTAAAWLKSCKYMGYKPSPLSG 225
D+L H IK L EL G K D FE +NR A + + P+P+SG
Sbjct: 177 -ADWLA----HQIKDLVRELGGVKED---FETVFTYSNRAYRAHQRVNQLRKKIPAPMSG 228
Query: 226 FDLFNHMADIVAARCDEEAAMGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGL 285
+ N ++ + A + L E ++ IKE E+HR+L W L
Sbjct: 229 EEAMNLVSMEFMSSGSPAAVNYYRTLEKELKKRIKEKKGVVPR-EKHRLL------WLHL 281
Query: 286 KP-----LFEPLKDNGVNVTAVVYAPAFGFRYNNVR-------EMAAAYCKAPCSVCIET 333
KP +F L N + Y+ + ++ + +M + P +E
Sbjct: 282 KPYYRQEIFTTLARNDAVIAFEEYSQLYWLPLDSTKPYQSLAWKMINHFGWGP----LER 337
Query: 334 GVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNF 393
+E M + I G + + C+ SG +++ ++ GIP ++ DGD D RN+
Sbjct: 338 QLERIRKMVIDYNIDGVIGFSHWGCRQSSGRNGFLKKELQKK-GIPFLNLDGDLVDIRNY 396
Query: 394 STEQYNTRVQGLVEIMQER 412
Q TR+Q +E+++ R
Sbjct: 397 REGQIITRLQAFIEVLESR 415
>gi|153852899|ref|ZP_01994336.1| hypothetical protein DORLON_00318 [Dorea longicatena DSM 13814]
gi|149754541|gb|EDM64472.1| hypothetical protein DORLON_00318 [Dorea longicatena DSM 13814]
Length = 434
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 88/386 (22%), Positives = 157/386 (40%), Gaps = 47/386 (12%)
Query: 55 PIELAKAFDLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPT 114
P E+ + L+ E + +A K Q AE+ G +C Y + + A
Sbjct: 78 PCEILQEAGLHPYNVEGFSCYLSASKAERAFLQQAENTGISETLCSYHKTFIGAA----- 132
Query: 115 DARRMPQPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQ 174
+ +P+P ++ N C+ ++ +A+++++P+ ID+P E+ V Y+ Q
Sbjct: 133 QKKVLPKPKCIVYTNLTCDANLLTFKKLAKMYDVPIFAIDVPMQQN----EDNVQYVADQ 188
Query: 175 FDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLKSCKYMG--YKPSPLSGFDLFNHM 232
+EE TGKK ++ + R+ RT + + K Y P+ L L+ M
Sbjct: 189 LRKLKDFIEECTGKKITDETLTERLRRSKRTLEKFAQYEKESADRYIPADLVT-PLYAGM 247
Query: 233 ADIVAARCDEEAAMGFELLADEFEQSIKEGTST--------WEYPEEHRILFE------G 278
+ + +EE LL D + K+G W ++ + F+ G
Sbjct: 248 TNNLLLGTEEEETYVDRLLNDVKKAPAKKGKKIYWMHTIPFWSDAVKNELCFQEKAQIVG 307
Query: 279 IPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYNNVREMAAAYCKAPCSVCIETGVEWR 338
+P F+P K +VY G + +R IE G+
Sbjct: 308 CELSRVCEPDFDPEKPYEAMARRMVYHALNG---SAIRR-------------IEAGIR-- 349
Query: 339 ETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQY 398
AKE G GA+ + CK GA +R+++E GIP++ DGD D + Q
Sbjct: 350 --HAKETGADGAVWFGHWGCKHTIGAAQLAKRKFEEQ-GIPLLILDGDGCDRSHGGEGQT 406
Query: 399 NTRVQGLVEIMQERKEEKLAKGEEVY 424
+TR+ +E++ +E + EE++
Sbjct: 407 STRLGAFLEMLNTETDENTDRQEELH 432
>gi|153813155|ref|ZP_01965823.1| hypothetical protein RUMOBE_03564 [Ruminococcus obeum ATCC 29174]
gi|149830810|gb|EDM85900.1| hypothetical protein RUMOBE_03564 [Ruminococcus obeum ATCC 29174]
Length = 379
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 86/369 (23%), Positives = 143/369 (38%), Gaps = 31/369 (8%)
Query: 55 PIELAKAFDLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPT 114
P EL + L E+ + A + Q AED G +C Y + + A
Sbjct: 34 PCELIQEAGLYPYNVESFSCYLTASQAERAFLQNAEDSGLSETLCSYHKTFIGAA----- 88
Query: 115 DARRMPQPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQ 174
+ +P+P ++ N C+ + +A +++P+ ID+P T V Y+ Q
Sbjct: 89 EKGLLPKPKCIVYTNLACDANLLTFHRLAEFYHVPVFSIDVPSRQTA----SNVAYVAAQ 144
Query: 175 FDHAIKQLEELTGKKFDEKKFEDACARANRTAAAW--LKSCKYMGYKPSPLSGFDLFNHM 232
+ LE+ TG+ DE + AR T + +S + + PS L L++ M
Sbjct: 145 LRALKRFLEQTTGRLIDEDLLAERVARGRETLEEFEKFQSARADRFIPSDLVS-PLYSGM 203
Query: 233 ADIVAARCDEEAAMGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPL 292
+ + +EE +LL D K+G +H IP W L
Sbjct: 204 TNNILLGTEEEKLYTEKLLKDIKNAPPKKG--------KHIYWMHTIPFWSDAVKEALLL 255
Query: 293 KDN----GVNVTAVVYAPAFGFRYNNVREMAAAY--CKAPCSVCIETGVEWRETMAKENG 346
D+ G ++ V M Y P S IE G+ AK+ G
Sbjct: 256 NDSAQIVGCELSQVADLSVHSEDPYEEMAMRLVYHALNGPISRRIEAGIH----HAKQAG 311
Query: 347 ISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLV 406
GA+ + CK G ++R+ E+ GIP++ DGD D + Q +TR+ +
Sbjct: 312 ADGAVWFNHWGCKHTLGGSRIAKKRF-EEAGIPMLILDGDGCDRSHGGEGQTSTRLGAFL 370
Query: 407 EIMQERKEE 415
E++ + E
Sbjct: 371 EMLGDFDHE 379
>gi|76796295|ref|ZP_00778660.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Thermoanaerobacter
ethanolicus ATCC 33223]
gi|76588332|gb|EAO64739.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Thermoanaerobacter
ethanolicus ATCC 33223]
Length = 416
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 78/372 (20%), Positives = 149/372 (40%), Gaps = 35/372 (9%)
Query: 48 GWSSSKFPIELAKAFDLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGYARISLA 107
W + P E A D+ ++ E +++ + L AE G N +C Y + +
Sbjct: 70 AWVNLFAPSEFLIAMDIKPLFIEAYSSFMSGFFIEDYLVDTAESRGMSNTLCSYHKTFIG 129
Query: 108 YAAGEPTDARRMPQPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEK 167
++ + +P F++ + IC+ ++ +++ H +PL +IDIP+ + D
Sbjct: 130 -----ASELNILKKPKFMMTTSMICDANIPTFKYLSKKHGVPLYIIDIPYKYSKDA---- 180
Query: 168 VDYLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLKSCKYMGYKPS-PLSGF 226
V Y+ Q ++LEE+ +K D K + N+T A + Y G K P F
Sbjct: 181 VVYVKKQLLEVAEKLEEVFNRKLDTDKLREVVKTENKTRALMREYLNYAGEKRFLPTMTF 240
Query: 227 DLFNHMADIVAARCDEEAAMGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLK 286
+++ A V +E +E+L ++ +++ + + I F L
Sbjct: 241 EMYMLFASHVFIG-SKEVLHFYEMLVEDIKRAPERSGKS--------IFF------IHLL 285
Query: 287 PLFEPLKDNGVNVTAVVYAPAFGFRYNNVRE---------MAAAYCKAPCSVCIETGVEW 337
P+FE + N + Y+ + E +A + I V
Sbjct: 286 PMFEKNFKDYFNFNDKFHIAGSDLNYDFLEEIDENDPFKGIAEKLILNSFNGEINRKVAR 345
Query: 338 RETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQ 397
+ ++ G + + CK G I + +LGIP ++ DGD D+RN Q
Sbjct: 346 IRELIEKIKPDGIIQFCHLGCKQSMGGT-FIIKNLASELGIPFLYLDGDCVDKRNNQEGQ 404
Query: 398 YNTRVQGLVEIM 409
TR++ +E++
Sbjct: 405 NRTRLEAFLEML 416
>gi|78043095|ref|YP_360029.1| putative (R)-2-hydroxyglutaryl-CoA dehydratase, alpha subunit
[Carboxydothermus hydrogenoformans Z-2901]
gi|77995210|gb|ABB14109.1| putative (R)-2-hydroxyglutaryl-CoA dehydratase, alpha subunit
[Carboxydothermus hydrogenoformans Z-2901]
Length = 402
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 77/373 (20%), Positives = 152/373 (40%), Gaps = 37/373 (9%)
Query: 48 GWSSSKFPIELAKAFDLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGYARISLA 107
W + P E A D+ ++ E +++ + L AE G N +C Y + +
Sbjct: 56 AWVNIFSPCEFLIALDIKPLFIEAYSSFMSGFFIEDYLIDTAESRGIANTLCSYHKTFIG 115
Query: 108 YAAGEPTDARRMPQPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEK 167
+ + + +P+F+L ++IC+ + +++ N+PL +ID+P+ + +E
Sbjct: 116 -----ANELKILKKPEFMLTTSSICDANVPTFRYLSKKQNVPLYIIDVPYKYS----KEA 166
Query: 168 VDYLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLKSCKYMGYKP--SPLSG 225
V Y+ Q ++ LEE+ +K D K + N+T K Y+ K P++
Sbjct: 167 VAYVKNQLIEMVENLEEVFKRKLDLDKLREVVKIENKTRTLINKYLNYLKEKTLLVPMT- 225
Query: 226 FDLFNHMADIVAARCDEEAAMGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGL 285
F+++ A + E +E+L D+ + + P + +F + L
Sbjct: 226 FEMYMLFASHIFIGSKEMLKF-YEMLLDDIKNAP---------PRSGKSIF-----FVHL 270
Query: 286 KPLFEPLKDNGVNVTAVVYAPA--FGFRY-------NNVREMAAAYCKAPCSVCIETGVE 336
P+FE + N + + F Y + R +A + +E V
Sbjct: 271 LPIFEKNFQDYFNFSNKFHIAGSDLNFDYLDEIDEKDPFRGIAEKLILNTFNGEMERKVT 330
Query: 337 WRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTE 396
+ ++ G + + CK G I + +GIP ++ DGD D+RN
Sbjct: 331 RIRELIEKIKPDGIIQFCHLGCKQSIGGT-FIIKDLATKMGIPFLYLDGDCVDKRNNQVG 389
Query: 397 QYNTRVQGLVEIM 409
Q TR++ +E++
Sbjct: 390 QNRTRLEAFLEML 402
>gi|114843950|ref|ZP_01454408.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Thermoanaerobacter
ethanolicus X514]
gi|114806007|gb|EAU57790.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Thermoanaerobacter
ethanolicus X514]
Length = 416
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 77/372 (20%), Positives = 149/372 (40%), Gaps = 35/372 (9%)
Query: 48 GWSSSKFPIELAKAFDLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGYARISLA 107
W + P E A D+ ++ E +++ + L AE G N +C Y + +
Sbjct: 70 AWVNLFAPSEFLIAMDIKPLFIEAYSSFMSGFFIEDYLVDTAESRGMSNTLCSYHKTFIG 129
Query: 108 YAAGEPTDARRMPQPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEK 167
++ + +P F++ + IC+ ++ +++ H +PL +IDIP+ + D
Sbjct: 130 -----ASELNILKKPKFMMTTSMICDANIPTFKYLSKKHGVPLYIIDIPYKYSKDA---- 180
Query: 168 VDYLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLKSCKYMGYKPS-PLSGF 226
V Y+ Q ++LEE+ +K D K + N+T A + + G K P F
Sbjct: 181 VVYVKKQLLEVAEKLEEVFNRKLDTDKLREVVKTENKTRALMREYLNHAGEKRFLPTMTF 240
Query: 227 DLFNHMADIVAARCDEEAAMGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLK 286
+++ A V +E +E+L ++ +++ + + I F L
Sbjct: 241 EMYMLFASHVFIG-SKEVLHFYEMLVEDIKRAPERSGKS--------IFF------IHLL 285
Query: 287 PLFEPLKDNGVNVTAVVYAPAFGFRYNNVRE---------MAAAYCKAPCSVCIETGVEW 337
P+FE + N + Y+ + E +A + I V
Sbjct: 286 PMFEKNFKDYFNFNDKFHIAGSDLNYDFLEEIDENDPFKGIAEKLILNSFNGEINRKVAR 345
Query: 338 RETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQ 397
+ ++ G + + CK G I + +LGIP ++ DGD D+RN Q
Sbjct: 346 IRELIEKIKPDGIIQFCHLGCKQSMGGT-FIIKNLASELGIPFLYLDGDCVDKRNNQEGQ 404
Query: 398 YNTRVQGLVEIM 409
TR++ +E++
Sbjct: 405 NRTRLEAFLEML 416
>gi|20807575|ref|NP_622746.1| 2-hydroxyglutaryl-CoA dehydratase, subunit alpha
[Thermoanaerobacter tengcongensis MB4]
gi|20516112|gb|AAM24350.1| 2-hydroxyglutaryl-CoA dehydratase, subunit alpha
[Thermoanaerobacter tengcongensis MB4]
Length = 416
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 76/372 (20%), Positives = 150/372 (40%), Gaps = 35/372 (9%)
Query: 48 GWSSSKFPIELAKAFDLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGYARISLA 107
W + P E A D+ ++ E +++ + L AE G N +C Y + +
Sbjct: 70 AWVNLFAPSEFLIAMDIKPLFIEAYSSFMSGFFIEDYLIDTAESRGMSNTLCSYHKTFIG 129
Query: 108 YAAGEPTDARRMPQPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEK 167
++ + +P F++ + IC+ ++ +++ H +PL +IDIP+ + +
Sbjct: 130 -----ASELNILKKPKFMMTTSMICDANIPTFKYLSKKHGVPLYIIDIPYKYS----KNA 180
Query: 168 VDYLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLKSCKYMGYKP-SPLSGF 226
V Y+ Q ++L E+ +K D K + N+T A + Y G K P F
Sbjct: 181 VMYVKKQLLEVAEKLGEVFNRKLDIDKLREVVKTENKTRALMREYLNYAGEKRFIPTMTF 240
Query: 227 DLFNHMADIVAARCDEEAAMGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLK 286
+++ A V +E +E+L ++ +++ + + I F L
Sbjct: 241 EMYMLFASHVFIG-SKEVLHFYEMLVEDIKRAPERSGKS--------IFF------IHLL 285
Query: 287 PLFEPLKDNGVNVTAVVYAPAFGFRYNNVRE---------MAAAYCKAPCSVCIETGVEW 337
P+FE + N + + Y+ + E +A + I V
Sbjct: 286 PIFEKNFKDYFNFSDKFHIAGSDLNYDFLDEIDENDPFKGIAEKLILNSFNGEINRRVAR 345
Query: 338 RETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQ 397
+ + ++ G + + CK G I + +LGIP ++ DGD D+RN Q
Sbjct: 346 IKELIEKIKPDGIIQFCHLGCKQSMGGT-FIIKNLASELGIPFLYLDGDCVDKRNNQEGQ 404
Query: 398 YNTRVQGLVEIM 409
TR++ +E++
Sbjct: 405 NRTRLEAFLEML 416
>gi|39997614|ref|NP_953565.1| (R)-2-hydroxyglutaryl-CoA dehydratase beta-subunit, putative
[Geobacter sulfurreducens PCA]
gi|39984506|gb|AAR35892.1| (R)-2-hydroxyglutaryl-CoA dehydratase beta-subunit, putative
[Geobacter sulfurreducens PCA]
Length = 387
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 74/302 (24%), Positives = 128/302 (42%), Gaps = 31/302 (10%)
Query: 123 DFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQL 182
DFLL C+ K YE + + P+ ++ +P E +DY + + +L
Sbjct: 96 DFLLA-ETTCDGKKKMYELLGELK--PIHVMQLPQIQD----EAALDYWLMEIGRLKTRL 148
Query: 183 EELTGKKFDEKKFEDACARAN---RTAAAWLKSCKYMGYKPSPLSGFDLFNHMADIVAAR 239
E G + +K +A N R+ A CK + PSP+SG DL + +
Sbjct: 149 EREFGVRITDKALTEAIRLMNEERRSLQALQDVCKAI---PSPISGLDLLTVLHN-RGFS 204
Query: 240 CDEEAAMGF-ELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVN 298
D AA+ + A E Q G S + RIL G+P G + L ++++G +
Sbjct: 205 VDRRAAIELVDRFAAELRQMAAAGISPFT-ESTPRILLTGVPVGVGSEKLIRIIEESGAS 263
Query: 299 VTAVVYAPAFGFRYNNVRE-------MAAAYCKAPCSVCIE--TG-VEWRETMAKENGIS 348
V + A+ + VRE +A Y K PCS C+ TG +E E + +E +
Sbjct: 264 VVCLESCGAYK-KVEQVREGGDPLRAIAERYLKVPCS-CMSPNTGRLELVERLTREFRVD 321
Query: 349 GALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEI 408
G + C ++ +++ ++ G+P + + D ++ T Q RV+ +EI
Sbjct: 322 GVVDLTWLGCHTYAVESSVLKKHLQQRTGLPFLQIETDYSES---DTGQLKVRVEAFLEI 378
Query: 409 MQ 410
+
Sbjct: 379 VH 380
>gi|114565967|ref|YP_753121.1| (R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit, putative
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
gi|114336902|gb|ABI67750.1| (R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit, putative
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 424
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 79/310 (25%), Positives = 123/310 (39%), Gaps = 40/310 (12%)
Query: 122 PDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQ 181
PD + N C+ K +E +A +P+ +IDIP E V + I
Sbjct: 135 PD-MYVAENTCDGKKKAWEILA--GEVPMHIIDIPQMKR----ERDVAAFAAEIRDFIGV 187
Query: 182 LEELTGKKFDEKKFEDACARANRTAAAWLKSCKYMGYKPSPLSGFDLFNHMADIVAARCD 241
+E++TGKK + + +A N A + P P+SG D + I
Sbjct: 188 VEKVTGKKINAESLGEAIKLINNKRRALQRVYNARKASPVPISGKDAL-LVTQINFYDDP 246
Query: 242 EEAAMGFELLADEFEQSIKEGTSTWEYPEEH-RILFEG----IPCWPGLKPLFEPLKDNG 296
AA LADE EQ I GT +PE RI+ G IP W L + E L
Sbjct: 247 ARAAQMANNLADELEQRINNGTGV--FPENAPRIMISGTPMAIPNWK-LHHIVESL---- 299
Query: 297 VNVTAVVYAPAFGFRY-------------NNVREMAAAYCKAPCSVCIETGVEWRET--M 341
VV G RY +R +A Y K C+ + +
Sbjct: 300 -GAAIVVEESCTGTRYFENLVDETASTLDEQIRALAERYMKTNCACFTPNSARIDDIIRL 358
Query: 342 AKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTR 401
A E + G + + C +S I++ E +P++H + D + E++F EQ TR
Sbjct: 359 ADEYKVDGIIDTNLQFCNLYSTESYLIKQVMTER-NLPIIHIETDYS-EQDF--EQLRTR 414
Query: 402 VQGLVEIMQE 411
V+ +E++++
Sbjct: 415 VEAFLEMLRK 424
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.317 0.134 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,766,481,086
Number of Sequences: 5470121
Number of extensions: 77456237
Number of successful extensions: 178763
Number of sequences better than 1.0e-05: 50
Number of HSP's better than 0.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 178636
Number of HSP's gapped (non-prelim): 64
length of query: 442
length of database: 1,894,087,724
effective HSP length: 136
effective length of query: 306
effective length of database: 1,150,151,268
effective search space: 351946288008
effective search space used: 351946288008
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)