R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 28 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|11094805|gb|AAG29734.1|AC084414_2 (AC084414) signal recognition particle 54
kDa protein 2 (SRP54), putative [Arabidopsis thaliana]
Length = 522
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | 522
0 150 300 450
Plus Strand HSPs:
Score = 651 (229.2 bits), Expect = 7.7e-63, P = 7.7e-63
Identities = 126/139 (90%), Positives = 131/139 (94%), Frame = +1
Query: 4 GFSAELMPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVRE 183
G SAE+MPKG E+ESQ KIKRYMTMMDSMTN+ELDSSNPK+ NESRMMRIARGSGR VRE
Sbjct: 382 GISAEMMPKGHEKESQAKIKRYMTMMDSMTNDELDSSNPKVFNESRMMRIARGSGRQVRE 441
Query: 184 VMEMLEEYKRLVKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQ 363
VMEMLEEYKRL KIWSKMKGLKIPK G+MSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQ
Sbjct: 442 VMEMLEEYKRLAKIWSKMKGLKIPKNGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQ 501
Query: 364 SLMKQMGSAKDMMGMFGGG 420
SLMKQMGS KDMMGMFGGG
Sbjct: 502 SLMKQMGSGKDMMGMFGGG 520
>gi|1711513|sp|P49967|SR53_ARATH SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN 3
(SRP54) >gi|515681|gb|AAA66200.1| (U12127) signal recognition
particle 54 kDa subunit [Arabidopsis thaliana]
Length = 495
Frame 1 hits (HSPs): _______________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 495
0 150 300 450
__________________
Annotated Domains:
BLOCKS BL00300A: SRP54-type proteins GTP-bindin 32..58
BLOCKS BL00300B: SRP54-type proteins GTP-bindin 101..146
BLOCKS BL00300C: SRP54-type proteins GTP-bindin 167..220
BLOCKS BL00300D: SRP54-type proteins GTP-bindin 232..282
BLOCKS BL00300E: SRP54-type proteins GTP-bindin 375..387
BLOCKS BL00300F: SRP54-type proteins GTP-bindin 397..415
Entrez Domain: G-DOMAIN. 1..295
Entrez Domain: M-DOMAIN. 296..495
Entrez np-binding site: GTP (BY SIMILARITY). 108..115
Entrez np-binding site: GTP (BY SIMILARITY). 190..194
Entrez np-binding site: GTP (BY SIMILARITY). 248..251
PFAM SRP54: SRP54-type protein 28..295
PRODOM PD001522: SR51(3) SR52(3) SR53(1) 1..25
PRODOM PD000819: SR54(26) FTSY(12) FLHF(6) 28..294
PRODOM PD001802: SR54(26) SR51(3) SR52(3) 296..422
PRODOM PD006866: SR51(3) SR52(3) SR53(2) 427..494
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 108..115
PROSITE SRP54: SRP54-type proteins GTP-binding d 269..282
__________________
Plus Strand HSPs:
Score = 645 (227.1 bits), Expect = 3.3e-62, P = 3.3e-62
Identities = 125/139 (89%), Positives = 130/139 (93%), Frame = +1
Query: 4 GFSAELMPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVRE 183
G SAE+MPKG E+ESQ KIKRYMTMMDSMTN+ELDSS PK+ NESRMMRIARGSGR VRE
Sbjct: 355 GISAEMMPKGHEKESQAKIKRYMTMMDSMTNDELDSSGPKVFNESRMMRIARGSGRQVRE 414
Query: 184 VMEMLEEYKRLVKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQ 363
VMEMLEEYKRL KIWSKMKGLKIPK G+MSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQ
Sbjct: 415 VMEMLEEYKRLAKIWSKMKGLKIPKNGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQ 474
Query: 364 SLMKQMGSAKDMMGMFGGG 420
SLMKQMGS KDMMGMFGGG
Sbjct: 475 SLMKQMGSGKDMMGMFGGG 493
>gi|1711512|sp|P49972|SR52_LYCES SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN 2
(SRP54) >gi|1076577|pir||S51598 signal recognition particle 54K
protein - tomato (cv. UC82-B) >gi|556902|emb|CAA84288.1| (Z34527)
54-kD signal recognition particle (SRP) specific protein
[Lycopersicon esculentum]
Length = 499
Frame 1 hits (HSPs): _______________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 499
0 150 300 450
__________________
Annotated Domains:
BLOCKS BL00300A: SRP54-type proteins GTP-bindin 32..58
BLOCKS BL00300B: SRP54-type proteins GTP-bindin 101..146
BLOCKS BL00300C: SRP54-type proteins GTP-bindin 167..220
BLOCKS BL00300D: SRP54-type proteins GTP-bindin 232..282
BLOCKS BL00300E: SRP54-type proteins GTP-bindin 375..387
BLOCKS BL00300F: SRP54-type proteins GTP-bindin 397..415
Entrez Domain: G-DOMAIN. 1..295
Entrez Domain: M-DOMAIN. 296..499
Entrez np-binding site: GTP (BY SIMILARITY). 108..115
Entrez np-binding site: GTP (BY SIMILARITY). 190..194
Entrez np-binding site: GTP (BY SIMILARITY). 248..251
PFAM SRP54: SRP54-type protein 28..295
PRODOM PD001522: SR51(3) SR52(3) SR53(1) 1..26
PRODOM PD000819: SR54(26) FTSY(12) FLHF(6) 28..294
PRODOM PD001802: SR54(26) SR51(3) SR52(3) 296..422
PRODOM PD006866: SR51(3) SR52(3) SR53(2) 427..484
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 108..115
PROSITE SRP54: SRP54-type proteins GTP-binding d 269..282
__________________
Plus Strand HSPs:
Score = 644 (226.7 bits), Expect = 4.3e-62, P = 4.3e-62
Identities = 128/143 (89%), Positives = 133/143 (93%), Frame = +1
Query: 4 GFSAELMPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVRE 183
GFSAELMPKGRE ESQ KIKRYMTMMDSMTNEELDSSNPKLM +SR+MRIARGSGR V E
Sbjct: 355 GFSAELMPKGRENESQAKIKRYMTMMDSMTNEELDSSNPKLMTDSRIMRIARGSGRQVHE 414
Query: 184 VMEMLEEYKRLVKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQ 363
VM+M+EEYKRL KIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQ
Sbjct: 415 VMDMMEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQ 474
Query: 364 SLMKQMGSAKDMMG----MFGGG 420
+LMKQMGSAKDMMG MFGGG
Sbjct: 475 NLMKQMGSAKDMMGGMGGMFGGG 497
>gi|1711509|sp|P49971|SR51_LYCES SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN 1
(SRP54) >gi|556900|emb|CAA84275.1| (Z34518) 54-kD signal
recognition particle (SRP) specific protein [Lycopersicon
esculentum]
Length = 496
Frame 1 hits (HSPs): _______________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 496
0 150 300 450
__________________
Annotated Domains:
BLOCKS BL00300A: SRP54-type proteins GTP-bindin 32..58
BLOCKS BL00300B: SRP54-type proteins GTP-bindin 101..146
BLOCKS BL00300C: SRP54-type proteins GTP-bindin 168..221
BLOCKS BL00300D: SRP54-type proteins GTP-bindin 233..283
BLOCKS BL00300E: SRP54-type proteins GTP-bindin 375..387
BLOCKS BL00300F: SRP54-type proteins GTP-bindin 397..415
Entrez Domain: G-DOMAIN. 1..296
Entrez Domain: M-DOMAIN. 297..496
Entrez np-binding site: GTP (BY SIMILARITY). 108..115
Entrez np-binding site: GTP (BY SIMILARITY). 191..195
Entrez np-binding site: GTP (BY SIMILARITY). 249..252
PFAM SRP54: SRP54-type protein 28..296
PRODOM PD001522: SR51(3) SR52(3) SR53(1) 1..26
PRODOM PD000819: SR54(26) FTSY(12) FLHF(6) 28..295
PRODOM PD001802: SR54(26) SR51(3) SR52(3) 297..422
PRODOM PD006866: SR51(3) SR52(3) SR53(2) 427..493
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 108..115
PROSITE SRP54: SRP54-type proteins GTP-binding d 270..283
__________________
Plus Strand HSPs:
Score = 627 (220.7 bits), Expect = 2.7e-60, P = 2.7e-60
Identities = 121/140 (86%), Positives = 134/140 (95%), Frame = +1
Query: 4 GFSAELMPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVRE 183
GFSAE+MP+GRE+ESQ K KRYMTMMDSMT+EELDS+NPK++ ESR+MRIARGSGR V E
Sbjct: 355 GFSAEMMPQGREKESQAKFKRYMTMMDSMTDEELDSTNPKILTESRIMRIARGSGRLVHE 414
Query: 184 VMEMLEEYKRLVKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQ 363
VMEMLEEYKRL KI+SKMKGLKIPKKG+MS+LSRNMNAQ+MSKVLPPQMLKQIGGMGGLQ
Sbjct: 415 VMEMLEEYKRLAKIFSKMKGLKIPKKGDMSSLSRNMNAQNMSKVLPPQMLKQIGGMGGLQ 474
Query: 364 SLMKQMGSAKDMMGMFGGGG 423
+LMKQMGSAKDMMGMFGGGG
Sbjct: 475 NLMKQMGSAKDMMGMFGGGG 494
>gi|2119055|pir||S51597 signal recognition particle 54K protein - tomato (cv.
Rentita)
Length = 496
Frame 1 hits (HSPs): _______________
Annotated Domains: __
__________________________________________________
Database sequence: | | | | | 496
0 150 300 450
__________________
Annotated Domains:
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 108..115
__________________
Plus Strand HSPs:
Score = 627 (220.7 bits), Expect = 2.7e-60, P = 2.7e-60
Identities = 121/140 (86%), Positives = 134/140 (95%), Frame = +1
Query: 4 GFSAELMPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVRE 183
GFSAE+MP+GRE+ESQ K KRYMTMMDSMT+EELDS+NPK++ ESR+MRIARGSGR V E
Sbjct: 355 GFSAEMMPQGREKESQAKFKRYMTMMDSMTDEELDSTNPKILTESRIMRIARGSGRLVHE 414
Query: 184 VMEMLEEYKRLVKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQ 363
VMEMLEEYKRL KI+SKMKGLKIPKKG+MS+LSRNMNAQ+MSKVLPPQMLKQIGGMGGLQ
Sbjct: 415 VMEMLEEYKRLAKIFSKMKGLKIPKKGDMSSLSRNMNAQNMSKVLPPQMLKQIGGMGGLQ 474
Query: 364 SLMKQMGSAKDMMGMFGGGG 423
+LMKQMGSAKDMMGMFGGGG
Sbjct: 475 NLMKQMGSAKDMMGMFGGGG 494
>gi|10177616|dbj|BAB10763.1| (AB023033) SRP54 (signal recognition particle 54
KDa) protein [Arabidopsis thaliana]
Length = 497
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 497
0 150 300 450
Plus Strand HSPs:
Score = 558 (196.4 bits), Expect = 5.5e-53, P = 5.5e-53
Identities = 109/138 (78%), Positives = 121/138 (87%), Frame = +1
Query: 4 GFSAELMPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVRE 183
G AE+MP+G E+ESQ KIKRYMTMMDSMTNEELDSSNPK+ NESR+MRIARGSGR VRE
Sbjct: 357 GMRAEMMPEGHEKESQAKIKRYMTMMDSMTNEELDSSNPKVFNESRIMRIARGSGRIVRE 416
Query: 184 VMEMLEEYKRLVKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQ 363
VMEMLEEYKRL +W K+KGLK +KG MSALS+N N+Q +SKVLP QMLKQIGGM GLQ
Sbjct: 417 VMEMLEEYKRLTTMWGKVKGLKNLEKGNMSALSKNKNSQQLSKVLPAQMLKQIGGMSGLQ 476
Query: 364 SLMKQMGSAKDMMGMFGG 417
SLMKQMGS KD+MGMFGG
Sbjct: 477 SLMKQMGSGKDLMGMFGG 494
>gi|1711510|sp|P49966|SR52_ARATH SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 2
(SRP54) >gi|515679|gb|AAA66199.1| (U12126) signal recognition
particle 54 kDa subunit [Arabidopsis thaliana]
Length = 495
Frame 1 hits (HSPs): _______________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 495
0 150 300 450
__________________
Annotated Domains:
BLOCKS BL00300A: SRP54-type proteins GTP-bindin 32..58
BLOCKS BL00300B: SRP54-type proteins GTP-bindin 101..146
BLOCKS BL00300C: SRP54-type proteins GTP-bindin 167..220
BLOCKS BL00300D: SRP54-type proteins GTP-bindin 232..282
BLOCKS BL00300E: SRP54-type proteins GTP-bindin 375..387
BLOCKS BL00300F: SRP54-type proteins GTP-bindin 397..415
Entrez Domain: G-DOMAIN. 1..295
Entrez Domain: M-DOMAIN. 296..495
Entrez np-binding site: GTP (BY SIMILARITY). 108..115
Entrez np-binding site: GTP (BY SIMILARITY). 190..194
Entrez np-binding site: GTP (BY SIMILARITY). 248..251
PFAM SRP54: SRP54-type protein 28..295
PRODOM PD001522: SR51(3) SR52(3) SR53(1) 1..25
PRODOM PD000819: SR54(26) FTSY(12) FLHF(6) 28..294
PRODOM PD001802: SR54(26) SR51(3) SR52(3) 296..422
PRODOM PD006866: SR51(3) SR52(3) SR53(2) 443..491
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 108..115
PROSITE SRP54: SRP54-type proteins GTP-binding d 269..282
__________________
Plus Strand HSPs:
Score = 554 (195.0 bits), Expect = 1.5e-52, P = 1.5e-52
Identities = 108/138 (78%), Positives = 121/138 (87%), Frame = +1
Query: 4 GFSAELMPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVRE 183
G AE+MP+G E+ESQ +IKRYMTMMDSMTNEELDSSNPK+ NESR+MRIARGSGR VRE
Sbjct: 355 GMRAEMMPEGHEKESQAEIKRYMTMMDSMTNEELDSSNPKVFNESRIMRIARGSGRIVRE 414
Query: 184 VMEMLEEYKRLVKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQ 363
VMEMLEEYKRL +W K+KGLK +KG MSALS+N N+Q +SKVLP QMLKQIGGM GLQ
Sbjct: 415 VMEMLEEYKRLTTMWGKVKGLKNLEKGNMSALSKNKNSQQLSKVLPAQMLKQIGGMSGLQ 474
Query: 364 SLMKQMGSAKDMMGMFGG 417
SLMKQMGS KD+MGMFGG
Sbjct: 475 SLMKQMGSGKDLMGMFGG 492
>gi|1711508|sp|P49968|SR51_HORVU SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN 1
(SRP54) >gi|7440067|pir||T06185 signal recognition particle 54 K
protein - barley >gi|1020000|gb|AAA79354.1| (L48284) signal
recognition particle 54 kDa subunit [Hordeum vulgare]
Length = 497
Frame 1 hits (HSPs): _______________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 497
0 150 300 450
__________________
Annotated Domains:
BLOCKS BL00300A: SRP54-type proteins GTP-bindin 32..58
BLOCKS BL00300B: SRP54-type proteins GTP-bindin 101..146
BLOCKS BL00300C: SRP54-type proteins GTP-bindin 167..220
BLOCKS BL00300D: SRP54-type proteins GTP-bindin 232..282
BLOCKS BL00300E: SRP54-type proteins GTP-bindin 375..387
BLOCKS BL00300F: SRP54-type proteins GTP-bindin 397..415
DOMO DM00433: SRP54-TYPEPROTEINSGTP-BINDINGDO 2..65
DOMO DM00442: SRP54-TYPEPROTEINSGTP-BINDINGDO 67..282
DOMO DM00774: SRP54-TYPEPROTEINSGTP-BINDINGDO 284..448
DOMO DM01298: SIGNALRECOGNITIONPARTICLE54KPRO 450..491
Entrez Domain: G-DOMAIN. 1..295
Entrez Domain: M-DOMAIN. 296..497
Entrez np-binding site: GTP (BY SIMILARITY). 108..115
Entrez np-binding site: GTP (BY SIMILARITY). 190..194
Entrez np-binding site: GTP (BY SIMILARITY). 248..251
PFAM SRP54: SRP54-type protein 28..295
PRODOM PD001522: SR51(3) SR52(3) SR53(1) 1..26
PRODOM PD000819: SR54(26) FTSY(12) FLHF(6) 30..294
PRODOM PD001802: SR54(26) SR51(3) SR52(3) 296..422
PRODOM PD006866: SR51(3) SR52(3) SR53(2) 427..492
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 108..115
PROSITE SRP54: SRP54-type proteins GTP-binding d 269..282
__________________
Plus Strand HSPs:
Score = 531 (186.9 bits), Expect = 4.0e-50, P = 4.0e-50
Identities = 104/143 (72%), Positives = 122/143 (85%), Frame = +1
Query: 4 GFSAELMPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVRE 183
GFS+ELMPKG E+E Q KIKRYMT+MDSMT ELDS+NPKLM ESR++RIARGSGR +R+
Sbjct: 355 GFSSELMPKGHEKEGQAKIKRYMTIMDSMTAAELDSTNPKLMTESRIIRIARGSGRQIRD 414
Query: 184 VMEMLEEYKRLVKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQ 363
V +MLEEYKRL K+WSKMKGLK+PK G+MS LS+N+N Q M+K LPPQ+LKQ+GGMGGLQ
Sbjct: 415 VTDMLEEYKRLAKMWSKMKGLKMPKNGKMSDLSQNLNIQQMTKALPPQVLKQMGGMGGLQ 474
Query: 364 SLMKQMGSAKDMMGMFGG---GGD 426
+LMKQMG KDM M GG GGD
Sbjct: 475 ALMKQMGG-KDMSKMLGGMGLGGD 497
>gi|1711511|sp|P49969|SR52_HORVU SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN 2
(SRP54) >gi|7440068|pir||T06186 signal recognition particle 54 K
protein 2 - barley >gi|1020002|gb|AAA79355.1| (L48285) signal
recognition particle 54 kDa subunit [Hordeum vulgare]
Length = 497
Frame 1 hits (HSPs): _______________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 497
0 150 300 450
__________________
Annotated Domains:
BLOCKS BL00300A: SRP54-type proteins GTP-bindin 32..58
BLOCKS BL00300B: SRP54-type proteins GTP-bindin 101..146
BLOCKS BL00300C: SRP54-type proteins GTP-bindin 167..220
BLOCKS BL00300D: SRP54-type proteins GTP-bindin 232..282
BLOCKS BL00300E: SRP54-type proteins GTP-bindin 375..387
BLOCKS BL00300F: SRP54-type proteins GTP-bindin 397..415
DOMO DM00433: SRP54-TYPEPROTEINSGTP-BINDINGDO 2..65
DOMO DM00442: SRP54-TYPEPROTEINSGTP-BINDINGDO 67..282
DOMO DM00774: SRP54-TYPEPROTEINSGTP-BINDINGDO 284..448
DOMO DM01298: SIGNALRECOGNITIONPARTICLE54KPRO 450..491
Entrez Domain: G-DOMAIN. 1..295
Entrez Domain: M-DOMAIN. 296..497
Entrez np-binding site: GTP (BY SIMILARITY). 108..115
Entrez np-binding site: GTP (BY SIMILARITY). 190..194
Entrez np-binding site: GTP (BY SIMILARITY). 248..251
PFAM SRP54: SRP54-type protein 28..295
PRODOM PD001522: SR51(3) SR52(3) SR53(1) 1..26
PRODOM PD000819: SR54(26) FTSY(12) FLHF(6) 30..294
PRODOM PD001802: SR54(26) SR51(3) SR52(3) 296..422
PRODOM PD006866: SR51(3) SR52(3) SR53(2) 427..492
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 108..115
PROSITE SRP54: SRP54-type proteins GTP-binding d 269..282
__________________
Plus Strand HSPs:
Score = 531 (186.9 bits), Expect = 4.0e-50, P = 4.0e-50
Identities = 104/143 (72%), Positives = 122/143 (85%), Frame = +1
Query: 4 GFSAELMPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVRE 183
GFS+ELMPKG E+E Q KIKRYMT+MDSMT ELDS+NPKLM ESR++RIARGSGR +R+
Sbjct: 355 GFSSELMPKGHEKEGQAKIKRYMTIMDSMTAAELDSTNPKLMTESRIIRIARGSGRQIRD 414
Query: 184 VMEMLEEYKRLVKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQ 363
V +MLEEYKRL K+WSKMKGLK+PK G+MS LS+N+N Q M+K LPPQ+LKQ+GGMGGLQ
Sbjct: 415 VTDMLEEYKRLAKMWSKMKGLKMPKNGKMSDLSQNLNIQQMTKALPPQVLKQMGGMGGLQ 474
Query: 364 SLMKQMGSAKDMMGMFGG---GGD 426
+LMKQMG KDM M GG GGD
Sbjct: 475 ALMKQMGG-KDMSKMLGGMGLGGD 497
>gi|586036|sp|P37106|SR51_ARATH SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 1
(SRP54) >gi|629560|pir||S42550 signal recognition particle 54K
protein - Arabidopsis thaliana >gi|304111|gb|AAA19728.1| (L19997)
signal recognition particle 54 kDa subunit [Arabidopsis thaliana]
>gi|5103829|gb|AAD39659.1|AC007591_24 (AC007591) Identical to
gb|L19997 signal recognition particle 54 kDa subunit (Srp54-1) from
Arabidopsis thaliana. ESTs gb|T88590 and gb|T20603 come from this
gene
Length = 479
Frame 1 hits (HSPs): ______________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 479
0 150 300 450
__________________
Annotated Domains:
BLOCKS BL00300A: SRP54-type proteins GTP-bindin 32..58
BLOCKS BL00300B: SRP54-type proteins GTP-bindin 101..146
BLOCKS BL00300C: SRP54-type proteins GTP-bindin 167..220
BLOCKS BL00300D: SRP54-type proteins GTP-bindin 232..282
BLOCKS BL00300E: SRP54-type proteins GTP-bindin 374..386
BLOCKS BL00300F: SRP54-type proteins GTP-bindin 396..414
DOMO DM00433: SRP54-TYPEPROTEINSGTP-BINDINGDO 2..64
DOMO DM00442: SRP54-TYPEPROTEINSGTP-BINDINGDO 66..283
DOMO DM00774: SRP54-TYPEPROTEINSGTP-BINDINGDO 285..439
DOMO DM01298: SIGNALRECOGNITIONPARTICLE54KPRO 441..476
Entrez Domain: G-DOMAIN. 1..295
Entrez Domain: M-DOMAIN. 296..479
Entrez np-binding site: GTP (BY SIMILARITY). 108..115
Entrez np-binding site: GTP (BY SIMILARITY). 190..194
Entrez np-binding site: GTP (BY SIMILARITY). 248..251
PFAM SRP54: SRP54-type protein 28..295
PRODOM PD001522: SR51(3) SR52(3) SR53(1) 1..26
PRODOM PD000819: SR54(26) FTSY(12) FLHF(6) 28..294
PRODOM PD001802: SR54(26) SR51(3) SR52(3) 296..421
PRODOM PD006866: SR51(3) SR52(3) SR53(2) 423..478
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 108..115
PROSITE SRP54: SRP54-type proteins GTP-binding d 269..282
__________________
Plus Strand HSPs:
Score = 489 (172.1 bits), Expect = 1.1e-45, P = 1.1e-45
Identities = 102/140 (72%), Positives = 113/140 (80%), Frame = +1
Query: 4 GFSAELMPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVRE 183
G SAE+MPKG ES+ K+KRYMTMMDSMTN+ELDS NPK+ NESR+MRIARGSGR VRE
Sbjct: 354 GISAEMMPKGHGEESRVKMKRYMTMMDSMTNKELDSPNPKIFNESRIMRIARGSGRLVRE 413
Query: 184 VMEMLEEYKRLVKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQ 363
VMEMLEEYKR+ K MKG+KIPK G+MS KV+PPQMLKQ+GGM GLQ
Sbjct: 414 VMEMLEEYKRIAKT---MKGIKIPKNGDMS------------KVIPPQMLKQMGGMSGLQ 458
Query: 364 SLMKQMGSAKDMMGMFGGGG 423
SLMKQMGSAKDMMGMFGGGG
Sbjct: 459 SLMKQMGSAKDMMGMFGGGG 478
>gi|1711514|sp|P49970|SR53_HORVU SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN 3
(SRP54) >gi|7440069|pir||T06187 signal recognition particle 54 K
protein 3 - barley >gi|1020004|gb|AAA79356.1| (L48286) signal
recognition particle 54 kDa subunit [Hordeum vulgare]
Length = 493
Frame 1 hits (HSPs): _______________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 493
0 150 300 450
__________________
Annotated Domains:
BLOCKS BL00300A: SRP54-type proteins GTP-bindin 31..57
BLOCKS BL00300B: SRP54-type proteins GTP-bindin 100..145
BLOCKS BL00300C: SRP54-type proteins GTP-bindin 166..219
BLOCKS BL00300D: SRP54-type proteins GTP-bindin 231..281
BLOCKS BL00300E: SRP54-type proteins GTP-bindin 374..386
BLOCKS BL00300F: SRP54-type proteins GTP-bindin 396..414
DOMO DM00433: SRP54-TYPEPROTEINSGTP-BINDINGDO 2..64
DOMO DM00442: SRP54-TYPEPROTEINSGTP-BINDINGDO 66..281
DOMO DM00774: SRP54-TYPEPROTEINSGTP-BINDINGDO 283..448
Entrez Domain: G-DOMAIN. 1..294
Entrez Domain: M-DOMAIN. 295..493
Entrez np-binding site: GTP (BY SIMILARITY). 107..114
Entrez np-binding site: GTP (BY SIMILARITY). 189..193
Entrez np-binding site: GTP (BY SIMILARITY). 247..250
PFAM SRP54: SRP54-type protein 27..294
PRODOM PD159729: SR53_HORVU 1..25
PRODOM PD000819: SR54(26) FTSY(12) FLHF(6) 27..293
PRODOM PD001802: SR54(26) SR51(3) SR52(3) 295..421
PRODOM PD006866: SR51(3) SR52(3) SR53(2) 426..488
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 107..114
PROSITE SRP54: SRP54-type proteins GTP-binding d 268..281
__________________
Plus Strand HSPs:
Score = 424 (149.3 bits), Expect = 8.8e-39, P = 8.8e-39
Identities = 86/140 (61%), Positives = 111/140 (79%), Frame = +1
Query: 4 GFSAELMPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVRE 183
GFS+ELMPKG+E++S+ K KRYMT+MDSMT ELDS+NPKLM ESR++R+ARGSGR V++
Sbjct: 354 GFSSELMPKGQEKQSKEKFKRYMTIMDSMTPAELDSTNPKLMTESRIIRVARGSGRKVKD 413
Query: 184 VMEMLEEYKRLVKIWSKMKGLK-IPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGL 360
VMEMLEEYKRL K+WSK K IP+ G+MSA + Q M KV+PPQ+++Q+GG GL
Sbjct: 414 VMEMLEEYKRLAKMWSKRNVSKLIPQNGKMSAQA----IQKMLKVMPPQVVQQMGGKSGL 469
Query: 361 QSLMKQMGSAKDMMGMFGG--GG 423
++L+KQ+G KD M G GG
Sbjct: 470 EALLKQLGGGKDTSKMLAGMRGG 492
>gi|4507215 ref|NP_003127.1| signal recognition particle 54kD [Homo sapiens]
>gi|11433513 ref|XP_007239.1| signal recognition particle 54kD
[Homo sapiens] >gi|134884|sp|P13624|SR54_HUMAN SIGNAL RECOGNITION
PARTICLE 54 KDA PROTEIN (SRP54) >gi|89065|pir||S05197 signal
recognition particle 54K protein - dog >gi|1082802|pir||S54143 SRP
54 protein - human (fragment) >gi|930|emb|CAA34385.1| (X16318) 54k
protein (AA 1-504) [Canis familiaris] >gi|784999|emb|CAA60132.1|
(X86373) SRP 54 [Homo sapiens] >gi|1256820|gb|AAC50994.1| (U51920)
signal recognition particle [Homo sapiens]
>gi|12653733|gb|AAH00652.1|AAH00652 (BC000652) signal recognition
particle 54kD [Homo sapiens] >gi|226429|prf||1512310A SRP protein
54kD [Canis familiaris]
Length = 504
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 504
0 150 300 450
Plus Strand HSPs:
Score = 278 (97.9 bits), Expect = 9.9e-23, P = 9.9e-23
Identities = 62/147 (42%), Positives = 99/147 (67%), Frame = +1
Query: 4 GFSAELMPKGRERESQXKIKRYMTMMDSMTNEELDSSN-PKLMNES--RMMRIARGSGRP 174
GF + M KG E+ES ++K+ MT+MDSM ++ELDS++ K+ ++ R+ R+ARGSG
Sbjct: 354 GFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVS 413
Query: 175 VREVMEMLEEYKRLVKIWSKMKGLK-IPKKGEMSA-LSRNMNA---QHMSKVLPPQMLKQ 339
R+V E+L +Y + ++ KM G+K + K G+MS +S++ A Q M+K++ P++L
Sbjct: 414 TRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHH 473
Query: 340 IGGMGGLQSLMKQM--GSAKDMMGMFG 414
+GGM GLQS+M+Q G+A +M GM G
Sbjct: 474 MGGMAGLQSMMRQFQQGAAGNMKGMMG 500
>gi|6755660 ref|NP_036029.1| signal recognition particle 54 kDa [Mus musculus]
>gi|134886|sp|P14576|SR54_MOUSE SIGNAL RECOGNITION PARTICLE 54 KDA
PROTEIN (SRP54) >gi|54194|emb|CAA34386.1| (X16319) SRP 54K subunit
(AA 1-504) [Mus musculus]
Length = 504
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 504
0 150 300 450
Plus Strand HSPs:
Score = 278 (97.9 bits), Expect = 9.9e-23, P = 9.9e-23
Identities = 62/147 (42%), Positives = 99/147 (67%), Frame = +1
Query: 4 GFSAELMPKGRERESQXKIKRYMTMMDSMTNEELDSSN-PKLMNES--RMMRIARGSGRP 174
GF + M KG E+ES ++K+ MT+MDSM ++ELDS++ K+ ++ R+ R+ARGSG
Sbjct: 354 GFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVS 413
Query: 175 VREVMEMLEEYKRLVKIWSKMKGLK-IPKKGEMSA-LSRNMNA---QHMSKVLPPQMLKQ 339
R+V E+L +Y + ++ KM G+K + K G+MS +S++ A Q M+K++ P++L
Sbjct: 414 TRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHH 473
Query: 340 IGGMGGLQSLMKQM--GSAKDMMGMFG 414
+GGM GLQS+M+Q G+A +M GM G
Sbjct: 474 MGGMAGLQSMMRQFQQGAAGNMKGMMG 500
>gi|91300|pir||S05198 signal recognition particle 54K protein - mouse
Length = 504
Frame 1 hits (HSPs): _______________
Annotated Domains: __ __
__________________________________________________
Database sequence: | | | | | 504
0 150 300 450
__________________
Annotated Domains:
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 108..115
PROSITE SRP54: SRP54-type proteins GTP-binding d 269..282
__________________
Plus Strand HSPs:
Score = 278 (97.9 bits), Expect = 9.9e-23, P = 9.9e-23
Identities = 62/147 (42%), Positives = 99/147 (67%), Frame = +1
Query: 4 GFSAELMPKGRERESQXKIKRYMTMMDSMTNEELDSSN-PKLMNES--RMMRIARGSGRP 174
GF + M KG E+ES ++K+ MT+MDSM ++ELDS++ K+ ++ R+ R+ARGSG
Sbjct: 354 GFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVS 413
Query: 175 VREVMEMLEEYKRLVKIWSKMKGLK-IPKKGEMSA-LSRNMNA---QHMSKVLPPQMLKQ 339
R+V E+L +Y + ++ KM G+K + K G+MS +S++ A Q M+K++ P++L
Sbjct: 414 TRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHH 473
Query: 340 IGGMGGLQSLMKQM--GSAKDMMGMFG 414
+GGM GLQS+M+Q G+A +M GM G
Sbjct: 474 MGGMAGLQSMMRQFQQGAAGNMKGMMG 500
>gi|226430|prf||1512311A SRP protein 54kD [Mus musculus]
Length = 504
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 504
0 150 300 450
Plus Strand HSPs:
Score = 276 (97.2 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 62/147 (42%), Positives = 99/147 (67%), Frame = +1
Query: 4 GFSAELMPKGRERESQXKIKRYMTMMDSMTNEELDSSN-PKLMNES--RMMRIARGSGRP 174
GF + M KG E+ES ++K+ MT+MDSM ++ELDS++ K+ ++ R+ R+ARGSG
Sbjct: 354 GFGTDFMSKGNEQESMARLKKLMTIMDSMWDQELDSTDGAKVFSKQPGRIQRVARGSGVS 413
Query: 175 VREVMEMLEEYKRLVKIWSKMKGLK-IPKKGEMSA-LSRNMNA---QHMSKVLPPQMLKQ 339
R+V E+L +Y + ++ KM G+K + K G+MS +S++ A Q M+K++ P++L
Sbjct: 414 TRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHH 473
Query: 340 IGGMGGLQSLMKQM--GSAKDMMGMFG 414
+GGM GLQS+M+Q G+A +M GM G
Sbjct: 474 MGGMAGLQSMMRQFQQGAAGNMKGMMG 500
>gi|7499565|pir||T21140 hypothetical protein F21D5.7 - Caenorhabditis elegans
(fragment) >gi|3876111|emb|CAA91040.1| (Z54271) contains similarity
to Pfam domain: PF00448 (SRP54-type protein), Score=445.2,
E-value=1.8e-130, N=1~cDNA EST EMBL:M88956 comes from this
gene~cDNA EST EMBL:Z14505 comes from this gene~cDNA EST EMBL:Z14541
comes from this gene~cDNA EST EMBL:Z1> >gi|3876124|emb|CAA92301.1|
(Z68161) contains similarity to Pfam domain: PF00448 (SRP54-type
protein), Score=445.2, E-value=1.8e-130, N=1~cDNA EST EMBL:M88956
comes from this gene~cDNA EST EMBL:Z14505 comes from this gene~cDNA
EST EMBL:Z14541 comes from this gene~cDNA EST EMBL:Z1>
Length = 496
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 496
0 150 300 450
Plus Strand HSPs:
Score = 255 (89.8 bits), Expect = 3.2e-20, P = 3.2e-20
Identities = 61/143 (42%), Positives = 95/143 (66%), Frame = +1
Query: 4 GFSAELMPKGRERESQXKIKRYMTMMDSMTNEELDSSNP-KLMNE--SRMMRIARGSGRP 174
GF +E M KG E+ES ++KR MT+MDSM+++ELD +L + +R+ R+ARGSG
Sbjct: 354 GFGSEFMTKGNEQESVNRLKRMMTVMDSMSDKELDHPKASELFTKEPNRVARVARGSGSH 413
Query: 175 VREVMEMLEEYKR---LVKIWSKMKGLKIPKKGEMSALSRNMNA-------QHMSKVLPP 324
+EV ++L +YK+ +VK +KGL K G+++ +NMN Q M+K++ P
Sbjct: 414 QQEVRDLLAQYKKFSDVVKKIGSIKGLFNGKNGDINP--KNMNPAKMAQLNQQMAKMMDP 471
Query: 325 QMLKQIGGMGGLQSLMKQMGSAKDM 399
++L+Q+GGMGGLQ++M+QM A M
Sbjct: 472 RVLQQMGGMGGLQNMMQQMARAGKM 496
>gi|5679038|gb|AAD46831.1|AF160891_1 (AF160891) BcDNA.GM09489 [Drosophila
melanogaster] >gi|7295492|gb|AAF50806.1| (AE003567) Srp54k gene
product [Drosophila melanogaster]
Length = 508
Frame 1 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | 508
0 150 300 450
Plus Strand HSPs:
Score = 254 (89.4 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 62/154 (40%), Positives = 103/154 (66%), Frame = +1
Query: 4 GFSAELMPKGRERESQXKIKRYMTMMDSMTNEELDSSN-PKLMNE--SRMMRIARGSGRP 174
GFS + M KG E+ES ++KR MTMMDSM++ ELD+ + KL ++ +R +R+A+G+G
Sbjct: 354 GFSQDFMTKGGEQESMARVKRMMTMMDSMSDNELDNRDGAKLFSKQPNRCVRVAQGAGVM 413
Query: 175 VREVMEMLEEYKRLVKIWSKMKGLK-IPKKGEMSALSRNMNA-------QHMSKVLPPQM 330
REV E++ Y + + KM G+K + K+G+M+ +N+N Q ++K++ P+M
Sbjct: 414 EREVKELIAHYTKFSAVVKKMGGVKGLFKQGDMT---KNVNPTQMAKLNQQIAKMIDPRM 470
Query: 331 LKQIGGMGGLQSLMKQM--GSAKDMMG----MFGGGG 423
L+Q+GG+GG+Q++M+Q+ G+A + G M G GG
Sbjct: 471 LQQMGGVGGIQNMMRQLQQGAAGGLGGLGNLMSGFGG 507
>gi|6435763|pdb|1QB2|B Chain B, Crystal Structure Of The Conserved Subdomain Of
Human Protein Srp54m At 2.1a Resolution: Evidence For The Mechanism
Of Signal Peptide Binding >gi|6435762|pdb|1QB2|A Chain A, Crystal
Structure Of The Conserved Subdomain Of Human Protein Srp54m At
2.1a Resolution: Evidence For The Mechanism Of Signal Peptide
Binding
Length = 109
Frame 1 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | | | | 109
0 20 40 60 80 100
Plus Strand HSPs:
Score = 171 (60.2 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 34/81 (41%), Positives = 55/81 (67%), Frame = +1
Query: 4 GFSAELMPKGRERESQXKIKRYMTMMDSMTNEELDSSN-PKLMNES--RMMRIARGSGRP 174
GF + M KG E+ES ++K+ MT+MDSM ++ELDS++ K+ ++ R+ R+ARGSG
Sbjct: 29 GFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVS 88
Query: 175 VREVMEMLEEYKRLVKIWSKM 237
R+V E+L +Y + ++ KM
Sbjct: 89 TRDVQELLTQYTKFAQMVKKM 109
>gi|3334340|sp|O15821|SR54_ENTHI SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN
(SRP54) >gi|2347027|emb|CAA73116.1| (Y12515) 54 kDa subunit of
signal recognition particle [Entamoeba histolytica]
Length = 487
Frame 1 hits (HSPs): ____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 487
0 150 300 450
__________________
Annotated Domains:
Entrez Domain: G-DOMAIN (BY SIMILARITY). 1..295
Entrez Domain: M-DOMAIN (BY SIMILARITY). 296..487
Entrez np-binding site: GTP (BY SIMILARITY). 108..115
Entrez np-binding site: GTP (BY SIMILARITY). 190..194
Entrez np-binding site: GTP (BY SIMILARITY). 248..251
PFAM SRP54: SRP54-type protein 28..295
PRODOM PD160281: SR54_ENTHI 1..26
PRODOM PD000819: SR54(26) FTSY(12) FLHF(6) 28..294
PRODOM PD001802: SR54(26) SR51(3) SR52(3) 296..419
PRODOM PD106140: SR54_ENTHI 421..486
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 108..115
PROSITE SRP54: SRP54-type proteins GTP-binding d 269..282
__________________
Plus Strand HSPs:
Score = 172 (60.5 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 47/114 (41%), Positives = 69/114 (60%), Frame = +1
Query: 49 QXKIKRYMTMMDSMTNEELDSSNPKLMN-ESRMMRIARGSGRPVREVMEMLEEYKRLVKI 225
+ K K +M ++DSMT+ ELD S ++N ESR+ R+ARGSGR +REV E+ E+ +K+
Sbjct: 366 EKKFKVFMVILDSMTDRELDGSAKTMLNDESRIRRLARGSGRDIREVNELFEQ----IKL 421
Query: 226 WSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQI--G-GMGGLQSLMKQMGSA 390
+ + ++PK M A N NAQ + QM + + G LQ LMKQM +A
Sbjct: 422 FQQCID-RLPKA--MRAQLGNCNAQPNEAAMMQQMQRMLPKGVNQAQLQQLMKQMNAA 476
>gi|11498230 ref|NP_069456.1| signal recognition particle, subunit SRP54
(srp54) [Archaeoglobus fulgidus] >gi|3334342|sp|O29633|SR54_ARCFU
SIGNAL RECOGNITION 54 KDA PROTEIN (SRP54) >gi|7440074|pir||F69327
signal recognition particle, subunit SRP54 (srp54) homolog -
Archaeoglobus fulgidus >gi|2650007|gb|AAB90619.1| (AE001062) signal
recognition particle, subunit SRP54 (srp54) [Archaeoglobus
fulgidus]
Length = 433
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | 433
0 150 300
Plus Strand HSPs:
Score = 162 (57.0 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 35/73 (47%), Positives = 49/73 (67%), Frame = +1
Query: 46 SQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVREVMEMLEEYKRLVKI 225
+Q K+K++ +MDSMT EEL NPK+++ SR+ RIA GSG +EV E+L YK + +
Sbjct: 357 TQEKMKKFRVIMDSMTEEEL--LNPKIIDSSRIRRIAIGSGTSPQEVKELLNYYKTMKNL 414
Query: 226 WSKMKGLKIPKKG 264
KMK K+P KG
Sbjct: 415 MKKMKKNKLPIKG 427
>gi|2500887|sp|Q99150|SR54_YARLI SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN
HOMOLOG (SRP54) >gi|1147795|gb|AAC49735.1| (U42418) Srp54p
[Yarrowia lipolytica]
Length = 536
Frame 1 hits (HSPs): _______________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 536
0 150 300 450
__________________
Annotated Domains:
BLOCKS BL00300A: SRP54-type proteins GTP-bindin 31..57
BLOCKS BL00300B: SRP54-type proteins GTP-bindin 103..148
BLOCKS BL00300C: SRP54-type proteins GTP-bindin 169..222
BLOCKS BL00300D: SRP54-type proteins GTP-bindin 234..284
BLOCKS BL00300E: SRP54-type proteins GTP-bindin 374..386
BLOCKS BL00300F: SRP54-type proteins GTP-bindin 397..415
Entrez Domain: G-DOMAIN. 1..297
Entrez Domain: M-DOMAIN. 298..536
Entrez np-binding site: GTP (BY SIMILARITY). 110..117
Entrez np-binding site: GTP (BY SIMILARITY). 192..196
Entrez np-binding site: GTP (BY SIMILARITY). 250..253
PFAM SRP54: SRP54-type protein 27..297
PRODOM PD159732: SR54_YARLI 1..25
PRODOM PD000819: SR54(26) FTSY(12) FLHF(6) 27..296
PRODOM PD001802: SR54(26) SR51(3) SR52(3) 298..422
PRODOM PD106129: SR54_YARLI 424..448
PRODOM PD048637: SR54_YARLI 497..535
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 110..117
PROSITE SRP54: SRP54-type proteins GTP-binding d 271..284
__________________
Plus Strand HSPs:
Score = 163 (57.4 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 49/129 (37%), Positives = 70/129 (54%), Frame = +1
Query: 37 ERESQXKIKRYMTMMDSMTNEELDSSNPKLMNE--SRMMRIARGSGRPVREVMEMLEEYK 210
+ E +IKR + ++DSM +ELDS + E SR+ R+ARGS +REV E+L++ K
Sbjct: 365 DEEGTRRIKRMIYILDSMNQKELDSDG-SIFKEVPSRITRVARGSETSIREVEEVLQQQK 423
Query: 211 RLVKIWSKMKGLKIPKKGEMSALSRNMN--AQHMSKVLPPQMLKQIGGMGGLQSL--MKQ 378
+ + S+M G K G MS + N AQ + Q + GG GG+ + M
Sbjct: 424 MMASMASRMGG----KNGMMSRMQNAQNNPAQMAAAQRRAQQMMG-GGAGGMPGMGGMPG 478
Query: 379 MGSAKDMMGMFGGGG 423
MG M GM G GG
Sbjct: 479 MGGMPGMGGMPGMGG 493
Score = 131 (46.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 46/144 (31%), Positives = 68/144 (47%), Frame = +1
Query: 37 ERESQXKIKRYMTMMDSMTNEELDSSNPKLMN-ESRMMRIARGSGRPVREVMEMLEEYKR 213
+ E +IKR + ++DSM +ELDS SR+ R+ARGS +REV E+L++ K
Sbjct: 365 DEEGTRRIKRMIYILDSMNQKELDSDGSIFKEVPSRITRVARGSETSIREVEEVLQQQKM 424
Query: 214 LVKIWSKMKGLKIPKKGEMSALSRN----MNAQHMSKVLP-------PQM--LKQIGGMG 354
+ + S+M G K M N AQ ++ + P M + +GGM
Sbjct: 425 MASMASRMGG-KNGMMSRMQNAQNNPAQMAAAQRRAQQMMGGGAGGMPGMGGMPGMGGMP 483
Query: 355 GLQSLMKQMGSAKDM---MGMFGGG 420
G+ + G DM GMF GG
Sbjct: 484 GMGGMPGMGGGMPDMSALQGMFPGG 508
>gi|12230630|sp|O59307|SR54_PYRHO SIGNAL RECOGNITION 54 KDA PROTEIN (SRP54)
Length = 443
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 443
0 150 300
Plus Strand HSPs:
Score = 147 (51.7 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 37/94 (39%), Positives = 59/94 (62%), Frame = +1
Query: 4 GFSA--ELMPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPV 177
G+S EL+ G ER ++++ +MDSMT EEL NP+++N SR+ RIARGSG +
Sbjct: 357 GYSLPDELISVGEER-----LRKFKVIMDSMTEEEL--MNPEIINYSRIKRIARGSGTSI 409
Query: 178 REVMEMLEEYKRLVKIWSKMKGLKIPKKGEMSALSR 285
++V E+L +Y ++ K + M K ++S L+R
Sbjct: 410 KDVKELLTQYNQMKKFFKSMN------KRQLSRLAR 439
>gi|7440073|pir||H71176 probable signal recognition particle protein -
Pyrococcus horikoshii >gi|3258124|dbj|BAA30807.1| (AP000007) 445aa
long hypothetical signal recognition particle protein [Pyrococcus
horikoshii]
Length = 445
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 445
0 150 300
Plus Strand HSPs:
Score = 147 (51.7 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 37/94 (39%), Positives = 59/94 (62%), Frame = +1
Query: 4 GFSA--ELMPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPV 177
G+S EL+ G ER ++++ +MDSMT EEL NP+++N SR+ RIARGSG +
Sbjct: 359 GYSLPDELISVGEER-----LRKFKVIMDSMTEEEL--MNPEIINYSRIKRIARGSGTSI 411
Query: 178 REVMEMLEEYKRLVKIWSKMKGLKIPKKGEMSALSR 285
++V E+L +Y ++ K + M K ++S L+R
Sbjct: 412 KDVKELLTQYNQMKKFFKSMN------KRQLSRLAR 441
>gi|3334341|sp|O27376|SR54_METTH SIGNAL RECOGNITION 54 KDA PROTEIN (SRP54)
>gi|7440075|pir||F69042 signal recognition particle protein SRP54 -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2622427|gb|AAB85799.1| (AE000896) signal recognition particle
protein SRP54 [Methanothermobacter thermautotrophicus]
Length = 442
Frame 1 hits (HSPs): __________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 442
0 150 300
__________________
Annotated Domains:
BLOCKS BL00300A: SRP54-type proteins GTP-bindin 31..57
BLOCKS BL00300B: SRP54-type proteins GTP-bindin 99..144
BLOCKS BL00300C: SRP54-type proteins GTP-bindin 163..216
BLOCKS BL00300D: SRP54-type proteins GTP-bindin 228..278
BLOCKS BL00300E: SRP54-type proteins GTP-bindin 369..381
BLOCKS BL00300F: SRP54-type proteins GTP-bindin 389..407
Entrez Domain: G-DOMAIN (BY SIMILARITY). 1..291
Entrez Domain: M-DOMAIN (BY SIMILARITY). 292..442
Entrez np-binding site: GTP (BY SIMILARITY). 106..113
Entrez np-binding site: GTP (BY SIMILARITY). 186..190
Entrez np-binding site: GTP (BY SIMILARITY). 244..247
PFAM SRP54: SRP54-type protein 27..291
PRODOM PD159731: SR54_METTH 1..25
PRODOM PD000819: SR54(26) FTSY(12) FLHF(6) 27..290
PRODOM PD001802: SR54(26) SR51(3) SR52(3) 317..414
PRODOM PD106131: SR54_METTH 416..441
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 106..113
PROSITE SRP54: SRP54-type proteins GTP-binding d 265..278
__________________
Plus Strand HSPs:
Score = 146 (51.4 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 38/88 (43%), Positives = 53/88 (60%), Frame = +1
Query: 22 MPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVREVMEMLE 201
+PK R ++ I++Y+ +MDSMT EEL+ P ++ SR+ RIARGSG +V E+L+
Sbjct: 355 LPKDASRMTEETIRKYLIIMDSMTEEELEK--PDIIKHSRIRRIARGSGTRNEDVKELLK 412
Query: 202 EYKRLVKIWSKMKGLKIPKKG-EMSALSR 285
Y R+ K MKGL K G M L R
Sbjct: 413 YY-RVTK--KAMKGLGRRKMGGPMGQLMR 438
>gi|4538|emb|CAA34781.1| (X16908) Srh1p [Saccharomyces cerevisiae]
Length = 541
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | 541
0 150 300 450
Plus Strand HSPs:
Score = 146 (51.4 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 51/145 (35%), Positives = 78/145 (53%), Frame = +1
Query: 4 GFSAELMPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNE-SRMMRIARGSGRPVR 180
G S + G E SQ K+K+ + ++DSMT EEL+S + E +RM+R+A+GSG V
Sbjct: 363 GMSNMMNQVGEEETSQ-KMKKMVYVLDSMTKEELESDGRMFIEEPTRMVRVAKGSGTSVF 421
Query: 181 EVMEMLEEYKRLVKI----WSKMKGL-----KIPKKGEMSALSRNM----NAQHMSKVLP 321
EV +L + + + ++ + G ++P M + NM N M KV P
Sbjct: 422 EVEMILMQQQMMARMAQTATQQQPGAPGANARMPGMPNMPGMP-NMPGMPNMPGMPKVTP 480
Query: 322 PQMLKQIGGMGGLQSLMKQMGSAKDMMGMFGGG 420
QM++Q Q L + G ++MM MFGGG
Sbjct: 481 -QMMQQ-----AQQKLKQNPGLMQNMMNMFGGG 507
>gi|6325345 ref|NP_015413.1| Signal recognition particle subunit; Srp54p
[Saccharomyces cerevisiae] >gi|1711516|sp|P20424|SR54_YEAST SIGNAL
RECOGNITION PARTICLE 54 KD PROTEIN HOMOLOG (SRP54)
>gi|2119053|pir||JX0112 signal recognition particle 54K protein -
yeast (Saccharomyces cerevisiae) >gi|4542|emb|CAA35952.1| (X51614)
signal recognition particle [Saccharomyces cerevisiae]
>gi|172705|gb|AAA35092.1| (M55517) signal recognition particle 54
kDa subunit [Saccharomyces cerevisiae] >gi|1230693|gb|AAB68136.1|
(U51033) Signal recognition particle 54 kd subunit (Swiss Prot.
accession number P20424) [Saccharomyces cerevisiae]
>gi|226740|prf||1604366B signal recognition particle 54kD protein
[Saccharomyces cerevisiae]
Length = 541
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | 541
0 150 300 450
Plus Strand HSPs:
Score = 146 (51.4 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 51/145 (35%), Positives = 78/145 (53%), Frame = +1
Query: 4 GFSAELMPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNE-SRMMRIARGSGRPVR 180
G S + G E SQ K+K+ + ++DSMT EEL+S + E +RM+R+A+GSG V
Sbjct: 363 GMSNMMNQVGEEETSQ-KMKKMVYVLDSMTKEELESDGRMFIEEPTRMVRVAKGSGTSVF 421
Query: 181 EVMEMLEEYKRLVKI----WSKMKGL-----KIPKKGEMSALSRNM----NAQHMSKVLP 321
EV +L + + + ++ + G ++P M + NM N M KV P
Sbjct: 422 EVEMILMQQQMMARMAQTATQQQPGAPGANARMPGMPNMPGMP-NMPGMPNMPGMPKVTP 480
Query: 322 PQMLKQIGGMGGLQSLMKQMGSAKDMMGMFGGG 420
QM++Q Q L + G ++MM MFGGG
Sbjct: 481 -QMMQQ-----AQQKLKQNPGLMQNMMNMFGGG 507
>gi|134887|sp|P21565|SR54_SCHPO SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN
HOMOLOG (SRP54) >gi|101076|pir||A33644 signal recognition particle
54K protein [imported] - fission yeast (Schizosaccharomyces pombe)
>gi|5096|emb|CAA35951.1| (X51613) signal recognition particle
[Schizosaccharomyces pombe] >gi|173491|gb|AAA35344.1| (M55518)
signal recognition particle 54 kDa subunit [Schizosaccharomyces
pombe] >gi|1262154|emb|CAA94687.1| (Z70720) Srp54
[Schizosaccharomyces pombe] >gi|4678686|emb|CAB41226.1| (AL049662)
signal recognition particle 54 kd protein homolog
[Schizosaccharomyces pombe]
Length = 522
Frame 1 hits (HSPs): _______________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 522
0 150 300 450
__________________
Annotated Domains:
BLOCKS BL00300A: SRP54-type proteins GTP-bindin 32..58
BLOCKS BL00300B: SRP54-type proteins GTP-bindin 101..146
BLOCKS BL00300C: SRP54-type proteins GTP-bindin 167..220
BLOCKS BL00300D: SRP54-type proteins GTP-bindin 232..282
BLOCKS BL00300E: SRP54-type proteins GTP-bindin 372..384
BLOCKS BL00300F: SRP54-type proteins GTP-bindin 395..413
DOMO DM00433: SRP54-TYPEPROTEINSGTP-BINDINGDO 2..64
DOMO DM00442: SRP54-TYPEPROTEINSGTP-BINDINGDO 66..283
DOMO DM00774: SRP54-TYPEPROTEINSGTP-BINDINGDO 285..447
DOMO DM01298: SIGNALRECOGNITIONPARTICLE54KPRO 449..505
Entrez Domain: G-DOMAIN. 1..295
Entrez Domain: M-DOMAIN. 296..522
Entrez np-binding site: GTP (BY SIMILARITY). 108..115
Entrez np-binding site: GTP (BY SIMILARITY). 190..194
Entrez np-binding site: GTP (BY SIMILARITY). 248..251
Entrez mutagenized site: Q->K,R: LETHAL. 110
Entrez mutagenized site: K->G,R: LETHAL. 114
Entrez mutagenized site: T->N: LETHAL. 115
Entrez mutagenized site: D->N: LETHAL. 138
Entrez mutagenized site: R->L,H: COLD SENSITIVE 194
Entrez mutagenized site: T->R,K: LETHAL. 248
Entrez mutagenized site: T->N: COLD SENSITIVE. 248
PFAM SRP54: SRP54-type protein 28..295
PRODOM PD160283: SR54_SCHPO 1..26
PRODOM PD000819: SR54(26) FTSY(12) FLHF(6) 28..294
PRODOM PD001802: SR54(26) SR51(3) SR52(3) 296..418
PRODOM PD106143: SR54_SCHPO 420..521
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 108..115
PROSITE SRP54: SRP54-type proteins GTP-binding d 269..282
__________________
Plus Strand HSPs:
Score = 145 (51.0 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 41/141 (29%), Positives = 69/141 (48%), Frame = +1
Query: 13 AELMPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNE-SRMMRIARGSGRPVREVM 189
+ +M + E ++KR + ++DSMT +ELDS + + SR++R+ARGSG V EV
Sbjct: 355 SNMMNGMNDEEGSLRMKRMLYIVDSMTEQELDSDGLLFVEQPSRVLRVARGSGTSVLEVE 414
Query: 190 EMLEEYKRLVKIWSKMKGLK--IPKKGEMSALSRNMNAQHMSKVLPP-QMLKQIGGMGGL 360
E + + + ++ K+ G + K G A + + + ++ + Q + GGM GL
Sbjct: 415 ETISQVRVFAQMAKKIGGKDGILGKLGGNPAAALKKDPRQLAAMQKRMQAMGMGGGMPGL 474
Query: 361 QSLMKQMGSAKDMMGMFGGGG 423
G M M GGG
Sbjct: 475 NPGSMNFGDISKMANMLMGGG 495
>gi|12230625|sp|O07853|SR54_SULAC SIGNAL RECOGNITION 54 KDA PROTEIN (SRP54)
>gi|2231060|emb|CAA73234.1| (Y12702) fifty-four homologue of SRP54
[Sulfolobus acidocaldarius]
Length = 446
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | 446
0 150 300
Plus Strand HSPs:
Score = 144 (50.7 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 31/76 (40%), Positives = 55/76 (72%), Frame = +1
Query: 22 MPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVREVMEMLE 201
+P+ + + + KI+ +M +M+SMT +ELD NP +++++RM RIA+G+G V EV E+L+
Sbjct: 362 VPEEQLKLGEEKIRTFMAIMNSMTYKELD--NPSIIDKARMRRIAKGAGVTVEEVKELLK 419
Query: 202 EYK---RLVKIWSKMKGL 246
+Y+ L+K+ + KGL
Sbjct: 420 QYQMTNNLLKMVKRRKGL 437
>gi|3334345|sp|Q00179|SR54_ASPNG SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN
HOMOLOG >gi|2119054|pir||JC4572 signal recognition particle 54K
protein homolog - Aspergillus niger >gi|598061|gb|AAB04946.1|
(L38317) srpA gene product [Aspergillus niger]
>gi|1586559|prf||2204256A srpA gene [Aspergillus niger]
Length = 534
Frame 1 hits (HSPs): _____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 534
0 150 300 450
__________________
Annotated Domains:
BLOCKS BL00300A: SRP54-type proteins GTP-bindin 33..59
BLOCKS BL00300B: SRP54-type proteins GTP-bindin 102..147
BLOCKS BL00300C: SRP54-type proteins GTP-bindin 168..221
BLOCKS BL00300D: SRP54-type proteins GTP-bindin 233..283
BLOCKS BL00300E: SRP54-type proteins GTP-bindin 376..388
BLOCKS BL00300F: SRP54-type proteins GTP-bindin 399..417
Entrez Domain: G-DOMAIN. 1..296
Entrez Domain: M-DOMAIN. 297..534
Entrez np-binding site: GTP (BY SIMILARITY). 109..116
Entrez np-binding site: GTP (BY SIMILARITY). 191..195
Entrez np-binding site: GTP (BY SIMILARITY). 249..252
Entrez Domain: POLY-GLY. 468..474
Entrez Domain: POLY-GLY. 493..501
Entrez Domain: POLY-GLY. 522..533
PFAM SRP54: SRP54-type protein 29..296
PRODOM PD161268: SR54_ASPNG 1..28
PRODOM PD000819: SR54(26) FTSY(12) FLHF(6) 30..295
PRODOM PD001802: SR54(26) SR51(3) SR52(3) 297..424
PRODOM PD106137: SR54_ASPNG 426..462
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 109..116
PROSITE SRP54: SRP54-type proteins GTP-binding d 270..283
__________________
Plus Strand HSPs:
Score = 144 (50.7 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 41/132 (31%), Positives = 65/132 (49%), Frame = +1
Query: 37 ERESQXKIKRYMTMMDSMTNEELDSSNPKLMNE-SRMMRIARGSGRPVREVMEMLEEYKR 213
+ + K++R + + DSMT ELD + + SRM+RIA GSG VREV ++L +++
Sbjct: 367 DEDGSMKLRRMIYIFDSMTAAELDGDGKMFVEQPSRMVRIACGSGTTVREVEDLLSQHRM 426
Query: 214 LVKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSLMKQMGSAK 393
+ + ++ G K + + L Q ++ + +M G GG M MG
Sbjct: 427 MAGMAKRVGGQKKQMQRAQNMLKGGNKEQQLA-AMQKRMAAMGGAGGGGFPGMPGMGDMA 485
Query: 394 DMMGMF---GGGG 423
MM M GGGG
Sbjct: 486 KMMQMLQGQGGGG 498
Score = 142 (50.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 41/133 (30%), Positives = 65/133 (48%), Frame = +1
Query: 37 ERESQXKIKRYMTMMDSMTNEELDSSNPKLMNE-SRMMRIARGSGRPVREVMEMLEEYKR 213
+ + K++R + + DSMT ELD + + SRM+RIA GSG VREV ++L +++
Sbjct: 367 DEDGSMKLRRMIYIFDSMTAAELDGDGKMFVEQPSRMVRIACGSGTTVREVEDLLSQHRM 426
Query: 214 LVKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSLMKQMGSAK 393
+ + ++ G K + + L Q ++ + +M G GG M MG
Sbjct: 427 MAGMAKRVGGQKKQMQRAQNMLKGGNKEQQLA-AMQKRMAAMGGAGGGGFPGMPGMGDMA 485
Query: 394 DMMGMF----GGGG 423
MM M GGGG
Sbjct: 486 KMMQMLQGQGGGGG 499
>gi|12230641|sp|Q9V1E8|SR54_PYRAB SIGNAL RECOGNITION 54 KDA PROTEIN (SRP54)
>gi|7440081|pir||B75165 signal recognition particle, chain srp54
(srp54) PAB0320 - Pyrococcus abyssi (strain Orsay)
>gi|5457911|emb|CAB49401.1| (AJ248284) signal recognition particle,
subunit SRP54 (srp54) [Pyrococcus abyssi]
Length = 443
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | 443
0 150 300
Plus Strand HSPs:
Score = 143 (50.3 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 33/78 (42%), Positives = 51/78 (65%), Frame = +1
Query: 4 GFSA--ELMPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPV 177
G+S E++ G ER ++++ +MDSMT EEL NP ++N SR+ RIARGSG V
Sbjct: 357 GYSLPDEVISVGEER-----LRKFKVIMDSMTEEEL--MNPDIINYSRIKRIARGSGTSV 409
Query: 178 REVMEMLEEYKRLVKIWSKM 237
++V E+L +Y ++ K + M
Sbjct: 410 KDVKELLNQYNQMKKFFKSM 429
>gi|2500886|sp|Q57565|SR54_METJA SIGNAL RECOGNITION 54 KDA PROTEIN (SRP54)
>gi|2129283|pir||E64312 signal recognition particle protein -
Methanococcus jannaschii >gi|1590878|gb|AAB98081.1| (U67467) signal
recognition particle, subunit SRP54 [Methanococcus jannaschii]
Length = 451
Frame 1 hits (HSPs): ___________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | || 451
0 150 300 450
__________________
Annotated Domains:
BLOCKS BL00300A: SRP54-type proteins GTP-bindin 31..57
BLOCKS BL00300B: SRP54-type proteins GTP-bindin 100..145
BLOCKS BL00300C: SRP54-type proteins GTP-bindin 165..218
BLOCKS BL00300D: SRP54-type proteins GTP-bindin 231..281
BLOCKS BL00300E: SRP54-type proteins GTP-bindin 292..304
BLOCKS BL00300F: SRP54-type proteins GTP-bindin 392..410
Entrez Domain: G-DOMAIN (BY SIMILARITY). 1..294
Entrez Domain: M-DOMAIN (BY SIMILARITY). 295..451
Entrez np-binding site: GTP (BY SIMILARITY). 107..114
Entrez np-binding site: GTP (BY SIMILARITY). 188..192
Entrez np-binding site: GTP (BY SIMILARITY). 247..250
PFAM SRP54: SRP54-type protein 27..294
PRODOM PD159730: SR54_METJA 1..25
PRODOM PD000819: SR54(26) FTSY(12) FLHF(6) 27..293
PRODOM PD001802: SR54(26) SR51(3) SR52(3) 295..418
PRODOM PD106135: SR54_METJA 420..450
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 107..114
PROSITE SRP54: SRP54-type proteins GTP-binding d 268..281
__________________
Plus Strand HSPs:
Score = 139 (48.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 35/96 (36%), Positives = 52/96 (54%), Frame = +1
Query: 4 GFSAELMPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVRE 183
GF MPK ++ KIK+Y ++ SMT EE + NPK++ SR+ RIARGSG +
Sbjct: 353 GFGGA-MPKELSHLTEAKIKKYKVIISSMTKEERE--NPKIIKASRIRRIARGSGTTEND 409
Query: 184 VMEMLEEYKRLVKIWSKM-KGLKIPKKGEMSALSRNM 291
V E+L Y+ K+ KG + G + + R +
Sbjct: 410 VREVLRYYETTKNAIDKLRKGKMLRIGGPLGQIMRQL 446
>gi|12230633|sp|P70722|SR54_ACIAM SIGNAL RECOGNITION 54 KDA PROTEIN (SRP54)
>gi|4165432|emb|CAA69991.1| (Y08735) fifty-four homologue of SRP54
[Acidianus ambivalens]
Length = 451
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | || 451
0 150 300 450
Plus Strand HSPs:
Score = 139 (48.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 28/74 (37%), Positives = 52/74 (70%), Frame = +1
Query: 22 MPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVREVMEMLE 201
+P+ + + + K+++++ +M+SMT EELD NP ++++SRM RIA GSG + +V E++E
Sbjct: 363 IPEDQLKVGEEKMRKWLAIMNSMTYEELD--NPSIIDKSRMRRIALGSGTEIEDVKELIE 420
Query: 202 EY---KRLVKIWSKMK 240
Y +R +K+ + K
Sbjct: 421 HYNLMQRTIKMLKRRK 436
>gi|226739|prf||1604366A signal recognition particle 54kD protein
[Schizosaccharomyces pombe]
Length = 522
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 522
0 150 300 450
Plus Strand HSPs:
Score = 139 (48.9 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 40/141 (28%), Positives = 68/141 (48%), Frame = +1
Query: 13 AELMPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNE-SRMMRIARGSGRPVREVM 189
+ +M + E ++KR + ++DSM +ELDS + + SR++R+ARGSG V EV
Sbjct: 355 SNMMNGMNDEEGSLRMKRMLYIVDSMIEQELDSDGLLFVEQPSRVLRVARGSGTSVLEVE 414
Query: 190 EMLEEYKRLVKIWSKMKGLK--IPKKGEMSALSRNMNAQHMSKVLPP-QMLKQIGGMGGL 360
E + + + ++ K+ G + K G A + + + ++ + Q + GGM GL
Sbjct: 415 ETISQVRVFAQMAKKIGGKDGILGKLGGNPAAALKKDPRQLAAMQKRMQAMGMGGGMPGL 474
Query: 361 QSLMKQMGSAKDMMGMFGGGG 423
G M M GGG
Sbjct: 475 NPGSMNFGDISKMANMLMGGG 495
>gi|2500883|sp|Q54431|SR54_STRMU SIGNAL RECOGNITION PARTICLE PROTEIN
(FIFTY-FOUR HOMOLOG) >gi|1850607|gb|AAB48050.1|AAB48050 (U88582)
Ffh [Streptococcus mutans]
Length = 516
Frame 1 hits (HSPs): _____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 516
0 150 300 450
__________________
Annotated Domains:
BLOCKS BL00300A: SRP54-type proteins GTP-bindin 32..58
BLOCKS BL00300B: SRP54-type proteins GTP-bindin 101..146
BLOCKS BL00300C: SRP54-type proteins GTP-bindin 168..221
BLOCKS BL00300D: SRP54-type proteins GTP-bindin 233..283
BLOCKS BL00300E: SRP54-type proteins GTP-bindin 294..306
BLOCKS BL00300F: SRP54-type proteins GTP-bindin 395..413
Entrez Domain: G-DOMAIN (BY SIMILARITY). 1..296
Entrez Domain: M-DOMAIN (BY SIMILARITY). 297..516
Entrez np-binding site: GTP (BY SIMILARITY). 108..115
Entrez np-binding site: GTP (BY SIMILARITY). 191..195
Entrez np-binding site: GTP (BY SIMILARITY). 249..252
PFAM SRP54: SRP54-type protein 28..296
PRODOM PD160284: SR54_STRMU 1..26
PRODOM PD000819: SR54(26) FTSY(12) FLHF(6) 28..295
PRODOM PD001802: SR54(26) SR51(3) SR52(3) 297..419
PRODOM PD106142: SR54_STRMU 421..499
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 108..115
PROSITE SRP54: SRP54-type proteins GTP-binding d 270..283
__________________
Plus Strand HSPs:
Score = 136 (47.9 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 38/124 (30%), Positives = 65/124 (52%), Frame = +1
Query: 49 QXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVREVMEMLEEYKRLVKIW 228
+ +I R ++ SMT EE + NP L+ SR RIA GSG V + ++++ + K+
Sbjct: 370 EGEIARKRAIVSSMTPEERE--NPDLLTPSRRRRIASGSGNTFVNVNKFIKDFNQAKKM- 426
Query: 229 SKMKGLKIPKKGEMSALSRNM--NAQHMSKVLPPQMLKQIGGMGGLQSLMKQMGSAKDMM 402
M+G+ G+M+ + + M N +M + L+ + G GG+ + G+ D+
Sbjct: 427 --MQGVM---SGDMNKVMKQMGINPNNMPNNMDSSALEGMMGQGGMPDMSGLSGANMDVS 481
Query: 403 GMFGGG 420
MFGGG
Sbjct: 482 QMFGGG 487
>gi|12230645|sp|Q9YB62|SR54_AERPE SIGNAL RECOGNITION 54 KDA PROTEIN (SRP54)
>gi|7440080|pir||C72556 probable signal recognition protein APE1735
- Aeropyrum pernix (strain K1) >gi|5105423|dbj|BAA80736.1|
(AP000062) 441aa long hypothetical signal recognition protein
[Aeropyrum pernix]
Length = 441
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | 441
0 150 300
Plus Strand HSPs:
Score = 135 (47.5 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 30/71 (42%), Positives = 47/71 (66%), Frame = +1
Query: 28 KGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVREVMEMLEEY 207
+G + + K+KR+M +++SMT EELD P+++++ RM RIA GSG V +V E+L Y
Sbjct: 360 EGALKLGEEKMKRWMAIIESMTYEELD--RPEIIDKRRMRRIAIGSGTSVDDVRELLVYY 417
Query: 208 KRLVKIWSKMK 240
K L + K+K
Sbjct: 418 KNLKTMMKKLK 428
>gi|12230635|sp|Q9HKT0|SR54_THEAC SIGNAL RECOGNITION 54 KDA PROTEIN (SRP54)
>gi|10639683|emb|CAC11655.1| (AL445064) probable signal recognition
particle protein [Thermoplasma acidophilum]
Length = 456
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | || 456
0 150 300 450
Plus Strand HSPs:
Score = 130 (45.8 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 29/74 (39%), Positives = 47/74 (63%), Frame = +1
Query: 40 RESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVREVMEMLEEYKRLV 219
+ ++ K++ Y +MDSMT EEL+ NP+++N R+ RIARG+G +V +L+E+K +
Sbjct: 365 QSAEDKLRMYRIIMDSMTFEELE--NPEIINAKRITRIARGAGVREEDVRMLLKEFKAMK 422
Query: 220 KIWSKMKGLKIPKK 261
MKG + KK
Sbjct: 423 NNMKMMKGNRGLKK 436
>gi|11275265|pir||G82851 signal recognition particle protein XF0073 [imported]
- Xylella fastidiosa (strain 9a5c)
>gi|9104846|gb|AAF82886.1|AE003861_3 (AE003861) signal recognition
particle protein [Xylella fastidiosa]
Length = 434
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 434
0 150 300
Plus Strand HSPs:
Score = 127 (44.7 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 28/82 (34%), Positives = 56/82 (68%), Frame = +1
Query: 34 RERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVREVMEMLEEYKR 213
+++ + ++ R + +++SMT +E NP L+N SR +RIA+GSG +V +++++Y++
Sbjct: 344 KQQVTGKEVPRMIAIINSMTQKE--RRNPALLNGSRRVRIAKGSGLQPSDVNKLMKQYQQ 401
Query: 214 LVKIWSKMKG--LKIPKKGEMSAL 279
+ K+ SK+ G +K +G MSA+
Sbjct: 402 MEKMMSKLSGGGMKGLMRGMMSAM 425
>gi|7440083|pir||F72236 signal recognition particle protein - Thermotoga
maritima (strain MSB8) >gi|4982134|gb|AAD36632.1|AE001802_1
(AE001802) signal recognition particle protein [Thermotoga
maritima]
Length = 433
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 433
0 150 300
Plus Strand HSPs:
Score = 126 (44.4 bits), Expect = 0.00011, P = 0.00011
Identities = 31/77 (40%), Positives = 50/77 (64%), Frame = +1
Query: 25 PKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVREVMEMLEE 204
PK S+ ++K+ +++SMT EE NP ++N SR RIARGSG V++V ++L+
Sbjct: 354 PKVDVEMSEKELKKIEAIINSMTIEE--RRNPGIINASRKRRIARGSGTTVQDVNKLLKS 411
Query: 205 YKRLVKIWSKMK-G-LKIP 255
Y+++ + +MK G KIP
Sbjct: 412 YEQMKALMKRMKKGRFKIP 430
>gi|12230636|sp|Q9HMN5|SR54_HALN1 SIGNAL RECOGNITION 54 KDA PROTEIN (SRP54)
>gi|10581860|gb|AAG20536.1| (AE005125) signal recognition particle;
Srp54 [Halobacterium sp. NRC-1]
Length = 460
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | 460
0 150 300 450
Plus Strand HSPs:
Score = 123 (43.3 bits), Expect = 0.00029, P = 0.00029
Identities = 30/99 (30%), Positives = 55/99 (55%), Frame = +1
Query: 4 GFSAELMPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVRE 183
G EL P +Q +++ + +MDSMT E+ ++P+ + S++ RIARGSG+P
Sbjct: 356 GLMDEL-PDDAMDVTQERMRGFEVIMDSMTEAEM--ADPRSVGASQIRRIARGSGQPEDR 412
Query: 184 VMEMLEEYKRLVKIWSKMKGLKIPKKGEMSALSRNMNAQ 300
V E+L+++K + + + +G+ G+M + M Q
Sbjct: 413 VRELLDQHKMMAQTMQQFQGMG---DGDMQRMMSKMQQQ 448
>gi|6226155|sp|O67615|SR54_AQUAE SIGNAL RECOGNITION PARTICLE PROTEIN
(FIFTY-FOUR HOMOLOG) >gi|7440079|pir||E70448 signal recognition
particle receptor protein - Aquifex aeolicus
>gi|2984037|gb|AAC07579.1| (AE000753) signal recognition particle
receptor protein [Aquifex aeolicus]
Length = 454
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | || 454
0 150 300 450
Plus Strand HSPs:
Score = 121 (42.6 bits), Expect = 0.00049, P = 0.00049
Identities = 30/76 (39%), Positives = 49/76 (64%), Frame = +1
Query: 49 QXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVREVMEMLEEYKRLVKIW 228
+ + K+ +++SMT EE NPK++N SR RIARGSG V +V ++L+ Y+ + K+
Sbjct: 361 EKQFKKIEAIINSMTPEE--RRNPKIINMSRKKRIARGSGTTVSDVNKLLKRYEEMKKMM 418
Query: 229 SKMK---GLK-IPKKGEM 270
K++ G+ IPK +M
Sbjct: 419 RKLQKAGGMPAIPKMPKM 436
>gi|3334344|sp|O42816|SR54_CANAL SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN
HOMOLOG >gi|2739331|emb|CAA10999.1| (AJ222805) Srp54 protein
[Candida albicans]
Length = 556
Frame 1 hits (HSPs): ____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 556
0 150 300 450
__________________
Annotated Domains:
BLOCKS BL00300A: SRP54-type proteins GTP-bindin 29..55
BLOCKS BL00300B: SRP54-type proteins GTP-bindin 118..163
BLOCKS BL00300C: SRP54-type proteins GTP-bindin 184..237
BLOCKS BL00300D: SRP54-type proteins GTP-bindin 249..299
BLOCKS BL00300E: SRP54-type proteins GTP-bindin 310..322
BLOCKS BL00300F: SRP54-type proteins GTP-bindin 416..434
Entrez Domain: G-DOMAIN. 1..312
Entrez Domain: M-DOMAIN. 313..556
Entrez np-binding site: GTP (BY SIMILARITY). 125..132
Entrez np-binding site: GTP (BY SIMILARITY). 207..211
Entrez np-binding site: GTP (BY SIMILARITY). 265..268
PFAM SRP54: SRP54-type protein 25..312
PRODOM PD158415: SR54_CANAL 1..23
PRODOM PD000819: SR54(26) FTSY(12) FLHF(6) 25..311
PRODOM PD001802: SR54(26) SR51(3) SR52(3) 313..441
PRODOM PD106139: SR54_CANAL 443..555
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 125..132
PROSITE SRP54: SRP54-type proteins GTP-binding d 286..299
__________________
Plus Strand HSPs:
Score = 122 (42.9 bits), Expect = 0.00051, P = 0.00051
Identities = 43/136 (31%), Positives = 68/136 (50%), Frame = +1
Query: 13 AELMPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNE-SRMMRIARGSGRPVREVM 189
+ +M + + E+ KIK + +MDSMT +EL+ + E SR++R+ARGSG V EV
Sbjct: 376 SNIMSQVGDEETSKKIKNMIYIMDSMTTKELECDGRIFIKEPSRIVRVARGSGCAVVEVE 435
Query: 190 EMLEEYKRLVKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSL 369
+L++++ + S M + +G N A + PQM + M QS
Sbjct: 436 MILQQHRMM----STMAKSAMAAQGGQPGQPGNPMANN------PQMQRM---MQQAQSN 482
Query: 370 MKQMGSAKDMMGMFGGG 420
M A +M+G GGG
Sbjct: 483 PNFMQQAMNMLGGAGGG 499
>gi|2500881|sp|P56005|SR54_HELPY SIGNAL RECOGNITION PARTICLE PROTEIN
(FIFTY-FOUR HOMOLOG) >gi|7440077|pir||H64663 signal recognition
particle protein - Helicobacter pylori (strain 26695)
>gi|2314305|gb|AAD08194.1| (AE000621) signal recognition particle
protein (ffh) [Helicobacter pylori 26695]
Length = 448
Frame 1 hits (HSPs): ___________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 448
0 150 300
__________________
Annotated Domains:
BLOCKS BL00300A: SRP54-type proteins GTP-bindin 29..55
BLOCKS BL00300B: SRP54-type proteins GTP-bindin 94..139
BLOCKS BL00300C: SRP54-type proteins GTP-bindin 159..212
BLOCKS BL00300D: SRP54-type proteins GTP-bindin 224..274
BLOCKS BL00300E: SRP54-type proteins GTP-bindin 285..297
BLOCKS BL00300F: SRP54-type proteins GTP-bindin 388..406
Entrez Domain: G-DOMAIN. 1..287
Entrez Domain: M-DOMAIN. 288..448
Entrez np-binding site: GTP (BY SIMILARITY). 101..108
Entrez np-binding site: GTP (BY SIMILARITY). 182..186
Entrez np-binding site: GTP (BY SIMILARITY). 240..243
PFAM SRP54: SRP54-type protein 25..287
PRODOM PD158416: Q9ZK62(1) SR54(1) 1..23
PRODOM PD000819: SR54(26) FTSY(12) FLHF(6) 25..286
PRODOM PD001802: SR54(26) SR51(3) SR52(3) 288..412
PRODOM PD106136: Q9ZK62(1) SR54(1) 414..447
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 101..108
PROSITE SRP54: SRP54-type proteins GTP-binding d 261..274
__________________
Plus Strand HSPs:
Score = 119 (41.9 bits), Expect = 0.00083, P = 0.00083
Identities = 33/101 (32%), Positives = 59/101 (58%), Frame = +1
Query: 28 KGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVREVMEMLEEY 207
K + ES ++K+ M++SMT +E + NP+++N SR RIA GSG V E+ +++ +
Sbjct: 356 KDTDLESSLEVKKIKAMVNSMTKKEQE--NPEILNGSRRKRIALGSGLEVSEINRIIKRF 413
Query: 208 KRLVKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQM 330
+ K+ ++ KKG +S L N+ +Q ++ PP+M
Sbjct: 414 DQASKMAKRLTN----KKG-ISDLM-NLMSQAKNQT-PPKM 447
>gi|11387213|sp|Q9ZK62|SR54_HELPJ SIGNAL RECOGNITION PARTICLE PROTEIN
(FIFTY-FOUR HOMOLOG) >gi|7440076|pir||D71852 probable signal
recognition particle protein - Helicobacter pylori (strain J99)
>gi|4155673|gb|AAD06659.1| (AE001535) putative SIGNAL RECOGNITION
PARTICLE PROTEIN [Helicobacter pylori J99]
Length = 448
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 448
0 150 300
Plus Strand HSPs:
Score = 119 (41.9 bits), Expect = 0.00083, P = 0.00083
Identities = 33/101 (32%), Positives = 59/101 (58%), Frame = +1
Query: 28 KGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVREVMEMLEEY 207
K + ES ++K+ M++SMT +E + NP+++N SR RIA GSG V E+ +++ +
Sbjct: 356 KDTDLESSLEVKKIKAMVNSMTKKERE--NPEILNGSRRKRIALGSGLEVSEINRIIKRF 413
Query: 208 KRLVKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQM 330
+ K+ ++ KKG +S L N+ +Q ++ PP+M
Sbjct: 414 DQASKMAKRLTN----KKG-ISDLM-NLMSQAKNQT-PPKM 447
>gi|3334343|sp|O33013|SR54_MYCLE SIGNAL RECOGNITION PARTICLE PROTEIN
(FIFTY-FOUR HOMOLOG) >gi|2251154|emb|CAB10614.1| (Z97369) Ffh
protein [Mycobacterium leprae]
Length = 521
Frame 1 hits (HSPs): _____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 521
0 150 300 450
__________________
Annotated Domains:
BLOCKS BL00300A: SRP54-type proteins GTP-bindin 31..57
BLOCKS BL00300B: SRP54-type proteins GTP-bindin 100..145
BLOCKS BL00300C: SRP54-type proteins GTP-bindin 173..226
BLOCKS BL00300D: SRP54-type proteins GTP-bindin 238..288
BLOCKS BL00300E: SRP54-type proteins GTP-bindin 299..311
BLOCKS BL00300F: SRP54-type proteins GTP-bindin 399..417
Entrez Domain: G-DOMAIN (BY SIMILARITY). 1..301
Entrez Domain: M-DOMAIN (BY SIMILARITY). 302..521
Entrez np-binding site: GTP (BY SIMILARITY). 107..114
Entrez np-binding site: GTP (BY SIMILARITY). 196..200
Entrez np-binding site: GTP (BY SIMILARITY). 254..257
PFAM SRP54: SRP54-type protein 27..301
PRODOM PD153048: SR54(2) 1..25
PRODOM PD000819: SR54(26) FTSY(12) FLHF(6) 27..300
PRODOM PD001802: SR54(26) SR51(3) SR52(3) 302..423
PRODOM PD036477: SR54(2) 425..519
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 107..114
__________________
Plus Strand HSPs:
Score = 118 (41.5 bits), Expect = 0.0014, P = 0.0014
Identities = 36/130 (27%), Positives = 62/130 (47%), Frame = +1
Query: 37 ERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVREVMEMLEEYKRL 216
E+ ++ R ++ MT +E ++PK++N SR +RIA GSG V EV ++++ +
Sbjct: 370 EQVDDKQLDRLQAIIRGMTPQE--RADPKIINASRRLRIANGSGVTVSEVNQLVDRFFEA 427
Query: 217 VKIWSK-MKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMG----GLQSLMKQM 381
K+ S + G+ IP G SA ++ + + P K G G+ +M
Sbjct: 428 RKMMSSVLGGMGIPGMGRKSATRKSKGGKGKKRARGPTSPKVRSPFGPARPGMPDMMNMP 487
Query: 382 GSAKDMMGMFGG 417
S D+ M G
Sbjct: 488 PSFPDLSQMPDG 499
>gi|1711515|sp|Q10963|SR54_MYCTU SIGNAL RECOGNITION PARTICLE PROTEIN
(FIFTY-FOUR HOMOLOG) >gi|7440072|pir||D70747 probable ffh protein -
Mycobacterium tuberculosis (strain H37RV)
>gi|1405951|emb|CAA98978.1| (Z74697) ffh [Mycobacterium
tuberculosis]
Length = 525
Frame 1 hits (HSPs): ____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 525
0 150 300 450
__________________
Annotated Domains:
BLOCKS BL00300A: SRP54-type proteins GTP-bindin 31..57
BLOCKS BL00300B: SRP54-type proteins GTP-bindin 100..145
BLOCKS BL00300C: SRP54-type proteins GTP-bindin 173..226
BLOCKS BL00300D: SRP54-type proteins GTP-bindin 238..288
BLOCKS BL00300E: SRP54-type proteins GTP-bindin 299..311
BLOCKS BL00300F: SRP54-type proteins GTP-bindin 399..417
DOMO DM00433: SRP54-TYPEPROTEINSGTP-BINDINGDO 1..54
DOMO DM00442: SRP54-TYPEPROTEINSGTP-BINDINGDO 56..289
DOMO DM00774: SRP54-TYPEPROTEINSGTP-BINDINGDO 291..451
Entrez Domain: G-DOMAIN (BY SIMILARITY). 1..301
Entrez Domain: M-DOMAIN (BY SIMILARITY). 302..525
Entrez np-binding site: GTP (BY SIMILARITY). 107..114
Entrez np-binding site: GTP (BY SIMILARITY). 196..200
Entrez np-binding site: GTP (BY SIMILARITY). 254..257
PFAM SRP54: SRP54-type protein 27..301
PRODOM PD153048: SR54(2) 1..25
PRODOM PD000819: SR54(26) FTSY(12) FLHF(6) 27..300
PRODOM PD001802: SR54(26) SR51(3) SR52(3) 302..423
PRODOM PD036477: SR54(2) 425..523
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 107..114
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 490..511
PROSITE SRP54: SRP54-type proteins GTP-binding d 275..288
__________________
Plus Strand HSPs:
Score = 117 (41.2 bits), Expect = 0.0018, P = 0.0018
Identities = 39/115 (33%), Positives = 60/115 (52%), Frame = +1
Query: 55 KIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVREVMEMLEEYKRLVKIWSK 234
++ R ++ MT +E ++PK++N SR +RIA GSG V EV +++E + K+ S
Sbjct: 376 QLDRVQAIIRGMTPQE--RADPKIINASRRLRIANGSGVTVSEVNQLVERFFEARKMMSS 433
Query: 235 MKG-LKIPKKGEMSALSRNMNAQ----HMSKV-----LPPQMLKQIG--GMGGLQSL 369
M G + IP G SA ++ A+ SK PP++ G GM GL L
Sbjct: 434 MLGGMGIPGIGRKSATRKSKGAKGKSGKKSKKGTRGPTPPKVKSPFGVPGMPGLAGL 490
>gi|5822474|pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From
Thermus Aquaticus >gi|5822475|pdb|2FFH|B Chain B, The Signal
Sequence Binding Protein Ffh From Thermus Aquaticus
>gi|5822476|pdb|2FFH|C Chain C, The Signal Sequence Binding Protein
Ffh From Thermus Aquaticus
Length = 425
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 425
0 150 300
Plus Strand HSPs:
Score = 114 (40.1 bits), Expect = 0.0030, P = 0.0030
Identities = 31/74 (41%), Positives = 47/74 (63%), Frame = +1
Query: 22 MPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVREV---ME 192
+P+G + + + IKR ++ SMT EE +P+++N SR RIA+GSG V+EV ++
Sbjct: 348 VPQGLKVDEKA-IKRLEAIVLSMTPEE--RKDPRILNGSRRKRIAKGSGTSVQEVNRFIK 404
Query: 193 MLEEYKRLVKIWSKMKG 243
EE K L+K K KG
Sbjct: 405 AFEEMKALMKSLEKKKG 421
>gi|3024639|sp|O07347|SR54_THEAQ SIGNAL RECOGNITION PARTICLE PROTEIN
(FIFTY-FOUR HOMOLOG) >gi|2149137|gb|AAB58502.1| (U82109) Ffh
[Thermus aquaticus]
Length = 430
Frame 1 hits (HSPs): _________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 430
0 150 300
__________________
Annotated Domains:
BLOCKS BL00300A: SRP54-type proteins GTP-bindin 30..56
BLOCKS BL00300B: SRP54-type proteins GTP-bindin 97..142
BLOCKS BL00300C: SRP54-type proteins GTP-bindin 163..216
BLOCKS BL00300D: SRP54-type proteins GTP-bindin 228..278
BLOCKS BL00300E: SRP54-type proteins GTP-bindin 289..301
BLOCKS BL00300F: SRP54-type proteins GTP-bindin 380..398
Entrez Domain: G-DOMAIN. 2..292
Entrez Domain: M-DOMAIN. 293..430
Entrez np-binding site: GTP (BY SIMILARITY). 105..112
Entrez np-binding site: GTP (BY SIMILARITY). 187..191
Entrez np-binding site: GTP (BY SIMILARITY). 245..248
PFAM SRP54: SRP54-type protein 26..291
PRODOM PD159112: SR54_THEAQ 1..24
PRODOM PD000819: SR54(26) FTSY(12) FLHF(6) 26..290
PRODOM PD001802: SR54(26) SR51(3) SR52(3) 292..405
PRODOM PD106127: SR54_THEAQ 407..428
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 105..112
PROSITE SRP54: SRP54-type proteins GTP-binding d 266..279
__________________
Plus Strand HSPs:
Score = 114 (40.1 bits), Expect = 0.0031, P = 0.0031
Identities = 31/74 (41%), Positives = 47/74 (63%), Frame = +1
Query: 22 MPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVREV---ME 192
+P+G + + + IKR ++ SMT EE +P+++N SR RIA+GSG V+EV ++
Sbjct: 348 VPQGLKVDEKA-IKRLEAIVLSMTPEE--RKDPRILNGSRRKRIAKGSGTSVQEVNRFIK 404
Query: 193 MLEEYKRLVKIWSKMKG 243
EE K L+K K KG
Sbjct: 405 AFEEMKALMKSLEKKKG 421
>gi|10175104|dbj|BAB06203.1| (AP001515) signal recognition particle [Bacillus
halodurans]
Length = 451
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | || 451
0 150 300 450
Plus Strand HSPs:
Score = 113 (39.8 bits), Expect = 0.0043, P = 0.0043
Identities = 28/73 (38%), Positives = 46/73 (63%), Frame = +1
Query: 49 QXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVREVMEML---EEYKRLV 219
+ +I R ++ SMT +E +P ++N SR RIA+GSG +++V +L EE K+++
Sbjct: 370 EKQISRVEAIVRSMTKQE--KQDPSIINASRRRRIAKGSGTAIQDVNRLLKQFEEMKKMM 427
Query: 220 KIWSKMKGLKIPKKGE 267
K + M G K KKG+
Sbjct: 428 KQMTNMAG-KAKKKGK 442
>gi|12084139|pdb|1HQ1|A Chain A, Structural And Energetic Analysis Of Rna
Recognition By A Universally Conserved Protein From The Signal
Recognition Particle
Length = 105
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | | | 105
0 20 40 60 80 100
Plus Strand HSPs:
Score = 90 (31.7 bits), Expect = 0.0061, P = 0.0060
Identities = 22/73 (30%), Positives = 43/73 (58%), Frame = +1
Query: 22 MPKGRERESQXKIK-RYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVREVMEML 198
+P + + K+ R +++SMT +E + P+++ SR RIA GSG V++V +L
Sbjct: 33 IPDNVKSQMDDKVLVRMEAIINSMTMKE--RAKPEIIKGSRKRRIAAGSGMQVQDVNRLL 90
Query: 199 EEYKRLVKIWSKMK 240
+++ + ++ KMK
Sbjct: 91 KQFDDMQRMMKKMK 104
>gi|7473915|pir||G75346 signal recognition particle protein - Deinococcus
radiodurans (strain R1) >gi|6459616|gb|AAF11391.1|AE002024_2
(AE002024) signal recognition particle protein [Deinococcus
radiodurans]
Length = 452
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | || 452
0 150 300 450
Plus Strand HSPs:
Score = 111 (39.1 bits), Expect = 0.0075, P = 0.0074
Identities = 32/89 (35%), Positives = 57/89 (64%), Frame = +1
Query: 4 GFSAELMPKGRERESQXKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRPVRE 183
G S L P+G + + +++R M+ SMT +E NPK+++ SR RIA+GSG V++
Sbjct: 348 GMSRAL-PEGFTIDEK-QLQRIDAMISSMTVKE--RRNPKIIDGSRRKRIAQGSGSSVQD 403
Query: 184 VMEML---EEYKRLVKIWSKM-----KGLKIPK 258
+ ++L E+ K ++K+ +M KG+++PK
Sbjct: 404 INKLLKMHEQMKEMMKMLGQMTGGKGKGMRMPK 436
WARNING: HSPs involving 28 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.98
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.356 0.158 0.649
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.376 0.167 0.663
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.333 0.144 0.430
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.351 0.159 0.538
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.350 0.154 0.539
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.355 0.155 0.554
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 216 216 10. 77 3 12 22 0.10 35
32 0.12 38
+2 0 216 215 10. 77 3 12 22 0.10 35
32 0.11 38
+1 0 216 215 10. 77 3 12 22 0.10 35
32 0.11 38
-1 0 216 215 10. 77 3 12 22 0.10 35
32 0.11 38
-2 0 216 215 10. 77 3 12 22 0.10 35
32 0.11 38
-3 0 216 215 10. 77 3 12 22 0.10 35
32 0.11 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 78
No. of states in DFA: 597 (59 KB)
Total size of DFA: 232 KB (256 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 206.42u 1.17s 207.59t Elapsed: 00:00:37
Total cpu time: 206.48u 1.21s 207.69t Elapsed: 00:00:37
Start: Thu Jan 17 12:29:16 2002 End: Thu Jan 17 12:29:53 2002
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000