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Cancer Genome Anatomy Project |
| NCI > CGAP > GAI > SNP Maps > Chr 1 > SNPs Localized to Interval 15 |
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D1S252 - D1S498 148.6 cM - 154.3 cM / 383.76 cR - 542.18 cR |
| UniGene | Gene Symbol | Description | SNP IDs | SNP Summary | CGAP Gene Info |
| Confirmed SNPs | |||||
| Hs.54680 | C1orf51 | Chromosome 1 open reading frame 51 | CGAP-C-53233 |
SNPs | Gene Info |
| Hs.50732 | PRKAB2 | Protein kinase, AMP-activated, beta 2 non-catalytic subunit | CGAP-C-48619 |
SNPs | Gene Info |
| Validated SNPs | |||||
| Hs.710711 | - | Transcribed locus | CGAP-C-57137 |
SNPs | Gene Info |
| Hs.418093 | PTGFRN | Prostaglandin F2 receptor negative regulator | CGAP-C-50825 CGAP-C-51496 CGAP-C-58209 CGAP-C-61832 CGAP-C-64935 |
SNPs | Gene Info |
| Hs.435938 | MAN1A2 | Mannosidase, alpha, class 1A, member 2 | CGAP-C-54042 CGAP-C-240532 |
SNPs | Gene Info |
| Hs.602811 | - | CDNA FLJ40810 fis, clone TRACH2009743 | CGAP-C-250074 |
SNPs | Gene Info |
| Hs.546434 | VTCN1 | V-set domain containing T cell activation inhibitor 1 | CGAP-C-61072 |
SNPs | Gene Info |
| Hs.708307 | LOC100131261 | Similar to hCG1728885 | CGAP-C-607994 |
SNPs | Gene Info |
| Hs.523506 | WARS2 | Tryptophanyl tRNA synthetase 2, mitochondrial | CGAP-C-52838 |
SNPs | Gene Info |
| Hs.654399 | HSD3B2 | Hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 | CGAP-C-269179 CGAP-C-269180 |
SNPs | Gene Info |
| Hs.487296 | PHGDH | Phosphoglycerate dehydrogenase | CGAP-C-251829 |
SNPs | Gene Info |
| Hs.632370 | UBE4B | Ubiquitination factor E4B (UFD2 homolog, yeast) | CGAP-C-272164 CGAP-C-610458 |
SNPs | Gene Info |
| Hs.487360 | NOTCH2 | Notch homolog 2 (Drosophila) | CGAP-C-243256 |
SNPs | Gene Info |
| Hs.504320 | - | Transcribed locus, strongly similar to NP_001025962.1 G protein-coupled receptor 89B [Gallus gallus] | CGAP-C-47905 |
SNPs | Gene Info |
| Hs.654651 | PDE4DIP | Phosphodiesterase 4D interacting protein | CGAP-C-56583 CGAP-C-57508 CGAP-C-59686 |
SNPs | Gene Info |
| Hs.562154 | ACP6 | Acid phosphatase 6, lysophosphatidic | CGAP-C-61217 |
SNPs | Gene Info |
| Hs.191164 | CHD1L | Chromodomain helicase DNA binding protein 1-like | CGAP-C-47638 CGAP-C-47639 |
SNPs | Gene Info |
| Hs.312098 | ADAM15 | ADAM metallopeptidase domain 15 | CGAP-C-618209 CGAP-C-618210 |
SNPs | Gene Info |
| Hs.632483 | ROBLD3 | Roadblock domain containing 3 | CGAP-C-50043 |
SNPs | Gene Info |
| Hs.530479 | PMF1 | Polyamine-modulated factor 1 | CGAP-C-253141 CGAP-C-606742 |
SNPs | Gene Info |
| Hs.81071 | ECM1 | Extracellular matrix protein 1 | CGAP-C-60714 CGAP-C-262745 |
SNPs | Gene Info |
| Hs.713518 | MCL1 | Myeloid cell leukemia sequence 1 (BCL2-related) | CGAP-C-269080 CGAP-C-269089 |
SNPs | Gene Info |
| Predicted SNPs | |||||
| Hs.125482 | SLC22A15 | Solute carrier family 22, member 15 | CGAP-C-2482584 CGAP-C-2482586 CGAP-C-2482587 |
SNPs | Gene Info |
| Hs.356216 | FAM46C | Family with sequence similarity 46, member C | CGAP-C-2445786 CGAP-C-2445787 CGAP-C-2445788 CGAP-C-2445790 CGAP-C-2445791 CGAP-C-2445792 |
SNPs | Gene Info |
| Hs.418093 | PTGFRN | Prostaglandin F2 receptor negative regulator | CGAP-C-2487872 |
SNPs | Gene Info |
| Hs.602811 | - | CDNA FLJ40810 fis, clone TRACH2009743 | CGAP-C-2410890 |
SNPs | Gene Info |
| Hs.146196 | TBX15 | T-box 15 | CGAP-C-2399753 |
SNPs | Gene Info |
| Hs.512636 | PNRC2 | Proline-rich nuclear receptor coactivator 2 | CGAP-C-2393776 |
SNPs | Gene Info |
| Hs.523506 | WARS2 | Tryptophanyl tRNA synthetase 2, mitochondrial | CGAP-C-2428436 |
SNPs | Gene Info |
| Hs.356368 | - | Transcribed locus, strongly similar to XP_520788.2 PREDICTED: RecQ protein-like [Pan troglodytes] | CGAP-C-2478256 |
SNPs | Gene Info |
| Hs.487296 | PHGDH | Phosphoglycerate dehydrogenase | CGAP-C-2399555 |
SNPs | Gene Info |
| Hs.487360 | NOTCH2 | Notch homolog 2 (Drosophila) | CGAP-C-2471890 CGAP-C-2471891 |
SNPs | Gene Info |
| Hs.364941 | HSD3B1 | Hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 | CGAP-C-2392129 |
SNPs | Gene Info |
| Hs.559115 | GPR89A | G protein-coupled receptor 89A | CGAP-C-2486683 |
SNPs | Gene Info |
| Hs.645432 | GPR89A | G protein-coupled receptor 89A | CGAP-C-2474642 CGAP-C-2474643 |
SNPs | Gene Info |
| Hs.356873 | RBM8A | RNA binding motif protein 8A | CGAP-C-2389633 CGAP-C-2389639 |
SNPs | Gene Info |
| Hs.591455 | - | Transcribed locus | CGAP-C-2389631 CGAP-C-2389632 |
SNPs | Gene Info |
| Hs.435761 | PIAS3 | Protein inhibitor of activated STAT, 3 | CGAP-C-2458931 |
SNPs | Gene Info |
| Hs.444751 | PDZK1 | PDZ domain containing 1 | CGAP-C-2403589 |
SNPs | Gene Info |
| Hs.533977 | - | Transcribed locus, strongly similar to NP_006463.3 thioredoxin interacting protein [Homo sapiens] | CGAP-C-2412883 |
SNPs | Gene Info |
| Hs.715525 | TXNIP | Thioredoxin interacting protein | CGAP-C-2412885 CGAP-C-2412887 CGAP-C-2412888 CGAP-C-2412890 CGAP-C-2412899 |
SNPs | Gene Info |
| Hs.591456 | POLR3GL | Polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like | CGAP-C-2467540 |
SNPs | Gene Info |
| Hs.470553 | METTL5 | Methyltransferase like 5 | CGAP-C-2437571 CGAP-C-2437574 |
SNPs | Gene Info |
| Hs.568247 | LOC727893 | Similar to phosphodiesterase 4D interacting protein (myomegalin) | CGAP-C-2467084 |
SNPs | Gene Info |
| Hs.654651 | PDE4DIP | Phosphodiesterase 4D interacting protein | CGAP-C-2391732 CGAP-C-2391733 CGAP-C-2391738 CGAP-C-2391739 CGAP-C-2391740 CGAP-C-2391743 CGAP-C-2391745 CGAP-C-2391748 CGAP-C-2391749 |
SNPs | Gene Info |
| Hs.562154 | ACP6 | Acid phosphatase 6, lysophosphatidic | CGAP-C-2447175 CGAP-C-2447176 CGAP-C-2447178 CGAP-C-2447180 |
SNPs | Gene Info |
| Hs.191164 | CHD1L | Chromodomain helicase DNA binding protein 1-like | CGAP-C-2418731 CGAP-C-2418733 |
SNPs | Gene Info |
| Hs.447968 | GJA5 | Gap junction protein, alpha 5, 40kDa | CGAP-C-2478258 |
SNPs | Gene Info |
| Hs.89603 | MUC1 | Mucin 1, cell surface associated | CGAP-C-2413887 |
SNPs | Gene Info |
| Hs.50732 | PRKAB2 | Protein kinase, AMP-activated, beta 2 non-catalytic subunit | CGAP-C-2476315 |
SNPs | Gene Info |
| Hs.108408 | APH1A | Anterior pharynx defective 1 homolog A (C. elegans) | CGAP-C-2400870 |
SNPs | Gene Info |
| Hs.530479 | PMF1 | Polyamine-modulated factor 1 | CGAP-C-2485369 CGAP-C-2485370 CGAP-C-2485375 |
SNPs | Gene Info |
| Hs.533597 | PYGO2 | Pygopus homolog 2 (Drosophila) | CGAP-C-2460092 CGAP-C-2460093 CGAP-C-2460095 |
SNPs | Gene Info |
| Hs.715539 | ADAMTSL4 | ADAMTS-like 4 | CGAP-C-2441497 |
SNPs | Gene Info |
| Hs.81071 | ECM1 | Extracellular matrix protein 1 | CGAP-C-2481355 |
SNPs | Gene Info |
| Hs.112405 | S100A9 | S100 calcium binding protein A9 | CGAP-C-2429770 CGAP-C-2429774 CGAP-C-2429775 |
SNPs | Gene Info |
| Hs.370168 | CRLF3 | Cytokine receptor-like factor 3 | CGAP-C-2478920 CGAP-C-2478922 CGAP-C-2478923 CGAP-C-2478924 |
SNPs | Gene Info |
| Hs.713518 | MCL1 | Myeloid cell leukemia sequence 1 (BCL2-related) | CGAP-C-2424698 CGAP-C-2424699 CGAP-C-2424700 CGAP-C-2424704 |
SNPs | Gene Info |
| Comments, questions and suggestions to: Bob Clifford ( clifforr@mail.nih.gov ) |