BLASTP 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= SPy_0104 putative competence protein
(142 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
6,515,104 sequences; 2,222,278,849 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_663885.1| putative competence protein [Streptococcus... 290 3e-77
ref|NP_268501.1| putative competence protein [Streptococcus... 289 4e-77
ref|YP_059455.1| ComG operon protein 4 [Streptococcus pyoge... 288 1e-76
ref|YP_281453.1| comG operon protein 4 [Streptococcus pyoge... 225 6e-58
ref|ZP_02919993.1| hypothetical protein STRINF_00854 [Strep... 120 3e-26
ref|NP_722282.1| putative competence protein ComYD [Strepto... 116 5e-25
ref|ZP_00789588.1| competence protein CglD [Streptococcus a... 107 2e-22
ref|YP_001034199.1| Competence protein ComYD, putative [Str... 107 3e-22
ref|YP_001451187.1| ComYD [Streptococcus gordonii str. Chal... 107 3e-22
ref|NP_734632.1| hypothetical protein gbs0162 [Streptococcu... 106 5e-22
ref|ZP_00787336.1| competence protein CglD [Streptococcus a... 106 6e-22
ref|ZP_01821055.1| competence protein CglD [Streptococcus p... 105 8e-22
ref|YP_817267.1| competence protein CglD [Streptococcus pne... 105 1e-21
ref|NP_359452.1| Competence protein [Streptococcus pneumoni... 105 1e-21
ref|ZP_02718773.1| competence protein CglD [Streptococcus p... 104 2e-21
ref|YP_001836734.1| competence protein CglD [Streptococcus ... 104 2e-21
ref|ZP_01828633.1| competence protein CglD [Streptococcus p... 104 2e-21
ref|ZP_02716615.1| competence protein CglD [Streptococcus p... 103 2e-21
ref|ZP_02709076.1| competence protein CglD [Streptococcus p... 103 3e-21
ref|ZP_01819041.1| competence protein CglD [Streptococcus p... 103 3e-21
ref|NP_346474.1| competence protein CglD [Streptococcus pne... 101 1e-20
ref|ZP_01833052.1| competence protein CglD [Streptococcus p... 101 2e-20
ref|YP_140276.1| competence protein [Streptococcus thermoph... 100 5e-20
ref|YP_001695401.1| competence protein CglD [Streptococcus ... 96 7e-19
ref|ZP_01821885.1| competence protein CglD [Streptococcus p... 93 7e-18
ref|YP_001197499.1| Type II secretory pathway, pseudopilin ... 92 1e-17
ref|YP_821160.1| Type II secretory pathway/competence, pseu... 84 4e-15
ref|YP_328897.1| competence protein, putative [Streptococcu... 83 5e-15
gb|AAC45313.1| ComYD [Streptococcus gordonii] 69 1e-10
ref|NP_268277.1| ComGD [Lactococcus lactis subsp. lactis Il... 66 8e-10
ref|YP_001033647.1| putative competence protein ComGD [Lact... 60 3e-08
ref|ZP_00875039.1| competence protein [Streptococcus suis 8... 56 9e-07
ref|YP_001195634.1| transcriptional regulator, LysR family ... 35 1.9
ref|ZP_02535566.1| general secretion pathway protein J [End... 35 2.0
ref|ZP_00602823.1| putative competence protein ComYD [Enter... 34 2.6
ref|YP_432965.1| Rhs family protein [Hahella chejuensis KCT... 33 5.3
ref|YP_535320.1| hypothetical protein LSL_0427 [Lactobacill... 33 7.0
emb|CAL53476.1| unnamed protein product [Ostreococcus tauri] 33 7.8
ref|ZP_01070763.1| transformation system protein [Campyloba... 33 7.8
ref|YP_001323693.1| Phosphoribosylformylglycinamidine synth... 32 9.4
>ref|NP_663885.1| putative competence protein [Streptococcus pyogenes MGAS315]
ref|NP_801344.1| putative competence protein [Streptococcus pyogenes SSI-1]
gb|AAM78688.1| putative competence protein [Streptococcus pyogenes MGAS315]
dbj|BAC63177.1| putative competence protein [Streptococcus pyogenes SSI-1]
Length = 147
Score = 290 bits (741), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MKKPVLAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKL 60
MKKPVLAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKL
Sbjct: 6 MKKPVLAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKL 65
Query: 61 AILQQKQRVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRR 120
AILQQKQRVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRR
Sbjct: 66 AILQQKQRVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRR 125
Query: 121 FKYQFYLGSGNYQKTSQSLHSP 142
FKYQFYLGSGNYQKTSQSLHSP
Sbjct: 126 FKYQFYLGSGNYQKTSQSLHSP 147
>ref|NP_268501.1| putative competence protein [Streptococcus pyogenes M1 GAS]
ref|NP_606419.1| putative competence protein [Streptococcus pyogenes MGAS8232]
ref|ZP_00366539.1| COG2165: Type II secretory pathway, pseudopilin PulG [Streptococcus
pyogenes M49 591]
ref|YP_279556.1| ComG operon protein 4 [Streptococcus pyogenes MGAS6180]
ref|YP_595822.1| ComG operon protein 4 [Streptococcus pyogenes MGAS9429]
ref|YP_597700.1| ComG operon protein 4 [Streptococcus pyogenes MGAS10270]
ref|YP_599688.1| ComG operon protein 4 [Streptococcus pyogenes MGAS2096]
ref|YP_601590.1| ComG operon protein 4 [Streptococcus pyogenes MGAS10750]
ref|YP_001127682.1| putative competence protein [Streptococcus pyogenes str. Manfredo]
gb|AAK33222.1| putative competence protein [Streptococcus pyogenes M1 GAS]
gb|AAL96918.1| putative competence protein [Streptococcus pyogenes MGAS8232]
gb|AAX71201.1| ComG operon protein 4 [Streptococcus pyogenes MGAS6180]
gb|ABF31278.1| ComG operon protein 4 [Streptococcus pyogenes MGAS9429]
gb|ABF33156.1| ComG operon protein 4 [Streptococcus pyogenes MGAS10270]
gb|ABF35144.1| ComG operon protein 4 [Streptococcus pyogenes MGAS2096]
gb|ABF37046.1| ComG operon protein 4 [Streptococcus pyogenes MGAS10750]
emb|CAM29429.1| putative competence protein [Streptococcus pyogenes str. Manfredo]
Length = 142
Score = 289 bits (739), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MKKPVLAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKL 60
MKKPVLAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKL
Sbjct: 1 MKKPVLAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKL 60
Query: 61 AILQQKQRVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRR 120
AILQQKQRVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRR
Sbjct: 61 AILQQKQRVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRR 120
Query: 121 FKYQFYLGSGNYQKTSQSLHSP 142
FKYQFYLGSGNYQKTSQSLHSP
Sbjct: 121 FKYQFYLGSGNYQKTSQSLHSP 142
>ref|YP_059455.1| ComG operon protein 4 [Streptococcus pyogenes MGAS10394]
gb|AAT86272.1| ComG operon protein 4 [Streptococcus pyogenes MGAS10394]
Length = 142
Score = 288 bits (736), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 141/142 (99%), Positives = 142/142 (100%)
Query: 1 MKKPVLAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKL 60
MKKPVLAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKL
Sbjct: 1 MKKPVLAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKL 60
Query: 61 AILQQKQRVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRR 120
AILQQKQRVLDISSTKIVTEGN+LTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRR
Sbjct: 61 AILQQKQRVLDISSTKIVTEGNNLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRR 120
Query: 121 FKYQFYLGSGNYQKTSQSLHSP 142
FKYQFYLGSGNYQKTSQSLHSP
Sbjct: 121 FKYQFYLGSGNYQKTSQSLHSP 142
>ref|YP_281453.1| comG operon protein 4 [Streptococcus pyogenes MGAS5005]
gb|AAZ50708.1| comG operon protein 4 [Streptococcus pyogenes MGAS5005]
Length = 109
Score = 225 bits (574), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 108/109 (99%), Positives = 109/109 (100%)
Query: 34 VTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQRVLDISSTKIVTEGNSLTVPKSITVN 93
+TKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQRVLDISSTKIVTEGNSLTVPKSITVN
Sbjct: 1 MTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQRVLDISSTKIVTEGNSLTVPKSITVN 60
Query: 94 HPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYLGSGNYQKTSQSLHSP 142
HPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYLGSGNYQKTSQSLHSP
Sbjct: 61 HPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYLGSGNYQKTSQSLHSP 109
>ref|ZP_02919993.1| hypothetical protein STRINF_00854 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gb|EDT48001.1| hypothetical protein STRINF_00854 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 143
Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 95/143 (66%), Gaps = 1/143 (0%)
Query: 1 MKKPVLAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKL 60
MK ++AFTL+E+LL+L + F+++ LS V +Q V+E LFF FE+LYR QKL
Sbjct: 1 MKLKNKTLRAFTLIESLLTLVISCFMVIMLSGSVNHIFQSVDETLFFLSFENLYRDTQKL 60
Query: 61 AILQQKQRVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRR 120
A ++Q+ + L IS I S+ +PK+++V+ Y+LV D+ GGN SLAKI F +
Sbjct: 61 ASIKQESQTLQISQDAISNGITSVKIPKTVSVDKNYQLVFDKDGGNSSLAKIQFHTETQA 120
Query: 121 FKYQFYLGSGNYQKT-SQSLHSP 142
YQ Y+GSGNY+KT ++S+++P
Sbjct: 121 IDYQLYIGSGNYKKTETKSVYTP 143
>ref|NP_722282.1| putative competence protein ComYD [Streptococcus mutans UA159]
gb|AAN59588.1|AE015021_9 putative competence protein ComYD [Streptococcus mutans UA159]
Length = 143
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 84/129 (65%), Gaps = 1/129 (0%)
Query: 8 IKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQ 67
IKAFTL+E+L++L++ SF+IL S +T+++ KVEE LFF FEHLYR QKL++ Q++
Sbjct: 13 IKAFTLIESLVTLAITSFLILSFSGSITQTFAKVEERLFFLSFEHLYRDTQKLSVYQRQD 72
Query: 68 RVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTD-RRFKYQFY 126
L + S I L +PK + + L DQ GGN SL K++F +D +R YQ Y
Sbjct: 73 MTLILKSEYISNGVEVLKIPKDVKLERNKTLHFDQAGGNSSLEKLVFQTSDEKRVTYQLY 132
Query: 127 LGSGNYQKT 135
+GSG Y+KT
Sbjct: 133 IGSGQYKKT 141
>ref|ZP_00789588.1| competence protein CglD [Streptococcus agalactiae 515]
gb|EAO71683.1| competence protein CglD [Streptococcus agalactiae 515]
Length = 142
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 78/127 (61%)
Query: 8 IKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQ 67
+KAFTLLE+L+ LSV++F+ L S +++VEE +FF FEHLYR QKL+ QK+
Sbjct: 13 VKAFTLLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKK 72
Query: 68 RVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYL 127
+ L IS + L +PK++ V L D GGN SLAKI F+ + YQ Y+
Sbjct: 73 QTLTISHNYLENTYERLYLPKTVKVVKSDTLAFDANGGNSSLAKIQFECYRKTVTYQLYI 132
Query: 128 GSGNYQK 134
GSGNY+K
Sbjct: 133 GSGNYRK 139
>ref|YP_001034199.1| Competence protein ComYD, putative [Streptococcus sanguinis SK36]
gb|ABN43649.1| Competence protein ComYD, putative [Streptococcus sanguinis SK36]
Length = 140
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 82/133 (61%)
Query: 6 LAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQ 65
L IKAFTLLE+LL L V+SF++LGLS V + +V+E LFF FE LY+ Q+L++
Sbjct: 7 LPIKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQRLSLAGH 66
Query: 66 KQRVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQF 125
++ L IS +I L P+++ + + D+ GGN SL KIIF DR YQ
Sbjct: 67 EKLSLKISGRQISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLGKIIFQTEDRTVVYQL 126
Query: 126 YLGSGNYQKTSQS 138
Y+G+G ++KT+ S
Sbjct: 127 YMGNGKFKKTTAS 139
>ref|YP_001451187.1| ComYD [Streptococcus gordonii str. Challis substr. CH1]
gb|ABV09498.1| ComYD [Streptococcus gordonii str. Challis substr. CH1]
Length = 142
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 83/131 (63%)
Query: 6 LAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQ 65
L IKAFT+LE+LL L + SFI+L LS V ++++++ +FF FEH Y+ QKL++ Q
Sbjct: 11 LPIKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQESQKLSVSSQ 70
Query: 66 KQRVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQF 125
++ VL+ISS +I L +PK I ++ D+ GGN SL+K+ F + YQ
Sbjct: 71 RKLVLEISSQEISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQFQTKEGLVTYQL 130
Query: 126 YLGSGNYQKTS 136
Y+G+G ++KT+
Sbjct: 131 YIGNGKFKKTT 141
>ref|NP_734632.1| hypothetical protein gbs0162 [Streptococcus agalactiae NEM316]
emb|CAD45807.1| Unknown [Streptococcus agalactiae NEM316]
Length = 137
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 78/127 (61%)
Query: 8 IKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQ 67
+KAFT+LE+L+ LSV++F+ L S +++VEE +FF FEHLYR QKL+ QK+
Sbjct: 8 VKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKK 67
Query: 68 RVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYL 127
+ L IS + L +PK++ V L D GGN SLAKI F+ + YQ Y+
Sbjct: 68 QTLTISHNYLENTYERLYLPKTVKVVKSDTLAFDANGGNSSLAKIQFECYRKTVTYQLYI 127
Query: 128 GSGNYQK 134
GSGNY+K
Sbjct: 128 GSGNYRK 134
>ref|ZP_00787336.1| competence protein CglD [Streptococcus agalactiae CJB111]
gb|EAO73990.1| competence protein CglD [Streptococcus agalactiae CJB111]
Length = 137
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 78/127 (61%)
Query: 8 IKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQ 67
+KAFT+LE+L+ LSV++F+ L S +++VEE +FF FEHLYR QKL+ QK+
Sbjct: 8 VKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKK 67
Query: 68 RVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYL 127
+ L IS + L +PK++ V L D GGN SLAKI F+ + YQ Y+
Sbjct: 68 QTLTISHNYLENTYERLYLPKTVKVVKSDTLAFDTNGGNSSLAKIQFECYRKTVTYQLYI 127
Query: 128 GSGNYQK 134
GSGNY+K
Sbjct: 128 GSGNYRK 134
>ref|ZP_01821055.1| competence protein CglD [Streptococcus pneumoniae SP6-BS73]
ref|ZP_01831396.1| competence protein CglD [Streptococcus pneumoniae SP18-BS74]
gb|EDK67623.1| competence protein CglD [Streptococcus pneumoniae SP18-BS74]
gb|EDK75945.1| competence protein CglD [Streptococcus pneumoniae SP6-BS73]
Length = 134
Score = 105 bits (263), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 75/127 (59%)
Query: 8 IKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQ 67
IKAFT+LE+LL+LS++S + LGLS V ++ VEE +FF FE LYR QK ++ Q++
Sbjct: 2 IKAFTMLESLLALSLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQK 61
Query: 68 RVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYL 127
L++ I L VPK I + D+ GGN SLAK+ F + +YQ YL
Sbjct: 62 TSLNLDGQTISNGSQKLPVPKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYL 121
Query: 128 GSGNYQK 134
G+G ++
Sbjct: 122 GNGKIKR 128
>ref|YP_817267.1| competence protein CglD [Streptococcus pneumoniae D39]
ref|ZP_01836122.1| competence protein CglD [Streptococcus pneumoniae SP23-BS72]
gb|AAC23740.1| competence protein [Streptococcus pneumoniae]
gb|ABJ55112.1| competence protein CglD [Streptococcus pneumoniae D39]
gb|EDK80709.1| competence protein CglD [Streptococcus pneumoniae SP23-BS72]
Length = 134
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 76/131 (58%)
Query: 8 IKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQ 67
IKAFT+LE+LL L ++S + LGLS V ++ VEE +FF FE LYR QK ++ Q++
Sbjct: 2 IKAFTMLESLLVLGLVSILALGLSGSVQSTFSAVEEQIFFMEFEELYRETQKRSVASQQK 61
Query: 68 RVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYL 127
L++ I LTVPK I + D+ GGN SLAK+ F + +YQ YL
Sbjct: 62 TSLNLDGQMISNGSQKLTVPKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYL 121
Query: 128 GSGNYQKTSQS 138
G+G ++ ++
Sbjct: 122 GNGKIKRIKET 132
>ref|NP_359452.1| Competence protein [Streptococcus pneumoniae R6]
gb|AAL00663.1| Competence protein [Streptococcus pneumoniae R6]
Length = 160
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 76/131 (58%)
Query: 8 IKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQ 67
IKAFT+LE+LL L ++S + LGLS V ++ VEE +FF FE LYR QK ++ Q++
Sbjct: 28 IKAFTMLESLLVLGLVSILALGLSGSVQSTFSAVEEQIFFMEFEELYRETQKRSVASQQK 87
Query: 68 RVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYL 127
L++ I LTVPK I + D+ GGN SLAK+ F + +YQ YL
Sbjct: 88 TSLNLDGQMISNGSQKLTVPKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYL 147
Query: 128 GSGNYQKTSQS 138
G+G ++ ++
Sbjct: 148 GNGKIKRIKET 158
>ref|ZP_02718773.1| competence protein CglD [Streptococcus pneumoniae CDC3059-06]
gb|EDT95960.1| competence protein CglD [Streptococcus pneumoniae CDC3059-06]
Length = 134
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 75/127 (59%)
Query: 8 IKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQ 67
IKAFT+LE+LL+LS++S + LGLS V ++ VEE +FF FE LYR QK ++ Q++
Sbjct: 2 IKAFTMLESLLALSLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQK 61
Query: 68 RVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYL 127
L++ + L VPK I + D+ GGN SLAK+ F + +YQ YL
Sbjct: 62 TSLNLDGQTLSNGSQKLPVPKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYL 121
Query: 128 GSGNYQK 134
G+G ++
Sbjct: 122 GNGKIKR 128
>ref|YP_001836734.1| competence protein CglD [Streptococcus pneumoniae CGSP14]
gb|ACB91269.1| competence protein CglD [Streptococcus pneumoniae CGSP14]
Length = 142
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 74/127 (58%)
Query: 8 IKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQ 67
IKAFT+LE+LL L ++S + LGLS V ++ VEE +FF FE LYR QK ++ Q++
Sbjct: 10 IKAFTMLESLLVLGLVSILALGLSSSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQK 69
Query: 68 RVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYL 127
L++ + LTVPK I + D+ GGN SLAK+ F + +YQ YL
Sbjct: 70 TSLNLDGQTLSNGSQKLTVPKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYL 129
Query: 128 GSGNYQK 134
G+G ++
Sbjct: 130 GNGKIKR 136
>ref|ZP_01828633.1| competence protein CglD [Streptococcus pneumoniae SP14-BS69]
gb|EDK65142.1| competence protein CglD [Streptococcus pneumoniae SP14-BS69]
Length = 134
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 74/127 (58%)
Query: 8 IKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQ 67
IKAFT+LE+LL L ++S + LGLS V ++ VEE +FF FE LYR QK ++ Q++
Sbjct: 2 IKAFTMLESLLVLGLVSILALGLSSSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQK 61
Query: 68 RVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYL 127
L++ + LTVPK I + D+ GGN SLAK+ F + +YQ YL
Sbjct: 62 TSLNLDGQTLSNGSQKLTVPKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYL 121
Query: 128 GSGNYQK 134
G+G ++
Sbjct: 122 GNGKIKR 128
>ref|ZP_02716615.1| competence protein CglD [Streptococcus pneumoniae CDC0288-04]
gb|EDT93904.1| competence protein CglD [Streptococcus pneumoniae CDC0288-04]
Length = 134
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 74/127 (58%)
Query: 8 IKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQ 67
IKAFT+LE+LL L ++S + LGLS V ++ VEE +FF FE LYR QK ++ Q++
Sbjct: 2 IKAFTMLESLLVLGLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQK 61
Query: 68 RVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYL 127
L++ + LTVPK I + D+ GGN SLAK+ F + +YQ YL
Sbjct: 62 TSLNLDGQTLSNGSQKLTVPKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYL 121
Query: 128 GSGNYQK 134
G+G ++
Sbjct: 122 GNGKIKR 128
>ref|ZP_02709076.1| competence protein CglD [Streptococcus pneumoniae CDC1873-00]
gb|EDT50650.1| competence protein CglD [Streptococcus pneumoniae CDC1873-00]
Length = 134
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 76/131 (58%)
Query: 8 IKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQ 67
IKAFT+LE+LL L ++S + LGLS V ++ VEE +FF FE LYR QK ++ Q++
Sbjct: 2 IKAFTMLESLLVLGLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQK 61
Query: 68 RVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYL 127
L++ + LTVPK I + D+ GGN SLAK+ F + +YQ YL
Sbjct: 62 TSLNLDGQTLSNGSQKLTVPKGIQAPSDQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYL 121
Query: 128 GSGNYQKTSQS 138
G+G ++ ++
Sbjct: 122 GNGKIKRIKET 132
>ref|ZP_01819041.1| competence protein CglD [Streptococcus pneumoniae SP3-BS71]
ref|ZP_02711531.1| competence protein CglD [Streptococcus pneumoniae CDC1087-00]
gb|EDK73086.1| competence protein CglD [Streptococcus pneumoniae SP3-BS71]
gb|EDT90593.1| competence protein CglD [Streptococcus pneumoniae CDC1087-00]
Length = 134
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 76/131 (58%)
Query: 8 IKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQ 67
IKAFT+LE+LL L ++S + LGLS V ++ VEE +FF FE LYR QK ++ Q++
Sbjct: 2 IKAFTMLESLLVLGLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQK 61
Query: 68 RVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYL 127
L++ + LTVPK I + D+ GGN SLAK+ F + +YQ YL
Sbjct: 62 TNLNLDGQTLSNGSQKLTVPKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYL 121
Query: 128 GSGNYQKTSQS 138
G+G ++ ++
Sbjct: 122 GNGKIKRIKET 132
>ref|NP_346474.1| competence protein CglD [Streptococcus pneumoniae TIGR4]
ref|ZP_01409371.1| hypothetical protein SpneT_02000147 [Streptococcus pneumoniae
TIGR4]
ref|ZP_01826252.1| competence protein CglD [Streptococcus pneumoniae SP11-BS70]
ref|ZP_02722836.1| competence protein CglD [Streptococcus pneumoniae MLV-016]
gb|AAK76114.1| competence protein CglD [Streptococcus pneumoniae TIGR4]
gb|EDK62426.1| competence protein CglD [Streptococcus pneumoniae SP11-BS70]
gb|EDT97901.1| competence protein CglD [Streptococcus pneumoniae MLV-016]
Length = 134
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 75/131 (57%)
Query: 8 IKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQ 67
IKAFT+LE+LL L ++S + LGLS V ++ VEE +FF FE LYR QK ++ Q++
Sbjct: 2 IKAFTMLESLLVLGLVSILALGLSGSVQSTFSAVEEQIFFMEFEELYRETQKRSVASQQK 61
Query: 68 RVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYL 127
L++ + L VPK I + D+ GGN SLAK+ F + +YQ YL
Sbjct: 62 TSLNLDGQTLSNGSQKLPVPKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYL 121
Query: 128 GSGNYQKTSQS 138
G+G ++ ++
Sbjct: 122 GNGKIKRIKET 132
>ref|ZP_01833052.1| competence protein CglD [Streptococcus pneumoniae SP19-BS75]
gb|EDK70792.1| competence protein CglD [Streptococcus pneumoniae SP19-BS75]
Length = 134
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 72/127 (56%)
Query: 8 IKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQ 67
IKAFT+LE+LL L ++S + LGLS V ++ VEE +FF FE LYR QK ++ Q++
Sbjct: 2 IKAFTMLESLLVLGLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQK 61
Query: 68 RVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYL 127
L+ I L VPK I + D+ GGN SLAK+ F + +YQ YL
Sbjct: 62 TSLNSDGQTISNGSQKLPVPKGIQAPSDQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYL 121
Query: 128 GSGNYQK 134
G+G ++
Sbjct: 122 GNGKIKR 128
>ref|YP_140276.1| competence protein [Streptococcus thermophilus LMG 18311]
ref|YP_142191.1| competence protein [Streptococcus thermophilus CNRZ1066]
gb|AAV61461.1| competence protein [Streptococcus thermophilus LMG 18311]
gb|AAV63376.1| competence protein [Streptococcus thermophilus CNRZ1066]
Length = 142
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 78/128 (60%)
Query: 8 IKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQ 67
I+AFTLLE+L++L+V+ F+ L LS VT +Q+VE +LF+ FE+LYR Q+LA +
Sbjct: 13 IRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSN 72
Query: 68 RVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYL 127
L ++ K+ +SL +PKSI ++ LV D GGN SL KI F Y +
Sbjct: 73 VELQLTKDKVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNM 132
Query: 128 GSGNYQKT 135
GSG Y+KT
Sbjct: 133 GSGKYKKT 140
>ref|YP_001695401.1| competence protein CglD [Streptococcus pneumoniae Hungary19A-6]
gb|ACA35876.1| competence protein CglD [Streptococcus pneumoniae Hungary19A-6]
Length = 128
Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 68/122 (55%)
Query: 13 LLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQRVLDI 72
+LE+LL L ++S + LGLS V ++ VEE +FF FE LYR QK ++ Q++ L I
Sbjct: 1 MLESLLVLGLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTSLSI 60
Query: 73 SSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYLGSGNY 132
I LTVPK I + D+ GGN SLAK+ F + +YQ YLG+G
Sbjct: 61 DGQTISNGSQKLTVPKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKI 120
Query: 133 QK 134
++
Sbjct: 121 KR 122
>ref|ZP_01821885.1| competence protein CglD [Streptococcus pneumoniae SP9-BS68]
ref|ZP_02714143.1| competence protein CglD [Streptococcus pneumoniae SP195]
gb|EDK80171.1| competence protein CglD [Streptococcus pneumoniae SP9-BS68]
gb|EDT92210.1| competence protein CglD [Streptococcus pneumoniae SP195]
Length = 128
Score = 92.8 bits (229), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 70/126 (55%)
Query: 13 LLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQRVLDI 72
+LE+LL L ++S + LGLS V ++ VEE +FF FE LYR QK ++ Q++ L++
Sbjct: 1 MLESLLVLGLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTSLNL 60
Query: 73 SSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYLGSGNY 132
I L VPK I + D+ GGN SLAK+ F + +YQ YLG+G
Sbjct: 61 DGQMISNGSQKLPVPKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKI 120
Query: 133 QKTSQS 138
++ ++
Sbjct: 121 KRIKET 126
>ref|YP_001197499.1| Type II secretory pathway, pseudopilin PulG [Streptococcus suis
05ZYH33]
ref|YP_001199691.1| Type II secretory pathway, pseudopilin PulG [Streptococcus suis
98HAH33]
gb|ABP89099.1| Type II secretory pathway, pseudopilin PulG [Streptococcus suis
05ZYH33]
gb|ABP91291.1| Type II secretory pathway, pseudopilin PulG [Streptococcus suis
98HAH33]
Length = 135
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 76/129 (58%)
Query: 9 KAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQR 68
KAFTL E+LL+L V+SF+ + LS V ++ V+E +F FE +Y+ QKLA K+
Sbjct: 7 KAFTLFESLLTLLVVSFLAVSLSGTVQTVFRSVQEEIFLWEFEAIYKDSQKLAASSHKKV 66
Query: 69 VLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYLG 128
L I ++ ++ VP+++ V + ++ GGN SL KI F ++ + YQ Y+G
Sbjct: 67 NLAIGGQEVTNGYQAVEVPRNVEVLEEKTIQFEEDGGNSSLTKIRFHLSQKIVTYQLYIG 126
Query: 129 SGNYQKTSQ 137
SG Y+KT +
Sbjct: 127 SGRYKKTEE 135
>ref|YP_821160.1| Type II secretory pathway/competence, pseudopilin PulG
[Streptococcus thermophilus LMD-9]
gb|ABJ66964.1| Type II secretory pathway/competence, pseudopilin PulG
[Streptococcus thermophilus LMD-9]
Length = 120
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 18 LSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQRVLDISSTKI 77
++L+V+ F+ L LS VT +Q+VE +LF+ FE+LYR Q+LA + L ++ K+
Sbjct: 1 MTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKDKV 60
Query: 78 VTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYLGSGNYQKT 135
+SL +PKSI ++ LV D GGN SL KI F Y +GSG Y+KT
Sbjct: 61 SNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKT 118
>ref|YP_328897.1| competence protein, putative [Streptococcus agalactiae A909]
gb|ABA45571.1| competence protein, putative [Streptococcus agalactiae A909]
Length = 112
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 61/109 (55%)
Query: 26 IILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQRVLDISSTKIVTEGNSLT 85
+ L S +++VEE +FF FEHLYR QKL+ QK++ L IS + L
Sbjct: 1 MTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENTYERLY 60
Query: 86 VPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYLGSGNYQK 134
+PK++ V L D GGN SLAKI F+ + YQ Y+GSGNY+K
Sbjct: 61 LPKTVKVVKSDTLAFDTNGGNSSLAKIQFECYRKTVTYQLYIGSGNYRK 109
>gb|AAC45313.1| ComYD [Streptococcus gordonii]
Length = 89
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 52/72 (72%)
Query: 6 LAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQ 65
L IKAFT+LE+LL L + SFI+L LS V ++++++ +FF FEH Y+ QKL++ Q
Sbjct: 11 LPIKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQESQKLSVSSQ 70
Query: 66 KQRVLDISSTKI 77
++ VL+ISS +I
Sbjct: 71 RKLVLEISSQEI 82
>ref|NP_268277.1| ComGD [Lactococcus lactis subsp. lactis Il1403]
gb|AAK06218.1|AE006440_4 competence protein ComGD [Lactococcus lactis subsp. lactis Il1403]
Length = 143
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 76/136 (55%), Gaps = 3/136 (2%)
Query: 1 MKKPVLAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKL 60
MK +L KAFTLLE+LL L ++SFI S+ + ++ + LF FE+ Y+ Q+
Sbjct: 6 MKNEILMTKAFTLLESLLVLLIISFITTLFSLEIIQTIHLFKGELFVLQFENFYKRSQED 65
Query: 61 AILQQKQRVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMT-DR 119
A L QK L + +++ E S+T+PK + V + + D G N SL K+ + ++
Sbjct: 66 AALLQKSESLVAKNQELICEDRSITIPKEVAVKD-FTVKFDDKGENSSLQKLTISLPYEK 124
Query: 120 RF-KYQFYLGSGNYQK 134
+F YQ +GSG ++K
Sbjct: 125 KFITYQLEIGSGKFKK 140
>ref|YP_001033647.1| putative competence protein ComGD [Lactococcus lactis subsp.
cremoris MG1363]
emb|CAL98969.1| putative competence protein ComGD [Lactococcus lactis subsp.
cremoris MG1363]
Length = 147
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 3/136 (2%)
Query: 1 MKKPVLAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKL 60
M + I+AFTLLE+LL L ++SFI L S +T++ + LF FE+LY+ Q+
Sbjct: 10 MNSAISMIRAFTLLESLLVLLIVSFITLFFSAELTQTVHLFKGELFVLQFENLYKISQEN 69
Query: 61 AILQQKQRVLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKI--IFDMTD 118
A LQ L+ + K++ E + +PK + + + + D+ G N SL KI
Sbjct: 70 AALQSSSENLESKNGKLIYENKEIDIPKEVEM-AEFLIKFDEKGENSSLQKIKVYLPYEK 128
Query: 119 RRFKYQFYLGSGNYQK 134
+ YQ +GSG Y+K
Sbjct: 129 KTILYQMEMGSGKYKK 144
>ref|ZP_00875039.1| competence protein [Streptococcus suis 89/1591]
gb|EAP40814.1| competence protein [Streptococcus suis 89/1591]
Length = 102
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%)
Query: 9 KAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQR 68
KAFTL E+LL+L V+SF+ + LS V ++ V+E +F FE +Y+ QKLA ++
Sbjct: 7 KAFTLFESLLTLLVVSFLAVSLSGTVQTVFRSVQEEIFLWEFEAIYKDSQKLAASFHQKV 66
Query: 69 VLDISSTKIVTEGNSLTVPKSITV 92
L I ++ ++ VP++I V
Sbjct: 67 NLAIGGQEVTNGYQAVQVPRNIEV 90
>ref|YP_001195634.1| transcriptional regulator, LysR family [Flavobacterium johnsoniae
UW101]
gb|ABQ06315.1| transcriptional regulator, LysR family [Flavobacterium johnsoniae
UW101]
Length = 287
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 18 LSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQRVLDISSTKI 77
+S S+M I+ +S K K+ + L+ + E L ++ LAI + DI S KI
Sbjct: 101 ISASIMPDILSRISDAFPKLKIKLVQVLYENQQEFLRNYKIDLAITRDINHARDIKSEKI 160
Query: 78 VTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKY 123
T+ ++ VP+ NHPY+ D + + K I TD Y
Sbjct: 161 YTDNLAIVVPE----NHPYQKPEDLTKESLANQKFILPTTDEGSSY 202
>ref|ZP_02535566.1| general secretion pathway protein J [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 124
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 7 AIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQ 65
A++ FTLLE L++++V SF+ + ++ KS +EE +H + L + Q LA+++Q
Sbjct: 9 AVRGFTLLELLIAIAVFSFVSI-IAYGGIKSVLNIEEST-RAHLDRLSKAQLALALIRQ 65
>ref|ZP_00602823.1| putative competence protein ComYD [Enterococcus faecium DO]
gb|EAN10776.1| putative competence protein ComYD [Enterococcus faecium DO]
Length = 164
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 17/104 (16%)
Query: 46 FFSHFEHLYRHQQKLAILQQKQRVLDISST------------KIVTEGNSLTVPKSITVN 93
FF FE QK+AI+ Q Q +S KI E L +P IT+
Sbjct: 60 FFGQFEKRIYSTQKIAIVNQIQTGFYWNSEENQIIFHVPNPDKINWE--VLDIPDEITLK 117
Query: 94 HPYRLVIDQMGGNHSLAK---IIFDMTDRRFKYQFYLGSGNYQK 134
+ GN S K ++ +R YQF +GSG Y K
Sbjct: 118 RHASITFAARTGNESSLKAYQFYWEEKERTITYQFQIGSGRYTK 161
>ref|YP_432965.1| Rhs family protein [Hahella chejuensis KCTC 2396]
gb|ABC28540.1| Rhs family protein [Hahella chejuensis KCTC 2396]
Length = 5497
Score = 33.1 bits (74), Expect = 5.3, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 33 PVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQ------RVLDISSTKIVTEGNSLTV 86
PVTK Y + +L S + Y HQQK + + R + ++ ++ +E +++
Sbjct: 4014 PVTKYYYDGQNNLVASQDANSYLHQQKSGYSNEWKGDTAFYRGQEYAAGQVASEVDAMGA 4073
Query: 87 PKSITVNH--PYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYLGSGNY 132
K+ + RL+ID++G HS I+D +R + + + NY
Sbjct: 4074 KKTYKYDQLGNKRLMIDELGRYHSF---IYDKANRLQEVRQFSSLSNY 4118
>ref|YP_535320.1| hypothetical protein LSL_0427 [Lactobacillus salivarius UCC118]
gb|ABD99237.1| Hypothetical protein LSL_0427 [Lactobacillus salivarius UCC118]
Length = 140
Score = 32.7 bits (73), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 20/143 (13%)
Query: 10 AFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQ-R 68
+TLLE ++ L + +IL P+ ++Q EE F +FE + +I ++K
Sbjct: 3 GYTLLEMIIVLGIFMVLILLAYRPIKITWQNYEERQFIKNFERKWNQSTIKSIQEEKHTN 62
Query: 69 VLDISSTKIVTEGNSLTVPKSITVNHPYRLVIDQMGGNHSLAKI------------IFDM 116
V +E N ++P M G+ ++ KI IF
Sbjct: 63 VYFYHDLVRFSEYNKDRTTNDYEFSYP-----STMHGDTNIVKISDNGSVTPKTIKIFSS 117
Query: 117 TDRRFKYQFYLGSGN--YQKTSQ 137
RR+ + F +G G Y KT Q
Sbjct: 118 LGRRYVFVFQMGYGAKYYVKTYQ 140
>emb|CAL53476.1| unnamed protein product [Ostreococcus tauri]
Length = 1068
Score = 32.7 bits (73), Expect = 7.8, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 12 TLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQ---QKLAILQQ 65
T L+T++SL + +F+I+ L P+TK K+ +F + H+ +K A++Q+
Sbjct: 327 TFLDTVMSLKMKNFLIIALDEPLTKRLDKLGVSYYFHADPVMGNHKVSAKKFALIQE 383
>ref|ZP_01070763.1| transformation system protein [Campylobacter jejuni subsp. jejuni
HB93-13]
ref|YP_001000755.1| transformation system protein [Campylobacter jejuni subsp. jejuni
81-176]
ref|ZP_02271433.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
81-176]
gb|EAQ60653.1| transformation system protein [Campylobacter jejuni subsp. jejuni
HB93-13]
gb|EAQ72208.1| transformation system protein [Campylobacter jejuni subsp. jejuni
81-176]
Length = 100
Score = 32.7 bits (73), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 9 KAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKL 60
KAF L+E++ +++++S I +G+ T+ Y+ E + FE LY+ Q++L
Sbjct: 3 KAFILIESISAITIISLIFIGIFYYYTQLYKNYEN---LNIFERLYKLQEEL 51
>ref|YP_001323693.1| Phosphoribosylformylglycinamidine synthase [Methanococcus vannielii
SB]
gb|ABR55081.1| Phosphoribosylformylglycinamidine synthase [Methanococcus vannielii
SB]
Length = 993
Score = 32.3 bits (72), Expect = 9.4, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 4 PVLAIKAFTLLETLLSLSVMSFIILGLSVPVT-KSYQKVEEHLFFSHFEHLYRHQQKL-A 61
P L I A ++++ + + + M F ++G S+ + K+Y + F+ F L K+ A
Sbjct: 803 PTLMISALSVIDDVENTNTMEFKLVGDSIYIIGKTYDECGGSEFYHAFSKLGSKSPKVDA 862
Query: 62 ILQQK--QRVLDISSTKI------VTEGNSLTVPKSITVNHPYRLVIDQM---GGNHSLA 110
+K +R+ ++S+ KI VT G L + + VID + SL
Sbjct: 863 KYARKLYERIYELSNNKILSSCASVTLGGILITLSKMAIAGKLGAVIDSAVIPNESLSLE 922
Query: 111 KIIFDMTDRRF 121
KI++ T RF
Sbjct: 923 KILYSETQSRF 933
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: May 10, 2008 4:54 AM
Number of letters in database: 2,222,278,849
Number of sequences in database: 6,515,104
Lambda K H
0.322 0.135 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 6515104
Number of Hits to DB: 545,765,404
Number of extensions: 19293300
Number of successful extensions: 54165
Number of sequences better than 10.0: 61
Number of HSP's gapped: 54913
Number of HSP's successfully gapped: 61
Length of query: 142
Length of database: 2,222,278,849
Length adjustment: 106
Effective length of query: 36
Effective length of database: 1,531,677,825
Effective search space: 55140401700
Effective search space used: 55140401700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 73 (32.7 bits)