R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 4 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|9294105|dbj|BAB01956.1| (AP002063) GTP-binding protein-like [Arabidopsis
thaliana]
Length = 537
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 537
0 150 300 450
Plus Strand HSPs:
Score = 448 (157.7 bits), Expect = 2.5e-41, P = 2.5e-41
Identities = 87/112 (77%), Positives = 97/112 (86%), Frame = +3
Query: 3 NRAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTAS 182
NRAFRAIRRSDVVALVI AMAC TEQD KIAERI +E KGC++ VNKWDTIPNKNQ+TA+
Sbjct: 320 NRAFRAIRRSDVVALVIEAMACITEQDLKIAERIEREGKGCLVVVNKWDTIPNKNQETAA 379
Query: 183 YYEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
+YE DVREKLRSL WAPIVYSTA+ GH VD I+VAA V+KE SRRL T+IL
Sbjct: 380 HYEDDVREKLRSLKWAPIVYSTAITGHSVDNIVVAAATVQKERSRRLSTAIL 431
>gi|12322014|gb|AAG51052.1|AC069473_14 (AC069473) GTPase, putative; 34281-30152
[Arabidopsis thaliana]
Length = 659
Frame 3 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | 659
0 150 300 450 600
Plus Strand HSPs:
Score = 448 (157.7 bits), Expect = 3.8e-41, P = 3.8e-41
Identities = 87/112 (77%), Positives = 97/112 (86%), Frame = +3
Query: 3 NRAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTAS 182
NRAFRAIRRSDVVALVI AMAC TEQD KIAERI +E KGC++ VNKWDTIPNKNQ+TA+
Sbjct: 442 NRAFRAIRRSDVVALVIEAMACITEQDLKIAERIEREGKGCLVVVNKWDTIPNKNQETAA 501
Query: 183 YYEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
+YE DVREKLRSL WAPIVYSTA+ GH VD I+VAA V+KE SRRL T+IL
Sbjct: 502 HYEDDVREKLRSLKWAPIVYSTAITGHSVDNIVVAAATVQKERSRRLSTAIL 553
>gi|1549379|gb|AAB50392.1| (U62737) putative protein [Synechococcus sp. PCC
7942]
Length = 208
Frame 3 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | | | 208
0 50 100 150 200
Plus Strand HSPs:
Score = 225 (79.2 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 46/112 (41%), Positives = 72/112 (64%), Frame = +3
Query: 3 NRAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTAS 182
NR+F+AIRR+DV LVI + T+QD K+A RI ++ + CVI VNKWD K+ T
Sbjct: 6 NRSFKAIRRADVCLLVIDVLDGVTDQDQKLAGRIEEDGRACVIVVNKWDA-HEKDSSTIY 64
Query: 183 YYEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
E+ +R++L L WAP+++ +A+ G V+ I+ V ++ RR+GTS++
Sbjct: 65 EVERQLRDRLYFLDWAPMIFVSALTGQRVEKILDQVNTVVEQHRRRVGTSVI 116
>gi|8928101|sp|P74120|ENGA_SYNY3 PROBABLE GTP-BINDING PROTEIN ENGA
>gi|7450580|pir||S75645 probable GTP binding protein slr1974 -
Synechocystis sp. (strain PCC 6803) >gi|1653291|dbj|BAA18206.1|
(D90912) hypothetical protein [Synechocystis sp.]
Length = 452
Frame 3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | || 452
0 150 300 450
Plus Strand HSPs:
Score = 181 (63.7 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 38/112 (33%), Positives = 65/112 (58%), Frame = +3
Query: 3 NRAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTAS 182
NRAF+AIRR+DVV V+ + TEQD K+A RI ++ + V+ +NKWD + K+ T
Sbjct: 250 NRAFKAIRRADVVLFVLDVLDGVTEQDLKLAGRIIEDGRAVVLVINKWDAV-EKDSYTIY 308
Query: 183 YYEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
+ + + +L + WA +++ +A G V I+ +E RR+ T+++
Sbjct: 309 EHREQLMARLYFMDWAEMIFVSAQTGLRVQKILDCVDIAAQEHRRRVTTAVI 360
>gi|12723672|gb|AAK04853.1|AE006309_2 (AE006309) GTP-binding protein
[Lactococcus lactis subsp. lactis]
Length = 436
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | 436
0 150 300
Plus Strand HSPs:
Score = 178 (62.7 bits), Expect = 5.9e-12, P = 5.9e-12
Identities = 42/111 (37%), Positives = 63/111 (56%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
RA RAI RSD+V +VI A E D +IA + KG +I VNKWDT+ K+ T
Sbjct: 250 RAMRAIDRSDIVLMVINAEEGIREYDMRIAGFAHEAGKGILIVVNKWDTL-EKDNDTMKN 308
Query: 186 YEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
+E ++R K + L +APIVY +A G ++ + E+ + R+ +S+L
Sbjct: 309 FELEIRTKFKFLDYAPIVYVSAKTGQRLNKLPDMIKEIHHAQNLRISSSVL 359
>gi|1730915|sp|P50743|ENGA_BACSU PROBABLE GTP-BINDING PROTEIN ENGA
>gi|7450583|pir||A69936 probable GTP binding protein yphC -
Bacillus subtilis >gi|1146219|gb|AAC83966.1| (L47648) similar to
Escherichia coli GTP-binding protein Era; putative [Bacillus
subtilis] >gi|2634702|emb|CAB14200.1| (Z99115) similar to
hypothetical proteins [Bacillus subtilis]
Length = 436
Frame 3 hits (HSPs): ______________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 436
0 150 300
__________________
Annotated Domains:
DOMO DM00006: RASTRANSFORMINGPROTEIN 2..140
DOMO DM08678: 141..257
DOMO DM08676: 293..401
Entrez np-binding site: GTP (BY SIMILARITY). 10..17
Entrez np-binding site: GTP (BY SIMILARITY). 57..61
Entrez np-binding site: GTP (BY SIMILARITY). 119..122
PFAM MMR_HSR1: GTPase of unknown function 72..331
PRODOM PD000414: ERA(14) YFGK(4) YCHF(3) 5..42
PRODOM PD002733: ERA(12) YFGK(4) O33212(2) 50..151
PRODOM PD200053: YPHC_BACSU 153..177
PRODOM PD000414: ERA(14) YFGK(4) YCHF(3) 179..213
PRODOM PD002733: ERA(12) YFGK(4) O33212(2) 221..334
PRODOM PD200057: YPHC_BACSU 336..362
PRODOM PD005185: Y329(2) YFGK(2) 364..432
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 10..17
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 182..189
__________________
Plus Strand HSPs:
Score = 174 (61.3 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 38/111 (34%), Positives = 67/111 (60%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
RA +AI RS+VVA+V+ EQD +IA + K VI VNKWD + +K++ T
Sbjct: 250 RALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV-DKDESTMKE 308
Query: 186 YEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
+E+++R+ + L +API++ +A+ + ++ A I+ + S R+ T++L
Sbjct: 309 FEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVL 359
>gi|6681650|dbj|BAA88823.1| (AB016077) phosphoglycerate dehydrogenase
[Streptococcus mutans]
Length = 436
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | 436
0 150 300
Plus Strand HSPs:
Score = 171 (60.2 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 39/111 (35%), Positives = 64/111 (57%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
RA RAI RSD+V +V+ A E D +IA + KG V+ VNKWD I K+ +T +
Sbjct: 250 RAMRAIDRSDIVLMVLNAEEGIREYDKRIAGFAHEAGKGIVVVVNKWDAI-KKDNRTVAQ 308
Query: 186 YEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
+E D+R+ + + +APIV+ +AV + + +V + + R+ +S+L
Sbjct: 309 WETDIRDNFQYIPYAPIVFVSAVTKQRLHKLPDVIKQVSQSQNTRIPSSVL 359
>gi|11280266|pir||B82899 conserved hypothetical ATP/GTP-binding protein UU383
[imported] - Ureaplasma urealyticum
>gi|6899367|gb|AAF30793.1|AE002135_9 (AE002135) conserved
hypothetical ATP/GTP-binding protein [Ureaplasma urealyticum]
Length = 442
Frame 3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 442
0 150 300
Plus Strand HSPs:
Score = 163 (57.4 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 36/111 (32%), Positives = 56/111 (50%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
R +AI RS ++ LV+ EQD + +I VNKWD I NKN T
Sbjct: 249 RTKKAIERSQLILLVLDGSEPFKEQDEVVGGLAYNANIPTIIIVNKWDNIINKNSHTMEM 308
Query: 186 YEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
++ +R + + L WAPIV+ +A+ + I A V ++ R++ TS+L
Sbjct: 309 VKKQIRSQFKYLSWAPIVFVSALDNKRIHTIFEAIEFVREQAMRKIATSLL 359
>gi|3978495|gb|AAC83369.1| (AF093625) ULF-250 protein [Rattus norvegicus]
Length = 188
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | 188
0 50 100 150
Plus Strand HSPs:
Score = 155 (54.6 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 37/111 (33%), Positives = 61/111 (54%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
RA +AI S+VV +V+ A A EQD ++A + + +I VNKWD I K+ T
Sbjct: 2 RALKAIDDSNVVLMVLDAEAGIREQDKRVAGFAHEAGRAMIIVVNKWDAI-EKDDHTVKD 60
Query: 186 YEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
+E +R + + L +APIV+ +A G +D + +V+ +R+ +S L
Sbjct: 61 FENMIRAEFKFLDYAPIVFVSAKTGQRLDRLPQMIKDVDANHRKRISSSTL 111
>gi|10174255|dbj|BAB05357.1| (AP001512) BH1638~unknown conserved protein
[Bacillus halodurans]
Length = 437
Frame 3 hits (HSPs): _________ _____________
__________________________________________________
Database sequence: | | | | 437
0 150 300
Plus Strand HSPs:
Score = 157 (55.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 34/111 (30%), Positives = 63/111 (56%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
R+ +AI RSDVV +V+ EQD KIA + + +I VNKWD + K+ +T
Sbjct: 250 RSLKAIERSDVVLVVLNGEEGIIEQDKKIAGYAHEAGRAIIIVVNKWDAV-EKDDKTLHR 308
Query: 186 YEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
++Q +R++ + L +AP+++ +A + ++ A +V + + R+ T +L
Sbjct: 309 FQQKIRDEFQFLDYAPVLFVSAKTKQRLQHVLPAVKKVSENHNLRVPTHVL 359
Score = 75 (26.4 bits), Expect = 5.0, P = 0.99
Identities = 15/65 (23%), Positives = 34/65 (52%), Frame = +3
Query: 18 AIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASYYEQD 197
AI+ +DV+ ++ T D ++A+ + + +K V+ VNK D P+ ++ +Y
Sbjct: 79 AIKEADVIIFIVNGREGVTAADQEVAKLLFRSKKPVVLGVNKIDH-PDMQEELYEFYSLG 137
Query: 198 VREKL 212
+ + +
Sbjct: 138 IGDPI 142
>gi|7471588|pir||F75290 conserved hypothetical protein - Deinococcus
radiodurans (strain R1) >gi|6460115|gb|AAF11852.1|AE002062_5
(AE002062) conserved hypothetical protein [Deinococcus radiodurans]
Length = 438
Frame 3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 438
0 150 300
Plus Strand HSPs:
Score = 151 (53.2 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 34/111 (30%), Positives = 64/111 (57%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
R+ AI RSDV+ LV+ A + + K+A K ++ VNKWD +P+ ++
Sbjct: 245 RSQAAIERSDVIWLVVNATDIG-DHELKLANLAYDSGKPVIVVVNKWDLVPDAELKST-- 301
Query: 186 YEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
E+D+ +KL + +AP VY++A+ + + ++ A+++ ++ R+GTS L
Sbjct: 302 -EKDLNQKLHHISFAPRVYTSAINDYGIHDMLAEAMKLYEKWQSRIGTSEL 351
>gi|12580678|emb|CAC26996.1| (AJ010592) hypothetical protein [Guillardia theta]
Length = 496
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 496
0 150 300 450
Plus Strand HSPs:
Score = 151 (53.2 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 38/112 (33%), Positives = 62/112 (55%), Frame = +3
Query: 3 NRAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNK-NQQTA 179
NR +++++S+ V +I T+QD KI++ I KE K CVI +NKWD I K ++QT
Sbjct: 310 NRTLKSVQKSECVLFMIDINNGITDQDVKISDIIVKENKCCVILLNKWDKIKKKMSKQTL 369
Query: 180 SYYEQDV-REKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
D+ + L L WA I++++A+ G + + S+ + TSIL
Sbjct: 370 I----DLCKTSLSKLSWAEIIFTSALNGENCKSVFDLIDSALTQYSKYVSTSIL 419
>gi|8134426|sp|O67749|ENGA_AQUAE PROBABLE GTP-BINDING PROTEIN ENGA
>gi|7450585|pir||A70465 probable GTP binding protein - Aquifex
aeolicus >gi|2984183|gb|AAC07715.1| (AE000763) GTP binding protein
Era [Aquifex aeolicus]
Length = 433
Frame 3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 433
0 150 300
Plus Strand HSPs:
Score = 133 (46.8 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 37/111 (33%), Positives = 59/111 (53%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
R+ +AI +DV LVI A T QD ++ I + KGCVI NK D P ++
Sbjct: 249 RSLKAIDLADVCCLVIDASEGPTRQDKRLGGLIERRYKGCVIVANKMDISPWSEEEL--- 305
Query: 186 YEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
E +R++L L +APIV++ A G V+ ++ V K+ +++ TS +
Sbjct: 306 -EGIIRKELFFLDFAPIVFTVATKGKGVEELLNWIDVVYKDYTKQHKTSFV 355
>gi|8134441|sp|Q9X1F8|ENGA_THEMA PROBABLE GTP-BINDING PROTEIN ENGA
>gi|7450588|pir||B72253 conserved hypothetical protein - Thermotoga
maritima (strain MSB8) >gi|4982010|gb|AAD36514.1|AE001796_6
(AE001796) conserved hypothetical protein [Thermotoga maritima]
Length = 439
Frame 3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 439
0 150 300
Plus Strand HSPs:
Score = 132 (46.5 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 29/114 (25%), Positives = 62/114 (54%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
R +I ++DVV +V+ A T QD +IA + + + V+ NKWD + ++ ++ +
Sbjct: 256 RVVDSIEKADVVVIVLDATQGITRQDQRIAGLVERRGRASVVVFNKWDLVEHREKRYDEF 315
Query: 186 YEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSILKSS 347
+ REKL + ++P+++++A G +D +I A + ++ +S + S+
Sbjct: 316 TKL-FREKLYFIDYSPLIFTSADKGWNIDRVIDAINLAYASYTTKVPSSAINSA 368
>gi|8134438|sp|P96128|ENGA_TREPA PROBABLE GTP-BINDING PROTEIN ENGA
>gi|7450587|pir||F71292 probable GTP-binding protein - syphilis
spirochete >gi|1732241|gb|AAB38705.1| (U70661) GTP-binding protein
[Treponema pallidum] >gi|3322993|gb|AAC65658.1| (AE001243)
GTP-binding protein [Treponema pallidum]
Length = 460
Frame 3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | 460
0 150 300 450
Plus Strand HSPs:
Score = 130 (45.8 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 29/114 (25%), Positives = 54/114 (47%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
RA + D+V ++ A +EQD KI +I K G + +NKWD + A
Sbjct: 272 RAISILNAVDIVLYIVDARDGFSEQDKKIVSQISKRNLGVIFLLNKWDLLEGSTSLIAKK 331
Query: 186 YEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSILKSS 347
++DVR + + P+V +A GH + + ++ + + ++ TS L ++
Sbjct: 332 -KRDVRTAFGKMNFVPVVPVSAKTGHGISDALHCVCKIFAQLNTKVETSALNTA 384
>gi|8928120|sp|Q9ZCP6|ENGA_RICPR PROBABLE GTP-BINDING PROTEIN ENGA
>gi|7450589|pir||H71673 hypothetical protein RP677 - Rickettsia
prowazekii >gi|3861214|emb|CAA15114.1| (AJ235272) unknown
[Rickettsia prowazekii]
Length = 447
Frame 3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 447
0 150 300
Plus Strand HSPs:
Score = 129 (45.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 27/108 (25%), Positives = 60/108 (55%), Frame = +3
Query: 18 AIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQT--ASYYE 191
+I+ ++ V L+I A+A +QD+ IA I E + +I VNKWD + ++ +Y
Sbjct: 258 SIKFANTVILMIDALAHVKQQDFNIASHIVNEGRSIIIVVNKWDLVKESEKEAFQKEFYY 317
Query: 192 QDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
Q + L + P+++ +A+ ++ ++ A +++ K ++++ T+ L
Sbjct: 318 Q-INTHLPQIKGVPVLFISAINKQNIEQVLDACLKIYKIWNKKITTNKL 365
>gi|3915379|sp|O25505|ENGA_HELPY PROBABLE GTP-BINDING PROTEIN ENGA
>gi|7450582|pir||B64624 GTP-binding protein homolog - Helicobacter
pylori (strain 26695) >gi|2313967|gb|AAD07883.1| (AE000594)
GTP-binding protein homologue (yphC) [Helicobacter pylori 26695]
Length = 458
Frame 3 hits (HSPs): _____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | || 458
0 150 300 450
__________________
Annotated Domains:
Entrez np-binding site: GTP (BY SIMILARITY). 15..22
Entrez np-binding site: GTP (BY SIMILARITY). 62..66
Entrez np-binding site: GTP (BY SIMILARITY). 123..126
PFAM MMR_HSR1: GTPase of unknown function 76..345
PRODOM PD000414: ERA(14) YFGK(4) YCHF(3) 10..45
PRODOM PD002733: ERA(12) YFGK(4) O33212(2) 51..156
PRODOM PD071911: Q9ZL09(1) Y834(1) 158..193
PRODOM PD000414: ERA(14) YFGK(4) YCHF(3) 197..234
PRODOM PD002733: ERA(12) YFGK(4) O33212(2) 237..317
PRODOM PD071917: Q9ZL09(1) Y834(1) 319..379
PRODOM PD005185: Y329(2) YFGK(2) 382..452
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 15..22
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 203..210
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 261..282
__________________
Plus Strand HSPs:
Score = 129 (45.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 35/113 (30%), Positives = 58/113 (51%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
R +A+ +S + LV+ A E D KI+ K G ++ +NKWD + A Y
Sbjct: 270 RTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILVLNKWDI------RYAPY 323
Query: 186 YE--QDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSILKS 344
E ++ K R L +AP++ ++ + +D I IEV + S+R+ TS+L S
Sbjct: 324 EEIIATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPTSLLNS 378
>gi|8134435|sp|Q9ZL09|ENGA_HELPJ PROBABLE GTP-BINDING PROTEIN ENGA
>gi|7450581|pir||E71891 probable GTP binding protein jhp0773 -
Helicobacter pylori (strain J99) >gi|4155327|gb|AAD06341.1|
(AE001507) putative [Helicobacter pylori J99]
Length = 462
Frame 3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | 462
0 150 300 450
Plus Strand HSPs:
Score = 126 (44.4 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 35/114 (30%), Positives = 58/114 (50%), Frame = +3
Query: 3 NRAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTAS 182
+R +A+ +S + LV+ A E D KI+ K G ++ +NKWD + A
Sbjct: 273 DRTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWDI------RYAP 326
Query: 183 YYE--QDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSILKS 344
Y E ++ K R L +AP++ ++ + +D I IEV + S+R+ TS L S
Sbjct: 327 YEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPTSSLNS 382
>gi|10799853|emb|CAC12931.1| (AL445403) putative GTP binding protein
[Streptomyces coelicolor]
Length = 492
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | 492
0 150 300 450
Plus Strand HSPs:
Score = 120 (42.2 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 26/97 (26%), Positives = 51/97 (52%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
R A+ +++V +++ A + QD +I + + V+ NKWDT+ +++ Y
Sbjct: 303 RTAAAVEKAEVAVILVDASESISVQDQRIVTMAVEAGRAIVVAYNKWDTL---DEERRYY 359
Query: 186 YEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIE 296
E+++ +L + WAP V +A G ++ + V AIE
Sbjct: 360 LEREIETELGQVAWAPRVNVSAQTGRHMEKL-VPAIE 395
>gi|11280270|pir||H81381 probable GTP-binding protein Cj0386 [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6967860|emb|CAB74222.1| (AL139075) putative GTP-binding protein
[Campylobacter jejuni]
Length = 460
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 460
0 150 300 450
Plus Strand HSPs:
Score = 117 (41.2 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 28/114 (24%), Positives = 61/114 (53%), Frame = +3
Query: 3 NRAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTAS 182
NR + + S + LV+ A E D +IA + K G +I +NKWD K++
Sbjct: 268 NRTEKILSHSQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWD----KSEMDFD 323
Query: 183 YYEQDVR-EKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSILKS 344
+++R ++ + L +AP++ +A++G V ++ +++ + ++++ TS L +
Sbjct: 324 KTVKELRLDRFKFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQTSKLNT 378
>gi|1813480|gb|AAB41682.1| (U63330) GTPase [Campylobacter jejuni]
Length = 383
Frame 3 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | 383
0 150 300
Plus Strand HSPs:
Score = 115 (40.5 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 29/115 (25%), Positives = 58/115 (50%), Frame = +3
Query: 3 NRAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTAS 182
NR + + S + LV+ A E D +IA + K G +I +NKWD +T
Sbjct: 268 NRTEKILSHSQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVK 327
Query: 183 YYEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTS-ILKSS 347
D + + L +AP++ +A++G V ++ +++ + ++++ TS ++K S
Sbjct: 328 ELHLD---RFKFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQTSKLMKIS 380
>gi|2146250|pir||S73692 probable GTPase/GTP-binding protein HI0136 - Mycoplasma
pneumoniae (strain ATCC 29342)
Length = 292
Frame 3 hits (HSPs): ___________________
Annotated Domains: __
__________________________________________________
Database sequence: | | | | | | | 292
0 50 100 150 200 250
__________________
Annotated Domains:
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 29..36
__________________
Plus Strand HSPs:
Score = 112 (39.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 26/107 (24%), Positives = 56/107 (52%), Frame = +3
Query: 18 AIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASYYEQD 197
AI RS+++ L++ +EQD I +I VNKWD + K+ T + +++
Sbjct: 101 AIARSNIILLMVDGSKPLSEQDEIIGGLAQAALIPVIILVNKWDLV-QKDSNTMAKFKKQ 159
Query: 198 VREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
++ + + L +APIV+ + + I ++++ ++++ TS+L
Sbjct: 160 LQSQFQHLSFAPIVFISVKNNKRLHTIFEQLQIIQEQLTKKISTSLL 206
>gi|11140878|sp|P77254|ENGA_ECOLI PROBABLE GTP-BINDING PROTEIN ENGA
Length = 490
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 490
0 150 300 450
Plus Strand HSPs:
Score = 114 (40.1 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 31/111 (27%), Positives = 57/111 (51%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
+ +AI ++VV LVI A ++QD + I + VI VNKWD + +Q+
Sbjct: 277 KTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGL---SQEVKEQ 333
Query: 186 YEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
++ + +L + +A + + +A+ G V + + E +RR+GTS+L
Sbjct: 334 VKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTSML 384
>gi|7450586|pir||F65027 probable GTPase/GTP-binding protein b2511 - Escherichia
coli (strain K-12) >gi|1788858|gb|AAC75564.1| (AE000337) putative
GTP-binding factor [Escherichia coli K12]
>gi|1805570|dbj|BAA16397.1| (D90880) similar to [SwissProt
Accession Number P44536] [Escherichia coli]
>gi|12516902|gb|AAG57621.1|AE005480_8 (AE005480) putative
GTP-binding factor [Escherichia coli O157:H7]
Length = 503
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 503
0 150 300 450
Plus Strand HSPs:
Score = 114 (40.1 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 31/111 (27%), Positives = 57/111 (51%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
+ +AI ++VV LVI A ++QD + I + VI VNKWD + +Q+
Sbjct: 290 KTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGL---SQEVKEQ 346
Query: 186 YEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
++ + +L + +A + + +A+ G V + + E +RR+GTS+L
Sbjct: 347 VKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTSML 397
>gi|8247924|sp|P75309|ENGA_MYCPN PROBABLE GTP-BINDING PROTEIN ENGA
>gi|11379528|gb|AAG34744.1|AE000034_1 (AE000034) GTPase, GTP
binding, see comments [Mycoplasma pneumoniae]
Length = 449
Frame 3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 449
0 150 300
Plus Strand HSPs:
Score = 112 (39.4 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 26/107 (24%), Positives = 56/107 (52%), Frame = +3
Query: 18 AIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASYYEQD 197
AI RS+++ L++ +EQD I +I VNKWD + K+ T + +++
Sbjct: 258 AIARSNIILLMVDGSKPLSEQDEIIGGLAQAALIPVIILVNKWDLV-QKDSNTMAKFKKQ 316
Query: 198 VREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
++ + + L +APIV+ + + I ++++ ++++ TS+L
Sbjct: 317 LQSQFQHLSFAPIVFISVKNNKRLHTIFEQLQIIQEQLTKKISTSLL 363
>gi|8928111|sp|Q9XCI8|ENGA_SALTY PROBABLE GTP-BINDING PROTEIN ENGA
>gi|4583532|gb|AAD25116.1|AF140550_7 (AF140550) YfgK [Salmonella
typhimurium]
Length = 268
Frame 3 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | | | 268
0 50 100 150 200 250
Plus Strand HSPs:
Score = 105 (37.0 bits), Expect = 0.00021, P = 0.00021
Identities = 29/111 (26%), Positives = 56/111 (50%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
+ +AI ++VV LVI A ++QD + I + VI VNKWD + +Q+
Sbjct: 55 KTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGL---SQEVKEQ 111
Query: 186 YEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
++ + +L + +A + + +A+ G V + + E +RR+ T++L
Sbjct: 112 VKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTAML 162
>gi|11280268|pir||A81744 GTP-binding protein, Era/ThdF family TC0076 [imported]
- Chlamydia muridarum (strain Nigg) >gi|7190111|gb|AAF38958.1|
(AE002275) GTP-binding protein, Era/ThdF family [Chlamydia
muridarum]
Length = 490
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 490
0 150 300 450
Plus Strand HSPs:
Score = 109 (38.4 bits), Expect = 0.00021, P = 0.00021
Identities = 34/112 (30%), Positives = 56/112 (50%), Frame = +3
Query: 3 NRAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTAS 182
+R +AI R+D+ LVI A + QD +I I + +K VI VNKWD + +
Sbjct: 300 SRTEKAISRADICLLVIDATQQLSYQDKRILSLIARYKKPHVILVNKWDLMFGVRME--- 356
Query: 183 YYEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
+Y QD+R+ + A I+ +A + I A +V + +L TS++
Sbjct: 357 HYVQDLRKMDPYIGQARILCISAKQRRNLSQIFSAVDDVYTIATTKLSTSLV 408
>gi|7595274|gb|AAF64397.1|AF148553_1 (AF148553) hypothetical protein
[Thiobacillus denitrificans]
Length = 281
Frame 3 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | | 281
0 50 100 150 200 250
Plus Strand HSPs:
Score = 103 (36.3 bits), Expect = 0.00038, P = 0.00038
Identities = 25/92 (27%), Positives = 49/92 (53%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
+ +AI ++VV LV+ A +EQD +A + + + V+ VNKWD + + +
Sbjct: 62 KTLQAIEDANVVVLVLDARENISEQDAHLAGFVLETGRALVVAVNKWDGLSPEQRDDV-- 119
Query: 186 YEQDVREKLRSLVWAPIVYSTAVAGHXVDXII 281
++D+ KL L +A Y +A+ G ++ ++
Sbjct: 120 -KRDIGRKLAFLDFARFNYISALKGKGLESLL 150
>gi|12045187 ref|NP_072998.1| conserved hypothetical GTP-binding protein
[Mycoplasma genitalium] >gi|1723150|sp|P47571|ENGA_MYCGE PROBABLE
GTP-BINDING PROTEIN ENGA >gi|1361589|pir||D64236 hypothetical
protein homolog MG329 - Mycoplasma genitalium
>gi|3844909|gb|AAC71553.1| (U39714) conserved hypothetical
GTP-binding protein [Mycoplasma genitalium]
Length = 448
Frame 3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 448
0 150 300
Plus Strand HSPs:
Score = 106 (37.3 bits), Expect = 0.00040, P = 0.00040
Identities = 26/107 (24%), Positives = 53/107 (49%), Frame = +3
Query: 18 AIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASYYEQD 197
AI RS+V+ L++ +EQD I +I VNKWD + KN T + Y++
Sbjct: 257 AIARSNVILLMVDGSKPISEQDEVIGGLAQAALIPVIILVNKWDLVL-KNNNTTNAYKKM 315
Query: 198 VREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
++ + L +AP+++ + + ++ I ++ + ++ T +L
Sbjct: 316 LKLHFKHLDFAPVLFISVLKNQRLNTIFEQLKIIQSQLETKVATPLL 362
>gi|8134424|sp|O51461|ENGA_BORBU PROBABLE GTP-BINDING PROTEIN ENGA
>gi|7450584|pir||C70163 GTP-binding protein homolog - Lyme disease
spirochete >gi|2688422|gb|AAC66872.1| (AE001153) GTP-binding
protein [Borrelia burgdorferi]
Length = 433
Frame 3 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 433
0 150 300
Plus Strand HSPs:
Score = 105 (37.0 bits), Expect = 0.00048, P = 0.00048
Identities = 24/63 (38%), Positives = 34/63 (53%), Frame = +3
Query: 3 NRAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTAS 182
NRA + I D+V L+I T QD KIA + K+ KG VI +KWD + ++
Sbjct: 247 NRALKVIDMVDIVFLLIDVQEKLTSQDKKIAHYVTKKGKGIVIVFSKWDLV----DESKG 302
Query: 183 YYE 191
Y+E
Sbjct: 303 YFE 305
>gi|11280265|pir||B82284 GTP-binding protein VC0763 [imported] - Vibrio
cholerae (group O1 strain N16961) >gi|9655209|gb|AAF93928.1|
(AE004161) GTP-binding protein [Vibrio cholerae]
Length = 494
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 494
0 150 300 450
Plus Strand HSPs:
Score = 105 (37.0 bits), Expect = 0.00058, P = 0.00058
Identities = 28/111 (25%), Positives = 56/111 (50%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
+ +AI ++VV LV+ A ++QD + + VI VNKWD + + +
Sbjct: 280 KTLQAIEDANVVLLVVDARENISDQDLSLLGFALNSGRSIVIAVNKWDGL---SFDVKEH 336
Query: 186 YEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
++++ +L + +A I + +A+ G V + + E + + R+GTS+L
Sbjct: 337 VKKELDRRLGFVDFARIHFISALHGTGVGHLFESVQEAYRSATTRVGTSVL 387
>gi|8134429|sp|O84709|ENGA_CHLTR PROBABLE GTP-BINDING PROTEIN ENGA
>gi|7450591|pir||H71480 probable GTPase/GTP-binding protein -
Chlamydia trachomatis (serotype D, strain UW3/Cx)
>gi|3329158|gb|AAC68298.1| (AE001341) GTPase/GTP-binding protein
[Chlamydia trachomatis]
Length = 490
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 490
0 150 300 450
Plus Strand HSPs:
Score = 104 (36.6 bits), Expect = 0.00074, P = 0.00074
Identities = 33/112 (29%), Positives = 56/112 (50%), Frame = +3
Query: 3 NRAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTAS 182
+R +AI R+D+ LVI A + QD +I I + +K VI VNKWD + +
Sbjct: 300 SRTEKAISRTDICLLVIDATQQLSYQDKRILSMIARYKKPHVILVNKWDLMFGVRME--- 356
Query: 183 YYEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
+Y QD+R+ + A I+ +A + I A ++ + +L TS++
Sbjct: 357 HYVQDLRKMDPYIGQARILCISAKQRRNLLQIFSAIDDIYTIATTKLSTSLV 408
>gi|11132317|sp|P57662|ENGA_BUCAI PROBABLE GTP-BINDING PROTEIN ENGA
>gi|10039257|dbj|BAB13291.1| (AP001119) hypothetical GTP-binding
protein [Buchnera sp. APS]
Length = 453
Frame 3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | || 453
0 150 300 450
Plus Strand HSPs:
Score = 103 (36.3 bits), Expect = 0.00085, P = 0.00085
Identities = 28/111 (25%), Positives = 54/111 (48%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
+ + I +S+V+ L+I A QD +A+ I KG V+ VNK D N
Sbjct: 261 KTLQTIEKSNVILLIIDASLQTCHQDLSLADFIIHSGKGIVVVVNKCDLF---NSVELKK 317
Query: 186 YEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
++ ++ KL+ L ++ I + +A+ + + + E ++ R++ TS L
Sbjct: 318 IKELIKSKLKFLYFSKIHFISALYKKGIFQLFKSIKESYEDSKRKISTSTL 368
>gi|8134423|sp|O33212|ENGA_MYCTU PROBABLE GTP-BINDING PROTEIN ENGA
>gi|7450579|pir||H70504 probable GTP-binding protein -
Mycobacterium tuberculosis (strain H37RV)
>gi|2326756|emb|CAB10970.1| (Z98268) hypothetical protein Rv1713
[Mycobacterium tuberculosis]
Length = 463
Frame 3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | 463
0 150 300 450
Plus Strand HSPs:
Score = 102 (35.9 bits), Expect = 0.0011, P = 0.0011
Identities = 26/113 (23%), Positives = 51/113 (45%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
R AI ++V ++I A TEQD ++ + + + V+ NKWD + ++
Sbjct: 274 RTHAAIDSAEVAIVLIDASQPLTEQDLRVISMVIEAGRALVLAYNKWDLVDEDRRELL-- 331
Query: 186 YEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSILKS 344
++++ +L + WA V +A G V ++ A + R+ T L +
Sbjct: 332 -QREIDRELVQVRWAQRVNISAKTGRAVHKLVPAMEDALASWDTRIATGPLNT 383
>gi|8134434|sp|Q9Z762|ENGA_CHLPN PROBABLE GTP-BINDING PROTEIN ENGA
>gi|7450590|pir||D72028 GTP-binding protein CP1025 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4377159|gb|AAD18982.1| (AE001665) GTPase/GTP-binding protein
[Chlamydophila pneumoniae CWL029] >gi|7189939|gb|AAF38801.1|
(AE002260) GTP-binding protein [Chlamydophila pneumoniae AR39]
>gi|8979218|dbj|BAA99052.1| (AP002548) GTPase/GTP-binding protein
[Chlamydophila pneumoniae J138]
Length = 487
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 487
0 150 300 450
Plus Strand HSPs:
Score = 100 (35.2 bits), Expect = 0.0020, P = 0.0020
Identities = 30/115 (26%), Positives = 54/115 (46%), Frame = +3
Query: 3 NRAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTAS 182
+R +AI R+D+ LVI A + + +I I K +K +I +NKWD + +
Sbjct: 298 SRTEKAISRADICLLVIDATQKLSSYEKRILSLISKRKKPHIILINKWDLLEEVRME--- 354
Query: 183 YYEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSILKSS 347
+Y +D+R L A ++ +A + I A E+ S ++ T I+ +
Sbjct: 355 HYCKDLRATDPYLGQAKMLCISATTKRNLKKIFSAIDELHHVVSNKVPTPIVNKT 409
>gi|11280271|pir||G81149 essential GTPase NMB0852 [imported] - Neisseria
meningitidis (group B strain MD58) >gi|7226088|gb|AAF41263.1|
(AE002438) essential GTPase [Neisseria meningitidis MC58]
Length = 485
Frame 3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | 485
0 150 300 450
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.0032, P = 0.0032
Identities = 24/91 (26%), Positives = 46/91 (50%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
+A +A+ ++V LV+ A +QD IA + + V+ VNKWD I + ++
Sbjct: 250 KAMQAVEAANVAVLVLDAQQDIADQDATIAGFALEAGRALVVAVNKWDGISEERREQV-- 307
Query: 186 YEQDVREKLRSLVWAPIVYSTAVAGHXVDXI 278
++D+ KL L +A + +A+ +D +
Sbjct: 308 -KRDINRKLYFLDFAKFHFISALKERGIDGL 337
>gi|11280269|pir||E81871 probable GTP-binding protein NMA1063 [imported] -
Neisseria meningitidis (group A strain Z2491)
>gi|7379759|emb|CAB84327.1| (AL162755) putative GTP-binding protein
[Neisseria meningitidis Z2491]
Length = 485
Frame 3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | 485
0 150 300 450
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.0032, P = 0.0032
Identities = 24/91 (26%), Positives = 46/91 (50%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
+A +A+ ++V LV+ A +QD IA + + V+ VNKWD I + ++
Sbjct: 250 KAMQAVEAANVAVLVLDAQQDIADQDATIAGFALEAGRALVVAVNKWDGISEERREQV-- 307
Query: 186 YEQDVREKLRSLVWAPIVYSTAVAGHXVDXI 278
++D+ KL L +A + +A+ +D +
Sbjct: 308 -KRDINRKLYFLDFAKFHFISALKERGIDGL 337
>gi|8134431|sp|Q49884|ENGA_MYCLE PROBABLE GTP-BINDING PROTEIN ENGA
>gi|2145946|pir||S72953 probable GTP-binding protein -
Mycobacterium leprae >gi|467147|gb|AAA50911.1| (U00021) u0247e
[Mycobacterium leprae]
Length = 461
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | 461
0 150 300 450
Plus Strand HSPs:
Score = 97 (34.1 bits), Expect = 0.0038, P = 0.0038
Identities = 24/94 (25%), Positives = 44/94 (46%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
R AI ++VV ++I A T QD ++ + + V+ NKWD + ++
Sbjct: 272 RTHGAIDSAEVVIMLIDASEPLTGQDQRVLSMVIDAGRALVLAFNKWDLV---DEDRCDL 328
Query: 186 YEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVA 287
E+++ +L + WA V +A G V ++ A
Sbjct: 329 LEREIDRELVQVRWAQRVNISAKTGRAVQKLVPA 362
>gi|8134430|sp|O87407|ENGA_NEIGO PROBABLE GTP-BINDING PROTEIN ENGA
>gi|3722226|gb|AAC63508.1| (AF058711) essential Gc protein
[Neisseria gonorrhoeae]
Length = 485
Frame 3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | 485
0 150 300 450
Plus Strand HSPs:
Score = 97 (34.1 bits), Expect = 0.0041, P = 0.0041
Identities = 24/91 (26%), Positives = 46/91 (50%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
+A +A+ ++V LV+ A +QD IA + + V+ VNKWD I + ++
Sbjct: 250 KAMQAVEAANVAVLVLDAQQDIADQDATIAGFALEAGRALVVAVNKWDGISEERREQV-- 307
Query: 186 YEQDVREKLRSLVWAPIVYSTAVAGHXVDXI 278
++D+ KL L +A + +A+ +D +
Sbjct: 308 -KRDISRKLYFLDFAKFHFISALKERGIDGL 337
>gi|12720316|gb|AAK02189.1| (AE006045) unknown [Pasteurella multocida]
Length = 510
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 510
0 150 300 450
Plus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.0057, P = 0.0056
Identities = 28/111 (25%), Positives = 55/111 (49%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
+ +AI+ ++VV L I A ++QD + I + VI VNKWD + NQ
Sbjct: 296 KTLQAIQDANVVLLTIDAREGVSDQDLSLLGFILNAGRSLVIVVNKWDGL---NQDIKDQ 352
Query: 186 YEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
+ ++ +L + +A + + +A+ G V + + E ++++ TS+L
Sbjct: 353 VKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIQEAYACATQKMTTSML 403
>gi|1175159|sp|P44536|ENGA_HAEIN PROBABLE GTP-BINDING PROTEIN ENGA
>gi|1074279|pir||F64143 probable GTPase/GTP-binding protein HI0136
- Haemophilus influenzae (strain Rd KW20)
>gi|1573089|gb|AAC21807.1| (U32699) GTP-binding protein
[Haemophilus influenzae Rd]
Length = 504
Frame 3 hits (HSPs): ____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 504
0 150 300 450
__________________
Annotated Domains:
DOMO DM00006: RASTRANSFORMINGPROTEIN 2..141
Entrez np-binding site: GTP (BY SIMILARITY). 10..17
Entrez np-binding site: GTP (BY SIMILARITY). 57..61
Entrez np-binding site: GTP (BY SIMILARITY). 120..123
PFAM MMR_HSR1: GTPase of unknown function 72..368
PRODOM PD000414: ERA(14) YFGK(4) YCHF(3) 6..43
PRODOM PD002733: ERA(12) YFGK(4) O33212(2) 47..153
PRODOM PD051757: YFGK_HAEIN 155..210
PRODOM PD000414: ERA(14) YFGK(4) YCHF(3) 212..254
PRODOM PD002733: ERA(12) YFGK(4) O33212(2) 259..373
PRODOM PD200061: YFGK_HAEIN 375..406
PRODOM PD005185: Y329(2) YFGK(2) 408..471
PRODOM PD029384: YFGK(2) 473..502
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 10..17
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 222..229
__________________
Plus Strand HSPs:
Score = 92 (32.4 bits), Expect = 0.015, P = 0.015
Identities = 27/111 (24%), Positives = 55/111 (49%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
+ +AI+ ++VV L I A ++QD + I + VI VNKWD + +Q
Sbjct: 290 KTLQAIQDANVVLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWDGL---DQDVKDR 346
Query: 186 YEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
+ ++ +L + +A + + +A+ G V + + E ++++ TS+L
Sbjct: 347 VKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMTTSLL 397
>gi|11280267|pir||D82804 GTP-binding protein XF0465 [imported] - Xylella
fastidiosa (strain 9a5c) >gi|9105311|gb|AAF83275.1|AE003896_12
(AE003896) GTP-binding protein [Xylella fastidiosa]
Length = 465
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 465
0 150 300 450
Plus Strand HSPs:
Score = 90 (31.7 bits), Expect = 0.022, P = 0.022
Identities = 27/109 (24%), Positives = 46/109 (42%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
+ + I + V L++ A T+QD + I K V+ +NKWD + ++ A
Sbjct: 253 KTLQVIEQCQVAVLLLDAGEGVTDQDATVLAAILDAGKALVVAMNKWDGLGTYQREQA-- 310
Query: 186 YEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTS 332
E + KL + WA +V +A G + + A R+ TS
Sbjct: 311 -EDLLSRKLGFVNWAEVVRLSAKHGSGLRELFRAIHRAHVSALRQFSTS 358
>gi|10176988|dbj|BAB10220.1| (AB010077) GTP-binding protein-like [Arabidopsis
thaliana]
Length = 514
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 514
0 150 300 450
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 0.087, P = 0.083
Identities = 29/119 (24%), Positives = 57/119 (47%), Frame = +3
Query: 15 RAIRRSDVVALVIXA-----MACX-TEQDYKIAERIXKERKGCVIXVNKWDTIPNK-NQQ 173
+++ R+ V+ALV+ A C T + IA R +E +G V+ VNK D + + N +
Sbjct: 273 KSLMRAHVIALVLDAEEIIKAKCSMTHSEVVIARRAVEEGRGLVVIVNKMDRLRGRENSE 332
Query: 174 TASYYEQDVREKLRSLV----WAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
++ V ++++++ P+V+ +A+ G ++ + K RL T L
Sbjct: 333 MYKKIKEAVPIEIQTVIPQITGIPVVFISALEGRGRMEVMKEVTDTYKRWCSRLSTGRL 391
>gi|7448683|pir||A72397 thiophene oxidation protein ThdF-related GTPase -
Thermotoga maritima (strain MSB8)
>gi|4980765|gb|AAD35356.1|AE001709_2 (AE001709) thiophene oxidation
protein ThdF-related GTPase [Thermotoga maritima]
Length = 450
Frame 3 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | 450
0 150 300
Plus Strand HSPs:
Score = 82 (28.9 bits), Expect = 0.15, P = 0.14
Identities = 18/56 (32%), Positives = 32/56 (57%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQ 173
R + I ++D+V V+ A + E+D KI ERI +R ++ +NK D + N++
Sbjct: 284 RTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRY--LVVINKVDVVEKINEE 337
>gi|4467677|emb|CAB37790.1| (AJ239679) GTP-binding protein homologue
[Helicobacter pylori]
Length = 170
Frame 3 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | 170
0 50 100 150
Plus Strand HSPs:
Score = 78 (27.5 bits), Expect = 0.15, P = 0.14
Identities = 15/56 (26%), Positives = 29/56 (51%), Frame = +3
Query: 12 FRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTA 179
F+A + SD++ V+ + +++D K+ + K C + +NK DT K + A
Sbjct: 80 FKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDTDKEKERAYA 135
>gi|11348092|pir||B83171 conserved hypothetical protein PA3799 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9949972|gb|AAG07186.1|AE004798_9 (AE004798) conserved
hypothetical protein [Pseudomonas aeruginosa]
Length = 493
Frame 3 hits (HSPs): ______ ____________
__________________________________________________
Database sequence: | | | | | 493
0 150 300 450
Plus Strand HSPs:
Score = 82 (28.9 bits), Expect = 0.17, P = 0.16
Identities = 27/113 (23%), Positives = 52/113 (46%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASY 185
+ +AI+ ++VV V+ A E D + + + + VI +NKWD + + Y
Sbjct: 272 KTLQAIQDANVVIFVMDAREGVVEHDLNLLGFVLETGRALVIALNKWDGMEAAERD---Y 328
Query: 186 YEQDVREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSILKS 344
+ ++ +L + +A I + +A+ G V + + E + R TS L S
Sbjct: 329 VKTELERRLLFVDFADIHFISALHGTGVGHLYKSVQESFRSAVTRWPTSRLTS 381
Score = 75 (26.4 bits), Expect = 5.9, P = 1.0
Identities = 17/50 (34%), Positives = 26/50 (52%), Frame = +3
Query: 6 RAFRAIRRSDVVALVIXAMACXTEQDYKIAERIXKERKGCVIXVNKWDTI 155
++ +AI +D V ++ + A T D IAE + K K + NK DTI
Sbjct: 74 QSLQAIEEADAVLFLVDSRAGMTAADQMIAEHLRKRNKRSFLIANKVDTI 123
>gi|1480863|gb|AAB05810.1| (U63332) super cysteine rich protein; SCRP [Homo
sapiens]
Length = 46
Frame 2 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | 46
0 20 40
Plus Strand HSPs:
Score = 47 (16.5 bits), Expect = 0.25, Sum P(2) = 0.22
Identities = 8/23 (34%), Positives = 9/23 (39%), Frame = +2
Query: 221 CLGSNCLFYCCSWSXC*QXYCCC 289
C C CC C +CCC
Sbjct: 15 CCCCCCCCCCCCCCCCCCCFCCC 37
Score = 35 (12.3 bits), Expect = 0.25, Sum P(2) = 0.22
Identities = 4/5 (80%), Positives = 4/5 (80%), Frame = +2
Query: 35 CCCSC 49
CCC C
Sbjct: 11 CCCCC 15
Score = 35 (12.3 bits), Expect = 0.25, Sum P(2) = 0.22
Identities = 4/5 (80%), Positives = 4/5 (80%), Frame = +2
Query: 35 CCCSC 49
CCC C
Sbjct: 12 CCCCC 16
>gi|12736003 ref|XP_011969.1| UHS KerB [Homo sapiens]
Length = 187
Frame 2 hits (HSPs): ____ ________________
__________________________________________________
Database sequence: | | | | | 187
0 50 100 150
Plus Strand HSPs:
Score = 65 (22.9 bits), Expect = 0.90, Sum P(2) = 0.59
Identities = 12/31 (38%), Positives = 15/31 (48%), Frame = +2
Query: 197 CQGEASLTCLGSNCLFYCCSWSXC*QXYCCC 289
C +C S+C CCS S C + CCC
Sbjct: 125 CSSGCGSSCCQSSCCKPCCSQSSCCKP-CCC 154
Score = 61 (21.5 bits), Expect = 4.3, Sum P(2) = 0.99
Identities = 11/30 (36%), Positives = 13/30 (43%), Frame = +2
Query: 197 CQGEASLTCLGSNCLFYCCSWSXC*QXYCC 286
C +C S+C CCS S C CC
Sbjct: 154 CSSGCGSSCCQSSCCKPCCSQSSCCVPICC 183
Score = 42 (14.8 bits), Expect = 0.90, Sum P(2) = 0.59
Identities = 8/14 (57%), Positives = 8/14 (57%), Frame = +2
Query: 5 SSISCYSSF*CCCS 46
S SCY CCCS
Sbjct: 86 SQCSCYKP--CCCS 97
>gi|10567824 ref|NP_066384.1| UHS KerB [Homo sapiens]
>gi|10720064|sp|O75690|KRUB_HUMAN KERATIN, ULTRA HIGH-SULFUR MATRIX
PROTEIN B (UHS KERATIN B) (UHS KERB) >gi|3228237|emb|CAA07188.1|
(AJ006692) ultra high sulfer keratin [Homo sapiens]
Length = 194
Frame 2 hits (HSPs): ____ ________________
__________________________________________________
Database sequence: | | | | | 194
0 50 100 150
Plus Strand HSPs:
Score = 65 (22.9 bits), Expect = 1.0, Sum P(2) = 0.64
Identities = 12/31 (38%), Positives = 15/31 (48%), Frame = +2
Query: 197 CQGEASLTCLGSNCLFYCCSWSXC*QXYCCC 289
C +C S+C CCS S C + CCC
Sbjct: 132 CSSGCGSSCCQSSCCKPCCSQSSCCKP-CCC 161
Score = 61 (21.5 bits), Expect = 4.9, Sum P(2) = 0.99
Identities = 11/30 (36%), Positives = 13/30 (43%), Frame = +2
Query: 197 CQGEASLTCLGSNCLFYCCSWSXC*QXYCC 286
C +C S+C CCS S C CC
Sbjct: 161 CSSGCGSSCCQSSCCKPCCSQSSCCVPICC 190
Score = 42 (14.8 bits), Expect = 1.0, Sum P(2) = 0.64
Identities = 8/14 (57%), Positives = 8/14 (57%), Frame = +2
Query: 5 SSISCYSSF*CCCS 46
S SCY CCCS
Sbjct: 93 SQCSCYKP--CCCS 104
>gi|9827742|emb|CAB97831.1| (AL160493) possible probable GTP-binding protein
enga [Leishmania major]
Length = 220
Frame 3 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | | 220
0 50 100 150 200
Plus Strand HSPs:
Score = 75 (26.4 bits), Expect = 1.8, P = 0.83
Identities = 23/106 (21%), Positives = 53/106 (50%), Frame = +3
Query: 21 IRRSDVVALVIXAMACXTEQ-DYKIAERIXKERKGCVIXVNKWDTIPNKNQQTASYYEQD 197
IR + VV +V A + D I ++ +E + V+ NKWD + +++ TA +
Sbjct: 33 IRYAHVVIVVFDATEGHPNKYDMSILHKVAQEGRPFVLCANKWDAVLDQSA-TAEAIDFK 91
Query: 198 VREKLRSLVWAPIVYSTAVAGHXVDXIIVAAIEVEKEXSRRLGTSIL 338
++ +++ + ++ V +A G + ++ +E+ ++R+ S L
Sbjct: 92 IKRQVQEVKYSNAVVVSAHTGMNLTLLMDQVLELYDTWNKRVRRSEL 138
WARNING: HSPs involving 4 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.93
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.319 0.131 0.368
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.357 0.157 0.669
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.350 0.158 0.473
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.353 0.148 0.468
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.361 0.156 0.554
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.344 0.149 0.522
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 115 108 10. 69 3 12 22 0.12 32
29 0.12 34
+2 0 116 107 10. 69 3 12 22 0.12 32
29 0.12 34
+1 0 116 109 10. 69 3 12 22 0.12 32
29 0.12 34
-1 0 116 108 10. 69 3 12 22 0.12 32
29 0.12 34
-2 0 116 107 10. 69 3 12 22 0.12 32
29 0.12 34
-3 0 115 107 10. 69 3 12 22 0.12 32
29 0.12 34
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 54
No. of states in DFA: 584 (58 KB)
Total size of DFA: 142 KB (192 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 95.18u 1.04s 96.22t Elapsed: 00:00:16
Total cpu time: 95.27u 1.05s 96.32t Elapsed: 00:00:17
Start: Wed Oct 3 11:32:43 2001 End: Wed Oct 3 11:33:00 2001
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000