BLASTX+BEAUTY Search Results

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BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.
BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.
BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract
Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract




processing output:
cycle 1
cycle 2
cycle 3
cycle 4
Repeat sequence:
   SW  perc perc perc  query             position in query    matching repeat        position in  repeat
score  div. del. ins.  sequence          begin  end (left)    repeat   class/family  begin  end (left)  ID

  189   0.0  0.0  0.0  C01H11_CONSENSUS      1   21  (489) +  (T)n     Simple_repeat     1   21    (0)      

Alignments:
189  0.00  0.00  0.00  C01H11_CONSENSUS  1  21  (489)  C  (A)n#Simple_repeat  (159)  21  1  5

  C01H11_CONSENSU      1 TTTTTTTTTTTTTTTTTTTTT 21     
                                              
C (A)n#Simple_rep     21 TTTTTTTTTTTTTTTTTTTTT 1      

Transitions / transversions = 1.00 (0 / 0)
Gap_init rate = 0.00 (0 / 21), avg. gap size = 0.00 (0 / 0)  

Masked Sequence:
>C01H11_CONSENSUS
NNNNNNNNNNNNNNNNNNNNNGAGCCGGAGCAAACACTTATTGTCAATGA
GATAAAAGTCATCACGAAAGAAAACTTAGAACGATGCATCCCCCATCATA
CACGACATGGGAACAAATGGACTACCGAAATATGGTGTTATTTAAAAGAC
AATAATTATAAGTACACAGAAGCAATGGCAGGACAGCTTTTCAGGTCAAA
GACAAGCTAATGATGCTTCGGGATATAAACATTTCAGGGGTAACCAAACC
ATACAATCAAAATCTTCAAACAACAACTTGTCCAAAGAGCTGCTTTCGGA
TCTCTGGAAGCTTTTTACGGAACACTACATCAAGTCGTGCATCAAGAGTA
TTTTCGCACACAATCTTTCCATCACGAGAAGCCAACACCACCCCNCCAGA
GCAGTAGAGATCATGAGAATTGTGATGACTGGGTCCAGGTGGAAGATAAA
CTTGGTTGTCAACAATGATCTCTGGGGGATCAACATTTGCTTCTCAGCAT
ACCCTGTGCA

Summary:
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences:            1
total length:       510 bp
GC level:         40.08 %
bases masked:        21 bp (  4.12 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:                0            0 bp     0.00 %
      ALUs            0            0 bp     0.00 %
      MIRs            0            0 bp     0.00 %

LINEs:                0            0 bp     0.00 %
      LINE1           0            0 bp     0.00 %
      LINE2           0            0 bp     0.00 %
      L3/CR1          0            0 bp     0.00 %

LTR elements:         0            0 bp     0.00 %
      MaLRs           0            0 bp     0.00 %
      ERVL            0            0 bp     0.00 %
      ERV_classI      0            0 bp     0.00 %
      ERV_classII     0            0 bp     0.00 %

DNA elements:         0            0 bp     0.00 %
      MER1_type       0            0 bp     0.00 %
      MER2_type       0            0 bp     0.00 %

Unclassified:         0            0 bp     0.00 %

Total interspersed repeats:        0 bp     0.00 %


Small RNA:            0            0 bp     0.00 %

Satellites:           0            0 bp     0.00 %
Simple repeats:       1           21 bp     4.12 %
Low complexity:       0            0 bp     0.00 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element

The sequence(s) were assumed to be of primate origin.
RepeatMasker version 07/16/2000               default
ProcessRepeats version 07/16/2000
Repbase version 03/31/2000


Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  C01H11_CONSENSUS
        (510 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           625,274 sequences; 197,782,623 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 7 Sequences     : less than 7 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 1405 380 |======================================================
   6310 1025 203 |=============================
   3980  822 174 |========================
   2510  648 175 |=========================
   1580  473 110 |===============
   1000  363 115 |================
    631  248  57 |========
    398  191  69 |=========
    251  122  38 |=====
    158   84  30 |====
    100   54   8 |=
   63.1   46   7 |=
   39.8   39   6 |:
   25.1   33   1 |:
   15.8   32   0 |
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 32  <<<<<<<<<<<<<<<<<
   10.0   32   1 |:
   6.31   31   1 |:
   3.98   30   0 |
   2.51   30   0 |
   1.58   30   0 |
   1.00   30   2 |:
   0.63   28   0 |
   0.40   28   0 |
   0.25   28   0 |
   0.16   28   1 |:
   0.10   27   0 |
  0.063   27   3 |:
  0.040   24   1 |:
  0.025   23   3 |:
  0.016   20   1 |:
  0.010   19   0 |
 0.0063   19   1 |:
 0.0040   18   2 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|12585492|sp|Q9SWE7|VATE_CITLIVACUOLAR ATP SYNTHASE... -3   309  1.4e-26   1
gi|12585474|sp|Q9MB46|VATE_CITUNVACUOLAR ATP SYNTHASE... -3   309  1.4e-26   1
gi|8096465|dbj|BAA94532.2|(AP001800) ESTs D40069(S180... -3   298  2.0e-25   1
gi|9652289|gb|AAF91469.1|(AF282970) putative vacuolar... -3   294  5.3e-25   1
gi|3334411|sp|Q41396|VATE_SPIOLVACUOLAR ATP SYNTHASE ... -3   271  1.4e-22   1
gi|3334405|sp|O23948|VATE_GOSHIVACUOLAR ATP SYNTHASE ... -3   271  1.4e-22   1
gi|2129765|pir||S71261V-type proton-ATPase - Arabidop... -3   270  1.8e-22   1
gi|12643432|sp|Q39258|VATE_ARATHVACUOLAR ATP SYNTHASE... -3   270  1.8e-22   1
gi|4099148|gb|AAD10335.1|(U84268) YLP [Hordeum vulgare]  -3   256  5.6e-21   1
gi|4099150|gb|AAD10336.1|(U84269) YLP [Hordeum vulgare]  -3   256  5.6e-21   1
gi|3334410|sp|Q40272|VATE_MESCRVACUOLAR ATP SYNTHASE ... -3   253  1.2e-20   1
gi|6692094|gb|AAF24559.1|AC007764_1(AC007764) F22C12.... -3   241  2.2e-19   1
gi|12322728|gb|AAG51352.1|AC012562_13(AC012562) putat... -3   240  2.8e-19   1
gi|12585387|sp|O00780|VATE_DICDIVACUOLAR ATP SYNTHASE... -3   152  5.9e-10   1
gi|12057152|emb|CAC19885.1|(AJ245933) V-type H(+)-ATP... -3   138  1.8e-08   1
gi|3183196|sp|O13687|VATE_SCHPOVACUOLAR ATP SYNTHASE ... -3   109  0.00070   1
gi|102981|pir||S25014H+-transporting ATPase (EC 3.6.1... -3   104  0.0036    1
gi|401332|sp|P31402|VATE_MANSEVACUOLAR ATP SYNTHASE S... -3   104  0.0038    1
gi|12585495|sp|Q9U1G5|VATE_HETSCVACUOLAR ATP SYNTHASE... -3   103  0.0052    1
gi|1718090|sp|P54611|VATE_DROMEVACUOLAR ATP SYNTHASE ... -3   100  0.013     1
gi|313014|emb|CAA50592.1|(X71491) vacuolar proton ATP... -3    98  0.025     1
gi|4502317ref|NP_001687.1| ATPase, H+ transporting, l... -3    98  0.025     1
gi|539608|pir||A42666H+-transporting ATPase (EC 3.6.1... -3    98  0.025     1
gi|11526296ref|XP_009823.1| ATPase, H+ transporting, ... -3    98  0.031     1
gi|137473|sp|P11019|VATE_BOVINVACUOLAR ATP SYNTHASE S... -3    96  0.043     1
gi|10720346|sp|O94072|VATE_CANALVACUOLAR ATP SYNTHASE... -3    96  0.043     1
gi|6680756ref|NP_031536.1| ATPase, H+ transporting ly... -3    95  0.061     1
gi|2493134|sp|Q01278|VATE_NEUCRVACUOLAR ATP SYNTHASE ... -3    92  0.14      1
gi|173169|gb|AAA35209.1|(M60663) vacuolar membrane AT... -3    87  0.50      1
gi|6324907ref|NP_014977.1| vacuolar ATPase V1 domain ... -3    87  0.50      1
gi|12583616|emb|CAC27331.1|(AJ301612) FUS/CHOP chimae... +2    61  0.998     1
gi|2493110|sp|Q48329|VATE_HALVOV-TYPE ATP SYNTHASE SU... -3    77  0.9996    1



Locally-aligned regions (HSPs) with respect to query sequence:

Locus_ID                Frame 2 Hits
gi|12583616            |               ______________                     
                        __________________________________________________
Query sequence:        |              |              |             |      | 170
                       0             50            100           150


Locus_ID                Frame -3 Hits
gi|12585492            |                                                  
gi|12585474            |                                                  
gi|8096465             |                                                  
gi|9652289             |                                                  
gi|3334411             |                                                  
gi|3334405             |                                                  
gi|2129765             |                                                  
gi|12643432            |                                                  
gi|4099148             |                                                  
gi|4099150             |                                                  
gi|3334410             |                                                  
gi|6692094             |                                                  
gi|12322728            |                                                  
gi|12585387            |                                                  
gi|12057152            |                                    _____________ 
gi|3183196             |                           ____________           
gi|102981              |                           _                      
gi|401332              |                           _                      
gi|12585495            |                                                  
gi|1718090             |                         ______________           
gi|313014              |                                                  
gi|4502317             |                                                  
gi|539608              |                                                  
gi|11526296            |                                                  
gi|137473              |                                                  
gi|10720346            |                         _______________          
gi|6680756             |                           _____________          
gi|2493134             |                           _____________          
gi|173169              |                           _____________          
gi|6324907             |                           _____________          
gi|2493110             |                           _____________          
Prosite Hits:                      ___                                    
                        __________________________________________________
Query sequence:        |              |              |             |      | 170
                       0             50            100           150
__________________
Prosite hits:
   TYR_PHOSPHO_SITE     Tyrosine kinase phosphorylation site.    39..47
__________________


Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.


 >gi|12585492|sp|Q9SWE7|VATE_CITLI  VACUOLAR ATP SYNTHASE SUBUNIT E (V-ATPASE E
            SUBUNIT) (VACUOLAR PROTON PUMP E SUBUNIT) (CLVE-1)
            >gi|5733660|gb|AAD49706.1| (AF165939) vacuolar V-H+ATPase subunit E
            [Citrus limon]
            Length = 230

Frame -3 hits (HSPs):                                     ________________
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 230
                       0         50        100        150        200

  Minus Strand HSPs:

 Score = 309 (108.8 bits), Expect = 1.4e-26, P = 1.4e-26
 Identities = 58/70 (82%), Positives = 62/70 (88%), Frame = -3

Query:   484 VDPPEIIVDNQVYLPPGPSHHNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLP 305
             V PPEIIVD+ +YLPPGP HHN+H   CSGGVV+ASRDGKIVCENTLDARLDVVFRKKLP
Sbjct:   159 VHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLP 218

Query:   304 EIRKQLFGQV 275
             EIRKQL  QV
Sbjct:   219 EIRKQLVSQV 228


 >gi|12585474|sp|Q9MB46|VATE_CITUN  VACUOLAR ATP SYNTHASE SUBUNIT E (V-ATPASE E
            SUBUNIT) (VACUOLAR PROTON PUMP E SUBUNIT)
            >gi|6729085|dbj|BAA89661.1| (AB037106) vacuolar H+-ATPase E
            subunit-1 [Citrus unshiu]
            Length = 230

Frame -3 hits (HSPs):                                     ________________
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 230
                       0         50        100        150        200

  Minus Strand HSPs:

 Score = 309 (108.8 bits), Expect = 1.4e-26, P = 1.4e-26
 Identities = 58/70 (82%), Positives = 62/70 (88%), Frame = -3

Query:   484 VDPPEIIVDNQVYLPPGPSHHNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLP 305
             V PPEIIVD+ +YLPPGP HHN+H   CSGGVV+ASRDGKIVCENTLDARLDVVFRKKLP
Sbjct:   159 VHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLP 218

Query:   304 EIRKQLFGQV 275
             EIRKQL  QV
Sbjct:   219 EIRKQLVSQV 228


 >gi|8096465|dbj|BAA94532.2|  (AP001800) ESTs
            D40069(S1808),D40089(S1834),AU083572(S1834) correspond to a region
            of the predicted gene.~Similar to Citrus limon vacuolar V-H+ATPase
            subunit E (AF165939) [Oryza sativa]
            Length = 230

Frame -3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 230
                       0         50        100        150        200

  Minus Strand HSPs:

 Score = 298 (104.9 bits), Expect = 2.0e-25, P = 2.0e-25
 Identities = 56/73 (76%), Positives = 63/73 (86%), Frame = -3

Query:   493 EANVDPPEIIVDNQVYLPPGPSHHNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRK 314
             +AN+ PPEI+VD  VYLPP PSH+ +H   CSGGVVLASRDGKIVCENTLDARL+VVFRK
Sbjct:   156 KANIYPPEIMVDRNVYLPPAPSHYEAHGPSCSGGVVLASRDGKIVCENTLDARLEVVFRK 215

Query:   313 KLPEIRKQLFGQV 275
             KLPEIR+ L GQV
Sbjct:   216 KLPEIRRSLLGQV 228


 >gi|9652289|gb|AAF91469.1|  (AF282970) putative vacuolar proton ATPase subunit E
            [Lycopersicon esculentum]
            Length = 237

Frame -3 hits (HSPs):                                     ________________
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 237
                       0         50       100        150       200

  Minus Strand HSPs:

 Score = 294 (103.5 bits), Expect = 5.3e-25, P = 5.3e-25
 Identities = 58/73 (79%), Positives = 64/73 (87%), Frame = -3

Query:   493 EANVDPPEIIVDNQVYLPPGPSHHNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRK 314
             +A+V  PEIIVD +++LPP PSHHN H   CSGGVVLASRDGKIVCENTLDARL+VVFRK
Sbjct:   164 KASVHQPEIIVD-EIHLPPAPSHHNMHGPSCSGGVVLASRDGKIVCENTLDARLEVVFRK 222

Query:   313 KLPEIRKQLFGQV 275
             KLPEIRK LFGQV
Sbjct:   223 KLPEIRKCLFGQV 235


 >gi|3334411|sp|Q41396|VATE_SPIOL  VACUOLAR ATP SYNTHASE SUBUNIT E (V-ATPASE E
            SUBUNIT) (VACUOLAR PROTON PUMP E SUBUNIT) >gi|7447323|pir||T09215
            H+-transporting ATPase (EC 3.6.1.35) chain E, vacuolar - spinach
            >gi|1263911|emb|CAA65581.1| (X96785) vacuolar H(+)-ATPase [Spinacia
            oleracea]
            Length = 229

Frame -3 hits (HSPs):                                    ________________ 
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 229
                       0         50        100        150        200
__________________

Annotated Domains:
   PFAM                 vATP-synt_E: ATP synthase (E/31 kDa) sub 16..224
   PRODOM               PD186788: VATE(4) O82502(1) Q9ZR97(1)    1..28
   PRODOM               PD005215: VATE(12)                       30..223
__________________


  Minus Strand HSPs:

 Score = 271 (95.4 bits), Expect = 1.4e-22, P = 1.4e-22
 Identities = 53/70 (75%), Positives = 60/70 (85%), Frame = -3

Query:   493 EANVDPPEIIVDNQVYLPPGPSHHNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRK 314
             +A V  PEIIVD+ ++LP GPSHH  H L+CSGGVVLASRDGKIV ENTLDARL+V FRK
Sbjct:   156 KAEVHTPEIIVDS-IHLPAGPSHHKEHGLHCSGGVVLASRDGKIVFENTLDARLEVAFRK 214

Query:   313 KLPEIRKQLF 284
             KLP+IRKQLF
Sbjct:   215 KLPQIRKQLF 224


 >gi|3334405|sp|O23948|VATE_GOSHI  VACUOLAR ATP SYNTHASE SUBUNIT E (V-ATPASE E
            SUBUNIT) (VACUOLAR PROTON PUMP E SUBUNIT) >gi|7447324|pir||T09848
            H+-transporting ATPase (EC 3.6.1.35) chain E, vacuolar - upland
            cotton >gi|2267583|gb|AAB72177.1| (AF009338) vacuolar H+-ATPase
            subunit E [Gossypium hirsutum]
            Length = 237

Frame -3 hits (HSPs):                                   __________________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 237
                       0         50       100        150       200
__________________

Annotated Domains:
   PFAM                 vATP-synt_E: ATP synthase (E/31 kDa) sub 16..232
   PRODOM               PD186788: VATE(4) O82502(1) Q9ZR97(1)    1..28
   PRODOM               PD005215: VATE(12)                       30..235
   PROSITE              LEUCINE_ZIPPER: Leucine zipper pattern.  125..146
__________________


  Minus Strand HSPs:

 Score = 271 (95.4 bits), Expect = 1.4e-22, P = 1.4e-22
 Identities = 57/80 (71%), Positives = 64/80 (80%), Frame = -3

Query:   493 EANVDPPEIIVDNQVYLPPGPSHHN--------SHDLYCSGGVVLASRDGKIVCENTLDA 338
             + NV PPEIIVD+ V+LPPGPSHH+        +H  +CSGGVV+ASRDGKIV ENTLDA
Sbjct:   156 KVNVHPPEIIVDD-VHLPPGPSHHHGFFHHHAEAHGPFCSGGVVIASRDGKIVFENTLDA 214

Query:   337 RLDVVFRKKLPEIRKQLFGQV 275
             RLDV F KKLPEIRK LFGQV
Sbjct:   215 RLDVAFNKKLPEIRKWLFGQV 235


 >gi|2129765|pir||S71261  V-type proton-ATPase - Arabidopsis thaliana
            >gi|1143394|emb|CAA63086.1| (X92117) V-type proton-ATPase
            [Arabidopsis thaliana]
            Length = 230

Frame -3 hits (HSPs):                                    _________________
Annotated Domains:                                ______                  
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 230
                       0         50        100        150        200
__________________

Annotated Domains:
   PROSITE              LEUCINE_ZIPPER: Leucine zipper pattern.  125..146
__________________


  Minus Strand HSPs:

 Score = 270 (95.0 bits), Expect = 1.8e-22, P = 1.8e-22
 Identities = 51/73 (69%), Positives = 59/73 (80%), Frame = -3

Query:   493 EANVDPPEIIVDNQVYLPPGPSHHNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRK 314
             +A V  PE+ VD +++LPP P  ++ H L+CSGGVVLASRDGKIVCENTLDARLDV FR 
Sbjct:   156 KAKVHAPEVAVDTKIFLPPPPKSNDPHGLHCSGGVVLASRDGKIVCENTLDARLDVAFRM 215

Query:   313 KLPEIRKQLFGQV 275
             KLP IRK LFGQV
Sbjct:   216 KLPVIRKSLFGQV 228


 >gi|12643432|sp|Q39258|VATE_ARATH  VACUOLAR ATP SYNTHASE SUBUNIT E (V-ATPASE E
            SUBUNIT) (VACUOLAR PROTON PUMP E SUBUNIT) >gi|7447322|pir||T01918
            H+-transporting ATPase (EC 3.6.1.35) chain E, vacuolar -
            Arabidopsis thaliana >gi|3600058|gb|AAC35545.1| (AF080120) similar
            to vacuolar ATPases [Arabidopsis thaliana]
            >gi|4850294|emb|CAB43050.1| (AL049876) H+-transporting ATPase chain
            E, vacuolar [Arabidopsis thaliana] >gi|7267814|emb|CAB81216.1|
            (AL161531) H+-transporting ATPase chain E, vacuolar [Arabidopsis
            thaliana]
            Length = 230

Frame -3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 230
                       0         50        100        150        200

  Minus Strand HSPs:

 Score = 270 (95.0 bits), Expect = 1.8e-22, P = 1.8e-22
 Identities = 51/73 (69%), Positives = 59/73 (80%), Frame = -3

Query:   493 EANVDPPEIIVDNQVYLPPGPSHHNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRK 314
             +A V  PE+ VD +++LPP P  ++ H L+CSGGVVLASRDGKIVCENTLDARLDV FR 
Sbjct:   156 KAKVHAPEVAVDTKIFLPPPPKSNDPHGLHCSGGVVLASRDGKIVCENTLDARLDVAFRM 215

Query:   313 KLPEIRKQLFGQV 275
             KLP IRK LFGQV
Sbjct:   216 KLPVIRKSLFGQV 228


 >gi|4099148|gb|AAD10335.1|  (U84268) YLP [Hordeum vulgare]
            Length = 227

Frame -3 hits (HSPs):                                     ________________
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 227
                       0         50        100        150        200

  Minus Strand HSPs:

 Score = 256 (90.1 bits), Expect = 5.6e-21, P = 5.6e-21
 Identities = 50/69 (72%), Positives = 57/69 (82%), Frame = -3

Query:   493 EANVDPPEIIVDNQVYLPPGPSHHNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRK 314
             +A+V  PEI+VD+ VYLPP PSH + H   C GGVVLASRDGKIV ENT+DARL+VVFRK
Sbjct:   156 KADVHEPEILVDHSVYLPPSPSHDDKHGQICHGGVVLASRDGKIVFENTVDARLEVVFRK 215

Query:   313 KLPEIRKQL 287
             KLPEIRK L
Sbjct:   216 KLPEIRKLL 224


 >gi|4099150|gb|AAD10336.1|  (U84269) YLP [Hordeum vulgare]
            Length = 227

Frame -3 hits (HSPs):                                     ________________
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 227
                       0         50        100        150        200

  Minus Strand HSPs:

 Score = 256 (90.1 bits), Expect = 5.6e-21, P = 5.6e-21
 Identities = 50/69 (72%), Positives = 57/69 (82%), Frame = -3

Query:   493 EANVDPPEIIVDNQVYLPPGPSHHNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRK 314
             +A+V  PEI+VD+ VYLPP PSH + H   C GGVVLASRDGKIV ENT+DARL+VVFRK
Sbjct:   156 KADVPEPEILVDHSVYLPPSPSHDDKHGQICHGGVVLASRDGKIVFENTVDARLEVVFRK 215

Query:   313 KLPEIRKQL 287
             KLPEIRK L
Sbjct:   216 KLPEIRKLL 224


 >gi|3334410|sp|Q40272|VATE_MESCR  VACUOLAR ATP SYNTHASE SUBUNIT E (V-ATPASE E
            SUBUNIT) (VACUOLAR PROTON PUMP E SUBUNIT) >gi|7447321|pir||T12581
            H+-transporting ATPase (EC 3.6.1.35) - common ice plant
            >gi|1143509|emb|CAA63087.1| (X92118) V-type proton-ATPase
            [Mesembryanthemum crystallinum]
            Length = 226

Frame -3 hits (HSPs):                                     ________________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |          |          |           |     | 226
                       0         50        100        150         200
__________________

Annotated Domains:
   PFAM                 vATP-synt_E: ATP synthase (E/31 kDa) sub 16..224
   PRODOM               PD186788: VATE(4) O82502(1) Q9ZR97(1)    1..28
   PRODOM               PD005215: VATE(12)                       30..223
__________________


  Minus Strand HSPs:

 Score = 253 (89.1 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 49/70 (70%), Positives = 61/70 (87%), Frame = -3

Query:   493 EANVDPPEIIVDNQVYLPPGPSHHNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRK 314
             +A V  PE+IVD+ ++LPP P+ ++SH+L CSGGVV+ASRDGKIV ENTLDARL+V FRK
Sbjct:   156 KACVSHPEVIVDD-IHLPPAPTSYDSHELSCSGGVVMASRDGKIVFENTLDARLEVAFRK 214

Query:   313 KLPEIRKQLF 284
             KLP+IRKQLF
Sbjct:   215 KLPQIRKQLF 224


 >gi|6692094|gb|AAF24559.1|AC007764_1  (AC007764) F22C12.4 [Arabidopsis thaliana]
            Length = 315

Frame -3 hits (HSPs):                            ___________              
                        __________________________________________________
Database sequence:     |       |       |       |       |       |       |  | 315
                       0      50     100     150     200     250     300

  Minus Strand HSPs:

 Score = 241 (84.8 bits), Expect = 2.2e-19, P = 2.2e-19
 Identities = 46/66 (69%), Positives = 52/66 (78%), Frame = -3

Query:   499 C*EANVDPPEIIVDNQVYLPPGPSHHNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVF 320
             C +A V  PEIIVD  ++LPP PS  + H L C+GGVVLASRDGKIVCENTLDARL+V F
Sbjct:   160 CKKAKVHAPEIIVDKDIFLPPAPSDDDPHALSCAGGVVLASRDGKIVCENTLDARLEVAF 219

Query:   319 RKKLPE 302
             R KLPE
Sbjct:   220 RNKLPE 225


 >gi|12322728|gb|AAG51352.1|AC012562_13  (AC012562) putative vacuolar ATP
            synthase subunit E; 11053-12830 [Arabidopsis thaliana]
            Length = 235

Frame -3 hits (HSPs):                                   _________________ 
                        __________________________________________________
Database sequence:     |          |          |         |          |       | 235
                       0         50        100       150        200

  Minus Strand HSPs:

 Score = 240 (84.5 bits), Expect = 2.8e-19, P = 2.8e-19
 Identities = 47/73 (64%), Positives = 59/73 (80%), Frame = -3

Query:   493 EANVDPPEIIVDNQVYLPPGPSHH--NSHDLYCSGGVVLASRDGKIVCENTLDARLDVVF 320
             +A V  P+I +D +V+LPP P+    +SHD +CSGGVVLAS+DGKIVCENTLDARLDV F
Sbjct:   156 KAKVGSPKITIDEKVFLPPPPNPKLPDSHDPHCSGGVVLASQDGKIVCENTLDARLDVAF 215

Query:   319 RKKLPEIRKQLFG 281
             R+KLP+IR +L G
Sbjct:   216 RQKLPQIRTRLVG 228


 >gi|12585387|sp|O00780|VATE_DICDI  VACUOLAR ATP SYNTHASE SUBUNIT E (V-ATPASE E
            SUBUNIT) (VACUOLAR PROTON PUMP E SUBUNIT)
            >gi|1912397|gb|AAB50982.1| (U49170) vacuolar H+-ATPase E subunit
            [Dictyostelium discoideum]
            Length = 233

Frame -3 hits (HSPs):                                     ______________  
                        __________________________________________________
Database sequence:     |          |          |         |          |       | 233
                       0         50        100       150        200

  Minus Strand HSPs:

 Score = 152 (53.5 bits), Expect = 5.9e-10, P = 5.9e-10
 Identities = 29/64 (45%), Positives = 46/64 (71%), Frame = -3

Query:   472 EIIVDNQVYLPPGP-SHHNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIR 296
             ++ VD + +LP GP S +N     C GGV+L++ +G+I+C+NTLD+RL++ F +  P IR
Sbjct:   162 DVSVDKERFLPQGPKSDYNGPT--CCGGVILSALEGRIICKNTLDSRLEICFDQLTPVIR 219

Query:   295 KQLFG 281
              QL+G
Sbjct:   220 TQLYG 224


 >gi|12057152|emb|CAC19885.1|  (AJ245933) V-type H(+)-ATPase subunit E [Beta
            vulgaris]
            Length = 186

Frame -3 hits (HSPs):                                          ___________
                        __________________________________________________
Database sequence:     |             |            |             |         | 186
                       0            50          100           150

  Minus Strand HSPs:

 Score = 138 (48.6 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 25/39 (64%), Positives = 34/39 (87%), Frame = -3

Query:   493 EANVDPPEIIVDNQVYLPPGPSHHNSHDLYCSGGVVLAS 377
             +A+V  PEI+VD+ ++LPPGPSHH++H L C+GGVVLAS
Sbjct:   149 KASVHSPEIVVDD-IHLPPGPSHHHTHGLSCAGGVVLAS 186


 >gi|3183196|sp|O13687|VATE_SCHPO  VACUOLAR ATP SYNTHASE SUBUNIT E (V-ATPASE E
            SUBUNIT) (VACUOLAR PROTON PUMP E SUBUNIT) (V-ATPASE 26 KDA SUBUNIT)
            >gi|7493598|pir||T37535 vacuolar atp synthase subunit - fission
            yeast  (Schizosaccharomyces pombe) >gi|2330665|emb|CAB11186.1|
            (Z98595) vacuolar atp synthase subunit [Schizosaccharomyces pombe]
            Length = 227

Frame -3 hits (HSPs):                                          __________ 
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 227
                       0         50        100        150        200
__________________

Annotated Domains:
   PFAM                 vATP-synt_E: ATP synthase (E/31 kDa) sub 18..217
   PRODOM               PD208617: VATE_SCHPO                     1..32
   PRODOM               PD005215: VATE(12)                       34..224
__________________


  Minus Strand HSPs:

 Score = 109 (38.4 bits), Expect = 0.00070, P = 0.00070
 Identities = 23/40 (57%), Positives = 29/40 (72%), Frame = -3

Query:   397 GGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKQLFGQ 278
             GGVVL    GKI  +NTL ARL++V  + LPEIR+ LFG+
Sbjct:   180 GGVVLVGLGGKIRVDNTLRARLEIVKEEALPEIRRLLFGE 219


 >gi|102981|pir||S25014  H+-transporting ATPase (EC 3.6.1.35) 28K chain - tobacco
            hornworm
            Length = 222

Frame -3 hits (HSPs):                                       ____________  
                        __________________________________________________
Database sequence:     |           |          |          |          |     | 222
                       0          50        100        150        200

  Minus Strand HSPs:

 Score = 104 (36.6 bits), Expect = 0.0036, P = 0.0036
 Identities = 24/62 (38%), Positives = 38/62 (61%), Frame = -3

Query:   463 VDNQVYLPPGPSHHNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKQLF 284
             +DN+ +LPP           C GG+ L +  G+I   NTL++RL+++ ++ LPEIR  LF
Sbjct:   163 IDNENFLPPDT---------C-GGIELIAAKGRIKISNTLESRLELIAQQLLPEIRNALF 212

Query:   283 GQ 278
             G+
Sbjct:   213 GR 214


 >gi|401332|sp|P31402|VATE_MANSE  VACUOLAR ATP SYNTHASE SUBUNIT E (V-ATPASE E
            SUBUNIT) (VACUOLAR PROTON PUMP E SUBUNIT) (V-ATPASE 28 KDA SUBUNIT)
            >gi|9733|emb|CAA47610.1| (X67131) H(+)-transporting  ATPase
            [Manduca sexta]
            Length = 226

Frame -3 hits (HSPs):                                       _____________ 
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |          |          |           |     | 226
                       0         50        100        150         200
__________________

Annotated Domains:
   PFAM                 vATP-synt_E: ATP synthase (E/31 kDa) sub 18..216
   PRODOM               PD187021: VATE(5)                        1..31
   PRODOM               PD005215: VATE(12)                       33..225
__________________


  Minus Strand HSPs:

 Score = 104 (36.6 bits), Expect = 0.0038, P = 0.0038
 Identities = 24/62 (38%), Positives = 38/62 (61%), Frame = -3

Query:   463 VDNQVYLPPGPSHHNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKQLF 284
             +DN+ +LPP           C GG+ L +  G+I   NTL++RL+++ ++ LPEIR  LF
Sbjct:   167 IDNENFLPPDT---------C-GGIELIAAKGRIKISNTLESRLELIAQQLLPEIRNALF 216

Query:   283 GQ 278
             G+
Sbjct:   217 GR 218


 >gi|12585495|sp|Q9U1G5|VATE_HETSC  VACUOLAR ATP SYNTHASE SUBUNIT E (V-ATPASE E
            SUBUNIT) (VACUOLAR PROTON PUMP E SUBUNIT)
            >gi|6562544|emb|CAB62552.1| (AJ249961) vacuolar ATPase subunit E
            [Heterodera schachtii]
            Length = 226

Frame -3 hits (HSPs):                                       ____________  
                        __________________________________________________
Database sequence:     |          |          |          |           |     | 226
                       0         50        100        150         200

  Minus Strand HSPs:

 Score = 103 (36.3 bits), Expect = 0.0052, P = 0.0052
 Identities = 25/64 (39%), Positives = 38/64 (59%), Frame = -3

Query:   472 EIIVDNQVYLPPGPSHHNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRK 293
             E+ +DN+ +L P  +          GGV L ++DGKI   +TL+ARLD++  K  P++R 
Sbjct:   164 EVKIDNEHFLSPESA----------GGVELLAKDGKIRVSSTLEARLDLIADKITPQVRT 213

Query:   292 QLFG 281
              LFG
Sbjct:   214 ALFG 217


 >gi|1718090|sp|P54611|VATE_DROME  VACUOLAR ATP SYNTHASE SUBUNIT E (V-ATPASE E
            SUBUNIT) (VACUOLAR PROTON PUMP E SUBUNIT) (V-ATPASE 28 KDA SUBUNIT)
            >gi|1033188|gb|AAB09738.1| (U38198) V-ATPase subunit E [Drosophila
            melanogaster] >gi|1055352|gb|AAB09739.1| (U38951) vacuolar ATPase
            subunit E [Drosophila melanogaster]
            >gi|5052526|gb|AAD38593.1|AF145618_1 (AF145618) BcDNA.GH03683
            [Drosophila melanogaster] >gi|7296718|gb|AAF51997.1| (AE003602)
            Vha26 gene product [alt 1] [Drosophila melanogaster]
            >gi|7296719|gb|AAF51998.1| (AE003602) Vha26 gene product [alt 2]
            [Drosophila melanogaster]
            Length = 226

Frame -3 hits (HSPs):                                          ___________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |          |          |           |     | 226
                       0         50        100        150         200
__________________

Annotated Domains:
   PFAM                 vATP-synt_E: ATP synthase (E/31 kDa) sub 18..216
   PRODOM               PD187021: VATE(5)                        1..31
   PRODOM               PD005215: VATE(12)                       33..225
__________________


  Minus Strand HSPs:

 Score = 100 (35.2 bits), Expect = 0.013, P = 0.013
 Identities = 21/46 (45%), Positives = 33/46 (71%), Frame = -3

Query:   397 GGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKQLFGQVVV*RF 260
             GGV L + +G+I   NTL++RLD++ ++ +PEIR  LFG+ V  +F
Sbjct:   179 GGVELLALNGRIKVPNTLESRLDLISQQLVPEIRNALFGRNVNRKF 224


 >gi|313014|emb|CAA50592.1|  (X71491) vacuolar proton ATPase [Homo sapiens]
            Length = 226

Frame -3 hits (HSPs):                                       ____________  
                        __________________________________________________
Database sequence:     |          |          |          |           |     | 226
                       0         50        100        150         200

  Minus Strand HSPs:

 Score = 98 (34.5 bits), Expect = 0.025, P = 0.025
 Identities = 23/64 (35%), Positives = 39/64 (60%), Frame = -3

Query:   472 EIIVDNQVYLPPGPSHHNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRK 293
             ++ +D + YLP         D+  +GGV + + D KI   NTL++RLD++ ++ +PE+R 
Sbjct:   164 DVQIDQESYLP--------EDI--AGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRG 213

Query:   292 QLFG 281
              LFG
Sbjct:   214 ALFG 217


 >gi|4502317  ref|NP_001687.1| ATPase, H+ transporting, lysosomal (vacuolar
            proton pump) 31kD; ATPase, H+ transporting, lysosomal (vacuolar
            proton pump) 31kD; Vacuolar proton-ATPase, subunit E; V-ATPase,
            subunit E; vacuolar proton-ATPase, subunit E; V-ATPase, subunit E
            [Homo sapiens] >gi|549207|sp|P36543|VATE_HUMAN VACUOLAR ATP
            SYNTHASE SUBUNIT E (V-ATPASE E SUBUNIT) (VACUOLAR PROTON PUMP E
            SUBUNIT) (V-ATPASE 31 KDA SUBUNIT) (P31) >gi|2135325|pir||S60562
            H+-transporting ATP synthase (EC 3.6.1.34) chain E, vacuolar -
            human >gi|452658|emb|CAA53814.1| (X76228) vacuolar H+ ATPase E
            subunit [Homo sapiens]
            Length = 226

Frame -3 hits (HSPs):                                       ____________  
                        __________________________________________________
Database sequence:     |          |          |          |           |     | 226
                       0         50        100        150         200

  Minus Strand HSPs:

 Score = 98 (34.5 bits), Expect = 0.025, P = 0.025
 Identities = 23/64 (35%), Positives = 39/64 (60%), Frame = -3

Query:   472 EIIVDNQVYLPPGPSHHNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRK 293
             ++ +D + YLP         D+  +GGV + + D KI   NTL++RLD++ ++ +PE+R 
Sbjct:   164 DVQIDQESYLP--------EDI--AGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRG 213

Query:   292 QLFG 281
              LFG
Sbjct:   214 ALFG 217


 >gi|539608|pir||A42666  H+-transporting ATPase (EC 3.6.1.35) 31K chain, vacuolar
            - human
            Length = 226

Frame -3 hits (HSPs):                                       ____________  
                        __________________________________________________
Database sequence:     |          |          |          |           |     | 226
                       0         50        100        150         200

  Minus Strand HSPs:

 Score = 98 (34.5 bits), Expect = 0.025, P = 0.025
 Identities = 23/64 (35%), Positives = 39/64 (60%), Frame = -3

Query:   472 EIIVDNQVYLPPGPSHHNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRK 293
             ++ +D + YLP         D+  +GGV + + D KI   NTL++RLD++ ++ +PE+R 
Sbjct:   164 DVQIDQESYLP--------EDI--AGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRG 213

Query:   292 QLFG 281
              LFG
Sbjct:   214 ALFG 217


 >gi|11526296  ref|XP_009823.1| ATPase, H+ transporting, lysosomal (vacuolar
            proton pump) 31kD [Homo sapiens]
            Length = 251

Frame -3 hits (HSPs):                                        ____________ 
                        __________________________________________________
Database sequence:     |         |         |         |         |         || 251
                       0        50       100       150       200       250

  Minus Strand HSPs:

 Score = 98 (34.5 bits), Expect = 0.032, P = 0.031
 Identities = 23/64 (35%), Positives = 39/64 (60%), Frame = -3

Query:   472 EIIVDNQVYLPPGPSHHNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRK 293
             ++ +D + YLP         D+  +GGV + + D KI   NTL++RLD++ ++ +PE+R 
Sbjct:   189 DVQIDQESYLP--------EDI--AGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRG 238

Query:   292 QLFG 281
              LFG
Sbjct:   239 ALFG 242


 >gi|137473|sp|P11019|VATE_BOVIN  VACUOLAR ATP SYNTHASE SUBUNIT E (V-ATPASE E
            SUBUNIT) (VACUOLAR PROTON PUMP E SUBUNIT) (V-ATPASE 31 KDA SUBUNIT)
            (P31) >gi|89601|pir||A31335 H+-transporting ATPase (EC 3.6.1.35)
            31K chain, vacuolar - bovine >gi|163132|gb|AAA30562.1| (J03244) H+
            ATPase 31kDa subunit (EC 3.6.1.3) [Bos taurus]
            Length = 226

Frame -3 hits (HSPs):                                       ____________  
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |          |          |           |     | 226
                       0         50        100        150         200
__________________

Annotated Domains:
   DOMO                 DM06872:                                 1..225
   PFAM                 vATP-synt_E: ATP synthase (E/31 kDa) sub 18..216
   PRODOM               PD187021: VATE(5)                        1..31
   PRODOM               PD005215: VATE(12)                       33..225
__________________


  Minus Strand HSPs:

 Score = 96 (33.8 bits), Expect = 0.044, P = 0.043
 Identities = 22/64 (34%), Positives = 39/64 (60%), Frame = -3

Query:   472 EIIVDNQVYLPPGPSHHNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRK 293
             ++ +D + YLP         ++  +GGV + + D KI   NTL++RLD++ ++ +PE+R 
Sbjct:   164 DVQIDQEAYLP--------EEI--AGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRG 213

Query:   292 QLFG 281
              LFG
Sbjct:   214 ALFG 217


 >gi|10720346|sp|O94072|VATE_CANAL  VACUOLAR ATP SYNTHASE SUBUNIT E (V-ATPASE E
            SUBUNIT) (VACUOLAR PROTON PUMP E SUBUNIT) >gi|7493781|pir||T18254
            H+-transporting ATPase (EC 3.6.1.35) E chain, vacuolar - yeast
            (Candida albicans) >gi|3859688|emb|CAA22028.1| (AL033503) vacuolar
            ATP synthase subunit E [Candida albicans]
            Length = 226

Frame -3 hits (HSPs):                                          ___________
                        __________________________________________________
Database sequence:     |          |          |          |           |     | 226
                       0         50        100        150         200

  Minus Strand HSPs:

 Score = 96 (33.8 bits), Expect = 0.044, P = 0.043
 Identities = 19/47 (40%), Positives = 30/47 (63%), Frame = -3

Query:   400 SGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKQLFGQVVV*RF 260
             +GG+V+ +  GKI  +NTL+ RL ++  + LP IR +LFG     +F
Sbjct:   178 AGGIVVVNGSGKIEVDNTLEERLKILSEEALPAIRLELFGPSTTRKF 224


 >gi|6680756  ref|NP_031536.1| ATPase, H+ transporting lysosomal (vacuolar proton
            pump), 32 kDa [Mus musculus] >gi|1718091|sp|P50518|VATE_MOUSE
            VACUOLAR ATP SYNTHASE SUBUNIT E (V-ATPASE E SUBUNIT) (VACUOLAR
            PROTON PUMP E SUBUNIT) (V-ATPASE 31 KDA SUBUNIT) (P31)
            >gi|1184663|gb|AAC52412.1| (U13841) vacuolar adenosine
            triphosphatase subunit E [Mus musculus]
            Length = 228

Frame -3 hits (HSPs):                                          _________  
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 228
                       0         50        100        150        200

  Minus Strand HSPs:

 Score = 95 (33.4 bits), Expect = 0.063, P = 0.061
 Identities = 18/40 (45%), Positives = 29/40 (72%), Frame = -3

Query:   400 SGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKQLFG 281
             +GGV + + D KI   NTL++RLD++ ++ +PE+R  LFG
Sbjct:   180 AGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFG 219


 >gi|2493134|sp|Q01278|VATE_NEUCR  VACUOLAR ATP SYNTHASE SUBUNIT E (V-ATPASE E
            SUBUNIT) (VACUOLAR PROTON PUMP E SUBUNIT) (V-ATPASE 26 KDA SUBUNIT)
            >gi|600167|gb|AAA87901.1| (U17641) vacuolar ATPase 26 kDa subunit
            [Neurospora crassa]
            Length = 230

Frame -3 hits (HSPs):                                          __________ 
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 230
                       0         50        100        150        200
__________________

Annotated Domains:
   PFAM                 vATP-synt_E: ATP synthase (E/31 kDa) sub 22..220
   PRODOM               PD208618: VATE_NEUCR                     1..34
   PRODOM               PD005215: VATE(12)                       36..229
__________________


  Minus Strand HSPs:

 Score = 92 (32.4 bits), Expect = 0.16, P = 0.14
 Identities = 17/41 (41%), Positives = 28/41 (68%), Frame = -3

Query:   400 SGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKQLFGQ 278
             +GG+++   +GKI  +NT +ARL ++    LP +RK LFG+
Sbjct:   182 AGGIIIVGGNGKIDIDNTFEARLTLLKDSALPAMRKALFGE 222


 >gi|173169|gb|AAA35209.1|  (M60663) vacuolar membrane ATPase [Saccharomyces
            cerevisiae]
            Length = 233

Frame -3 hits (HSPs):                                          _________  
                        __________________________________________________
Database sequence:     |          |          |         |          |       | 233
                       0         50        100       150        200

  Minus Strand HSPs:

 Score = 87 (30.6 bits), Expect = 0.69, P = 0.50
 Identities = 18/40 (45%), Positives = 27/40 (67%), Frame = -3

Query:   400 SGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKQLFG 281
             SGGVV+++   KI   NTL+ RL ++  + LP IR +L+G
Sbjct:   185 SGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLELYG 224


 >gi|6324907  ref|NP_014977.1| vacuolar ATPase V1 domain subunit E (27 kDa);
            Vma4p [Saccharomyces cerevisiae] >gi|1718092|sp|P22203|VATE_YEAST
            VACUOLAR ATP SYNTHASE SUBUNIT E (V-ATPASE E SUBUNIT) (VACUOLAR
            PROTON PUMP E SUBUNIT) (V-ATPASE 27 KDA SUBUNIT)
            >gi|2131271|pir||S62063 H+-transporting ATPase (EC 3.6.1.35) 26K
            chain, vacuolar [validated] - yeast (Saccharomyces cerevisiae)
            >gi|1163067|emb|CAA89978.1| (Z49821) VMA4 [Saccharomyces
            cerevisiae] >gi|1420724|emb|CAA99654.1| (Z75239) ORF YOR332w
            [Saccharomyces cerevisiae]
            Length = 233

Frame -3 hits (HSPs):                                          _________  
                        __________________________________________________
Database sequence:     |          |          |         |          |       | 233
                       0         50        100       150        200

  Minus Strand HSPs:

 Score = 87 (30.6 bits), Expect = 0.69, P = 0.50
 Identities = 18/40 (45%), Positives = 27/40 (67%), Frame = -3

Query:   400 SGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKQLFG 281
             SGGVV+++   KI   NTL+ RL ++  + LP IR +L+G
Sbjct:   185 SGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLELYG 224


 >gi|12583616|emb|CAC27331.1|  (AJ301612) FUS/CHOP chimaeric fusion protein [Homo
            sapiens]
            Length = 75

Frame  2 hits (HSPs):     ___________________________                     
                        __________________________________________________
Database sequence:     |            |             |            |          | 75
                       0           20            40           60

  Plus Strand HSPs:

 Score = 61 (21.5 bits), Expect = 6.0, P = 1.0
 Identities = 15/43 (34%), Positives = 22/43 (51%), Frame = +2

Query:   161 STQKQWQDSFSGQRQANDASGYKHFRGNQTIQSKSSNNNLSKE 289
             S+Q   Q S+SG  Q+ D SGY    G  +  S   + N+ K+
Sbjct:     5 SSQPYGQQSYSGYSQSTDTSGY----GQSSYSSYGQSQNMFKK 43


 >gi|2493110|sp|Q48329|VATE_HALVO  V-TYPE ATP SYNTHASE SUBUNIT E (V-TYPE ATPASE
            SUBUNIT E) >gi|11267058|pir||T47200 H+-transporting ATP synthase
            (EC 3.6.1.34) chain D [validated] - Haloferax volcanii
            >gi|693939|emb|CAA56048.1| (X79516) membrane ATPase [Haloferax
            volcanii] >gi|1098054|prf||2115218A ATPase [Haloferax volcanii]
            Length = 194

Frame -3 hits (HSPs):                                         ___________ 
Annotated Domains:       ________________________________________________ 
                        __________________________________________________
Database sequence:     |            |            |            |           | 194
                       0           50          100          150
__________________

Annotated Domains:
   PFAM                 vATP-synt_E: ATP synthase (E/31 kDa) sub 9..191
   PRODOM               PD001830: HSP1(29) VE2(21) GAG(12)       8..102
   PRODOM               PD030691: ATPE(2) O29104(1)              124..190
__________________


  Minus Strand HSPs:

 Score = 77 (27.1 bits), Expect = 7.9, P = 1.0
 Identities = 15/40 (37%), Positives = 23/40 (57%), Frame = -3

Query:   403 CSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKQLF 284
             C GGVV+   + ++   NT D+ LD V+   L E+  +LF
Sbjct:   152 CLGGVVVEGSNSRVRVNNTFDSVLDTVWEDNLKEVSARLF 191


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.99

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.347   0.148   0.505  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.329   0.138   0.430  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.336   0.146   0.498  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.347   0.154   0.545  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.363   0.158   0.652  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.356   0.163   0.563  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      169       162       10.  75 3  12 22  0.10    34
                                                    30  0.10    37
   +2      0      169       161       10.  75 3  12 22  0.10    34
                                                    30  0.10    37
   +1      0      170       162       10.  75 3  12 22  0.10    34
                                                    30  0.10    37
   -1      0      170       162       10.  75 3  12 22  0.10    34
                                                    30  0.10    37
   -2      0      169       162       10.  75 3  12 22  0.10    34
                                                    30  0.10    37
   -3      0      169       162       10.  75 3  12 22  0.10    34
                                                    30  0.10    37


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  4:06 PM CST Feb 28, 2001
    Format:  BLAST
  # of letters in database:  197,782,623
  # of sequences in database:  625,274
  # of database sequences satisfying E:  32
  No. of states in DFA:  596 (59 KB)
  Total size of DFA:  211 KB (256 KB)
  Time to generate neighborhood:  0.01u 0.00s 0.01t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  168.63u 1.12s 169.75t  Elapsed: 00:00:29
  Total cpu time:  168.67u 1.14s 169.81t  Elapsed: 00:00:29
  Start:  Wed Oct  3 11:54:39 2001   End:  Wed Oct  3 11:55:08 2001


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000