BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= FNP_0227
(442 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148322792|gb|EDK88042.1| (R)-2-hydroxyglutaryl-CoA dehyd... 915 0.0
gi|34763337|ref|ZP_00144291.1| (R)-2-hydroxyglutaryl-CoA de... 902 0.0
gi|19703552|ref|NP_603114.1| (R)-2-hydroxyglutaryl-CoA dehy... 902 0.0
gi|16417589|gb|AAL18810.1|AF420489_4 R-phenyllactate dehydr... 420 e-115
gi|148381233|ref|YP_001255774.1| R-phenyllactate dehydratas... 419 e-115
gi|153938498|ref|YP_001392635.1| R-phenyllactate dehydratas... 419 e-115
gi|123112|sp|P11569|HGDA_ACIFE (R)-2-hydroxyglutaryl-CoA de... 418 e-115
gi|4883832|gb|AAD31676.1| (R)-2-hydroxyglutaryl-CoA dehydra... 414 e-114
gi|126697966|ref|YP_001086863.1| subunit of oxygen-sensitiv... 350 1e-94
gi|145956308|ref|ZP_01805305.1| hypothetical protein CdifQ_... 350 1e-94
gi|153938029|ref|YP_001391492.1| putative R-2-hydroxyglutar... 346 2e-93
gi|148380152|ref|YP_001254693.1| subunit of oxygen-sensitiv... 345 5e-93
gi|118444701|ref|YP_878442.1| R-phenyllactate dehydratase m... 280 1e-73
gi|11499540|ref|NP_070782.1| 2-hydroxyglutaryl-CoA dehydrat... 196 3e-48
gi|109645397|ref|ZP_01369317.1| 2-hydroxyglutaryl-CoA dehyd... 189 4e-46
gi|89895061|ref|YP_518548.1| hypothetical protein DSY2315 [... 186 2e-45
gi|121543456|ref|ZP_01675123.1| (R)-2-hydroxyglutaryl-CoA d... 183 3e-44
gi|78043965|ref|YP_359698.1| (R)-2-hydroxyglutaryl-CoA dehy... 180 1e-43
gi|121542310|ref|ZP_01674043.1| 2-hydroxyglutaryl-CoA dehyd... 164 1e-38
gi|110598990|ref|ZP_01387232.1| 2-hydroxyglutaryl-CoA dehyd... 141 9e-32
gi|62484827|emb|CAI78844.1| 2-hydroxyglutaryl-coa dehydrata... 139 3e-31
gi|145619329|ref|ZP_01775380.1| 2-hydroxyglutaryl-CoA dehyd... 134 9e-30
gi|90422542|ref|YP_530912.1| Benzoyl-CoA reductase, subunit... 122 4e-26
gi|115522634|ref|YP_779545.1| benzoyl-CoA reductase, subuni... 121 1e-25
gi|62484850|emb|CAI78867.1| benzoyl-CoA reductase, beta sub... 119 3e-25
gi|91976016|ref|YP_568675.1| Benzoyl-CoA reductase, subunit... 118 9e-25
gi|39933735|ref|NP_946011.1| benzoyl-CoA reductase subunit ... 111 9e-23
gi|3724169|emb|CAA12248.1| B-subunit of benzoyl-CoA reducta... 107 1e-21
gi|56478437|ref|YP_160026.1| benzoyl CoA reductase subunit ... 104 1e-20
gi|46202064|ref|ZP_00208366.1| COG1775: Benzoyl-CoA reducta... 103 2e-20
gi|83311239|ref|YP_421503.1| B-subunit of benzoyl-CoA reduc... 103 2e-20
gi|45649068|gb|AAQ08807.1| BzdO [Azoarcus sp. CIB] 103 3e-20
gi|56475814|ref|YP_157403.1| benzoyl CoA reductase subunit ... 103 3e-20
gi|18369656|emb|CAD21629.1| benzoyl CoA reductase subunit [... 100 2e-19
gi|51850068|dbj|BAD42372.1| putative B-subunit of benzoyl-C... 98 1e-18
gi|91200822|emb|CAJ73876.1| hypothetical protein [Candidatu... 83 3e-14
gi|118743517|ref|ZP_01591520.1| 2-hydroxyglutaryl-CoA dehyd... 82 1e-13
gi|89210740|ref|ZP_01189126.1| 2-hydroxyglutaryl-CoA dehydr... 81 1e-13
gi|153852899|ref|ZP_01994336.1| hypothetical protein DORLON... 73 4e-11
gi|153813155|ref|ZP_01965823.1| hypothetical protein RUMOBE... 69 7e-10
gi|76796295|ref|ZP_00778660.1| 2-hydroxyglutaryl-CoA dehydr... 68 1e-09
gi|78043095|ref|YP_360029.1| putative (R)-2-hydroxyglutaryl... 67 3e-09
gi|114843950|ref|ZP_01454408.1| 2-hydroxyglutaryl-CoA dehyd... 66 5e-09
gi|39997614|ref|NP_953565.1| (R)-2-hydroxyglutaryl-CoA dehy... 64 3e-08
gi|20807575|ref|NP_622746.1| 2-hydroxyglutaryl-CoA dehydrat... 62 7e-08
gi|114565967|ref|YP_753121.1| (R)-2-hydroxyglutaryl-CoA deh... 56 5e-06
>gi|148322792|gb|EDK88042.1| (R)-2-hydroxyglutaryl-CoA dehydratase alpha subunit [Fusobacterium
nucleatum subsp. polymorphum ATCC 10953]
Length = 442
Score = 915 bits (2365), Expect = 0.0, Method: Composition-based stats.
Identities = 442/442 (100%), Positives = 442/442 (100%)
Query: 1 MAGKMEKLPNKKPRPIEGHKPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAK 60
MAGKMEKLPNKKPRPIEGHKPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAK
Sbjct: 1 MAGKMEKLPNKKPRPIEGHKPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAK 60
Query: 61 AFDLNVVYPENHAASAAAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMP 120
AFDLNVVYPENHAASAAAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMP
Sbjct: 61 AFDLNVVYPENHAASAAAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMP 120
Query: 121 QPDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIK 180
QPDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIK
Sbjct: 121 QPDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIK 180
Query: 181 QLEELTGKKFDEKKFEDACARANRTAAAWLKACKYMGYKPSPLSGFDLFNHMADIVAARC 240
QLEELTGKKFDEKKFEDACARANRTAAAWLKACKYMGYKPSPLSGFDLFNHMADIVAARC
Sbjct: 181 QLEELTGKKFDEKKFEDACARANRTAAAWLKACKYMGYKPSPLSGFDLFNHMADIVAARC 240
Query: 241 DEEAAIGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVT 300
DEEAAIGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVT
Sbjct: 241 DEEAAIGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVT 300
Query: 301 AVVYAPAFGFRYHNIREMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKP 360
AVVYAPAFGFRYHNIREMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKP
Sbjct: 301 AVVYAPAFGFRYHNIREMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKP 360
Query: 361 WSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEKLAKG 420
WSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEKLAKG
Sbjct: 361 WSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEKLAKG 420
Query: 421 EEVYTNFENTKETDWSKPTLKH 442
EEVYTNFENTKETDWSKPTLKH
Sbjct: 421 EEVYTNFENTKETDWSKPTLKH 442
>gi|34763337|ref|ZP_00144291.1| (R)-2-hydroxyglutaryl-CoA dehydratase alpha-subunit [Fusobacterium
nucleatum subsp. vincentii ATCC 49256]
gi|27886988|gb|EAA24106.1| (R)-2-hydroxyglutaryl-CoA dehydratase alpha-subunit [Fusobacterium
nucleatum subsp. vincentii ATCC 49256]
Length = 442
Score = 902 bits (2332), Expect = 0.0, Method: Composition-based stats.
Identities = 434/442 (98%), Positives = 440/442 (99%)
Query: 1 MAGKMEKLPNKKPRPIEGHKPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAK 60
MAGKMEKLPNKKPRPIEGHKPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAK
Sbjct: 1 MAGKMEKLPNKKPRPIEGHKPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAK 60
Query: 61 AFDLNVVYPENHAASAAAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMP 120
AFDLNVVYPENHAAS AAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTD+RRMP
Sbjct: 61 AFDLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDSRRMP 120
Query: 121 QPDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIK 180
QPDFLLCCNNICNMMTKWYENIAR+HNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIK
Sbjct: 121 QPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIK 180
Query: 181 QLEELTGKKFDEKKFEDACARANRTAAAWLKACKYMGYKPSPLSGFDLFNHMADIVAARC 240
QLEELTGKKFDEKKFEDACARANRTAAAWLK+CKYMGYKPSPLSGFDLFNHMADIVAARC
Sbjct: 181 QLEELTGKKFDEKKFEDACARANRTAAAWLKSCKYMGYKPSPLSGFDLFNHMADIVAARC 240
Query: 241 DEEAAIGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVT 300
DEEAAIGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVT
Sbjct: 241 DEEAAIGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVT 300
Query: 301 AVVYAPAFGFRYHNIREMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKP 360
AVVYAPAFGFRY+N+REMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKP
Sbjct: 301 AVVYAPAFGFRYNNVREMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKP 360
Query: 361 WSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEKLAKG 420
WSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEKLAKG
Sbjct: 361 WSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEKLAKG 420
Query: 421 EEVYTNFENTKETDWSKPTLKH 442
EEVYTNFENTKETDWSK T+KH
Sbjct: 421 EEVYTNFENTKETDWSKETIKH 442
>gi|19703552|ref|NP_603114.1| (R)-2-hydroxyglutaryl-CoA dehydratase alpha-subunit [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|19713648|gb|AAL94413.1| (R)-2-hydroxyglutaryl-CoA dehydratase alpha-subunit [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 442
Score = 902 bits (2331), Expect = 0.0, Method: Composition-based stats.
Identities = 434/442 (98%), Positives = 440/442 (99%)
Query: 1 MAGKMEKLPNKKPRPIEGHKPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAK 60
MAGKMEKLPNKKPRPIEGHKPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAK
Sbjct: 1 MAGKMEKLPNKKPRPIEGHKPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAK 60
Query: 61 AFDLNVVYPENHAASAAAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMP 120
AFDLNVVYPENHAAS AAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMP
Sbjct: 61 AFDLNVVYPENHAASTAAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMP 120
Query: 121 QPDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIK 180
QPDFLLCCNNICNMMTKWYENIAR+HNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIK
Sbjct: 121 QPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIK 180
Query: 181 QLEELTGKKFDEKKFEDACARANRTAAAWLKACKYMGYKPSPLSGFDLFNHMADIVAARC 240
QLEELTGKKFDEKKFEDACARANRTAAAWLK+CKYMGYKPSPLSGFDLFNHMADIVAARC
Sbjct: 181 QLEELTGKKFDEKKFEDACARANRTAAAWLKSCKYMGYKPSPLSGFDLFNHMADIVAARC 240
Query: 241 DEEAAIGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVT 300
DEEAA+GFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVT
Sbjct: 241 DEEAAMGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVT 300
Query: 301 AVVYAPAFGFRYHNIREMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKP 360
AVVYAPAFGFRY+N+REMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKP
Sbjct: 301 AVVYAPAFGFRYNNVREMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKP 360
Query: 361 WSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEKLAKG 420
WSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEKLAKG
Sbjct: 361 WSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEKLAKG 420
Query: 421 EEVYTNFENTKETDWSKPTLKH 442
EEVYTNFENTKETDWSK T+KH
Sbjct: 421 EEVYTNFENTKETDWSKETIKH 442
>gi|16417589|gb|AAL18810.1|AF420489_4 R-phenyllactate dehydratase medium subunit [Clostridium sporogenes]
Length = 407
Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats.
Identities = 204/395 (51%), Positives = 270/395 (68%)
Query: 20 KPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASAAAK 79
K A LR + K Y A EAK+RGE VGW +S FP E+A + VVYPENHAA+ AA+
Sbjct: 11 KKAKHYLREITAKHYKEALEAKERGEKVGWCASNFPQEIATTLGVKVVYPENHAAAVAAR 70
Query: 80 KDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMPQPDFLLCCNNICNMMTKWY 139
+G +C+ AE MG+ ND+CGYAR++LA ++ + +P PDF+LCCNNICN M KWY
Sbjct: 71 GNGQNMCEHAEAMGFSNDVCGYARVNLAVMDIGHSEDQPIPMPDFVLCCNNICNQMIKWY 130
Query: 140 ENIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDAC 199
E+IA+ +IP+I+IDIP++ ++++ Y+ QFD AIKQLEE+TGKK+DE KFE+
Sbjct: 131 EHIAKTLDIPMILIDIPYNTENTVSQDRIKYIRAQFDDAIKQLEEITGKKWDENKFEEVM 190
Query: 200 ARANRTAAAWLKACKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAIGFELLADEFEQSI 259
+ +A WL+A Y YKPSP SGFDLFNHMA V AR +EAA F++LADE+E+++
Sbjct: 191 KISQESAKQWLRAASYAKYKPSPFSGFDLFNHMAVAVCARGTQEAADAFKMLADEYEENV 250
Query: 260 KEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYHNIREMA 319
K G ST+ E+ RILFEGI CWP L+ L + G+NVTA VYA AFG Y N+ E+
Sbjct: 251 KTGKSTYRGEEKQRILFEGIACWPYLRHKLTKLSEYGMNVTATVYAEAFGVIYENMDELM 310
Query: 320 AAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIP 379
AAY K P S+ E ++ R GA+++ NRSCK WSG + E+ RR +++ GIP
Sbjct: 311 AAYNKVPNSISFENALKMRLNAVTSTNTEGAVIHINRSCKLWSGFLYELARRLEKETGIP 370
Query: 380 VVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKE 414
VV FDGDQAD RNFS QY+TR+QGL E+M +KE
Sbjct: 371 VVSFDGDQADPRNFSEAQYDTRIQGLNEVMVAKKE 405
>gi|148381233|ref|YP_001255774.1| R-phenyllactate dehydratase medium subunit [Clostridium botulinum A
str. ATCC 3502]
gi|153931140|ref|YP_001385608.1| R-phenyllactate dehydratase, B subunit [Clostridium botulinum A
str. ATCC 19397]
gi|153936470|ref|YP_001389014.1| R-phenyllactate dehydratase, B subunit [Clostridium botulinum A
str. Hall]
gi|148290717|emb|CAL84848.1| R-phenyllactate dehydratase medium subunit [Clostridium botulinum A
str. ATCC 3502]
gi|152927184|gb|ABS32684.1| R-phenyllactate dehydratase, B subunit [Clostridium botulinum A
str. ATCC 19397]
gi|152932384|gb|ABS37883.1| R-phenyllactate dehydratase, B subunit [Clostridium botulinum A
str. Hall]
Length = 407
Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats.
Identities = 208/396 (52%), Positives = 273/396 (68%), Gaps = 2/396 (0%)
Query: 20 KPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASAAAK 79
K A LR + K Y A EAK+RGE VGW +S FP E+A + VVYPENHAA+ AA+
Sbjct: 11 KKAKHYLREITAKHYKEALEAKERGEKVGWCASNFPQEIATTLGIKVVYPENHAAAVAAR 70
Query: 80 KDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMPQPDFLLCCNNICNMMTKWY 139
+G +C+ AE MG+ ND+CGYAR++LA ++ + +P PDF+LCCNNICN M KWY
Sbjct: 71 GNGQNMCEHAEAMGFSNDVCGYARVNLAVMDIGHSEDQPIPMPDFVLCCNNICNQMIKWY 130
Query: 140 ENIARMHNIPLIMIDIPFSNTVDT-PEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDA 198
E+IA+ +IP+I+IDIP+ NT DT ++++ Y+ QFD+AIKQLEE+TGKK+DE KFE+
Sbjct: 131 EHIAKTLDIPMILIDIPY-NTEDTISQDRIKYIRAQFDNAIKQLEEITGKKWDEDKFEEV 189
Query: 199 CARANRTAAAWLKACKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAIGFELLADEFEQS 258
+ +A WL+A Y YKPSP SGFDLFNHMA V AR +EAA F++LADE+E++
Sbjct: 190 MKISQESAKQWLRAASYAKYKPSPFSGFDLFNHMAVAVCARGTQEAADAFKMLADEYEEN 249
Query: 259 IKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYHNIREM 318
+K G ST+ E+ RILFEGI CWP L+ L + G+NVTA VYA AFG Y N E+
Sbjct: 250 VKTGKSTYRGEEKQRILFEGIACWPYLRHKLTKLSEYGMNVTATVYAEAFGVIYENTDEL 309
Query: 319 AAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGI 378
AAY K P S+ E ++ R GA+++ NRSCK WSG + E+ RR +++ GI
Sbjct: 310 MAAYNKVPNSISFENALKMRLNAVTSTNTEGAVIHINRSCKLWSGFLYELGRRLEKETGI 369
Query: 379 PVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKE 414
PVV FDGDQAD RNFS QY+TR+QGL E+M +KE
Sbjct: 370 PVVSFDGDQADPRNFSEAQYDTRIQGLNEVMVAKKE 405
>gi|153938498|ref|YP_001392635.1| R-phenyllactate dehydratase, B subunit [Clostridium botulinum F
str. Langeland]
gi|152934394|gb|ABS39892.1| R-phenyllactate dehydratase, B subunit [Clostridium botulinum F
str. Langeland]
Length = 407
Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats.
Identities = 208/396 (52%), Positives = 273/396 (68%), Gaps = 2/396 (0%)
Query: 20 KPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASAAAK 79
K A LR + K Y A EAK+RGE VGW +S FP E+A + VVYPENHAA+ AA+
Sbjct: 11 KKAKHYLREITAKHYKEALEAKERGEKVGWCASNFPQEIATTLGVKVVYPENHAAAVAAR 70
Query: 80 KDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMPQPDFLLCCNNICNMMTKWY 139
+G +C+ AE MG+ ND+CGYAR++LA ++ + +P PDF+LCCNNICN M KWY
Sbjct: 71 GNGQNMCEHAEAMGFSNDVCGYARVNLAVMDIGHSEDQPIPMPDFVLCCNNICNQMIKWY 130
Query: 140 ENIARMHNIPLIMIDIPFSNTVDT-PEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDA 198
E+IA+ +IP+I+IDIP+ NT DT ++++ Y+ QFD+AIKQLEE+TGKK+DE KFE+
Sbjct: 131 EHIAKTLDIPMILIDIPY-NTEDTISQDRIKYIRAQFDNAIKQLEEITGKKWDEDKFEEV 189
Query: 199 CARANRTAAAWLKACKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAIGFELLADEFEQS 258
+ +A WL+A Y YKPSP SGFDLFNHMA V AR +EAA F++LADE+E++
Sbjct: 190 MKISQESAKQWLRAASYAKYKPSPFSGFDLFNHMAVAVCARGTQEAADAFKMLADEYEEN 249
Query: 259 IKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYHNIREM 318
+K G ST+ E+ RILFEGI CWP L+ L + G+NVTA VYA AFG Y N E+
Sbjct: 250 VKTGKSTYRGEEKQRILFEGIACWPYLRHKLTKLSEYGMNVTATVYAEAFGVIYENTDEL 309
Query: 319 AAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGI 378
AAY K P S+ E ++ R GA+++ NRSCK WSG + E+ RR +++ GI
Sbjct: 310 MAAYNKVPNSISFENALKMRLNAVTSTNTEGAVIHINRSCKLWSGFLYELGRRLEKETGI 369
Query: 379 PVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKE 414
PVV FDGDQAD RNFS QY+TR+QGL E+M +KE
Sbjct: 370 PVVSFDGDQADPRNFSEAQYDTRIQGLNEVMVAKKE 405
>gi|123112|sp|P11569|HGDA_ACIFE (R)-2-hydroxyglutaryl-CoA dehydratase subunit alpha
gi|38800|emb|CAA32465.1| hgdA protein precursor [Acidaminococcus fermentans]
Length = 477
Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats.
Identities = 192/298 (64%), Positives = 229/298 (76%)
Query: 119 MPQPDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHA 178
MP PDF+LCCNNICN MTKWYE+IAR HNIPLIMID+P++ E V Y+ Q D A
Sbjct: 178 MPMPDFVLCCNNICNCMTKWYEDIARRHNIPLIMIDVPYNEFDHVNEANVKYIRSQLDTA 237
Query: 179 IKQLEELTGKKFDEKKFEDACARANRTAAAWLKACKYMGYKPSPLSGFDLFNHMADIVAA 238
I+Q+EE+TGKKFDE KFE C ANRTA AWLK C Y+ YKP+P +GFDLFNHMAD+V A
Sbjct: 238 IRQMEEITGKKFDEDKFEQCCQNANRTAKAWLKVCDYLQYKPAPFNGFDLFNHMADVVTA 297
Query: 239 RCDEEAAIGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVN 298
R EAA FELLA E EQ +KEGT+T + E+HRI+FEGIPCWP L LF+PLK NG+N
Sbjct: 298 RGRVEAAEAFELLAKELEQHVKEGTTTAPFKEQHRIMFEGIPCWPKLPNLFKPLKANGLN 357
Query: 299 VTAVVYAPAFGFRYHNIREMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSC 358
+T VVYAPAFGF Y+N+ E+ AYCKAP SV IE GV WRE + ++N + G LV+YNRSC
Sbjct: 358 ITGVVYAPAFGFVYNNLDELVKAYCKAPNSVSIEQGVAWREGLIRDNKVDGVLVHYNRSC 417
Query: 359 KPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEK 416
KPWSG MPE++RR+ +D+GIP FDGDQAD RNF+ QY TRVQGLVE M+ E+K
Sbjct: 418 KPWSGYMPEMQRRFTKDMGIPTAGFDGDQADPRNFNAAQYETRVQGLVEAMEANDEKK 475
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 63/91 (69%), Positives = 71/91 (78%)
Query: 21 PAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASAAAKK 80
P LR VV+KVY E K+RGE VGWSSSKFP ELA++F L+V YPEN AA AA +
Sbjct: 7 PGVQALRDVVEKVYRELREPKERGEKVGWSSSKFPCELAESFRLHVGYPENQAAGIAANR 66
Query: 81 DGLRLCQAAEDMGYDNDICGYARISLAYAAG 111
DG +CQAAED+GYDNDICGYARISLAYAAG
Sbjct: 67 DGEVMCQAAEDIGYDNDICGYARISLAYAAG 97
>gi|4883832|gb|AAD31676.1| (R)-2-hydroxyglutaryl-CoA dehydratase component D [Clostridium
symbiosum]
Length = 480
Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats.
Identities = 208/310 (67%), Positives = 249/310 (80%)
Query: 110 AGEPTDARRMPQPDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEKVD 169
A P R+PQPDF+LCCNNICN MTKWYENIARM N+PLIMIDIP++NTV+ ++ V
Sbjct: 171 AISPIRQMRIPQPDFVLCCNNICNCMTKWYENIARMCNVPLIMIDIPYNNTVEVHDDNVK 230
Query: 170 YLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLKACKYMGYKPSPLSGFDLF 229
Y+ QFD AIKQLEELTGKKFDEKKFE AC+ ANRTA AWLK C Y+ YKP+P SGFDLF
Sbjct: 231 YVRAQFDKAIKQLEELTGKKFDEKKFEKACSNANRTAQAWLKVCDYLQYKPAPYSGFDLF 290
Query: 230 NHMADIVAARCDEEAAIGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLF 289
NHMAD+V AR EAA FELLAD+ E+++K+G +T +PE++R++FEGIPCWP L LF
Sbjct: 291 NHMADVVTARARVEAAEAFELLADDLEETVKKGETTTPFPEKYRVMFEGIPCWPKLPNLF 350
Query: 290 EPLKDNGVNVTAVVYAPAFGFRYHNIREMAAAYCKAPCSVCIETGVEWRETMAKENGISG 349
+PLK++GVNVTAVVYAPAFGF Y+NI EMA AY KAP SVCIE GV+WRE + ++N + G
Sbjct: 351 KPLKEHGVNVTAVVYAPAFGFVYNNIDEMARAYYKAPNSVCIEQGVDWREGICRDNKVDG 410
Query: 350 ALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIM 409
LV+YNRSCKPWSG M E++RR+ EDLG+P FDGDQAD RNF+ QY TRVQGLVE M
Sbjct: 411 VLVHYNRSCKPWSGYMAEMQRRFTEDLGVPCAGFDGDQADPRNFNAAQYETRVQGLVEAM 470
Query: 410 QERKEEKLAK 419
+ K+ K AK
Sbjct: 471 EANKQAKEAK 480
Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats.
Identities = 67/91 (73%), Positives = 72/91 (79%)
Query: 21 PAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASAAAKK 80
P LR VVD V+ A EAK RGELVGWSSSKFP ELA AFDLNV+YPEN AA AA +
Sbjct: 7 PGVLALRKVVDDVHKEAREAKARGELVGWSSSKFPCELAAAFDLNVMYPENQAAGIAANR 66
Query: 81 DGLRLCQAAEDMGYDNDICGYARISLAYAAG 111
G +CQAAED+GYDNDICGYARISLAYAAG
Sbjct: 67 YGEMMCQAAEDLGYDNDICGYARISLAYAAG 97
>gi|126697966|ref|YP_001086863.1| subunit of oxygen-sensitive 2-hydroxyisocaproyl-CoA dehydratase
[Clostridium difficile 630]
gi|115249403|emb|CAJ67218.1| subunit of oxygen-sensitive 2-hydroxyisocaproyl-CoA dehydratase
[Clostridium difficile 630]
Length = 410
Score = 350 bits (898), Expect = 1e-94, Method: Composition-based stats.
Identities = 185/405 (45%), Positives = 252/405 (62%), Gaps = 5/405 (1%)
Query: 20 KPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASAAAK 79
K A ++ ++ + YANA++AK+ G VGWS+S FP ELA+ FDLNV+YPEN AA AAK
Sbjct: 7 KEARVVINDLLAEQYANAFKAKEEGRPVGWSTSVFPQELAEVFDLNVLYPENQAAGVAAK 66
Query: 80 KDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMPQPDFLLCCNNICNMMTKWY 139
K L LC+ AE GY D+C YAR + +A MP PDFLLCCNNICN + KWY
Sbjct: 67 KGSLELCEIAESKGYSIDLCAYARTNFGLLENGGCEALDMPAPDFLLCCNNICNQVIKWY 126
Query: 140 ENIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDAC 199
ENI+R +IPLIMID F+N + + ++DY+ QF+ AIKQLE ++GKKFD KKFE+
Sbjct: 127 ENISRELDIPLIMIDTTFNNEDEVTQSRIDYIKAQFEEAIKQLEIISGKKFDPKKFEEVM 186
Query: 200 ARANRTAAAWLKACKY-MGYKPSPLSGFDLFNHMADIVAARCDEEAAIGFELLADEFEQS 258
+ W + PSP++GFDLF +MA IV AR +E F+LL +E E +
Sbjct: 187 KISAENGRLWKYSMSLPADSSPSPMNGFDLFTYMAVIVCARGKKETTEAFKLLIEELEDN 246
Query: 259 IKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRY--HNIR 316
+K G S++ E++RI+ EGIPCWP + + L GVN+T VY A+ +Y +++
Sbjct: 247 MKTGKSSFRGEEKYRIMMEGIPCWPYIGYKMKTLAKFGVNMTGSVYPHAWALQYEVNDLD 306
Query: 317 EMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDL 376
MA AY +V ++ ++R E GA + NRSCK S E++RR E+
Sbjct: 307 GMAVAYSTMFNNVNLDRMTKYRVDSLVEGKCDGAFYHMNRSCKLMSLIQYEMQRRAAEET 366
Query: 377 GIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEKLAKGE 421
G+P FDGDQAD R F+ Q+ TR+QGLVE+M+ERK KL +GE
Sbjct: 367 GLPYAGFDGDQADPRAFTNAQFETRIQGLVEVMEERK--KLNRGE 409
>gi|145956308|ref|ZP_01805305.1| hypothetical protein CdifQ_04000418 [Clostridium difficile
QCD-32g58]
gi|54781342|gb|AAV40819.1| 2-hydroxyisocaproyl-CoA dehydratase [Clostridium difficile]
Length = 408
Score = 350 bits (898), Expect = 1e-94, Method: Composition-based stats.
Identities = 185/405 (45%), Positives = 252/405 (62%), Gaps = 5/405 (1%)
Query: 20 KPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASAAAK 79
K A ++ ++ + YANA++AK+ G VGWS+S FP ELA+ FDLNV+YPEN AA AAK
Sbjct: 5 KEARVVINDLLAEQYANAFKAKEEGRPVGWSTSVFPQELAEVFDLNVLYPENQAAGVAAK 64
Query: 80 KDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMPQPDFLLCCNNICNMMTKWY 139
K L LC+ AE GY D+C YAR + +A MP PDFLLCCNNICN + KWY
Sbjct: 65 KGSLELCEIAESKGYSIDLCAYARTNFGLLENGGCEALDMPAPDFLLCCNNICNQVIKWY 124
Query: 140 ENIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDAC 199
ENI+R +IPLIMID F+N + + ++DY+ QF+ AIKQLE ++GKKFD KKFE+
Sbjct: 125 ENISRELDIPLIMIDTTFNNEDEVTQSRIDYIKAQFEEAIKQLEIISGKKFDPKKFEEVM 184
Query: 200 ARANRTAAAWLKACKY-MGYKPSPLSGFDLFNHMADIVAARCDEEAAIGFELLADEFEQS 258
+ W + PSP++GFDLF +MA IV AR +E F+LL +E E +
Sbjct: 185 KISAENGRLWKYSMSLPADSSPSPMNGFDLFTYMAVIVCARGKKETTEAFKLLIEELEDN 244
Query: 259 IKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRY--HNIR 316
+K G S++ E++RI+ EGIPCWP + + L GVN+T VY A+ +Y +++
Sbjct: 245 MKTGKSSFRGEEKYRIMMEGIPCWPYIGYKMKTLAKFGVNMTGSVYPHAWALQYEVNDLD 304
Query: 317 EMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDL 376
MA AY +V ++ ++R E GA + NRSCK S E++RR E+
Sbjct: 305 GMAVAYSTMFNNVNLDRMTKYRVDSLVEGKCDGAFYHMNRSCKLMSLIQYEMQRRAAEET 364
Query: 377 GIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEKLAKGE 421
G+P FDGDQAD R F+ Q+ TR+QGLVE+M+ERK KL +GE
Sbjct: 365 GLPYAGFDGDQADPRAFTNAQFETRIQGLVEVMEERK--KLNRGE 407
>gi|153938029|ref|YP_001391492.1| putative R-2-hydroxyglutaryl-CoA dehydratase, alpha subunit
[Clostridium botulinum F str. Langeland]
gi|152933925|gb|ABS39423.1| putative R-2-hydroxyglutaryl-CoA dehydratase, alpha subunit
[Clostridium botulinum F str. Langeland]
Length = 410
Score = 346 bits (887), Expect = 2e-93, Method: Composition-based stats.
Identities = 183/401 (45%), Positives = 247/401 (61%), Gaps = 3/401 (0%)
Query: 17 EGHKPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASA 76
E K AA ++ G++ K YA+AW+AK+ G VGWS+S FP EL + F L+V+YPEN AA
Sbjct: 6 EVKKNAAKVINGILAKSYADAWKAKEEGRPVGWSTSVFPQELVEVFGLDVLYPENQAAGV 65
Query: 77 AAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMPQPDFLLCCNNICNMMT 136
AAKK+ L LC+AAE GY D+C YAR + ++ MP+PDF+ CCNNICN +
Sbjct: 66 AAKKESLSLCEAAESAGYSIDLCAYARTNFGLLEKGGSENLNMPKPDFICCCNNICNQVI 125
Query: 137 KWYENIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFE 196
KWYENIA+ +IPLIMID F+N + E ++ YL QF+ AIKQLE+++GKKFD KKFE
Sbjct: 126 KWYENIAKELDIPLIMIDTTFNNENEVTENRIKYLRAQFEEAIKQLEKISGKKFDPKKFE 185
Query: 197 DACARANRTAAAWLKACKY-MGYKPSPLSGFDLFNHMADIVAARCDEEAAIGFELLADEF 255
+ + W + G PSP++GFDLF +MA IV R E F+LL E
Sbjct: 186 EVMKISAENGKLWKYSMSLPSGSFPSPMNGFDLFTYMAVIVCYRGKIETTEAFKLLISEL 245
Query: 256 EQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRY--H 313
E +IK +++ E++RI+ EGIPCWP + L GVN+T VY A+ +Y +
Sbjct: 246 EDNIKNKATSFRGEEKYRIMMEGIPCWPYIGYKMRTLAGYGVNMTGSVYPHAWALQYEVN 305
Query: 314 NIREMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWK 373
++ MA AY +V +E ++R + GA + NRSCK S E+ER+
Sbjct: 306 DLDGMAKAYSTMFNNVNLERMCKYRVDSLIDGNCDGAFYHMNRSCKLMSFIQYEMERQVF 365
Query: 374 EDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKE 414
E GIP FDGDQAD RNFS Q+ TR+QGLVE+M+ERK+
Sbjct: 366 EKTGIPYAGFDGDQADPRNFSKAQFETRLQGLVEVMEERKK 406
>gi|148380152|ref|YP_001254693.1| subunit of oxygen-sensitive 2-hydroxyisocaproyl-CoA dehydratase
[Clostridium botulinum A str. ATCC 3502]
gi|153932215|ref|YP_001384450.1| putative R-2-hydroxyglutaryl-CoA dehydratase, alpha subunit
[Clostridium botulinum A str. ATCC 19397]
gi|153936713|ref|YP_001387987.1| putative R-2-hydroxyglutaryl-CoA dehydratase, alpha subunit
[Clostridium botulinum A str. Hall]
gi|148289636|emb|CAL83739.1| subunit of oxygen-sensitive 2-hydroxyisocaproyl-CoA dehydratase
[Clostridium botulinum A str. ATCC 3502]
gi|152928259|gb|ABS33759.1| putative R-2-hydroxyglutaryl-CoA dehydratase, alpha subunit
[Clostridium botulinum A str. ATCC 19397]
gi|152932627|gb|ABS38126.1| putative R-2-hydroxyglutaryl-CoA dehydratase, alpha subunit
[Clostridium botulinum A str. Hall]
Length = 410
Score = 345 bits (884), Expect = 5e-93, Method: Composition-based stats.
Identities = 181/401 (45%), Positives = 247/401 (61%), Gaps = 3/401 (0%)
Query: 17 EGHKPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASA 76
E K AA ++ G++ K YA+AW+AK+ G VGWS+S FP EL + F L+V+YPEN AA
Sbjct: 6 EVKKNAAKVINGILAKSYADAWKAKEEGRPVGWSTSVFPQELVEVFGLDVLYPENQAAGV 65
Query: 77 AAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMPQPDFLLCCNNICNMMT 136
AAKK+ L LC+AAE GY D+C YAR + ++ MP+PDF+ CCNNICN +
Sbjct: 66 AAKKESLSLCEAAESAGYSIDLCAYARTNFGLLEKGGSENLNMPKPDFICCCNNICNQVI 125
Query: 137 KWYENIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFE 196
KWYENIA+ +IPLIMID F+N + E ++ YL QF+ AIKQLE+++GKKFD KKFE
Sbjct: 126 KWYENIAKELDIPLIMIDTTFNNENEVTENRIKYLRAQFEEAIKQLEKISGKKFDPKKFE 185
Query: 197 DACARANRTAAAWLKACKY-MGYKPSPLSGFDLFNHMADIVAARCDEEAAIGFELLADEF 255
+ + W + G PSP++GFDLF +MA IV R E F+LL E
Sbjct: 186 EVMKISAENGKLWKYSMSLPSGSFPSPMNGFDLFTYMAVIVCYRGKIETTEAFKLLISEL 245
Query: 256 EQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRY--H 313
E +I+ +++ E++RI+ EGIPCWP + L GVN+T VY A+ +Y +
Sbjct: 246 EDNIRNKATSFRGEEKYRIMMEGIPCWPYIGYKMRTLAGYGVNMTGSVYPHAWALQYEVN 305
Query: 314 NIREMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWK 373
++ MA AY +V +E ++R + GA + NRSCK S E+ER+
Sbjct: 306 DLDGMAKAYSTMFNNVNLERMCKYRVDSLIDGNCDGAFYHMNRSCKLMSFIQYEMERQVF 365
Query: 374 EDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKE 414
+ GIP FDGDQAD RNFS Q+ TR+QGLVE+M+ERK+
Sbjct: 366 QKTGIPYAGFDGDQADPRNFSKAQFETRLQGLVEVMEERKK 406
>gi|118444701|ref|YP_878442.1| R-phenyllactate dehydratase medium subunit, putative [Clostridium
novyi NT]
gi|118135157|gb|ABK62201.1| R-phenyllactate dehydratase medium subunit, putative [Clostridium
novyi NT]
Length = 423
Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats.
Identities = 155/390 (39%), Positives = 216/390 (55%), Gaps = 16/390 (4%)
Query: 32 KVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASAAAKKDGLRLCQAAED 91
K+ A +AKK G+LV WS+S P E A D+ +VYPE HAA A+K L + + A+
Sbjct: 19 KLDEEARQAKKEGKLVCWSASVAPPEFCVAMDIAMVYPETHAAGIGARKGSLDMLEVADR 78
Query: 92 MGYDNDICGYARISLAY--------------AAGEPTDARRMPQPDFLLCCNNICNMMTK 137
GY DIC YAR++L Y A + A +P PD ++ CNNICN + K
Sbjct: 79 KGYSTDICSYARVNLGYMELLKEKALTGKTPEALANSPAADVPLPDLIITCNNICNTLLK 138
Query: 138 WYENIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFED 197
WYEN+A NIP I+ID+PF++T+ P+ DY+ QF AI LEE+ G+KFD KF +
Sbjct: 139 WYENLAVELNIPCIVIDVPFNHTMPIPQYAKDYIAEQFKDAIATLEEVCGRKFDYDKFLE 198
Query: 198 ACARANRTAAAWLKACKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAIGFELLADEFEQ 257
+ R+ A W + +KPSPL+ FDLFN MA IV AR + A I F+ ADE E+
Sbjct: 199 VQKQTQRSVAQWNRLAALSSHKPSPLNCFDLFNFMALIVCARSRDYAEITFKKFADELEE 258
Query: 258 SIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYH--NI 315
++K G ++ E+ RI +EGI WP L F+ LK G +T Y + Y ++
Sbjct: 259 NLKNGIYAFKGAEKKRITWEGIAVWPYLGHTFKSLKSLGSIMTGSAYPGLWNLTYTPGDM 318
Query: 316 REMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKED 375
MA AY + + C++ V+ + + G + NRSCK S E + +E
Sbjct: 319 SSMAEAYTRIYINTCLDNKVKVLSDIVEGGKCDGIAYHLNRSCKLMSFLNVETAEKLQEQ 378
Query: 376 LGIPVVHFDGDQADERNFSTEQYNTRVQGL 405
G+P V FDGDQ D RNF+ Q++TRVQ L
Sbjct: 379 NGLPYVSFDGDQTDPRNFAPAQFDTRVQAL 408
>gi|11499540|ref|NP_070782.1| 2-hydroxyglutaryl-CoA dehydratase, subunit alpha (hgdA)
[Archaeoglobus fulgidus DSM 4304]
gi|2648584|gb|AAB89297.1| 2-hydroxyglutaryl-CoA dehydratase, subunit alpha (hgdA)
[Archaeoglobus fulgidus DSM 4304]
Length = 391
Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats.
Identities = 121/386 (31%), Positives = 190/386 (49%), Gaps = 15/386 (3%)
Query: 32 KVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASAAAKKDGLRLCQAAED 91
++ A + + E+ GW +S P+EL A D+ VYPENH A A K G AE
Sbjct: 14 QIMAGYYMMGNQAEVKGWITSGAPVELLYAMDIYPVYPENHGALIGAAKQGPYFSDFAER 73
Query: 92 MGYDNDICGYAR--ISLAYAAGEPTDARRMPQPDFLLCCNNICNMMTKWYENIARMHNIP 149
G+ D+C YAR I +A P +P+P FL CNNICN + KWYE ++R+ +P
Sbjct: 74 KGFSRDLCSYARCDIGCVFAGTSPIGG--LPEPTFLFACNNICNTVVKWYEVLSRIFKVP 131
Query: 150 LIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAW 209
L ++D PF + E V Y+ Q + LE+ TG++ + K D ++ + A+
Sbjct: 132 LFVLDTPFVRK-ELKESYVKYVHDQLYEFVDFLEKTTGRELSDSKLRDTVIKSIQGVKAY 190
Query: 210 LKACKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAIGFELLADEFEQSIKEGTSTWEYP 269
+ +KPSPL+ FD F +MA IV R + + + +E E+ +K G E
Sbjct: 191 AEVLGMARHKPSPLTCFDAFINMAPIVCLRGTDYPVQFYAEMKEELEERVKRGEGAIE-N 249
Query: 270 EEHRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAF-GF----RYHNIREMAAAYCK 324
EE R+L++ IP W LK E + + A Y A+ GF + MA Y
Sbjct: 250 EEIRLLWDNIPVWYRLKWFSEFFAERNACLVADTYTNAWTGFISIDKSDIFWSMAETYTF 309
Query: 325 APCSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFD 384
++ +E E + + GA+++ NRSCKP+S E+++ + +P V +
Sbjct: 310 IYLNIGLEHMAEAINRLIDYYDVDGAVIHSNRSCKPYSFGQYELQKM----IEVPSVIIE 365
Query: 385 GDQADERNFSTEQYNTRVQGLVEIMQ 410
D D R FS Q TR++ +E+++
Sbjct: 366 ADMVDSRTFSEAQVETRLEAFLEMLR 391
>gi|109645397|ref|ZP_01369317.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Desulfitobacterium
hafniense DCB-2]
gi|109643346|gb|EAT52899.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Desulfitobacterium
hafniense DCB-2]
Length = 409
Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats.
Identities = 116/381 (30%), Positives = 188/381 (49%), Gaps = 13/381 (3%)
Query: 34 YANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASAAAKKDGLRLCQAAEDMG 93
Y W K G + W +S P+E+ +AF ++ YPE +AA + K RLCQ AE G
Sbjct: 32 YHRYW-GKPLGRKIAWVTSGAPVEILRAFKIHPAYPEQYAAIYSTNKATARLCQVAEAAG 90
Query: 94 YDNDICGYARISLAYAAGEPTDARR--MPQPDFLLCCNNICNMMTKWYENIARMHNIPLI 151
Y D+C YAR ++ P A MP+PD L+ CNNIC + KWYE +AR +PL+
Sbjct: 91 YSQDLCSYARSNIG-GVLRPDLAPLGGMPKPDLLVACNNICGTVLKWYEVLARHFKVPLL 149
Query: 152 MIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLK 211
++D P+ T + E+ +Y++ Q + +LE++TG+ DEK+ E + T W +
Sbjct: 150 VLDTPYL-TGEMTEQARNYVLEQLKAMVVELEKITGRTLDEKELEKQMEFSRETTGLWKE 208
Query: 212 ACKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAIGFELLADEFE--QSIKEGTSTWEYP 269
A + +PSPL+ DLF HMA IV R + + L DE + +++ +G
Sbjct: 209 ARQACQSRPSPLNAPDLFIHMAPIVVMRGTKGGRDYYRLFRDEVKGREALAQGAVE---N 265
Query: 270 EEHRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYH---NIREMAAAYCKAP 326
E R++++ I WP + + + G Y+ + + +AA Y +
Sbjct: 266 ERIRLVWDNIAIWPKVFSFNKMFTERGACFVTDTYSGGWAMEQAPGTPLESLAATYTEVF 325
Query: 327 CSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGD 386
+ E + + ++ G +++ NRSCKP+S I RR + G+P + + D
Sbjct: 326 LNRSPEFRTKQLVQLIRDYQADGFVMHSNRSCKPYSLVQEVIRRRVMMETGVPGLMIEAD 385
Query: 387 QADERNFSTEQYNTRVQGLVE 407
AD R ++ E RVQ +E
Sbjct: 386 MADPRAYAEEPIRNRVQAFLE 406
>gi|89895061|ref|YP_518548.1| hypothetical protein DSY2315 [Desulfitobacterium hafniense Y51]
gi|89334509|dbj|BAE84104.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 409
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 115/381 (30%), Positives = 187/381 (49%), Gaps = 13/381 (3%)
Query: 34 YANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASAAAKKDGLRLCQAAEDMG 93
Y W K G + W +S P+E+ +AF ++ YPE +AA + K LCQ AE G
Sbjct: 32 YHRYW-GKPLGRKIAWVTSGAPVEILRAFKIHPAYPEQYAAIYSTNKATANLCQVAEAAG 90
Query: 94 YDNDICGYARISLAYAAGEPTDARR--MPQPDFLLCCNNICNMMTKWYENIARMHNIPLI 151
Y D+C YAR ++ P A MP+PD L+ CNNIC + KWYE +AR +PL+
Sbjct: 91 YSQDLCSYARSNIG-GVLRPDLAPLGGMPKPDLLVACNNICGTVLKWYEVLARHFKVPLL 149
Query: 152 MIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLK 211
++D P+ T + E+ +Y++ Q + +LE++TG+ DEK+ E + T W +
Sbjct: 150 VLDTPYL-TGEMTEQARNYVLEQLKAMVVELEKITGRTLDEKELEKQMEFSRETTGLWKE 208
Query: 212 ACKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAIGFELLADEFE--QSIKEGTSTWEYP 269
A + +PSPL+ DLF HMA IV R + + L DE + +++ +G
Sbjct: 209 ARQACQSRPSPLNAPDLFIHMAPIVVMRGTKGGRDYYRLFRDEVKGREALAQGAVE---N 265
Query: 270 EEHRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYH---NIREMAAAYCKAP 326
E R++++ I WP + + + G Y+ + + +AA Y +
Sbjct: 266 ERIRLVWDNIAIWPKVFSFNKMFTERGACFVTDTYSGGWAMEQAPGTPLESLAATYTEVF 325
Query: 327 CSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGD 386
+ E + + ++ G +++ NRSCKP+S I RR + G+P + + D
Sbjct: 326 LNRSPEFRTKQLVQLIRDYQADGFVMHSNRSCKPYSLVQEVIRRRVMMETGVPGLMIEAD 385
Query: 387 QADERNFSTEQYNTRVQGLVE 407
AD R ++ E RVQ +E
Sbjct: 386 MADPRAYAEEPIRNRVQAFLE 406
>gi|121543456|ref|ZP_01675123.1| (R)-2-hydroxyglutaryl-CoA dehydratase, alpha subunit [Candidatus
Desulfococcus oleovorans Hxd3]
gi|121516647|gb|EAX53584.1| (R)-2-hydroxyglutaryl-CoA dehydratase, alpha subunit [Candidatus
Desulfococcus oleovorans Hxd3]
Length = 419
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 120/404 (29%), Positives = 201/404 (49%), Gaps = 21/404 (5%)
Query: 32 KVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVY--PENHAASAAAKKDGLRLCQAA 89
K Y + G V W + P E+ FD NVV+ PE+HAA AAK G C A
Sbjct: 19 KTYTDIHTRAAAGAFVVWGAIIVPAEIFAGFD-NVVFCAPESHAAVCAAKGVGAAQCLKA 77
Query: 90 EDMGYDNDICGYARISLA-YAAG-EPTDARRMPQPDFLLCCNNICNMMTKWYENIARMHN 147
E +GY D+C YARI + ++ G + + +P+P L+ N C+++ KW++ R +
Sbjct: 78 ESLGYSMDLCSYARIDIGCFSDGCKESPTMGLPRPHLLISNTNNCSLLVKWFDVHRRDMD 137
Query: 148 IPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAA 207
IP ++D+PF +++ DY++ QF I+ +E L+G+ FD +F +A A +
Sbjct: 138 IPHFILDVPFCYGPQQEKDR-DYILTQFGDLIQTVERLSGQTFDRDRFYEAAAHTASASM 196
Query: 208 AWLKACKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAIGFELLADEFEQSIKEGTSTWE 267
W + ++PS ++ FD F MA + AR E A +++LADE E ++K G +
Sbjct: 197 DWKRFMACAEHRPSGITVFDSFVQMAPFLIARGTPELAAHYKILADETEANVKAG--IFP 254
Query: 268 YPEE-HRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFG-----FRYHNIRE---- 317
P+E +R+L++ I W L+ + L G N+ A Y G + + E
Sbjct: 255 VPDEKYRLLWDNIAPWHQLRKMSTRLAGMGANIVAAPYTSCIGAVEGSYDLLSFDENDDP 314
Query: 318 ---MAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKE 374
+A + C + ++ + + ++ GI G + NRSCK +S + +RR +E
Sbjct: 315 LWYLARVQNHSVCPMGMDLRLSSMGPVIEKLGIDGVVFASNRSCKVFSVMQMDEQRRVRE 374
Query: 375 DLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEKLA 418
IP V D D AD R FS E R++ L+E ++ ++ ++
Sbjct: 375 QYDIPCVMIDVDHADVRKFSQENVYVRLEALLESIEAKRASAVS 418
>gi|78043965|ref|YP_359698.1| (R)-2-hydroxyglutaryl-CoA dehydratase, alpha subunit
[Carboxydothermus hydrogenoformans Z-2901]
gi|77996080|gb|ABB14979.1| (R)-2-hydroxyglutaryl-CoA dehydratase, alpha subunit
[Carboxydothermus hydrogenoformans Z-2901]
Length = 404
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 121/372 (32%), Positives = 183/372 (49%), Gaps = 14/372 (3%)
Query: 44 GELVGWSSSKFPIELAKAFDLNVVYPENHAASAAAKKDGLRLCQAAEDMGYDNDICGYAR 103
G W +S P+EL +AF + VYPEN+ A A+K LCQ AE+ GY D+C YA+
Sbjct: 37 GYKTAWITSGAPVELLRAFGIEPVYPENYGAICGARKVSPSLCQVAENRGYSLDLCSYAK 96
Query: 104 ISLAYAAGEPTDA--RRMPQPDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSNTV 161
+L + P ++ +P+PD L+ CNNIC + KWYE ++R NIPL +ID PF
Sbjct: 97 SNLG-SIWNPKESPFNGLPRPDLLVVCNNICGTVLKWYETLSREFNIPLFIIDTPFITGE 155
Query: 162 DTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLKACKYMGYKPS 221
P + + Y+ Q + +LE+ KK D + E AN T W + KPS
Sbjct: 156 PQPWQ-IQYVAKQIEKLAIELEKFFRKKLDLNRLEKVILLANETVDLWKGIRNFAKNKPS 214
Query: 222 PLSGFDLFNHMADIVAARCDEEAAIGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPC 281
P++ DLF ++ +V R E A +E + E E+ K G E E++R++++ IP
Sbjct: 215 PVNVTDLFINLGPMVVLRGTEVARDFYEEVYREVEERYKAGVPAVE-GEKYRLVWDNIPI 273
Query: 282 WPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYHNIREMAAAYCKAP--CSVCIETGVEWR- 338
W GL + + G Y + NI++ Y A V + +E+R
Sbjct: 274 WYGLYRFYGYFAERGAVFVTDSYTGGWAV---NIKKGPPFYALAETYAGVFLNRDLEFRK 330
Query: 339 ---ETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFST 395
++ +E G +++ NRSCK +S EI R+ LG+P + D D D R +S
Sbjct: 331 NQLQSFIEEFSADGFVMHSNRSCKAYSFVQEEIRRQIMRSLGVPGLIVDADMTDSRLYSE 390
Query: 396 EQYNTRVQGLVE 407
E RVQ +E
Sbjct: 391 ETVLNRVQAFLE 402
>gi|121542310|ref|ZP_01674043.1| 2-hydroxyglutaryl-CoA dehydratase, subunit alpha (HgdA) [Candidatus
Desulfococcus oleovorans Hxd3]
gi|121517811|gb|EAX54686.1| 2-hydroxyglutaryl-CoA dehydratase, subunit alpha (HgdA) [Candidatus
Desulfococcus oleovorans Hxd3]
Length = 424
Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats.
Identities = 109/378 (28%), Positives = 181/378 (47%), Gaps = 18/378 (4%)
Query: 48 GWSSSKFPIELAKAFDLNVVYPENHAASAAAKKDGLRLCQAAEDMGYDNDICGYARISL- 106
W+ + FPIEL D+ ++PEN A AAA+K RL + AE MGY D+C Y + ++
Sbjct: 51 AWTCAGFPIELLLGLDIFPLHPENMATVAAAQKQSRRLIEHAESMGYSRDLCSYCKTNIG 110
Query: 107 AYAAGEPTDARRMPQPDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIP--FSNTVD-T 163
A P + +PD + C N IC+ KW++ A ++PL + D P S T + T
Sbjct: 111 AVDTQAPLKHGGIARPDIITCTNTICDTHWKWFQVQAEKLDVPLFVFDCPKIVSGTDERT 170
Query: 164 PEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLKACKYMGYKPSPL 223
E V YL+ QF +++ TGK+ + + A ++ + + W +Y P+P
Sbjct: 171 IEGYVTYLVEQFYEFFDFVKKHTGKEPNIDRMVRAAEKSEQLSVLWRDIYEYRKRVPTPY 230
Query: 224 SGFDLFNHMADIVAARCDEEAAIGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWP 283
S + +V FE + + Q ++G T E +R++FEGIP W
Sbjct: 231 SMAETSASFFPLVVMPGARSGIKFFEKILTDIRQRAEQGKGTLTGKERYRLMFEGIPFWY 290
Query: 284 GLKPLFEPLKDNGVNVTAVVYAP-AFGFR---------YHNIREMAAAYCKAPCSVCIET 333
++ +++ + V VVY P F F +R +A A P + +E
Sbjct: 291 RMRFMYDLARYGAV----VVYEPYTFSFAPPKPVSMGYAETLRHVARAMMDVPYTYNLEK 346
Query: 334 GVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNF 393
+ + + +E I G +++ N SC+P S M +++ +++ IPV+ D D R F
Sbjct: 347 RISYFKQAIQEYRIDGVILHENLSCRPSSTGMIDLKNAIQQECDIPVLIIQCDMNDPRAF 406
Query: 394 STEQYNTRVQGLVEIMQE 411
S EQ TRV+G +E+M +
Sbjct: 407 SEEQIKTRVEGFIELMDK 424
>gi|110598990|ref|ZP_01387232.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Geobacter sp.
FRC-32]
gi|110550266|gb|EAT63450.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Geobacter sp.
FRC-32]
Length = 415
Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats.
Identities = 106/376 (28%), Positives = 164/376 (43%), Gaps = 13/376 (3%)
Query: 47 VGWSSSKFPIELAKAFDLNVVYPENHAASAAAKKDGLRLCQAAEDMGYDNDICGYARISL 106
V W +S P EL +A V +PENHAA A + L A +GY DIC Y +
Sbjct: 40 VAWCTSVGPAELLRAMGFAVHFPENHAAMLGATRLATDLIPEATAIGYSPDICSYLTSDI 99
Query: 107 -AYAAGEPTDAR------RMPQPDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSN 159
AY G A+ +P+PD L+ N C + W+ AR +P I I P N
Sbjct: 100 GAYLKGFTPLAKAYPGIESVPKPDVLVYNTNQCRDVQDWFAWYAREFKVPCIGITSP-KN 158
Query: 160 TVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLKACKYMGYK 219
+ ++ + GQ + I LE++TG + D + + A + W + +
Sbjct: 159 VNEVTAAHINDVAGQIEALIPILEQITGTRLDMARLRETVALSRECTQLWKEVLETATAS 218
Query: 220 PSPLSGFDLFNHMADIVAARCDEEAAIGFELLADEFEQSIKEGTSTWEYPEEHRILFEGI 279
P+PL+ FD HM V R +EA +++L E Q I G E E RI ++G+
Sbjct: 219 PAPLTFFDGTIHMGPAVVLRGTQEAVGYYQVLLAELRQRISAGVGAVE-GEAFRIYWDGM 277
Query: 280 PCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYHN----IREMAAAYCKAPCSVCIETGV 335
P W L+ E G V A Y ++ F + +R MA AY +
Sbjct: 278 PIWGRLRQHSELFSGLGTGVVASTYCSSWIFPAFDDSDPLRSMAKAYLELFIVRSDTYKE 337
Query: 336 EWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFST 395
+ + M + I G + + ++C S + + +R + + GIP + GD D R S
Sbjct: 338 GYIKAMLNKFAIDGIIYHDAKTCPYNSNSRYGLHQRLERETGIPHLVISGDLNDMRCVSD 397
Query: 396 EQYNTRVQGLVEIMQE 411
EQ T V+ +E ++E
Sbjct: 398 EQTKTNVEAFIEQLEE 413
>gi|62484827|emb|CAI78844.1| 2-hydroxyglutaryl-coa dehydratase, subunit alpha [uncultured
bacterium]
Length = 413
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 109/398 (27%), Positives = 180/398 (45%), Gaps = 14/398 (3%)
Query: 22 AAAILRGVV-DKVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASAAAKK 80
AA +R ++ D Y AK V W +S P EL +A V +PENH A A +
Sbjct: 14 AAKTMRKLMADHFYELDRAAKDGHPKVAWCTSVGPAELLRAMGFLVYFPENHGAMLGATR 73
Query: 81 DGLRLCQAAEDMGYDNDICGYARISL-AYAAGEP--TDARR----MPQPDFLLCCNNICN 133
AA +GY DIC Y + A+ G +DA +P+PD L+ N C
Sbjct: 74 MATETIPAANAVGYSPDICSYLTSDIGAFLQGRTPLSDAYEGIDGLPKPDVLVYNTNQCR 133
Query: 134 MMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEK 193
+ W + + P+I I+ + + + V + GQ + + LE+++G+KFD
Sbjct: 134 EVQDWLSWYGQCWSRPVIGIEC-YRGVAEVTDVHVAGIAGQIEALVPPLEQISGEKFDID 192
Query: 194 KFEDACARANRTAAAWLKACKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAIGFELLAD 253
+ +A + + + W + + KPSPL+ FD HMA V R + A + L
Sbjct: 193 RLREAVRLSRQCSDLWKEVLETATAKPSPLTFFDSTIHMAPAVVMRGTQTAIDYYHELLP 252
Query: 254 EFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYH 313
E + I +G + E E +R+ +EG+P W L+ L + V A YA ++ F
Sbjct: 253 ELKTRISDGVAAVE-DERYRLYWEGMPIWGRLRDLATQFLELRACVVASTYANSWIFTAL 311
Query: 314 N----IREMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIE 369
+ R MA AY + ++ + M G+ G + + +++C + +
Sbjct: 312 DPKDPFRSMARAYTELFIVRSDPYKEKYLQEMVGTFGVDGIVFHDSKTCPSNTNCRYAMP 371
Query: 370 RRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVE 407
+R +E LG+P + GD D R +S EQ T+++ VE
Sbjct: 372 QRLQERLGVPSITIAGDLNDLRCYSDEQARTQIEAFVE 409
>gi|145619329|ref|ZP_01775380.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Geobacter
bemidjiensis Bem]
gi|144944416|gb|EDJ79490.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Geobacter
bemidjiensis Bem]
Length = 596
Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats.
Identities = 108/378 (28%), Positives = 165/378 (43%), Gaps = 13/378 (3%)
Query: 47 VGWSSSKFPIELAKAFDLNVVYPENHAASAAAKKDGLRLCQAAEDMGYDNDICGYARISL 106
V W +S P EL +A V +PENHAA A + L A +GY DIC Y L
Sbjct: 221 VAWCTSVGPAELLRAMGFAVHFPENHAAMLGATRLATDLIPEANAIGYSPDICSYLTSDL 280
Query: 107 -AYAAGEPTDAR------RMPQPDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSN 159
AY G A+ +P+PD L+ N C + W+ AR +PLI I P N
Sbjct: 281 GAYLKGFTPLAKAYPGIAAVPKPDVLVYNTNQCRDVQDWFAWYARELGVPLIGITSP-KN 339
Query: 160 TVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLKACKYMGYK 219
+ E V+ + Q + + LE + G D + ++ A + W + +
Sbjct: 340 VNEVTEAHVEDVTRQLEALVPVLEGIAGAPLDLARLKEVVALSRDCTELWKEVLETATAV 399
Query: 220 PSPLSGFDLFNHMADIVAARCDEEAAIGFELLADEFEQSIKEGTSTWEYPEEHRILFEGI 279
P+PL+ FD HM V R +A + +L E EQ K EE+RI ++G+
Sbjct: 400 PAPLTFFDGTIHMGPAVVLRGTPQAVEYYRVLLAELEQR-KATREAAVAGEEYRIYWDGM 458
Query: 280 PCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYHNIREMAAAYCKAPCSVCIETGVEWRE 339
P W L+P E NV A Y ++ F + E + KA + I ++E
Sbjct: 459 PVWGRLRPHSELFAGLKTNVVASTYCSSWIFPAFDAEEPLRSMAKAYLELFIVRSDAYKE 518
Query: 340 ----TMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFST 395
M K+ I G + + ++C S + + +R + + G+P + GD D R S
Sbjct: 519 RYLADMTKKFRIDGIVYHDAKTCPYNSNSRYGMPQRLEAETGLPYLVISGDLNDMRCVSD 578
Query: 396 EQYNTRVQGLVEIMQERK 413
EQ T V+ +E ++E K
Sbjct: 579 EQTKTNVEAFIEQLEEGK 596
>gi|90422542|ref|YP_530912.1| Benzoyl-CoA reductase, subunit B [Rhodopseudomonas palustris
BisB18]
gi|90104556|gb|ABD86593.1| Benzoyl-CoA reductase, subunit B [Rhodopseudomonas palustris
BisB18]
Length = 436
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 108/422 (25%), Positives = 177/422 (41%), Gaps = 20/422 (4%)
Query: 12 KPRPIEGHKPAA-AILRGVVDKVYANAWEAKKRGELVGWSSSKFPI-ELAKAFDLNVVYP 69
K +P E K A+ A + +V+ Y AK+RGE V + + EL FD+ P
Sbjct: 8 KTKPPEATKDASMARQKEMVNAHYDRLANAKERGEKVAATFVPGNLNELLMCFDMINNLP 67
Query: 70 ENHAASAAAKKDGLRLCQAAEDMGYDNDICGYAR--ISLAYAAGEPTDARRMPQPDFLLC 127
E +A +K AE +G+ D+C Y + I + + RR+P PD LL
Sbjct: 68 EVNAIQNGLRKQSGAFVMEAEKLGHSEDVCTYVKSDIGMMAKGNIGPNGRRLPDPDVLLL 127
Query: 128 CNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFD-HAIKQLEELT 186
C KW+E + R +N IM P+ ++ + Y++ Q I +LE ++
Sbjct: 128 SYTGCFTFMKWFELLRRQYNCETIMFQTPYLADGKITKDMISYMVKQLKLDVIPKLERIS 187
Query: 187 GKKFDEKKFEDACARANRTAAAWLKACKYMGYKPSPLSG-FDLFNHMADIVAA-RCDEEA 244
G KFD + D ++ + + + KPSP+ F ++ I A R +EA
Sbjct: 188 GVKFDIDRLRDYLRKSAKAEDDHVWVLQSAKNKPSPIDAYFGGIYYIGPIFGAFRGTDEA 247
Query: 245 AIGFELLADEFEQSIKEGTSTWEY-----PEEHRILFEGIPCWPGLKPLFEPLKDNGVNV 299
++ L E EQ I EG E +R++ EG P + + ++ D G V
Sbjct: 248 IEYYKFLRAEVEQRIAEGKGPVTPDGDMGKERYRLVVEGPPNYTNFRQFWKMFYDEGAVV 307
Query: 300 TAVVYAPA-----FGFRYHNIR--EMAAAYC-KAPCSVCIETGVEWRETMAKENGISGAL 351
A Y GFR+ R E A YC + + V+ E E G L
Sbjct: 308 VASSYTKVGGTYDLGFRHDPDRPLESLAEYCLNVYTNRNLPMRVDMLENYMNEYEADGLL 367
Query: 352 VNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQE 411
+N +SC +S + R ++ G P + D D R FS R++ +++++
Sbjct: 368 INSIKSCNSFSAGQLLMMREVEKRTGKPAAFIETDLVDPRYFSAANVKNRLESYFQMIEQ 427
Query: 412 RK 413
++
Sbjct: 428 KR 429
>gi|115522634|ref|YP_779545.1| benzoyl-CoA reductase, subunit B [Rhodopseudomonas palustris
BisA53]
gi|115516581|gb|ABJ04565.1| benzoyl-CoA reductase, subunit B [Rhodopseudomonas palustris
BisA53]
Length = 436
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 106/422 (25%), Positives = 178/422 (42%), Gaps = 20/422 (4%)
Query: 12 KPRPIEGHKPAA-AILRGVVDKVYANAWEAKKRGELVGWSSSKFPI-ELAKAFDLNVVYP 69
K +P E K A+ A + +V+ Y AK+RGE V + + EL FD+ P
Sbjct: 8 KTKPPEAAKDASMARQKEMVNAHYDRLANAKERGEKVAATFVPGNLNELLMCFDMVNNLP 67
Query: 70 ENHAASAAAKKDGLRLCQAAEDMGYDNDICGYAR--ISLAYAAGEPTDARRMPQPDFLLC 127
E +A +K AE +G+ D+C Y + I + + RR+P PD LL
Sbjct: 68 EVNAIQNGLRKQSGAFVMEAEKLGHSEDVCTYVKSDIGMMAKGNIGPNGRRLPDPDVLLL 127
Query: 128 CNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDH-AIKQLEELT 186
C KW+E + R +N IM P+ ++ + Y++ Q I +LE ++
Sbjct: 128 SYTGCFTFMKWFELLRRQYNCETIMFQTPYLADGKITKDMIAYMVKQLKQDVIPKLERIS 187
Query: 187 GKKFDEKKFEDACARANRTAAAWLKACKYMGYKPSPLSG-FDLFNHMADIVAA-RCDEEA 244
G KFD + + ++ + + + KPSP+ F ++ I A R ++A
Sbjct: 188 GVKFDIDRLREYLRKSAKAEDDHVWVLQSAKNKPSPIDAYFGGIYYIGPIFGAFRGTDDA 247
Query: 245 AIGFELLADEFEQSIKEGTSTWEY-----PEEHRILFEGIPCWPGLKPLFEPLKDNGVNV 299
++ L E EQ I +G E +R++ EG P + + ++ D G V
Sbjct: 248 IEYYKFLRAEVEQRIADGKGPVTPDGDMGKERYRLVVEGPPNYTNFRQFWKMFSDEGAVV 307
Query: 300 TAVVYAPA-----FGFRYHNIR--EMAAAYC-KAPCSVCIETGVEWRETMAKENGISGAL 351
A Y FGFR+ R E A YC + + V+ E E G L
Sbjct: 308 VASSYTKVGGTYDFGFRHDPDRPLESLAEYCLNVYTNRNLPMRVDMLENYMNEYEADGLL 367
Query: 352 VNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQE 411
+N +SC +S + R ++ G P + D D R FS R++ +++++
Sbjct: 368 INSIKSCNSFSAGQLLMMREVEKRTGKPAAFIETDLVDPRYFSAANVKNRLESYFQMIEQ 427
Query: 412 RK 413
++
Sbjct: 428 KR 429
>gi|62484850|emb|CAI78867.1| benzoyl-CoA reductase, beta subunit [uncultured bacterium]
Length = 438
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 111/423 (26%), Positives = 184/423 (43%), Gaps = 61/423 (14%)
Query: 32 KVYANAWEAKKRGELV----GWSSSKFPIELAKAFDLNVVYPENHAASAAAKKD-GLRLC 86
K Y + +A +RG L WS S P L + D+ + E +AAS A K+ LR
Sbjct: 23 KYYEDYAKAHERGGLRWSGGAWSFSAIPSGLGQ--DVWSLTSEPYAASIAFNKEFSLRCL 80
Query: 87 QAAEDMGYDNDICGYAR------ISLAYAAGEPTDARRMPQPDFLLCCNNICNMMTKWYE 140
+AAE GY D+C Y R I Y G P P+PDF+ ++IC KWY+
Sbjct: 81 EAAEKAGYARDLCAYMRNYWGSVILNEYVLGGP-----FPKPDFIWQ-DHICCSHAKWYQ 134
Query: 141 NIARMHN-IPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDAC 199
++ + IP +D+ D K+DYL+GQ I+ LE+ TG+K+ ++ +A
Sbjct: 135 VVSDLEGGIPHFSMDVAVGPYQDMAPHKIDYLVGQMQDGIEWLEKTTGRKYSDELLIEAV 194
Query: 200 ARANRTAAAWLKACKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAIGFELLADEFEQSI 259
R+ + W + C Y P+PL +++ + D A ++ L DE ++ +
Sbjct: 195 KNEFRSTSTWAEICAYNKNIPAPLDEKTMYSLYVLGTLNKHDRSTADFYDELRDEIKERV 254
Query: 260 KEGTSTWEYPEEH-RILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYHNIREM 318
++G + P E R++ + P W G +F +++ G A+ + F I E
Sbjct: 255 EDGIAA--IPNERCRLMSDTQPPW-GFLSIFRYMEEFG----AISIGSLYTFGLIGIWED 307
Query: 319 AAAYCKAPCSVCIETGV--------------------EWRE------------TMAKENG 346
P + ++ G+ EW+ +AKE
Sbjct: 308 KPDGSWGPRTTPMQQGIQIKDREQALRLYADWTLSRPEWQHFYSPHIKTEMMIRIAKEWH 367
Query: 347 ISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLV 406
++G L++YNR C+ S + E R + G PV+ F+G+ DER F + R +
Sbjct: 368 LNGILLHYNRGCEGLSVGIAE-NRLGLIEAGYPVMAFEGNMGDEREFDEARVKDRFDAFM 426
Query: 407 EIM 409
E +
Sbjct: 427 ETL 429
>gi|91976016|ref|YP_568675.1| Benzoyl-CoA reductase, subunit B [Rhodopseudomonas palustris BisB5]
gi|91682472|gb|ABE38774.1| Benzoyl-CoA reductase, subunit B [Rhodopseudomonas palustris BisB5]
Length = 436
Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats.
Identities = 106/422 (25%), Positives = 177/422 (41%), Gaps = 20/422 (4%)
Query: 12 KPRPIEGHKPAA-AILRGVVDKVYANAWEAKKRGELVGWSSSKFPI-ELAKAFDLNVVYP 69
K RP E K A+ A + +V+ Y AK+RGE V + + EL FD+ P
Sbjct: 8 KTRPPEVVKDASMARQKEMVNAHYDRLANAKERGEKVAATFVPGNLNELLMCFDMVNNLP 67
Query: 70 ENHAASAAAKKDGLRLCQAAEDMGYDNDICGYAR--ISLAYAAGEPTDARRMPQPDFLLC 127
E +A ++ AE +G+ D+C Y + I + + RR+P PD LL
Sbjct: 68 EVNAIQNGLRRQSGAFVMEAEKLGHSEDVCTYVKSDIGMMAKGNIGPNGRRLPDPDVLLL 127
Query: 128 CNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDH-AIKQLEELT 186
C KW+E + R + IM P+ ++ + Y++ Q I +LE ++
Sbjct: 128 SYTGCFTFMKWFELLRRQYGCETIMFQTPYLADGKITKDMIAYMVKQLKQDVIPKLERIS 187
Query: 187 GKKFDEKKFEDACARANRTAAAWLKACKYMGYKPSPLSG-FDLFNHMADIVAA-RCDEEA 244
G KFD + + ++ + + + KPSP+ F ++ I A R ++A
Sbjct: 188 GVKFDIDRLREYLRKSAKAEDDHVWVLQSAKNKPSPIDAYFGGIYYIGPIFGAFRGTDDA 247
Query: 245 AIGFELLADEFEQSIKEGTSTWEY-----PEEHRILFEGIPCWPGLKPLFEPLKDNGVNV 299
++ L E EQ I EG E +R++ EG P + + ++ D G V
Sbjct: 248 IDYYKFLRAEVEQRIAEGKGPVTPDGDMGKERYRLVVEGPPNYTNFRQFWKMFYDEGAVV 307
Query: 300 TAVVYAPA-----FGFRYHNIR--EMAAAYC-KAPCSVCIETGVEWRETMAKENGISGAL 351
A Y FGFR+ R E A YC + + V+ E E G L
Sbjct: 308 VASSYTKVGGTYDFGFRHDPDRPLESLAEYCLNVYTNRNLPMRVDMLENYMNEYEADGLL 367
Query: 352 VNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQE 411
+N +SC +S + R ++ G P + D D R FS R++ +++++
Sbjct: 368 INSIKSCNSFSAGQLLMMREVEKRTGKPAAFIETDLVDPRYFSAANVKNRLESYFQMIEQ 427
Query: 412 RK 413
++
Sbjct: 428 KR 429
>gi|39933735|ref|NP_946011.1| benzoyl-CoA reductase subunit [Rhodopseudomonas palustris CGA009]
gi|3165396|gb|AAC23926.1| benzoyl-CoA reductase subunit [Rhodopseudomonas palustris]
gi|39647582|emb|CAE26102.1| benzoyl-CoA reductase subunit [Rhodopseudomonas palustris CGA009]
Length = 436
Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats.
Identities = 103/429 (24%), Positives = 182/429 (42%), Gaps = 20/429 (4%)
Query: 5 MEKLPNKKPRPIEGHKPAA-AILRGVVDKVYANAWEAKKRGELVGWSSSKFPI-ELAKAF 62
M + K +P E K A+ A + +V+ Y AK+RGE V + + EL F
Sbjct: 1 MTVIVGPKTKPPEAIKDASMARQKQMVNAHYDRLASAKERGEKVAATFVPGNLNELLMCF 60
Query: 63 DLNVVYPENHAASAAAKKDGLRLCQAAEDMGYDNDICGYAR--ISLAYAAGEPTDARRMP 120
D+ PE +A ++ AE +G+ D+C Y + I + + + +P
Sbjct: 61 DMVNNLPEVNAIQNGLRRQSGGYVMEAEKLGHSEDVCTYVKSDIGMMAKGNIGPNGKPLP 120
Query: 121 QPDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDH-AI 179
PD LL C KW+E + R + IM P+ ++ + Y++ Q I
Sbjct: 121 DPDVLLLSYTGCFTFMKWFELLRRQYKCETIMFQTPYLADGRITKDMISYMVKQLRQDVI 180
Query: 180 KQLEELTGKKFDEKKFEDACARANRTAAAWLKACKYMGYKPSPLSG-FDLFNHMADIVAA 238
+LE ++G KFD + + ++ + + + +KPSP+ F ++ I A
Sbjct: 181 PKLERISGVKFDIDRLREYLRKSAKAEDDHVWVLQSAKHKPSPIDAYFGGIYYIGPIFGA 240
Query: 239 -RCDEEAAIGFELLADEFEQSIKEG----TSTWEYPEE-HRILFEGIPCWPGLKPLFEPL 292
R ++A ++ L E EQ I +G T + +E +R++ EG P + + ++
Sbjct: 241 FRGTDDAIEYYKFLRAEVEQRIAQGKGPVTPDGDMGQERYRLVVEGPPNYTNFRQFWKMF 300
Query: 293 KDNGVNVTAVVYAPA-----FGFRYHNIR--EMAAAYC-KAPCSVCIETGVEWRETMAKE 344
D G V A Y +GFR+ R E A YC + + V+ E E
Sbjct: 301 YDEGAVVVASSYTKVGGTYDYGFRHDPDRPLESLAEYCLNVYTNRNLPMRVDMLENYINE 360
Query: 345 NGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQG 404
G L+N +SC +S + R ++ G P + D D R FS R++
Sbjct: 361 YEADGLLINSIKSCNSFSAGQLLMMREVEKRTGKPAAFIETDLVDPRYFSAANVKNRLES 420
Query: 405 LVEIMQERK 413
+++++++
Sbjct: 421 YFQMIEQKR 429
>gi|3724169|emb|CAA12248.1| B-subunit of benzoyl-CoA reductase [Thauera aromatica]
Length = 432
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 94/380 (24%), Positives = 152/380 (40%), Gaps = 28/380 (7%)
Query: 57 ELAKAFDLNVVYPENHAASAAAKKDGLRLCQAAEDMGYDNDICGY--ARISLAYAAGEPT 114
EL FD+ PE +A +K + AE G+ D+C Y A I +
Sbjct: 50 ELIMCFDMVNNLPETNAIQNGMRKQSGGMIMDAEKAGHSEDVCTYVKADIGMMGRGNIAP 109
Query: 115 DARRMPQPDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQ 174
+ + MP PD LL C KW+E + + P +M+ IP+ + D+++ Q
Sbjct: 110 NGKPMPAPDMLLLSYTGCFTFMKWFELLRHEYKCPTVMLQIPYQGDGKITKNMRDFVVKQ 169
Query: 175 F-DHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLKACKYMGYKPSPLSGF--DLFNH 231
+ I E+++G KFD + + + + + + +PSP+ + ++
Sbjct: 170 LKEEVIPMFEQVSGVKFDIDRLREYLKNSAKAEDDLVWVLESAKNRPSPIDAYFGGVYYI 229
Query: 232 MADIVAARCDEEAAIGFELLADEFEQSIKEG----TSTWEYPEE-HRILFEGIPCWPGLK 286
A R +A + LL E EQ I+EG T + EE +R++ EG P W +
Sbjct: 230 GPMFTAFRGTADAVEYYGLLRGEIEQRIREGKGPITPEGDMKEEKYRLVVEGPPNWTSFR 289
Query: 287 PLFEPLKDNGVNVTAVVYAPAFGFRYHNIRE-------MAAAYCKAPCSV--CIETGVEW 337
++ D G V A Y G R A YC C + VE
Sbjct: 290 EFWKLFYDEGAVVVASSYTKVGGLYDQGFRHDPNDPLGTLADYCLG-CYTNNNLPQRVEL 348
Query: 338 RETMAKENGISGALVNYNRSCKPWSGA----MPEIERRWKEDLGIPVVHFDGDQADERNF 393
E E G L+N +SC +S M EIE+R G P + D D R F
Sbjct: 349 LEKYMNEYQADGLLINSIKSCNSFSAGQLLMMREIEKR----TGKPAAFIETDLVDPRYF 404
Query: 394 STEQYNTRVQGLVEIMQERK 413
S R++ +++ +++
Sbjct: 405 SHANVKNRLESYFQMVDQKR 424
>gi|56478437|ref|YP_160026.1| benzoyl CoA reductase subunit [Azoarcus sp. EbN1]
gi|56314480|emb|CAI09125.1| Benzoyl CoA reductase subunit [Azoarcus sp. EbN1]
Length = 437
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 103/427 (24%), Positives = 179/427 (41%), Gaps = 58/427 (13%)
Query: 31 DKVYANAWEAKKRGELVGWSSSKFPIELAKAF---DLNVVYPENHAASAAAKKDGLRLC- 86
++ Y N AK++G + WS S + ++ A D+ + E +AA+ A + + C
Sbjct: 24 EQYYQNYARAKEKGG-IRWSGSAWALDAIPAGLGEDVYSLTGEPYAAAVAHDRKFAKECM 82
Query: 87 QAAEDMGYDNDICGYARISLA------YAAGEPTDARRMPQPDFLLCCNNICNMMTKWYE 140
AAE G+ D+C Y RI YA G P+PDF+ IC +KWY+
Sbjct: 83 DAAEAYGFARDLCSYMRIYWGGMHLNKYAFGG-----EFPKPDFVFQ-TQICCSHSKWYQ 136
Query: 141 NIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDACA 200
++A+ +P +D+ D + ++DY+ Q I+ +E+ +G+KFD++ F A
Sbjct: 137 HVAKEEKVPEFYLDVGVGPYRDMTDARLDYVANQLHDGIEFVEKASGRKFDDELFIKAVK 196
Query: 201 RANRTAAAWLKACKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAIGFELLADEFEQSIK 260
R+ + W C KP+PL +++ + + A + L +E + +
Sbjct: 197 NEMRSTSRWADICALNKVKPAPLDEKTMYSLYVLCTLQKSSQWCADFMDELYEEVKDRVA 256
Query: 261 EGTSTWEYPEEH-RILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYHNIREMA 319
G + P E R++ + P W LK +F L+ G AV + F I E
Sbjct: 257 RGIAA--VPNESVRLMTDTQPPWSFLK-IFRYLETYG----AVSIGSLYTFALEGIWEDK 309
Query: 320 AAYCKAPCSVCIETGVE--------------------WRE------------TMAKENGI 347
++ E G+E W+ + +E +
Sbjct: 310 PDGSWGGRTLPWEKGIEINDRATAVRLYADWNLSKPQWQHFYDPRIKSEMMLRIIREWQV 369
Query: 348 SGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVE 407
G +++ NR C+ S + E R GIPV+ F+G+ DER F + RV +E
Sbjct: 370 DGVMLHLNRGCEGLSIGIME-NRLAIAKAGIPVMTFEGNMGDEREFDEVRTQARVDAFME 428
Query: 408 IMQERKE 414
+ R++
Sbjct: 429 QLGMRRQ 435
>gi|46202064|ref|ZP_00208366.1| COG1775: Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase
subunit, BcrC/BadD/HgdB [Magnetospirillum
magnetotacticum MS-1]
Length = 421
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 93/380 (24%), Positives = 160/380 (42%), Gaps = 27/380 (7%)
Query: 57 ELAKAFDLNVVYPENHAASAAAKKDGLRLCQAAEDMGYDNDICGYARISLAYAA--GEPT 114
EL FD+ PE +A A +K AE G+ D+C Y + + +
Sbjct: 36 ELLMCFDIVNNLPEINAIQAGMRKASGGYIMEAEKSGHSEDVCTYVKADIGQMSKGNIAP 95
Query: 115 DARRMPQPDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQ 174
+ + P PD L+ C KW+E + + P +M+ +P+ + + DY++ Q
Sbjct: 96 NGKPYPVPDVLMLSYTGCYTFMKWFELLREEYKCPTLMLHVPYEGDGHSTKNMRDYIVKQ 155
Query: 175 FDH-AIKQLEELTGKKFDEKKFEDACARANRTAAAWLKACKYMGYKPSPLSG-FDLFNHM 232
I LE+++G KFD + + + + + KPSP+ F ++
Sbjct: 156 LKEVVIPGLEQVSGVKFDIDRLRQYLKNSAKAEDDLVWCLEQGKVKPSPIDAYFGGVYYI 215
Query: 233 ADIVAA-RCDEEAAIGFELLADEFEQSIK--EGTSTWE----YPEEHRILFEGIPCWPGL 285
I A R E+A +E+L E + I+ +G T E +++R++ EG P W
Sbjct: 216 GPIFTAFRGTEDAVSYYEMLRKEVQGRIENHQGPMTPEGTYFNDQKYRLIVEGPPNWTNF 275
Query: 286 KPLFEPLKDNGVNVTAVVYAPAF-----GFRY--HNIREMAAAYC-KAPCSVCIETGVEW 337
+ ++ D G V A Y GFR+ N E A YC ++ + T V+
Sbjct: 276 REFWKMFYDEGAVVVASSYTKVGGLYDQGFRHDPDNPLESLADYCLGCYTNLNLPTRVDL 335
Query: 338 RETMAKENGISGALVNYNRSCKPWSGA----MPEIERRWKEDLGIPVVHFDGDQADERNF 393
+E G L+N +SC +S M E+ERR G P + D D R F
Sbjct: 336 LAKYVEEYEADGLLINSIKSCNSFSAGQLMIMKEVERR----TGRPGAFIETDLVDPRYF 391
Query: 394 STEQYNTRVQGLVEIMQERK 413
S R++ +++++++
Sbjct: 392 SAANVKNRLESYFQMIEQKR 411
>gi|83311239|ref|YP_421503.1| B-subunit of benzoyl-CoA reductase [Magnetospirillum magneticum
AMB-1]
gi|82946080|dbj|BAE50944.1| B-subunit of benzoyl-CoA reductase [Magnetospirillum magneticum
AMB-1]
Length = 432
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 96/381 (25%), Positives = 160/381 (41%), Gaps = 29/381 (7%)
Query: 57 ELAKAFDLNVVYPENHAASAAAKKDGLRLCQAAEDMGYDNDICGYARISLAYAA--GEPT 114
EL FD+ PE +A A +K AE G+ D+C Y + + +
Sbjct: 47 ELLMCFDIVNNLPEINAIQAGMRKASGGYIMEAEKSGHSEDVCTYVKADIGQMSKGNIAP 106
Query: 115 DARRMPQPDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQ 174
+ + P PD L+ C KW+E + + P +M+ +P+ + + DY++ Q
Sbjct: 107 NGKPYPNPDVLMLSYTGCYTFMKWFELLREEYKCPTLMLHVPYEGDGHSTKNMRDYIVKQ 166
Query: 175 FDH-AIKQLEELTGKKFDEKKFEDACARANRTAAAWLKACKYMG-YKPSPLSG-FDLFNH 231
I LE+++G KFD + R + A L C G KPSP+ F +
Sbjct: 167 LKEVVIPGLEQVSGVKFDIDRLRQYL-RNSAKAEDNLVWCLEQGKVKPSPIDAYFGGVYY 225
Query: 232 MADIVAA-RCDEEAAIGFELLADEFEQSIKEGT------STWEYPEEHRILFEGIPCWPG 284
+ I A R E+A +E+L E + I+ T+ +++R++ EG P W
Sbjct: 226 IGPIFTAFRGTEDAVSYYEMLRKEVQGRIENHQGPLTPEGTYFNDQKYRLIVEGPPNWTN 285
Query: 285 LKPLFEPLKDNGVNVTAVVYAPAF-----GFRY--HNIREMAAAYC-KAPCSVCIETGVE 336
+ ++ D G V A Y GFR+ N E A YC ++ + T V+
Sbjct: 286 FREFWKMFYDEGAIVVASSYTKVGGLYDQGFRHDPDNPLESLADYCLGCYTNLNLPTRVD 345
Query: 337 WRETMAKENGISGALVNYNRSCKPWSGA----MPEIERRWKEDLGIPVVHFDGDQADERN 392
+E G L+N +SC +S M E+ERR G P + D D R
Sbjct: 346 LLAKYVEEYEADGLLINSIKSCNSFSAGQLMIMKEVERR----TGRPGAFIETDLVDPRY 401
Query: 393 FSTEQYNTRVQGLVEIMQERK 413
FS R++ +++++++
Sbjct: 402 FSAANVKNRLESYFQMIEQKR 422
>gi|45649068|gb|AAQ08807.1| BzdO [Azoarcus sp. CIB]
Length = 437
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 103/423 (24%), Positives = 179/423 (42%), Gaps = 50/423 (11%)
Query: 31 DKVYANAWEAKKRGELVGWSSSKFPIELAKAF---DLNVVYPENHAASAAAKKDGLRLC- 86
++ Y N AK++G + WS S + ++ A D+ + E +AA+ A + + C
Sbjct: 24 EQYYMNYARAKEKGG-IRWSGSAWALDAIPAGLGEDVYSLTGEPYAAAVAHDRKFAKECM 82
Query: 87 QAAEDMGYDNDICGYARISLA------YAAGEPTDARRMPQPDFLLCCNNICNMMTKWYE 140
AAE G+ D+C Y RI YA G P+PDF+ IC +KWY+
Sbjct: 83 DAAEAYGFARDLCSYMRIYWGGMHLNKYAFGG-----EFPKPDFVFQ-TQICCSHSKWYQ 136
Query: 141 NIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDACA 200
++A+ IP +D+ D + ++DY+ Q I +E+ +G+KFD++ F A
Sbjct: 137 HVAKEEKIPEFYLDVGVGPYRDMTDARLDYVANQLHDGIAFVEKASGRKFDDELFIKAVK 196
Query: 201 RANRTAAAWLKACKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAIGFELLADEFEQSIK 260
R+ + W C KP+PL +++ ++ + A + L +E + +
Sbjct: 197 NEMRSTSRWADICALNKVKPAPLDEKTMYSLYVLCTLSKSSQWCADFMDELYEEVKDRVA 256
Query: 261 EGTSTWEYPEEH-RILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYHNIREMA 319
G + P E R++ + P W LK +F L+ G +Y A + + + +
Sbjct: 257 RGIAA--VPNEAIRLMTDTQPPWSFLK-IFRYLETYGAVSIGSLYTFALEGIWEDKPDGS 313
Query: 320 AAYCKAPCSVCIE-----TGV-----------EWRE------------TMAKENGISGAL 351
P IE T V +W+ + KE + G +
Sbjct: 314 WGGRTLPWDKGIEINDRDTAVRLYADWNLSKPQWQHFYDPTIKSDMMLRIIKEWQVDGVM 373
Query: 352 VNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQE 411
++ NR C+ S + E R G PV+ F+G+ DER F + RV +E +
Sbjct: 374 LHLNRGCEGLSVGIME-NRLAIAKSGTPVMTFEGNMGDEREFDEVRTQARVDAFMEQLGV 432
Query: 412 RKE 414
R++
Sbjct: 433 RRQ 435
>gi|56475814|ref|YP_157403.1| benzoyl CoA reductase subunit [Azoarcus sp. EbN1]
gi|56311857|emb|CAI06502.1| Benzoyl CoA reductase subunit [Azoarcus sp. EbN1]
Length = 434
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 99/425 (23%), Positives = 175/425 (41%), Gaps = 56/425 (13%)
Query: 31 DKVYANAWEAKKRGEL----VGWSSSKFPIELAKAFDLNVVYP---ENHAASAAAKKDGL 83
++ Y N AK G + GWS P L + VYP E ++A + +
Sbjct: 21 EQYYQNFARAKDNGGIRWSAAGWSFDAIPTSLG-----DDVYPLTGEPYSAGVSLDRKFT 75
Query: 84 RLC-QAAEDMGYDNDICGYARISL-AYAAGEPTDARRMPQPDFLLCCNNICNMMTKWYEN 141
+ C AAE G+ D+C Y RI + E + P DF+ IC KWY++
Sbjct: 76 QRCLDAAESYGFARDMCSYMRIYWGSMHLDEYFYGGKWPTSDFIFQ-TQICCSHAKWYQH 134
Query: 142 IARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDACAR 201
++R IP +D+ D + +DY+ Q +I+ +E+ TG+K D++ A
Sbjct: 135 VSRTKKIPDFYVDVSVGAYKDLTSDSLDYVTSQLHDSIEFVEKATGRKCDDELLIRAIKN 194
Query: 202 ANRTAAAWLKACKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAIGFELLADEFEQSIKE 261
R+ A W + C+ P+PL +++ + + + A ++ L +E + +
Sbjct: 195 EMRSTARWAQICELQKAVPAPLDEKTMYSLYVLAILHKSSQWCADFYDELYEEVKDRVAR 254
Query: 262 GTSTWEYPEEH-RILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYHNIREMAA 320
G + P E R++ + P WP LK +F L+ G AV + F E
Sbjct: 255 GIAA--VPNERCRLMSDTQPPWPFLK-IFRYLETYG----AVSIGSLYTFGLEGTWEYKE 307
Query: 321 AYCKAPCSVCIETGVE--------------------WRE------------TMAKENGIS 348
++ E G+E W++ +A++ +
Sbjct: 308 DGSWGARTLPWEKGIEMNDRDTALRLYADWNLSKPLWQQFFDPSVKSEMMLNIARDWNVD 367
Query: 349 GALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEI 408
G +++ NR C+ S + E R+ GIP++ ++G+ DER F + RV +E
Sbjct: 368 GCMMHLNRGCEGLSVGIME-NRQAIAKAGIPIMTYEGNMGDEREFDEVRTQARVDAFMEQ 426
Query: 409 MQERK 413
+ R+
Sbjct: 427 LGLRR 431
>gi|18369656|emb|CAD21629.1| benzoyl CoA reductase subunit [Azoarcus evansii]
Length = 434
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 100/427 (23%), Positives = 180/427 (42%), Gaps = 58/427 (13%)
Query: 31 DKVYANAWEAKKRGELVGWSSSKFPIELAKAF---DLNVVYPENHAASAAAKKDGLRLC- 86
++ Y N AK++G + WS S + ++ A D+ + E +AA+ A + + C
Sbjct: 21 EQYYMNYARAKEKGG-IRWSGSAWALDAIPAGLGEDVYSLTGEPYAAAVAHDRKFAKECM 79
Query: 87 QAAEDMGYDNDICGYARISLA------YAAGEPTDARRMPQPDFLLCCNNICNMMTKWYE 140
AAE G+ D+C Y RI YA G P+PDF+ IC +KWY+
Sbjct: 80 DAAEAYGFARDLCSYMRIYWGGMHLNKYAFGG-----EFPKPDFVFQ-TQICCSHSKWYQ 133
Query: 141 NIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQLEELTGKKFDEKKFEDACA 200
++A+ IP +D+ D + ++DY+ Q I+ +++ +G++F+++ F +A
Sbjct: 134 HVAKEEKIPEFYLDVGVGPYKDMTDARLDYVANQLHDGIEFVQKASGREFNDELFIEAVK 193
Query: 201 RANRTAAAWLKACKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAIGFELLADEFEQSIK 260
R+ + W C KP+PL +++ ++ + A + L +E + +
Sbjct: 194 NEMRSTSRWADICALNKVKPAPLDEKTMYSLYVLCTLSKSSKWCADFMDELYEEVKDRVA 253
Query: 261 EGTSTWEYPEEH-RILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYHNIREMA 319
G + P E R++ + P W LK +F L+ G AV + F I E
Sbjct: 254 RGIAA--VPNETIRLMTDTQPPWSFLK-IFRYLETYG----AVSIGSLYTFALEGIWEEK 306
Query: 320 AAYCKAPCSVCIETGVEWRE--------------------------------TMAKENGI 347
A ++ G+E ++ + KE +
Sbjct: 307 ADGTWGGRTLPWNKGIEIKDRATAVRLYADWNLSKPQWQHFYDPTIKSDMMLRIIKEWQV 366
Query: 348 SGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVE 407
G +++ NR C+ S + E R G PV+ F+G+ DER F + RV +E
Sbjct: 367 DGVMLHLNRGCEGLSVGIME-NRLAIAKSGTPVMTFEGNMGDEREFDEVRTQARVDAFME 425
Query: 408 IMQERKE 414
+ R++
Sbjct: 426 QLGVRRQ 432
>gi|51850068|dbj|BAD42372.1| putative B-subunit of benzoyl-CoA reductase [Magnetospirillum sp.
TS-6]
Length = 433
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 92/382 (24%), Positives = 158/382 (41%), Gaps = 32/382 (8%)
Query: 57 ELAKAFDLNVVYPENHAASAAAKKDGLRLCQAAEDMGYDNDICGYARISLAYAA--GEPT 114
EL +D+ PE +A A +K AE G+ D+C Y + + +
Sbjct: 47 ELLMCYDIVNNLPEINAIQAGMRKASGGYIMEAEKSGHSEDVCTYVKADIGQMSKGNIAP 106
Query: 115 DARRMPQPDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQ 174
+ R P PD L+ C KW+E + + P +M+ +P+ + + DY++ Q
Sbjct: 107 NGRPYPNPDVLMLSYTGCYTFMKWFELLREEYKCPTLMLHVPYEGDGHSTKHMRDYIVKQ 166
Query: 175 FDH-AIKQLEELTGKKFDEKKFEDAC---ARANRTAAAWLKACKYMGYKPSPLSG-FDLF 229
I LE+++G KFD + A+A L+ K PSP+ F
Sbjct: 167 LKEVVIPGLEQVSGVKFDIDRLRQYLRNRAKAEDNLVWRLEQGK--NKPPSPIDAYFGGV 224
Query: 230 NHMADIVAA-RCDEEAAIGFELLADEFEQSIKEGT------STWEYPEEHRILFEGIPCW 282
++ I A R E+A +E++ E + ++ T+ +++R++ EG P W
Sbjct: 225 YYIGPIFTAFRGTEDAVTYYEIVRKEVQNRVENHQGPLTPEGTYFNDQKYRLIVEGPPNW 284
Query: 283 PGLKPLFEPLKDNGVNVTAVVYAPAF-----GFRY--HNIREMAAAYC-KAPCSVCIETG 334
+ ++ D G V A Y GFR+ N E A YC ++ + T
Sbjct: 285 TNFREFWKMFYDEGAIVVASSYTKVGGLYDQGFRHDPDNPLESLADYCLGCYTNLNLPTR 344
Query: 335 VEWRETMAKENGISGALVNYNRSCKPWSGA----MPEIERRWKEDLGIPVVHFDGDQADE 390
V+ +E G L+N +SC +S M E+ERR G P + D D
Sbjct: 345 VDLLAKYVEEYEADGLLINSIKSCNSFSAGQLMIMKEVERR----TGRPGAFIETDLVDP 400
Query: 391 RNFSTEQYNTRVQGLVEIMQER 412
R FS R++ ++++++
Sbjct: 401 RYFSAANVKNRLESYFQMIEQK 422
>gi|91200822|emb|CAJ73876.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]
Length = 455
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 91/376 (24%), Positives = 157/376 (41%), Gaps = 26/376 (6%)
Query: 49 WSSSKFPIELAKAFDLNVVYPENHAASAAAKKDGLRLCQAAEDMGYDNDICGYARISLAY 108
W++ P E+ A L E AA A R AE G DIC + R ++ +
Sbjct: 83 WTTMFVPSEILFAMGLYPFCLEIGAALFAGIGQSSRGLIEAESRGVSTDICTFHRAAIGH 142
Query: 109 AAGEPTDARRMPQPDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEKV 168
A P+ + + +C+ TK + + I+IDIP+ + E V
Sbjct: 143 AY-----RNIFPRNILQVATSTLCDNNTKTAKLCECLTGKDTIVIDIPY----EEDEYSV 193
Query: 169 DYLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLKACKYMGYKPSPLSGFDL 228
YL Q + +K LE+ TG+K + E A +N+T L+ + PL G
Sbjct: 194 QYLAKQLEDLVKYLEKTTGRKMRHEALERAFEYSNKTREKILEINELRKDPLCPLKGSSA 253
Query: 229 FNHMADIVAARCDEEAAIGFELLADEFEQSIKEG-TSTWEYPEEHRILFEGIPCWPGLKP 287
M A + LA+E + I E T + + P ++I W LKP
Sbjct: 254 LGFMFPTYLLIGSGLALEFYSSLANELREKIAENKTKSPKIPPTNQIKI----LWLELKP 309
Query: 288 LFE-------PLKDNGVNV---TAVVYAPAFGFRYHNIREMAAAYCKAPCSVCIETGVEW 337
F K+N V T VY + +A + + +E +E
Sbjct: 310 YFNVDFLQNLEEKENVKIVFEETNYVYWDKLDVQ-KPYESLARKHIMNTYNGPLERRIEV 368
Query: 338 RETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQ 397
+ +A+E + G +V + C+ + A+P I++ + +G P + DGD D++N+ Q
Sbjct: 369 AKMLAREYDVDGVVVFSSWGCRRNNAAVPTIKKELNK-IGYPFLSLDGDCVDDKNYMPGQ 427
Query: 398 YNTRVQGLVEIMQERK 413
++TR++G +E+++ R+
Sbjct: 428 FSTRIEGFLEMIRGRR 443
>gi|118743517|ref|ZP_01591520.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Geobacter lovleyi
SZ]
gi|118683525|gb|EAV89921.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Geobacter lovleyi
SZ]
Length = 425
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 85/381 (22%), Positives = 143/381 (37%), Gaps = 26/381 (6%)
Query: 57 ELAKAFDLNVVYPENHAASAAAKKDGLRLCQAAEDMGYDNDICGYARISLA-YAAGEPTD 115
EL AF++ + PE + +A L Q AE+ GY +DIC Y + + + G
Sbjct: 44 ELLAAFEIPLFLPEINCLQSAVNGTAQGLLQHAEEQGYPSDICNYLKADVGLHLQGRRLP 103
Query: 116 ARRMPQPDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEKVD------ 169
+R+P P L + CN KW E R++++PL + DIP S P D
Sbjct: 104 HKRLPAP-CLAIASTACNTYIKWAEIWQRLYDMPLFVFDIPGSRNPARPSWPGDPGFAAD 162
Query: 170 --YLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLKACKYMGYKPSPLSGFD 227
Y++ Q I E ++G++ D + A NR A+ + +P+
Sbjct: 163 LAYVMEQVRSLISLCERISGRRLDPDRLSHALDCTNRMGDAFRQMLAMNRQEPACFDAVR 222
Query: 228 LFNHMADIVAARCDEEAAIGFELLADEFEQSIKEGTSTWEYPEE--HRILFEGIPCWPGL 285
+ A EA + + A E I++ E P E R+LF G+PC+P
Sbjct: 223 QGGAYLGVFNAYRGSEAGVRYFRNALEELLQIRQ-RCLREPPAEAPFRLLFAGLPCYPLY 281
Query: 286 KPLFEPLKDNG---VNVTAVVYAPA---FGFRYHNIREMAA------AYCKAPCSVCIET 333
G V T + +A +R+ R + + +
Sbjct: 282 SSFIRMFSTQGGLFVRSTYLQFASGGANLEYRFDTGRPVESFAEGLLLTTREAMDSMFLA 341
Query: 334 GVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNF 393
G E A G + + +SC+ S + + +P + + D D R
Sbjct: 342 GDRLFEAQAACKA-DGVVFHGVKSCRTVSTGLADARLALLSRSSVPTLLLESDMMDRRLI 400
Query: 394 STEQYNTRVQGLVEIMQERKE 414
S Q R+ E ++ R++
Sbjct: 401 SPAQMQNRIDAFFETLRLRRQ 421
>gi|89210740|ref|ZP_01189126.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Halothermothrix
orenii H 168]
gi|89159710|gb|EAR79372.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Halothermothrix
orenii H 168]
Length = 426
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 94/379 (24%), Positives = 158/379 (41%), Gaps = 43/379 (11%)
Query: 47 VGWSSSKFPIELAKAFDLNVVYPENHAASAAAKKDGLRLCQAAEDMGYDNDICGYARISL 106
V W S+ P EL A PE A AAA + AE+ +D+C R
Sbjct: 67 VIWCSTFVPSELVYALGGVPFMPEVAAGLAAALGVADDFLRQAEEDWISSDLCSIHRCGW 126
Query: 107 AYAAGEPTDARRMPQPDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEE 166
T A +P+PD ++ +++C+ K+ + I+ IP +++ P+ P++
Sbjct: 127 GL-----TKAGLLPEPDLIIAASHLCDGAKKYLQQISYYKGIPFYLLETPYH-----PDD 176
Query: 167 KVDYLIGQFDHAIKQL-EELTGKKFDEKKFEDACARANRTAAAWLKACKYMGYKPSPLSG 225
D+L H IK L EL G K D FE +NR A + + P+P+SG
Sbjct: 177 -ADWLA----HQIKDLVRELGGVKED---FETVFTYSNRAYRAHQRVNQLRKKIPAPMSG 228
Query: 226 FDLFNHMADIVAARCDEEAAIGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGL 285
+ N ++ + A + L E ++ IKE E+HR+L W L
Sbjct: 229 EEAMNLVSMEFMSSGSPAAVNYYRTLEKELKKRIKEKKGVVPR-EKHRLL------WLHL 281
Query: 286 KP-----LFEPLKDNGVNVTAVVYAPAFGFRYHNIR-------EMAAAYCKAPCSVCIET 333
KP +F L N + Y+ + + + +M + P +E
Sbjct: 282 KPYYRQEIFTTLARNDAVIAFEEYSQLYWLPLDSTKPYQSLAWKMINHFGWGP----LER 337
Query: 334 GVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNF 393
+E M + I G + + C+ SG +++ ++ GIP ++ DGD D RN+
Sbjct: 338 QLERIRKMVIDYNIDGVIGFSHWGCRQSSGRNGFLKKELQKK-GIPFLNLDGDLVDIRNY 396
Query: 394 STEQYNTRVQGLVEIMQER 412
Q TR+Q +E+++ R
Sbjct: 397 REGQIITRLQAFIEVLESR 415
>gi|153852899|ref|ZP_01994336.1| hypothetical protein DORLON_00318 [Dorea longicatena DSM 13814]
gi|149754541|gb|EDM64472.1| hypothetical protein DORLON_00318 [Dorea longicatena DSM 13814]
Length = 434
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 90/386 (23%), Positives = 156/386 (40%), Gaps = 47/386 (12%)
Query: 55 PIELAKAFDLNVVYPENHAASAAAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPT 114
P E+ + L+ E + +A K Q AE+ G +C Y + + A
Sbjct: 78 PCEILQEAGLHPYNVEGFSCYLSASKAERAFLQQAENTGISETLCSYHKTFIGAA----- 132
Query: 115 DARRMPQPDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQ 174
+ +P+P ++ N C+ ++ +A+M+++P+ ID+P E+ V Y+ Q
Sbjct: 133 QKKVLPKPKCIVYTNLTCDANLLTFKKLAKMYDVPIFAIDVPMQQN----EDNVQYVADQ 188
Query: 175 FDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLKACKYMG--YKPSPLSGFDLFNHM 232
+EE TGKK ++ + R+ RT + + K Y P+ L L+ M
Sbjct: 189 LRKLKDFIEECTGKKITDETLTERLRRSKRTLEKFAQYEKESADRYIPADLVT-PLYAGM 247
Query: 233 ADIVAARCDEEAAIGFELLADEFEQSIKEGTST--------WEYPEEHRILFE------G 278
+ + +EE LL D + K+G W ++ + F+ G
Sbjct: 248 TNNLLLGTEEEETYVDRLLNDVKKAPAKKGKKIYWMHTIPFWSDAVKNELCFQEKAQIVG 307
Query: 279 IPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYHNIREMAAAYCKAPCSVCIETGVEWR 338
+P F+P K +VY G IR IE G+
Sbjct: 308 CELSRVCEPDFDPEKPYEAMARRMVYHALNG---SAIRR-------------IEAGIR-- 349
Query: 339 ETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQY 398
AKE G GA+ + CK GA +R+++E GIP++ DGD D + Q
Sbjct: 350 --HAKETGADGAVWFGHWGCKHTIGAAQLAKRKFEEQ-GIPLLILDGDGCDRSHGGEGQT 406
Query: 399 NTRVQGLVEIMQERKEEKLAKGEEVY 424
+TR+ +E++ +E + EE++
Sbjct: 407 STRLGAFLEMLNTETDENTDRQEELH 432
>gi|153813155|ref|ZP_01965823.1| hypothetical protein RUMOBE_03564 [Ruminococcus obeum ATCC 29174]
gi|149830810|gb|EDM85900.1| hypothetical protein RUMOBE_03564 [Ruminococcus obeum ATCC 29174]
Length = 379
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 85/371 (22%), Positives = 146/371 (39%), Gaps = 35/371 (9%)
Query: 55 PIELAKAFDLNVVYPENHAASAAAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPT 114
P EL + L E+ + A + Q AED G +C Y + + A
Sbjct: 34 PCELIQEAGLYPYNVESFSCYLTASQAERAFLQNAEDSGLSETLCSYHKTFIGAA----- 88
Query: 115 DARRMPQPDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQ 174
+ +P+P ++ N C+ + +A +++P+ ID+P T V Y+ Q
Sbjct: 89 EKGLLPKPKCIVYTNLACDANLLTFHRLAEFYHVPVFSIDVPSRQTA----SNVAYVAAQ 144
Query: 175 FDHAIKQLEELTGKKFDEKKFEDACARANRTAAAW--LKACKYMGYKPSPLSGFDLFNHM 232
+ LE+ TG+ DE + AR T + ++ + + PS L L++ M
Sbjct: 145 LRALKRFLEQTTGRLIDEDLLAERVARGRETLEEFEKFQSARADRFIPSDLVS-PLYSGM 203
Query: 233 ADIVAARCDEEAAIGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWP-GLKPLFEP 291
+ + +EE +LL D K+G +H IP W +K
Sbjct: 204 TNNILLGTEEEKLYTEKLLKDIKNAPPKKG--------KHIYWMHTIPFWSDAVKEAL-- 253
Query: 292 LKDNGVNVTAVVYAPAFGFRYHN---IREMAAAYC----KAPCSVCIETGVEWRETMAKE 344
L ++ + + H+ EMA P S IE G+ AK+
Sbjct: 254 LLNDSAQIVGCELSQVADLSVHSEDPYEEMAMRLVYHALNGPISRRIEAGIH----HAKQ 309
Query: 345 NGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQG 404
G GA+ + CK G ++R+ E+ GIP++ DGD D + Q +TR+
Sbjct: 310 AGADGAVWFNHWGCKHTLGGSRIAKKRF-EEAGIPMLILDGDGCDRSHGGEGQTSTRLGA 368
Query: 405 LVEIMQERKEE 415
+E++ + E
Sbjct: 369 FLEMLGDFDHE 379
>gi|76796295|ref|ZP_00778660.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Thermoanaerobacter
ethanolicus ATCC 33223]
gi|76588332|gb|EAO64739.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Thermoanaerobacter
ethanolicus ATCC 33223]
Length = 416
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 78/372 (20%), Positives = 147/372 (39%), Gaps = 35/372 (9%)
Query: 48 GWSSSKFPIELAKAFDLNVVYPENHAASAAAKKDGLRLCQAAEDMGYDNDICGYARISLA 107
W + P E A D+ ++ E +++ + L AE G N +C Y + +
Sbjct: 70 AWVNLFAPSEFLIAMDIKPLFIEAYSSFMSGFFIEDYLVDTAESRGMSNTLCSYHKTFIG 129
Query: 108 YAAGEPTDARRMPQPDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEK 167
++ + +P F++ + IC+ ++ +++ H +PL +IDIP+ + D
Sbjct: 130 -----ASELNILKKPKFMMTTSMICDANIPTFKYLSKKHGVPLYIIDIPYKYSKDA---- 180
Query: 168 VDYLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLKACKYMGYKPS-PLSGF 226
V Y+ Q ++LEE+ +K D K + N+T A + Y G K P F
Sbjct: 181 VVYVKKQLLEVAEKLEEVFNRKLDTDKLREVVKTENKTRALMREYLNYAGEKRFLPTMTF 240
Query: 227 DLFNHMADIVAARCDEEAAIGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLK 286
+++ A V E +E+L ++ +++ + + I F L
Sbjct: 241 EMYMLFASHVFIGSKEVLHF-YEMLVEDIKRAPERSGKS--------IFF------IHLL 285
Query: 287 PLFEPLKDNGVNVTAVVYAPAFGFRYHNIRE---------MAAAYCKAPCSVCIETGVEW 337
P+FE + N + Y + E +A + I V
Sbjct: 286 PMFEKNFKDYFNFNDKFHIAGSDLNYDFLEEIDENDPFKGIAEKLILNSFNGEINRKVAR 345
Query: 338 RETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQ 397
+ ++ G + + CK G I + +LGIP ++ DGD D+RN Q
Sbjct: 346 IRELIEKIKPDGIIQFCHLGCKQSMGGT-FIIKNLASELGIPFLYLDGDCVDKRNNQEGQ 404
Query: 398 YNTRVQGLVEIM 409
TR++ +E++
Sbjct: 405 NRTRLEAFLEML 416
>gi|78043095|ref|YP_360029.1| putative (R)-2-hydroxyglutaryl-CoA dehydratase, alpha subunit
[Carboxydothermus hydrogenoformans Z-2901]
gi|77995210|gb|ABB14109.1| putative (R)-2-hydroxyglutaryl-CoA dehydratase, alpha subunit
[Carboxydothermus hydrogenoformans Z-2901]
Length = 402
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 77/373 (20%), Positives = 152/373 (40%), Gaps = 37/373 (9%)
Query: 48 GWSSSKFPIELAKAFDLNVVYPENHAASAAAKKDGLRLCQAAEDMGYDNDICGYARISLA 107
W + P E A D+ ++ E +++ + L AE G N +C Y + +
Sbjct: 56 AWVNIFSPCEFLIALDIKPLFIEAYSSFMSGFFIEDYLIDTAESRGIANTLCSYHKTFIG 115
Query: 108 YAAGEPTDARRMPQPDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEK 167
+ + + +P+F+L ++IC+ + +++ N+PL +ID+P+ + +E
Sbjct: 116 -----ANELKILKKPEFMLTTSSICDANVPTFRYLSKKQNVPLYIIDVPYKYS----KEA 166
Query: 168 VDYLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLKACKYMGYKP--SPLSG 225
V Y+ Q ++ LEE+ +K D K + N+T K Y+ K P++
Sbjct: 167 VAYVKNQLIEMVENLEEVFKRKLDLDKLREVVKIENKTRTLINKYLNYLKEKTLLVPMT- 225
Query: 226 FDLFNHMADIVAARCDEEAAIGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGL 285
F+++ A + E +E+L D+ + + P + +F + L
Sbjct: 226 FEMYMLFASHIFIGSKEMLKF-YEMLLDDIKNAP---------PRSGKSIF-----FVHL 270
Query: 286 KPLFEPLKDNGVNVTAVVYAPA--FGFRYHN-------IREMAAAYCKAPCSVCIETGVE 336
P+FE + N + + F Y + R +A + +E V
Sbjct: 271 LPIFEKNFQDYFNFSNKFHIAGSDLNFDYLDEIDEKDPFRGIAEKLILNTFNGEMERKVT 330
Query: 337 WRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTE 396
+ ++ G + + CK G I + +GIP ++ DGD D+RN
Sbjct: 331 RIRELIEKIKPDGIIQFCHLGCKQSIGGT-FIIKDLATKMGIPFLYLDGDCVDKRNNQVG 389
Query: 397 QYNTRVQGLVEIM 409
Q TR++ +E++
Sbjct: 390 QNRTRLEAFLEML 402
>gi|114843950|ref|ZP_01454408.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Thermoanaerobacter
ethanolicus X514]
gi|114806007|gb|EAU57790.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Thermoanaerobacter
ethanolicus X514]
Length = 416
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 77/372 (20%), Positives = 147/372 (39%), Gaps = 35/372 (9%)
Query: 48 GWSSSKFPIELAKAFDLNVVYPENHAASAAAKKDGLRLCQAAEDMGYDNDICGYARISLA 107
W + P E A D+ ++ E +++ + L AE G N +C Y + +
Sbjct: 70 AWVNLFAPSEFLIAMDIKPLFIEAYSSFMSGFFIEDYLVDTAESRGMSNTLCSYHKTFIG 129
Query: 108 YAAGEPTDARRMPQPDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEK 167
++ + +P F++ + IC+ ++ +++ H +PL +IDIP+ + D
Sbjct: 130 -----ASELNILKKPKFMMTTSMICDANIPTFKYLSKKHGVPLYIIDIPYKYSKDA---- 180
Query: 168 VDYLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLKACKYMGYKPS-PLSGF 226
V Y+ Q ++LEE+ +K D K + N+T A + + G K P F
Sbjct: 181 VVYVKKQLLEVAEKLEEVFNRKLDTDKLREVVKTENKTRALMREYLNHAGEKRFLPTMTF 240
Query: 227 DLFNHMADIVAARCDEEAAIGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLK 286
+++ A V E +E+L ++ +++ + + I F L
Sbjct: 241 EMYMLFASHVFIGSKEVLHF-YEMLVEDIKRAPERSGKS--------IFF------IHLL 285
Query: 287 PLFEPLKDNGVNVTAVVYAPAFGFRYHNIRE---------MAAAYCKAPCSVCIETGVEW 337
P+FE + N + Y + E +A + I V
Sbjct: 286 PMFEKNFKDYFNFNDKFHIAGSDLNYDFLEEIDENDPFKGIAEKLILNSFNGEINRKVAR 345
Query: 338 RETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQ 397
+ ++ G + + CK G I + +LGIP ++ DGD D+RN Q
Sbjct: 346 IRELIEKIKPDGIIQFCHLGCKQSMGGT-FIIKNLASELGIPFLYLDGDCVDKRNNQEGQ 404
Query: 398 YNTRVQGLVEIM 409
TR++ +E++
Sbjct: 405 NRTRLEAFLEML 416
>gi|39997614|ref|NP_953565.1| (R)-2-hydroxyglutaryl-CoA dehydratase beta-subunit, putative
[Geobacter sulfurreducens PCA]
gi|39984506|gb|AAR35892.1| (R)-2-hydroxyglutaryl-CoA dehydratase beta-subunit, putative
[Geobacter sulfurreducens PCA]
Length = 387
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 74/302 (24%), Positives = 128/302 (42%), Gaps = 31/302 (10%)
Query: 123 DFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQL 182
DFLL C+ K YE + + P+ ++ +P E +DY + + +L
Sbjct: 96 DFLLA-ETTCDGKKKMYELLGELK--PIHVMQLPQIQD----EAALDYWLMEIGRLKTRL 148
Query: 183 EELTGKKFDEKKFEDACARAN---RTAAAWLKACKYMGYKPSPLSGFDLFNHMADIVAAR 239
E G + +K +A N R+ A CK + PSP+SG DL + +
Sbjct: 149 EREFGVRITDKALTEAIRLMNEERRSLQALQDVCKAI---PSPISGLDLLTVLHN-RGFS 204
Query: 240 CDEEAAIGF-ELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVN 298
D AAI + A E Q G S + RIL G+P G + L ++++G +
Sbjct: 205 VDRRAAIELVDRFAAELRQMAAAGISPFT-ESTPRILLTGVPVGVGSEKLIRIIEESGAS 263
Query: 299 VTAVVYAPAFGFRYHNIRE-------MAAAYCKAPCSVCIE--TG-VEWRETMAKENGIS 348
V + A+ + +RE +A Y K PCS C+ TG +E E + +E +
Sbjct: 264 VVCLESCGAYK-KVEQVREGGDPLRAIAERYLKVPCS-CMSPNTGRLELVERLTREFRVD 321
Query: 349 GALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEI 408
G + C ++ +++ ++ G+P + + D ++ T Q RV+ +EI
Sbjct: 322 GVVDLTWLGCHTYAVESSVLKKHLQQRTGLPFLQIETDYSES---DTGQLKVRVEAFLEI 378
Query: 409 MQ 410
+
Sbjct: 379 VH 380
>gi|20807575|ref|NP_622746.1| 2-hydroxyglutaryl-CoA dehydratase, subunit alpha
[Thermoanaerobacter tengcongensis MB4]
gi|20516112|gb|AAM24350.1| 2-hydroxyglutaryl-CoA dehydratase, subunit alpha
[Thermoanaerobacter tengcongensis MB4]
Length = 416
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 77/372 (20%), Positives = 148/372 (39%), Gaps = 35/372 (9%)
Query: 48 GWSSSKFPIELAKAFDLNVVYPENHAASAAAKKDGLRLCQAAEDMGYDNDICGYARISLA 107
W + P E A D+ ++ E +++ + L AE G N +C Y + +
Sbjct: 70 AWVNLFAPSEFLIAMDIKPLFIEAYSSFMSGFFIEDYLIDTAESRGMSNTLCSYHKTFIG 129
Query: 108 YAAGEPTDARRMPQPDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEK 167
++ + +P F++ + IC+ ++ +++ H +PL +IDIP+ + +
Sbjct: 130 -----ASELNILKKPKFMMTTSMICDANIPTFKYLSKKHGVPLYIIDIPYKYS----KNA 180
Query: 168 VDYLIGQFDHAIKQLEELTGKKFDEKKFEDACARANRTAAAWLKACKYMGYKP-SPLSGF 226
V Y+ Q ++L E+ +K D K + N+T A + Y G K P F
Sbjct: 181 VMYVKKQLLEVAEKLGEVFNRKLDIDKLREVVKTENKTRALMREYLNYAGEKRFIPTMTF 240
Query: 227 DLFNHMADIVAARCDEEAAIGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLK 286
+++ A V E +E+L ++ +++ + + I F L
Sbjct: 241 EMYMLFASHVFIGSKEVLHF-YEMLVEDIKRAPERSGKS--------IFF------IHLL 285
Query: 287 PLFEPLKDNGVNVTAVVYAPAFGFRYHNIRE---------MAAAYCKAPCSVCIETGVEW 337
P+FE + N + + Y + E +A + I V
Sbjct: 286 PIFEKNFKDYFNFSDKFHIAGSDLNYDFLDEIDENDPFKGIAEKLILNSFNGEINRRVAR 345
Query: 338 RETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQ 397
+ + ++ G + + CK G I+ E LGIP ++ DGD D+RN Q
Sbjct: 346 IKELIEKIKPDGIIQFCHLGCKQSMGGTFIIKNLASE-LGIPFLYLDGDCVDKRNNQEGQ 404
Query: 398 YNTRVQGLVEIM 409
TR++ +E++
Sbjct: 405 NRTRLEAFLEML 416
>gi|114565967|ref|YP_753121.1| (R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit, putative
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
gi|114336902|gb|ABI67750.1| (R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit, putative
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 424
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 82/315 (26%), Positives = 125/315 (39%), Gaps = 50/315 (15%)
Query: 122 PDFLLCCNNICNMMTKWYENIARMHNIPLIMIDIPFSNTVDTPEEKVDYLIGQFDHAIKQ 181
PD + N C+ K +E +A +P+ +IDIP E V + I
Sbjct: 135 PD-MYVAENTCDGKKKAWEILA--GEVPMHIIDIPQMKR----ERDVAAFAAEIRDFIGV 187
Query: 182 LEELTGKKFDEKKFEDACARANRTAAAWLKACKYMGYKPSPLSGFDLF-----NHMADIV 236
+E++TGKK + + +A N A + P P+SG D N D
Sbjct: 188 VEKVTGKKINAESLGEAIKLINNKRRALQRVYNARKASPVPISGKDALLVTQINFYDD-- 245
Query: 237 AARCDEEAAIGFELLADEFEQSIKEGTSTWEYPEEH-RILFEG----IPCWPGLKPLFEP 291
AR + A LADE EQ I GT +PE RI+ G IP W L + E
Sbjct: 246 PARAAQMA----NNLADELEQRINNGTGV--FPENAPRIMISGTPMAIPNWK-LHHIVES 298
Query: 292 LKDNGVNVTAVVYAPAFGFRY-------------HNIREMAAAYCKAPCSVCIETGVEWR 338
L VV G RY IR +A Y K C+
Sbjct: 299 L-----GAAIVVEESCTGTRYFENLVDETASTLDEQIRALAERYMKTNCACFTPNSARID 353
Query: 339 ET--MAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTE 396
+ +A E + G + + C +S I++ E +P++H + D + E++F E
Sbjct: 354 DIIRLADEYKVDGIIDTNLQFCNLYSTESYLIKQVMTER-NLPIIHIETDYS-EQDF--E 409
Query: 397 QYNTRVQGLVEIMQE 411
Q TRV+ +E++++
Sbjct: 410 QLRTRVEAFLEMLRK 424
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.318 0.134 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,779,770,207
Number of Sequences: 5470121
Number of extensions: 78163359
Number of successful extensions: 177572
Number of sequences better than 1.0e-05: 50
Number of HSP's better than 0.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 177442
Number of HSP's gapped (non-prelim): 66
length of query: 442
length of database: 1,894,087,724
effective HSP length: 136
effective length of query: 306
effective length of database: 1,150,151,268
effective search space: 351946288008
effective search space used: 351946288008
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)