Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 7 |
| Arg | 4 |
| Asn | 1 |
| Asp | 1 |
| Cys | 1 |
| Gln | 2 |
| Glu | 2 |
| Gly | 3 |
| His | 1 |
| Ile | 4 |
| Leu | 5 |
| Lys | 2 |
| Met | 5 |
| Phe | 1 |
| Pro | 3 |
| Pseudo | 0 |
| Ser | 4 |
| Thr | 4 |
| Trp | 1 |
| Tyr | 1 |
| Undet | 0 |
| Val | 3 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | CGC | Contig98 | 30 | 4059305..4059380 | 0..0 | 89.13 | 70.00 |
| Ala | GGC | Contig98 | 6 | 363106 ..363181 | 0..0 | 84.92 | 73.78 |
| Ala | GGC | Contig98 | 7 | 363384 ..363459 | 0..0 | 84.92 | 73.78 |
| Ala | TGC | Contig98 | 12 | 913200 ..913275 | 0..0 | 86.09 | 76.19 |
| Ala | TGC | Contig98 | 36 | 3810370..3810295 | 0..0 | 86.09 | 76.19 |
| Ala | TGC | Contig98 | 3 | 194332 ..194407 | 0..0 | 86.09 | 76.19 |
| Ala | TGC | Contig98 | 46 | 2735322..2735247 | 0..0 | 86.09 | 76.19 |
| Arg | ACG | Contig98 | 34 | 3826007..3825931 | 0..0 | 81.67 | 59.96 |
| Arg | CCG | Contig98 | 1 | 151241 ..151317 | 0..0 | 91.20 | 69.94 |
| Arg | CCT | Contig98 | 54 | 117401 ..117325 | 0..0 | 80.36 | 52.51 |
| Arg | TCT | Contig98 | 19 | 1934676..1934752 | 0..0 | 96.28 | 74.07 |
| Asn | GTT | Contig98 | 23 | 2094428..2094502 | 0..0 | 91.89 | 67.47 |
| Asp | GTC | Contig98 | 28 | 3379605..3379681 | 0..0 | 96.47 | 80.33 |
| Cys | GCA | Contig98 | 22 | 2094273..2094346 | 0..0 | 69.60 | 43.76 |
| Gln | CTG | Contig98 | 5 | 306906 ..306979 | 0..0 | 65.81 | 33.40 |
| Gln | TTG | Contig98 | 53 | 324174 ..324100 | 0..0 | 75.41 | 50.10 |
| Glu | CTC | Contig98 | 14 | 1160163..1160238 | 0..0 | 62.55 | 34.05 |
| Glu | TTC | Contig98 | 51 | 1792351..1792276 | 0..0 | 66.70 | 38.67 |
| Gly | CCC | Contig98 | 37 | 3719990..3719917 | 0..0 | 82.60 | 61.55 |
| Gly | GCC | Contig98 | 31 | 4262308..4262382 | 0..0 | 87.40 | 63.06 |
| Gly | TCC | Contig98 | 42 | 3126961..3126888 | 0..0 | 83.85 | 65.52 |
| His | GTG | Contig98 | 48 | 2412083..2412007 | 0..0 | 83.97 | 66.88 |
| Ile | GAT | Contig98 | 11 | 913057 ..913133 | 0..0 | 97.73 | 74.62 |
| Ile | GAT | Contig98 | 2 | 194189 ..194265 | 0..0 | 97.73 | 74.62 |
| Ile | GAT | Contig98 | 35 | 3810513..3810437 | 0..0 | 97.73 | 74.62 |
| Ile | GAT | Contig98 | 45 | 2735465..2735389 | 0..0 | 97.73 | 74.62 |
| Leu | CAA | Contig98 | 33 | 4023277..4023191 | 0..0 | 74.41 | 43.66 |
| Leu | CAG | Contig98 | 55 | 17102 ..17016 | 0..0 | 71.75 | 40.26 |
| Leu | GAG | Contig98 | 49 | 2306010..2305924 | 0..0 | 73.75 | 39.38 |
| Leu | TAA | Contig98 | 52 | 468126 ..468041 | 0..0 | 76.17 | 49.03 |
| Leu | TAG | Contig98 | 16 | 1825837..1825921 | 0..0 | 74.38 | 50.60 |
| Lys | CTT | Contig98 | 9 | 559697 ..559772 | 0..0 | 98.56 | 79.22 |
| Lys | TTT | Contig98 | 50 | 2033062..2032987 | 0..0 | 90.27 | 58.95 |
| Met | CAT | Contig98 | 13 | 916723 ..916799 | 0..0 | 81.76 | 54.87 |
| Met | CAT | Contig98 | 24 | 2331595..2331671 | 0..0 | 92.62 | 74.60 |
| Met | CAT | Contig98 | 39 | 3322281..3322206 | 0..0 | 85.40 | 67.05 |
| Met | CAT | Contig98 | 47 | 2731797..2731721 | 0..0 | 81.76 | 54.87 |
| Met | CAT | Contig98 | 4 | 197858 ..197934 | 0..0 | 81.76 | 54.87 |
| Phe | GAA | Contig98 | 40 | 3195013..3194938 | 0..0 | 90.73 | 71.38 |
| Pro | CGG | Contig98 | 38 | 3399833..3399757 | 0..0 | 78.39 | 54.48 |
| Pro | GGG | Contig98 | 20 | 1960034..1960110 | 0..0 | 83.53 | 59.36 |
| Pro | TGG | Contig98 | 18 | 1934224..1934300 | 0..0 | 86.90 | 66.16 |
| Ser | CGA | Contig98 | 15 | 1465406..1465495 | 0..0 | 57.15 | 28.86 |
| Ser | GCT | Contig98 | 8 | 407699 ..407790 | 0..0 | 63.24 | 32.70 |
| Ser | GGA | Contig98 | 10 | 795406 ..795496 | 0..0 | 66.20 | 44.10 |
| Ser | TGA | Contig98 | 21 | 1998244..1998333 | 0..0 | 79.78 | 48.38 |
| Thr | CGT | Contig98 | 32 | 4108113..4108039 | 0..0 | 87.64 | 70.46 |
| Thr | GGT | Contig98 | 26 | 3378255..3378329 | 0..0 | 85.82 | 56.15 |
| Thr | GGT | Contig98 | 27 | 3378495..3378569 | 0..0 | 85.82 | 56.15 |
| Thr | TGT | Contig98 | 25 | 3128216..3128291 | 0..0 | 101.81 | 84.84 |
| Trp | CCA | Contig98 | 43 | 3125260..3125185 | 0..0 | 89.55 | 70.22 |
| Tyr | GTA | Contig98 | 41 | 3127074..3126989 | 0..0 | 79.13 | 54.49 |
| Val | CAC | Contig98 | 29 | 3491233..3491307 | 0..0 | 88.96 | 67.95 |
| Val | GAC | Contig98 | 44 | 2962303..2962229 | 0..0 | 84.92 | 59.86 |
| Val | TAC | Contig98 | 17 | 1833693..1833768 | 0..0 | 93.28 | 72.95 |
tRNA Models
Contig98.trna1 (151241-151317) Length: 77 bp
Type: Arg Anticodon: CCG at 35-37 (151275-151277) Score: 91.20
HMM Sc=69.94 Sec struct Sc=21.26
* | * | * | * | * | * | * | *
Seq: GCGTCCGTAGCTCAGCTGGAtAGAGCGTTGGCCTCCGGAGCCAAAGGtCAGGGGTTCGAATCCCTTCGGACGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna2 (194189-194265) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (194223-194225) Score: 97.73
HMM Sc=74.62 Sec struct Sc=23.11
* | * | * | * | * | * | * | *
Seq: GGGCCTGTAGCTCAGGTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGGCAGTTCGAGTCTGCCCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna3 (194332-194407) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (194365-194367) Score: 86.09
HMM Sc=76.19 Sec struct Sc=9.90
* | * | * | * | * | * | * | *
Seq: GGGGCCGTAGCTCAGTTGGGAGAGCGCTAGCTTTGCAAGCTTGAGGtCGTCGGTTCGATCCCGTCCGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>.>>>.......<<<.<.....>.>>>.......<<<.<<<<<<<<....
Contig98.trna4 (197858-197934) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (197892-197894) Score: 81.76
HMM Sc=54.87 Sec struct Sc=26.89
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGCCcGGTAGCTCGTCAGGCTCATAACCTGAAGGcCGCAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig98.trna5 (306906-306979) Length: 74 bp
Type: Gln Anticodon: CTG at 33-35 (306938-306940) Score: 65.81
HMM Sc=33.40 Sec struct Sc=32.41
* | * | * | * | * | * | * |
Seq: TGGGGGATAGGTTAACGGTAGACCCACGGACTCTGACTCCGTTAGTCCTGGTTCGAATCCAGGTCCCCCAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig98.trna6 (363106-363181) Length: 76 bp
Type: Ala Anticodon: GGC at 34-36 (363139-363141) Score: 84.92
HMM Sc=73.78 Sec struct Sc=11.14
* | * | * | * | * | * | * | *
Seq: GGGGCTGTAGCTCAGTTGGGAGAGCGCTTGAATGGCATTCAAGAGGtCAGGGGTTCGATTCCCCTCTGCTCCACCA
Str: >>>>>.>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<<....
Contig98.trna7 (363384-363459) Length: 76 bp
Type: Ala Anticodon: GGC at 34-36 (363417-363419) Score: 84.92
HMM Sc=73.78 Sec struct Sc=11.14
* | * | * | * | * | * | * | *
Seq: GGGGCTGTAGCTCAGTTGGGAGAGCGCTTGAATGGCATTCAAGAGGtCAGGGGTTCGATTCCCCTCTGCTCCACCA
Str: >>>>>.>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<<....
Contig98.trna8 (407699-407790) Length: 92 bp
Type: Ser Anticodon: GCT at 35-37 (407733-407735) Score: 63.24
HMM Sc=32.70 Sec struct Sc=30.54
* | * | * | * | * | * | * | * | * |
Seq: GGAGTGGTGGGTGAGTGGCtgAAACCAGCGGTTTGCTAAACCGCCATACTGGGAAACCGGTATCGAGGGTTCGAATCCCTCCTACTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>>....<<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig98.trna9 (559697-559772) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (559730-559732) Score: 98.56
HMM Sc=79.22 Sec struct Sc=19.34
* | * | * | * | * | * | * | *
Seq: GGGCGTATAGCTCAGTTGGTAGAGCAGCTGACTCTTAATCAGCGGGtCGTAGGTTCGAATCCTACTGCGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna10 (795406-795496) Length: 91 bp
Type: Ser Anticodon: GGA at 35-37 (795440-795442) Score: 66.20
HMM Sc=44.10 Sec struct Sc=22.10
* | * | * | * | * | * | * | * | * |
Seq: GGAGGGGTGGCCGAGTGGTcgATGGCGCACGCCTGGAAAGTGTGTATACGTCAAAaGCGTATCGTGGGTTCGAATCCCACCCCCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.>>>>>>.....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig98.trna11 (913057-913133) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (913091-913093) Score: 97.73
HMM Sc=74.62 Sec struct Sc=23.11
* | * | * | * | * | * | * | *
Seq: GGGCCTGTAGCTCAGGTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGGCAGTTCGAGTCTGCCCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna12 (913200-913275) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (913233-913235) Score: 86.09
HMM Sc=76.19 Sec struct Sc=9.90
* | * | * | * | * | * | * | *
Seq: GGGGCCGTAGCTCAGTTGGGAGAGCGCTAGCTTTGCAAGCTTGAGGtCGTCGGTTCGATCCCGTCCGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>.>>>.......<<<.<.....>.>>>.......<<<.<<<<<<<<....
Contig98.trna13 (916723-916799) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (916757-916759) Score: 81.76
HMM Sc=54.87 Sec struct Sc=26.89
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGCCcGGTAGCTCGTCAGGCTCATAACCTGAAGGcCGCAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig98.trna14 (1160163-1160238) Length: 76 bp
Type: Glu Anticodon: CTC at 35-37 (1160197-1160199) Score: 62.55
HMM Sc=34.05 Sec struct Sc=28.50
* | * | * | * | * | * | * | *
Seq: GTCCCCATCGTCTAGCGGTccAGGACGTCAGCCTCTCACGCTGAAAACAGGGGTTCGATTCCCCTTGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig98.trna15 (1465406-1465495) Length: 90 bp
Type: Ser Anticodon: CGA at 35-37 (1465440-1465442) Score: 57.15
HMM Sc=28.86 Sec struct Sc=28.29
* | * | * | * | * | * | * | * | *
Seq: GGAGGGGTGCCAGAGTGGTcgATCGGGGCGGTCTCGAAAACCGTTGTTCCTTCGCGGGAACCGTGGGTTCGAATCCCACCCCCTCCGCCA
Str: >>>>>>>..>>.>.........<.<<.>>>>>.......<<<<<..>>>>>.><.<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig98.trna16 (1825837-1825921) Length: 85 bp
Type: Leu Anticodon: TAG at 35-37 (1825871-1825873) Score: 74.38
HMM Sc=50.60 Sec struct Sc=23.78
* | * | * | * | * | * | * | * |
Seq: GCGGGCGTGGTGGAACTGGTaGACACGCTGGATTTAGGTTCCAGTGGCTTCGGCCGTGGGGGTTCAAATCCCTTCGCCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>..<<<<..>>>>>.......<<<<<<<<<<<<....
Contig98.trna17 (1833693-1833768) Length: 76 bp
Type: Val Anticodon: TAC at 34-36 (1833726-1833728) Score: 93.28
HMM Sc=72.95 Sec struct Sc=20.33
* | * | * | * | * | * | * | *
Seq: GGGCGGTTAGCTCAGCTGGGAGAGCATCTGGTTTACACCCAGAGGGtCGGCGGTTCGAACCCGTCACCGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna18 (1934224-1934300) Length: 77 bp
Type: Pro Anticodon: TGG at 35-37 (1934258-1934260) Score: 86.90
HMM Sc=66.16 Sec struct Sc=20.74
* | * | * | * | * | * | * | *
Seq: CGGGGCGTAGCTCAGCCtGGTAGAGCGTCGGCTTTGGGAGCCGAAAGcCGGAGGTTCGAATCCTCTCGCCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna19 (1934676-1934752) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (1934710-1934712) Score: 96.28
HMM Sc=74.07 Sec struct Sc=22.21
* | * | * | * | * | * | * | *
Seq: GCGCCCTTAGCTCAGTTGGAtAGAGCACTCGCCTTCTAAGCGAGATGtCGCTGGTTCGAATCCAGCAGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna20 (1960034-1960110) Length: 77 bp
Type: Pro Anticodon: GGG at 35-37 (1960068-1960070) Score: 83.53
HMM Sc=59.36 Sec struct Sc=24.17
* | * | * | * | * | * | * | *
Seq: CGGAGCGTGGCGCAGCCtGGTAGCGCACTTGACTGGGGGTCAAGGGGtCGCAGGTTCGAATCCTGTCGCTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna21 (1998244-1998333) Length: 90 bp
Type: Ser Anticodon: TGA at 35-37 (1998278-1998280) Score: 79.78
HMM Sc=48.38 Sec struct Sc=31.40
* | * | * | * | * | * | * | * | *
Seq: GGAGGGGTGGCCGAGTGGTttAAGGCAGCGGTCTTGAAAACCGCCGTGGGAGCAATCTCACCGTGGGTTCGAATCCCACCCCCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig98.trna22 (2094273-2094346) Length: 74 bp
Type: Cys Anticodon: GCA at 33-35 (2094305-2094307) Score: 69.60
HMM Sc=43.76 Sec struct Sc=25.84
* | * | * | * | * | * | * |
Seq: GGCCGGATGGCAGAGTGGTTATGCAGCGGACTGCAAATCCGCGTACGTCGGTTCGATTCCGGCTCCGGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig98.trna23 (2094428-2094502) Length: 75 bp
Type: Asn Anticodon: GTT at 33-35 (2094460-2094462) Score: 91.89
HMM Sc=67.47 Sec struct Sc=24.42
* | * | * | * | * | * | * |
Seq: TCCGGAGTAGCTCAGCGGTAGAGCAATCGGCTGTTAACCGATTGGtCGGGGGTTCGAATCCCTCCTCCGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna24 (2331595-2331671) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (2331629-2331631) Score: 92.62
HMM Sc=74.60 Sec struct Sc=18.02
* | * | * | * | * | * | * | *
Seq: GGCGGAGTAGCTCAGTTGGTtAGAGCAGCGGAATCATAATCCGCGTGtCGGGGGTTCGAGTCCCTCCTCCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna25 (3128216-3128291) Length: 76 bp
Type: Thr Anticodon: TGT at 34-36 (3128249-3128251) Score: 101.81
HMM Sc=84.84 Sec struct Sc=16.97
* | * | * | * | * | * | * | *
Seq: GCCGGATTAGCTCAGTTGGTAGAGCACCTGATTTGTAATCAGGGGGtCACGGGTTCGAATCCTGTATCCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna26 (3378255-3378329) Length: 75 bp
Type: Thr Anticodon: GGT at 33-35 (3378287-3378289) Score: 85.82
HMM Sc=56.15 Sec struct Sc=29.67
* | * | * | * | * | * | * |
Seq: GCCGCCGTAGCTCAGGGGTAGAGCACACCCTTGGTAAGGGTGGGGtCGGGTGTTCGATTCACCCCGGCGGCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna27 (3378495-3378569) Length: 75 bp
Type: Thr Anticodon: GGT at 33-35 (3378527-3378529) Score: 85.82
HMM Sc=56.15 Sec struct Sc=29.67
* | * | * | * | * | * | * |
Seq: GCCGCCGTAGCTCAGGGGTAGAGCACACCCTTGGTAAGGGTGGGGtCGGGTGTTCGATTCACCCCGGCGGCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna28 (3379605-3379681) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (3379639-3379641) Score: 96.47
HMM Sc=80.33 Sec struct Sc=16.14
* | * | * | * | * | * | * | *
Seq: GCGGGTGTAGCTCAGTTGGTtAGAGCGCTGGCCTGTCACGCCAGAGGtCGCCGGTTCAAGTCCGGTCACTCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna29 (3491233-3491307) Length: 75 bp
Type: Val Anticodon: CAC at 33-35 (3491265-3491267) Score: 88.96
HMM Sc=67.95 Sec struct Sc=21.01
* | * | * | * | * | * | * |
Seq: GGGCGCGTAGCTCAGCGGGAGAGCACTGCCTTCACACGGCAGGGGtCACAGGTTCAATCCCTGTCGCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna30 (4059305-4059380) Length: 76 bp
Type: Ala Anticodon: CGC at 34-36 (4059338-4059340) Score: 89.13
HMM Sc=70.00 Sec struct Sc=19.13
* | * | * | * | * | * | * | *
Seq: GGGGCCGTAGCTCAGTTGGGAGAGCGCAGCAATCGCACTGCTGAGGtCAGGGGTTCGATTCCCCTCGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna31 (4262308-4262382) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (4262340-4262342) Score: 87.40
HMM Sc=63.06 Sec struct Sc=24.34
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGCTCAGGGGTAGAGCACAACCTTGCCAAGGTTGGGGtCGTGAGTTCGAATCTCATCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna32 (4108113-4108039) Length: 75 bp
Type: Thr Anticodon: CGT at 33-35 (4108081-4108079) Score: 87.64
HMM Sc=70.46 Sec struct Sc=17.18
* | * | * | * | * | * | * |
Seq: GCCGTGGTAGCTCAGGGGTAGAGCAACTGATTCGTAATCAGTAGGtCGGGGGTTCAAATCCCTTTCACGGCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna33 (4023277-4023191) Length: 87 bp
Type: Leu Anticodon: CAA at 35-37 (4023243-4023241) Score: 74.41
HMM Sc=43.66 Sec struct Sc=30.75
* | * | * | * | * | * | * | * | *
Seq: GCCCCTGTGGCGGAACTGGTaGACGCGGCAGACTCAAAATCTGTTTCCCGTAAGGGAGTGGGAGTTCGACTCTCCCCGGGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig98.trna34 (3826007-3825931) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (3825973-3825971) Score: 81.67
HMM Sc=59.96 Sec struct Sc=21.71
* | * | * | * | * | * | * | *
Seq: GCGCCCGTAGCTCAACTGGAtAGAGCATCTGACTACGGATCAGAAGGcTAGGAGTTCGAATCTCTTCGGGCGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna35 (3810513-3810437) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (3810479-3810477) Score: 97.73
HMM Sc=74.62 Sec struct Sc=23.11
* | * | * | * | * | * | * | *
Seq: GGGCCTGTAGCTCAGGTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGGCAGTTCGAGTCTGCCCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna36 (3810370-3810295) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (3810337-3810335) Score: 86.09
HMM Sc=76.19 Sec struct Sc=9.90
* | * | * | * | * | * | * | *
Seq: GGGGCCGTAGCTCAGTTGGGAGAGCGCTAGCTTTGCAAGCTTGAGGtCGTCGGTTCGATCCCGTCCGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>.>>>.......<<<.<.....>.>>>.......<<<.<<<<<<<<....
Contig98.trna37 (3719990-3719917) Length: 74 bp
Type: Gly Anticodon: CCC at 33-35 (3719958-3719956) Score: 82.60
HMM Sc=61.55 Sec struct Sc=21.05
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGTTCAATGGTAGAACATCAGCTTCCCAAGCTGAATACGAGGGTTCGATTCCCTTCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig98.trna38 (3399833-3399757) Length: 77 bp
Type: Pro Anticodon: CGG at 35-37 (3399799-3399797) Score: 78.39
HMM Sc=54.48 Sec struct Sc=23.91
* | * | * | * | * | * | * | *
Seq: CGGAGTGTAGCTCAGCCtGGTAGAGCACTGTCTTCGGGAGGCAGGGGcCGGAGGTTCGAATCCTCTCACTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna39 (3322281-3322206) Length: 76 bp
Type: Met Anticodon: CAT at 34-36 (3322248-3322246) Score: 85.40
HMM Sc=67.05 Sec struct Sc=18.35
* | * | * | * | * | * | * | *
Seq: GGGCCTGTAGCTCAATGGTtAGAGCCGGCGGCTCATAACCGTCTGGtTGCAGGTTCGAGTCCTGCCGGGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna40 (3195013-3194938) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (3194980-3194978) Score: 90.73
HMM Sc=71.38 Sec struct Sc=19.35
* | * | * | * | * | * | * | *
Seq: GCCCGGGTAGCTCAGCTGGTAGAGCACGTGACTGAAAATCACGGTGtCGGTGGTTCGACTCCGCCCCCGGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna41 (3127074-3126989) Length: 86 bp
Type: Tyr Anticodon: GTA at 35-37 (3127040-3127038) Score: 79.13
HMM Sc=54.49 Sec struct Sc=24.64
* | * | * | * | * | * | * | * | *
Seq: GGAGGGGTGGTCGAGTGGTtaAAGGCACCGGACTGTAAATCCGGCGGGGTAACCCTACGCTGGTTCGAATCCAGCCCCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig98.trna42 (3126961-3126888) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (3126929-3126927) Score: 83.85
HMM Sc=65.52 Sec struct Sc=18.33
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGCTCAATGGTAGAGCCCCAGCCTTCCAAGCTGGTTGTGTGGGTTCGATTCCCATCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig98.trna43 (3125260-3125185) Length: 76 bp
Type: Trp Anticodon: CCA at 34-36 (3125227-3125225) Score: 89.55
HMM Sc=70.22 Sec struct Sc=19.33
* | * | * | * | * | * | * | *
Seq: AGGGGTGTAGCTCAACTGGTAGAGCACCGGTCTCCAAAACCGGGGGtTACGGGTTCAAGTCCTGTCACCCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna44 (2962303-2962229) Length: 75 bp
Type: Val Anticodon: GAC at 33-35 (2962271-2962269) Score: 84.92
HMM Sc=59.86 Sec struct Sc=25.06
* | * | * | * | * | * | * |
Seq: GGGCGGTTAGCTCAGCGGGAGAGCACTACGTTGACATCGTAGGGGtCACTGGTTCAATCCCAGTACCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna45 (2735465-2735389) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (2735431-2735429) Score: 97.73
HMM Sc=74.62 Sec struct Sc=23.11
* | * | * | * | * | * | * | *
Seq: GGGCCTGTAGCTCAGGTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGGCAGTTCGAGTCTGCCCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna46 (2735322-2735247) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (2735289-2735287) Score: 86.09
HMM Sc=76.19 Sec struct Sc=9.90
* | * | * | * | * | * | * | *
Seq: GGGGCCGTAGCTCAGTTGGGAGAGCGCTAGCTTTGCAAGCTTGAGGtCGTCGGTTCGATCCCGTCCGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>.>>>.......<<<.<.....>.>>>.......<<<.<<<<<<<<....
Contig98.trna47 (2731797-2731721) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (2731763-2731761) Score: 81.76
HMM Sc=54.87 Sec struct Sc=26.89
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGCCcGGTAGCTCGTCAGGCTCATAACCTGAAGGcCGCAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig98.trna48 (2412083-2412007) Length: 77 bp
Type: His Anticodon: GTG at 35-37 (2412049-2412047) Score: 83.97
HMM Sc=66.88 Sec struct Sc=17.09
* | * | * | * | * | * | * | *
Seq: GCGGGCGTAGCTCAGTTGGTtAGAGCGCGTGGTTGTGGTCCATGAGGtCGTCGGTTCGATTCCGATCGCTCGCCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna49 (2306010-2305924) Length: 87 bp
Type: Leu Anticodon: GAG at 35-37 (2305976-2305974) Score: 73.75
HMM Sc=39.38 Sec struct Sc=34.37
* | * | * | * | * | * | * | * | *
Seq: GCGGTCGTGGCGGAACTGGTaGACGCGCAGCGTTGAGGTCGCTGTGGCCGAAAGGCCGTGGAAGTTCGAGTCTTCTCGACCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig98.trna50 (2033062-2032987) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (2033029-2033027) Score: 90.27
HMM Sc=58.95 Sec struct Sc=31.32
* | * | * | * | * | * | * | *
Seq: GAGCCCGTAGCTCAGCTGGTAGAGCAGTTGACTTTTAATCAACGGGtCACGCGTTCGAATCGCGTCGGGCTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna51 (1792351-1792276) Length: 76 bp
Type: Glu Anticodon: TTC at 35-37 (1792317-1792315) Score: 66.70
HMM Sc=38.67 Sec struct Sc=28.03
* | * | * | * | * | * | * | *
Seq: GTCCCCATCGTCTAGCGGTccAGGACATCAGCCTTTCACGCTGAAGACACGGGTTCGATTCCCGTTGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig98.trna52 (468126-468041) Length: 86 bp
Type: Leu Anticodon: TAA at 35-37 (468092-468090) Score: 76.17
HMM Sc=49.03 Sec struct Sc=27.14
* | * | * | * | * | * | * | * | *
Seq: GCGGACGTGGCGGAACCGGTaGACGCAGCAGACTTAAAATCTGCTTCTCTTCGAGAGTGCGGGTTCGAGTCCCGCCGTCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<....
Contig98.trna53 (324174-324100) Length: 75 bp
Type: Gln Anticodon: TTG at 33-35 (324142-324140) Score: 75.41
HMM Sc=50.10 Sec struct Sc=25.31
* | * | * | * | * | * | * |
Seq: TGGGGCGTGGCCAAGCGGTAAGGCAGCGGCTTTTGGTGCCGCCATtCGCAGGTTCGATCCCTGCCGCCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna54 (117401-117325) Length: 77 bp
Type: Arg Anticodon: CCT at 35-37 (117367-117365) Score: 80.36
HMM Sc=52.51 Sec struct Sc=27.85
* | * | * | * | * | * | * | *
Seq: CTCCCCGTAGCTCAGCAGGAtAGAGCGTTGGATTCCTAATCCAAAGGcCACAGGTTCGAATCCTGTCGGGGAGGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig98.trna55 (17102-17016) Length: 87 bp
Type: Leu Anticodon: CAG at 35-37 (17068-17066) Score: 71.75
HMM Sc=40.26 Sec struct Sc=31.49
* | * | * | * | * | * | * | * | *
Seq: GCCCAGGTGGCGGAATTGGTaGACGCGCAGGTTTCAGGTACCTGTGGCCGAAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
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