files

Summary of the tRNAs found by tRNAscan-se

Amino Acid	Count
Ala	6
Arg	5
Asn	2
Asp	2
Cys	1
Gln	2
Glu	2
Gly	4
His	1
Ile	2
Leu	7
Lys	5
Met	4
Phe	2
Pro	2
Pseudo	0
Ser	4
Thr	4
Trp	1
Tyr	1
Undet	1
Val	3

List of tRNAs found by tRNAscan-se

Amino Acid	Anticodon	Contig	tRNA	tRNA Location	Intron Location	Cove Score	HMM Score
Ala	TGC	Contig1	13	519838 ..519910	0..0	84.64	67.45
Ala	TGC	Contig1	33	2436286..2436214	0..0	84.64	67.45
Ala	TGC	Contig1	36	2400369..2400297	0..0	84.64	67.45
Ala	TGC	Contig1	44	2325933..2325861	0..0	84.64	67.45
Ala	TGC	Contig1	45	2281024..2280952	0..0	84.64	67.45
Ala	TGC	Contig1	47	2041005..2040933	0..0	84.64	67.45
Arg	ACG	Contig1	20	523728 ..523801	0..0	73.18	55.33
Arg	ACG	Contig1	9	275529 ..275602	0..0	73.18	55.33
Arg	CCG	Contig1	28	593652 ..593723	0..0	55.69	31.60
Arg	CCT	Contig1	32	1722108..1722180	0..0	57.61	33.56
Arg	TCT	Contig1	12	466065 ..466138	0..0	79.44	60.13
Asn	GTT	Contig1	35	2432858..2432785	0..0	74.24	48.39
Asn	GTT	Contig1	7	25813 ..25886	0..0	74.24	48.39
Asp	GTC	Contig1	15	523253 ..523325	0..0	72.62	45.01
Asp	GTC	Contig1	49	2037590..2037518	0..0	72.62	45.01
Cys	GCA	Contig1	11	442168 ..442238	0..0	60.16	38.23
Gln	TTG	Contig1	41	2396688..2396617	0..0	64.56	36.74
Gln	TTG	Contig1	55	1701437..1701366	0..0	64.56	36.74
Glu	TTC	Contig1	1	25190 ..25261	0..0	64.66	38.01
Glu	TTC	Contig1	34	2432966..2432895	0..0	64.66	38.01
Gly	GCC	Contig1	19	523618 ..523689	0..0	72.25	43.88
Gly	GCC	Contig1	53	2037225..2037154	0..0	67.57	42.52
Gly	TCC	Contig1	25	524168 ..524238	0..0	66.56	44.70
Gly	TCC	Contig1	5	25530 ..25600	0..0	66.56	44.70
His	GTG	Contig1	40	2396769..2396697	0..0	70.83	48.84
Ile	GAT	Contig1	26	524264 ..524337	0..0	79.86	56.79
Ile	GAT	Contig1	6	25615 ..25688	0..0	79.86	56.79
Leu	AAG	Contig1	58	243019 ..242931	0..0	56.98	29.19
Leu	AAG	Contig1	61	100795 ..100707	0..0	56.98	29.19
Leu	CAA	Contig1	42	2396604..2396521	0..0	61.97	34.20
Leu	CAG	Contig1	43	2354735..2354653	0..0	62.88	31.83
Leu	TAA	Contig1	54	2037119..2037034	0..0	61.13	28.84
Leu	TAG	Contig1	17	523425 ..523506	0..0	66.93	44.40
Leu	TAG	Contig1	51	2037418..2037337	0..0	66.93	44.40
Lys	CTT	Contig1	8	40828 ..40900	0..0	80.33	61.23
Lys	TTT	Contig1	16	523343 ..523415	0..0	83.14	58.94
Lys	TTT	Contig1	29	595838 ..595913	0..0	83.76	59.54
Lys	TTT	Contig1	31	1050871..1050941	0..0	55.65	29.32
Lys	TTT	Contig1	50	2037500..2037428	0..0	83.14	58.94
Met	CAT	Contig1	22	523918 ..523991	0..0	75.67	64.31
Met	CAT	Contig1	23	524004 ..524077	0..0	86.03	60.08
Met	CAT	Contig1	30	701024 ..701097	0..0	72.61	45.70
Met	CAT	Contig1	3	25367 ..25440	0..0	74.76	46.33
Phe	GAA	Contig1	24	524085 ..524157	0..0	75.06	63.13
Phe	GAA	Contig1	4	25446 ..25518	0..0	75.06	63.13
Pro	TGG	Contig1	10	275665 ..275738	0..0	80.16	58.27
Pro	TGG	Contig1	21	523807 ..523880	0..0	80.16	58.27
Ser	CGA	Contig1	60	113861 ..113775	0..0	49.07	29.04
Ser	GCT	Contig1	27	524380 ..524467	0..0	58.10	23.40
Ser	GGA	Contig1	57	267030 ..266943	0..0	54.74	25.20
Ser	TGA	Contig1	2	25267 ..25356	0..0	61.73	28.40
Thr	CGT	Contig1	59	145077 ..145002	0..0	83.33	64.73
Thr	GGT	Contig1	46	2215107..2215035	0..0	70.82	48.87
Thr	TGT	Contig1	18	523520 ..523592	0..0	83.91	58.80
Thr	TGT	Contig1	52	2037323..2037251	0..0	83.91	58.80
Trp	CCA	Contig1	39	2396851..2396781	0..0	53.54	25.77
Tyr	GTA	Contig1	38	2396948..2396868	0..0	65.00	37.59
Undet	???	Contig1	56	1662654..1662594	0..0	30.70	24.12
Val	TAC	Contig1	14	523151 ..523223	0..0	84.84	63.40
Val	TAC	Contig1	37	2397056..2396984	0..0	84.84	63.40
Val	TAC	Contig1	48	2037692..2037620	0..0	84.84	63.40

tRNA Models

Contig1.trna1 (25190-25261)	Length: 72 bp
Type: Glu	Anticodon: TTC at 34-36 (25223-25225)	Score: 64.66
HMM Sc=38.01	Sec struct Sc=26.65
         *    |    *    |    *    |    *    |    *    |    *    |    *    | 
Seq: GGTCCGTTGGTCAAGGGGTtAAGACACCGCCTTTTCACGGCGGTAACACGGGTTCGAATCCCGTACGGACTA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

Contig1.trna2 (25267-25356)	Length: 90 bp
Type: Ser	Anticodon: TGA at 37-39 (25303-25305)	Score: 61.73
HMM Sc=28.40	Sec struct Sc=33.33
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    
Seq: GGAGGATTACCCAAGTCcGGCtgAAGGGAACGGTCTTGAAAACCGTCAGGCGTGTAAAAGCGTGCGTGGGTTCGAATCCCACATCCTCCT
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>.>>.>....<.<<.<..>>>>>.......<<<<<<<<<<<<.

Contig1.trna3 (25367-25440)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (25401-25403)	Score: 74.76
HMM Sc=46.33	Sec struct Sc=28.43
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: CGCGGGATGGAGCAGCTaGGTAGCTCGTCGGGCTCATAACCCGAAGGtCATAGGTTCAAATCCTATTCCCGCAA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<..

Contig1.trna4 (25446-25518)	Length: 73 bp
Type: Phe	Anticodon: GAA at 34-36 (25479-25481)	Score: 75.06
HMM Sc=63.13	Sec struct Sc=11.93
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GGCTCGGTAGCTCAGTTGGTAGAGCAATGGATTGAAGCTCCATGTGtCGGCGGTTCGATTCCGTCTCGCGCCA
Str: >>>.>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<.<<<.

Contig1.trna5 (25530-25600)	Length: 71 bp
Type: Gly	Anticodon: TCC at 33-35 (25562-25564)	Score: 66.56
HMM Sc=44.70	Sec struct Sc=21.86
         *    |    *    |    *    |    *    |    *    |    *    |    *    |
Seq: GCGGATGTAGTTTAATGGTAGAACCCCAGCCTTCCAAGCTGGCTACGCGAGTTCGATTCTCGTCATCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

Contig1.trna6 (25615-25688)	Length: 74 bp
Type: Ile	Anticodon: GAT at 35-37 (25649-25651)	Score: 79.86
HMM Sc=56.79	Sec struct Sc=23.07
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GGGAGTTTAGCTCAGTTGGTtAGAGCACTGTGTTGATAACGCAGGGGtCCCAGGTTCGAATCCTGGAATTCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna7 (25813-25886)	Length: 74 bp
Type: Asn	Anticodon: GTT at 35-37 (25847-25849)	Score: 74.24
HMM Sc=48.39	Sec struct Sc=25.85
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: TGCGGATTAGCTCAGTTGGTaGTAGCGCATGACTGTTAATCATGATGtCGTCAGTTCGAGTCTGACATCCGCAG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna8 (40828-40900)	Length: 73 bp
Type: Lys	Anticodon: CTT at 34-36 (40861-40863)	Score: 80.33
HMM Sc=61.23	Sec struct Sc=19.10
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GGCCCGGTAGCTCAGTTGGTAGAGCAGTAGACTCTTAATCTATGGGtCCAGGGTTCGAGCCCCTGCCGAGCCA
Str: >>>.>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<.<<<.

Contig1.trna9 (275529-275602)	Length: 74 bp
Type: Arg	Anticodon: ACG at 35-37 (275563-275565)	Score: 73.18
HMM Sc=55.33	Sec struct Sc=17.85
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GCAGGCGTGGCTCAACTGGAtAGAGTACCTGACTACGAATCAGGCGGtTGTAGGTTCGAATCCTACCGCTTGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna10 (275665-275738)	Length: 74 bp
Type: Pro	Anticodon: TGG at 35-37 (275699-275701)	Score: 80.16
HMM Sc=58.27	Sec struct Sc=21.89
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: CGGGAAGTAGCTCAGCTtGGTAGAGTACTTGGTTTGGGACCAAGGTGtCGCAGGTTCGAATCCTGTCTTCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna11 (442168-442238)	Length: 71 bp
Type: Cys	Anticodon: GCA at 33-35 (442200-442202)	Score: 60.16
HMM Sc=38.23	Sec struct Sc=21.93
         *    |    *    |    *    |    *    |    *    |    *    |    *    |
Seq: GGCGGCGTAGTGAAGTGGTAACACATGGCTCTGCAAAAGCTTAAtCGTCGGTTCAAATCCGACCGTCGCCT
Str: >>>>>>>..>>>.........<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna12 (466065-466138)	Length: 74 bp
Type: Arg	Anticodon: TCT at 35-37 (466099-466101)	Score: 79.44
HMM Sc=60.13	Sec struct Sc=19.31
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GGTCCGATAGCTCAGCTGGAtAGAGCATTCGCCTTCTAAGCGAACGGtCGAGGGTTCGAATCCCCCTCGGATCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<.

Contig1.trna13 (519838-519910)	Length: 73 bp
Type: Ala	Anticodon: TGC at 34-36 (519871-519873)	Score: 84.64
HMM Sc=67.45	Sec struct Sc=17.19
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTAGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna14 (523151-523223)	Length: 73 bp
Type: Val	Anticodon: TAC at 34-36 (523184-523186)	Score: 84.84
HMM Sc=63.40	Sec struct Sc=21.44
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GGGAGTTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGtCAGCGGTTCGATCCCGTTAACTCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna15 (523253-523325)	Length: 73 bp
Type: Asp	Anticodon: GTC at 34-36 (523286-523288)	Score: 72.62
HMM Sc=45.01	Sec struct Sc=27.61
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GGTTCTGTAGTGTAGCGGTtATCACGTCGCCCTGTCACGGCGAAGAtCGCGGGTTCGATTCCCGTCAGAACCG
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna16 (523343-523415)	Length: 73 bp
Type: Lys	Anticodon: TTT at 34-36 (523376-523378)	Score: 83.14
HMM Sc=58.94	Sec struct Sc=24.20
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GACTCGTTAGCTCAGTTGGTAGAGCATTTGACTTTTAATCAAAGGGtCGCTGGTTCGAGCCCAGCACGGGTCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna17 (523425-523506)	Length: 82 bp
Type: Leu	Anticodon: TAG at 35-37 (523459-523461)	Score: 66.93
HMM Sc=44.40	Sec struct Sc=22.53
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    | 
Seq: GCGGATGTGGCGGAATTGGCaGACGCACTAGATTTAGGATCTAGCGCTTAACGGCGTGGGGGTTCAAGTCCCTTCATCCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<.

Contig1.trna18 (523520-523592)	Length: 73 bp
Type: Thr	Anticodon: TGT at 34-36 (523553-523555)	Score: 83.91
HMM Sc=58.80	Sec struct Sc=25.11
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GCCGACTTAGCTCAGTTGGTAGAGCATCTGATTTGTAATCAGAGGGtCGCGTGTTCGAATCATGTAGTCGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna19 (523618-523689)	Length: 72 bp
Type: Gly	Anticodon: GCC at 33-35 (523650-523652)	Score: 72.25
HMM Sc=43.88	Sec struct Sc=28.37
         *    |    *    |    *    |    *    |    *    |    *    |    *    | 
Seq: GCGAACGTAGTTCAGGGGTAGAACACAACCTTGCCATGGTTGGGGtCGCGAGTTCGAATCTCGTCGTTCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna20 (523728-523801)	Length: 74 bp
Type: Arg	Anticodon: ACG at 35-37 (523762-523764)	Score: 73.18
HMM Sc=55.33	Sec struct Sc=17.85
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GCAGGCGTGGCTCAACTGGAtAGAGTACCTGACTACGAATCAGGCGGtTGTAGGTTCGAATCCTACCGCTTGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna21 (523807-523880)	Length: 74 bp
Type: Pro	Anticodon: TGG at 35-37 (523841-523843)	Score: 80.16
HMM Sc=58.27	Sec struct Sc=21.89
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: CGGGAAGTAGCTCAGCTtGGTAGAGTACTTGGTTTGGGACCAAGGTGtCGCAGGTTCGAATCCTGTCTTCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna22 (523918-523991)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (523952-523954)	Score: 75.67
HMM Sc=64.31	Sec struct Sc=11.36
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GGCGGTGTAGCTCAGCTGGCtAGAGCGTTCGGTTCATACCCGAGAGGtCGGGGGTTCGATCCCCTTCGCCGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna23 (524004-524077)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (524038-524040)	Score: 86.03
HMM Sc=60.08	Sec struct Sc=25.95
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GGATCTTTAGCTCAGTTGGTtAGAGCTATCGGCTCATAACCGATCGGtCGCTGGTTCGAATCCAGCAAGATCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna24 (524085-524157)	Length: 73 bp
Type: Phe	Anticodon: GAA at 34-36 (524118-524120)	Score: 75.06
HMM Sc=63.13	Sec struct Sc=11.93
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GGCTCGGTAGCTCAGTTGGTAGAGCAATGGATTGAAGCTCCATGTGtCGGCGGTTCGATTCCGTCTCGCGCCA
Str: >>>.>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<.<<<.

Contig1.trna25 (524168-524238)	Length: 71 bp
Type: Gly	Anticodon: TCC at 33-35 (524200-524202)	Score: 66.56
HMM Sc=44.70	Sec struct Sc=21.86
         *    |    *    |    *    |    *    |    *    |    *    |    *    |
Seq: GCGGATGTAGTTTAATGGTAGAACCCCAGCCTTCCAAGCTGGCTACGCGAGTTCGATTCTCGTCATCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

Contig1.trna26 (524264-524337)	Length: 74 bp
Type: Ile	Anticodon: GAT at 35-37 (524298-524300)	Score: 79.86
HMM Sc=56.79	Sec struct Sc=23.07
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GGGAGTTTAGCTCAGTTGGTtAGAGCACTGTGTTGATAACGCAGGGGtCCCAGGTTCGAATCCTGGAATTCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna27 (524380-524467)	Length: 88 bp
Type: Ser	Anticodon: GCT at 35-37 (524414-524416)	Score: 58.10
HMM Sc=23.40	Sec struct Sc=34.70
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *  
Seq: GGGGGGTTACTCAAGAGGCtgAAGAGGACGGTTTGCTAAATCGTTAGGTCGGGAAACCGGCGCGAGGGTTCGAATCCCTTACCCCCCT
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<.

Contig1.trna28 (593652-593723)	Length: 72 bp
Type: Arg	Anticodon: CCG at 34-36 (593685-593687)	Score: 55.69
HMM Sc=31.60	Sec struct Sc=24.09
         *    |    *    |    *    |    *    |    *    |    *    |    *    | 
Seq: GCGTCCGTAGTGTAATGGAtATCACGCGAGATTCCGATTCTTGCAATGGGGGTTCGATTCCCTCCGGACGCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

Contig1.trna29 (595838-595913)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (595871-595873)	Score: 83.76
HMM Sc=59.54	Sec struct Sc=24.22
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GACTCGTTAGCTCAGTTGGTAGAGCATTTGACTTTTAATCAAAGGGtCGCTGGTTCGAGCCCAGCACGGGTCACTA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig1.trna30 (701024-701097)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (701058-701060)	Score: 72.61
HMM Sc=45.70	Sec struct Sc=26.91
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: AGCGGGATGGAGCAGTTaGGTAGCTCGTCGGGCTCATAACCCGAAGGtCATAGGTTCAAATCCTATTCCCGCAA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<..

Contig1.trna31 (1050871-1050941)	Length: 71 bp
Type: Lys	Anticodon: TTT at 34-36 (1050904-1050906)	Score: 55.65
HMM Sc=29.32	Sec struct Sc=26.33
         *    |    *    |    *    |    *    |    *    |    *    |    *    |
Seq: GGCTGCATGGTCAAGGGGTtAAGACACTGCACTTTTAATGCAGAGGCGTGAGTTCGAATCTCACTCAGTCA
Str: >>>>>.>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<.

Contig1.trna32 (1722108-1722180)	Length: 73 bp
Type: Arg	Anticodon: CCT at 35-37 (1722142-1722144)	Score: 57.61
HMM Sc=33.56	Sec struct Sc=24.05
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GGTCTCTTAGTTAAATTGGAtATAACTACCGCCTCCTAAGCGGTGAtTGCCAGTTCGATTCTGGCAGGGGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

Contig1.trna33 (2436286-2436214)	Length: 73 bp
Type: Ala	Anticodon: TGC at 34-36 (2436253-2436251)	Score: 84.64
HMM Sc=67.45	Sec struct Sc=17.19
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTAGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna34 (2432966-2432895)	Length: 72 bp
Type: Glu	Anticodon: TTC at 34-36 (2432933-2432931)	Score: 64.66
HMM Sc=38.01	Sec struct Sc=26.65
         *    |    *    |    *    |    *    |    *    |    *    |    *    | 
Seq: GGTCCGTTGGTCAAGGGGTtAAGACACCGCCTTTTCACGGCGGTAACACGGGTTCGAATCCCGTACGGACTA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

Contig1.trna35 (2432858-2432785)	Length: 74 bp
Type: Asn	Anticodon: GTT at 35-37 (2432824-2432822)	Score: 74.24
HMM Sc=48.39	Sec struct Sc=25.85
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: TGCGGATTAGCTCAGTTGGTaGTAGCGCATGACTGTTAATCATGATGtCGTCAGTTCGAGTCTGACATCCGCAG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna36 (2400369-2400297)	Length: 73 bp
Type: Ala	Anticodon: TGC at 34-36 (2400336-2400334)	Score: 84.64
HMM Sc=67.45	Sec struct Sc=17.19
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTAGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna37 (2397056-2396984)	Length: 73 bp
Type: Val	Anticodon: TAC at 34-36 (2397023-2397021)	Score: 84.84
HMM Sc=63.40	Sec struct Sc=21.44
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GGGAGTTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGtCAGCGGTTCGATCCCGTTAACTCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna38 (2396948-2396868)	Length: 81 bp
Type: Tyr	Anticodon: GTA at 35-37 (2396914-2396912)	Score: 65.00
HMM Sc=37.59	Sec struct Sc=27.41
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |
Seq: GGAAGGGTAGCGAAGAGGCtaAACGCGGCGGACTGTAAATCCGCTCCTTCGGGTtCGGGGGTTCGAATCCCTCCCCTTCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>..<<<...>>>>>.......<<<<<<<<<<<<.

Contig1.trna39 (2396851-2396781)	Length: 71 bp
Type: Trp	Anticodon: CCA at 33-35 (2396819-2396817)	Score: 53.54
HMM Sc=25.77	Sec struct Sc=27.77
         *    |    *    |    *    |    *    |    *    |    *    |    *    |
Seq: ACGGGCATAGTATAAAGGTAGTACAAAGGTCTCCAAAACCTTTGGTGTGGGTTCAATTCCTGCTGCCCGTG
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

Contig1.trna40 (2396769-2396697)	Length: 73 bp
Type: His	Anticodon: GTG at 34-36 (2396736-2396734)	Score: 70.83
HMM Sc=48.84	Sec struct Sc=21.99
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GCGGATGTGGTGAAGTGGTtAACACACCAGCTTGTGGCGCTGGCACtCGCGGGTTCGATTCCCGTCATCCGCC
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna41 (2396688-2396617)	Length: 72 bp
Type: Gln	Anticodon: TTG at 33-35 (2396656-2396654)	Score: 64.56
HMM Sc=36.74	Sec struct Sc=27.82
         *    |    *    |    *    |    *    |    *    |    *    |    *    | 
Seq: TGGGGTATAGCCAAGCGGTAAGGCAAGGGACTTTGACTCCCTCATgCGTTGGTTCGAATCCAGCTACCCCAG
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna42 (2396604-2396521)	Length: 84 bp
Type: Leu	Anticodon: CAA at 35-37 (2396570-2396568)	Score: 61.97
HMM Sc=34.20	Sec struct Sc=27.77
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GCCGAAGTGGCGGAATAGGCaGACGCGCCAGACTCAAAATCTGGTTCCTTCACGGGAGTGCCGGTTCGACCCCGGCCTTCGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

Contig1.trna43 (2354735-2354653)	Length: 83 bp
Type: Leu	Anticodon: CAG at 34-36 (2354702-2354700)	Score: 62.88
HMM Sc=31.83	Sec struct Sc=31.05
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GGGGAAGTGGTGGAATGGCaGACACGCATGCTTCAGGTGCATGTGCGAGAAATCGCGTGAGGGTTCAAATCCCTTCTTCCCCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

Contig1.trna44 (2325933-2325861)	Length: 73 bp
Type: Ala	Anticodon: TGC at 34-36 (2325900-2325898)	Score: 84.64
HMM Sc=67.45	Sec struct Sc=17.19
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTAGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna45 (2281024-2280952)	Length: 73 bp
Type: Ala	Anticodon: TGC at 34-36 (2280991-2280989)	Score: 84.64
HMM Sc=67.45	Sec struct Sc=17.19
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTAGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna46 (2215107-2215035)	Length: 73 bp
Type: Thr	Anticodon: GGT at 34-36 (2215074-2215072)	Score: 70.82
HMM Sc=48.87	Sec struct Sc=21.95
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GCCGTTGTAGCTCAGTCGGTAGAGCAGCACCATGGTAAGGTGAAGGtCGACAGTTCGATTCTGTTCAATGGCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<.

Contig1.trna47 (2041005-2040933)	Length: 73 bp
Type: Ala	Anticodon: TGC at 34-36 (2040972-2040970)	Score: 84.64
HMM Sc=67.45	Sec struct Sc=17.19
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTAGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna48 (2037692-2037620)	Length: 73 bp
Type: Val	Anticodon: TAC at 34-36 (2037659-2037657)	Score: 84.84
HMM Sc=63.40	Sec struct Sc=21.44
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GGGAGTTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGtCAGCGGTTCGATCCCGTTAACTCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna49 (2037590-2037518)	Length: 73 bp
Type: Asp	Anticodon: GTC at 34-36 (2037557-2037555)	Score: 72.62
HMM Sc=45.01	Sec struct Sc=27.61
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GGTTCTGTAGTGTAGCGGTtATCACGTCGCCCTGTCACGGCGAAGAtCGCGGGTTCGATTCCCGTCAGAACCG
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna50 (2037500-2037428)	Length: 73 bp
Type: Lys	Anticodon: TTT at 34-36 (2037467-2037465)	Score: 83.14
HMM Sc=58.94	Sec struct Sc=24.20
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GACTCGTTAGCTCAGTTGGTAGAGCATTTGACTTTTAATCAAAGGGtCGCTGGTTCGAGCCCAGCACGGGTCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna51 (2037418-2037337)	Length: 82 bp
Type: Leu	Anticodon: TAG at 35-37 (2037384-2037382)	Score: 66.93
HMM Sc=44.40	Sec struct Sc=22.53
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    | 
Seq: GCGGATGTGGCGGAATTGGCaGACGCACTAGATTTAGGATCTAGCGCTTAACGGCGTGGGGGTTCAAGTCCCTTCATCCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<.

Contig1.trna52 (2037323-2037251)	Length: 73 bp
Type: Thr	Anticodon: TGT at 34-36 (2037290-2037288)	Score: 83.91
HMM Sc=58.80	Sec struct Sc=25.11
         *    |    *    |    *    |    *    |    *    |    *    |    *    |  
Seq: GCCGACTTAGCTCAGTTGGTAGAGCATCTGATTTGTAATCAGAGGGtCGCGTGTTCGAATCATGTAGTCGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna53 (2037225-2037154)	Length: 72 bp
Type: Gly	Anticodon: GCC at 33-35 (2037193-2037191)	Score: 67.57
HMM Sc=42.52	Sec struct Sc=25.05
         *    |    *    |    *    |    *    |    *    |    *    |    *    | 
Seq: GCGAACGTAGTTCAGGGGTAGAACATAACCTTGCCATGGTTGGGGtCGCGAGTTCGAATCTCGTCGTTCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna54 (2037119-2037034)	Length: 86 bp
Type: Leu	Anticodon: TAA at 35-37 (2037085-2037083)	Score: 61.13
HMM Sc=28.84	Sec struct Sc=32.29
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: CCCGGGGTGGCGGAACTGGCaGACGCACAGGACTTAAAATCCTGCGAGGGGTAACCTTCGTACCGGTTCGAAACCGGTCCTCGGGA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<.

Contig1.trna55 (1701437-1701366)	Length: 72 bp
Type: Gln	Anticodon: TTG at 33-35 (1701405-1701403)	Score: 64.56
HMM Sc=36.74	Sec struct Sc=27.82
         *    |    *    |    *    |    *    |    *    |    *    |    *    | 
Seq: TGGGGTATAGCCAAGCGGTAAGGCAAGGGACTTTGACTCCCTCATgCGTTGGTTCGAATCCAGCTACCCCAG
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna56 (1662654-1662594)	Length: 61 bp
Type: Undet	Anticodon: ??? at 0-0 (0-0)	Score: 30.70
HMM Sc=24.12	Sec struct Sc=6.58
         *    |    *    |    *    |    *    |    *    |    *    |
Seq: GGTTCTTTAGCTCAGTTGGTAGCTAACCGTTCGGtCGCTGGTTCGAGTCCAGCAAGAACCA
Str: >>>>>>>..>>..........<<.>>>.<<<.....>>>>>.......<<<<<<<<<<<<.

Contig1.trna57 (267030-266943)	Length: 88 bp
Type: Ser	Anticodon: GGA at 35-37 (266996-266994)	Score: 54.74
HMM Sc=25.20	Sec struct Sc=29.54
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *  
Seq: GGAGAAGTGTCCGAGTGGTcgAAGGAGCACGCCTGGAAAGTGTGTATACGTCACAAGCGTATCGGGGGTTCGAATCCCCTCTTCTCCT
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>.....<<<<<<.>>>>>.......<<<<<<<<<<<<.

Contig1.trna58 (243019-242931)	Length: 89 bp
Type: Leu	Anticodon: AAG at 35-37 (242985-242983)	Score: 56.98
HMM Sc=29.19	Sec struct Sc=27.79
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *   
Seq: GCGGTGGTGGCGGAATTGGCaGACGCGCAGGATTAAGGATCCTGTCGGGAATTTTCTTGgTGCGGGTTCAAGTCCCGCCCACCGCACTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>..<<<<<...>>>>>.......<<<<<<<<<<<<....

Contig1.trna59 (145077-145002)	Length: 76 bp
Type: Thr	Anticodon: CGT at 34-36 (145044-145042)	Score: 83.33
HMM Sc=64.73	Sec struct Sc=18.60
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GCCGACTTAGCTCAGTCGGTAGAGCACTTCACTCGTAACGAAGGGGtCGTAGGTTCGATTCCTATAGTCGGCACTA
Str: >>>>>>>..>>>>........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig1.trna60 (113861-113775)	Length: 87 bp
Type: Ser	Anticodon: CGA at 33-35 (113829-113827)	Score: 49.07
HMM Sc=29.04	Sec struct Sc=20.03
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GGAGCCATGGCAGAGTGATAATGCAGCGGACTCGAAATCCGTCGAACCTTGTAAaGCCGCGCAGGGGTTCAAATCCCCTTGACTCCT
Str: >>>>.>>..>>>.........<<<.>>>>>.......<<<<<....>..>.....<..<...>>>>>.......<<<<<<<.<<<<.

Contig1.trna61 (100795-100707)	Length: 89 bp
Type: Leu	Anticodon: AAG at 35-37 (100761-100759)	Score: 56.98
HMM Sc=29.19	Sec struct Sc=27.79
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *   
Seq: GCGGTGGTGGCGGAATTGGCaGACGCGCAGGATTAAGGATCCTGTCGGGAATTTTCTTGgTGCGGGTTCAAGTCCCGCCCACCGCACTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>..<<<<<...>>>>>.......<<<<<<<<<<<<....

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