proteins
| 11 proteins |
S | COG1673 | Uncharacterized protein conserved in archaea | Help | |
|---|---|---|---|---|---|
| 1 from | query genome Archaeoglobus fulgidus (Archaeoglobales | Archaeoglobi) | ||||
| AF2356 | ||||
147 letters (r) 0
0 708 = ||| 1 AF2356 (147) = 0
31
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AF2356
(147 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
AF2356 277 7e-75
MJ1382 181 5e-46
MJECL36 179 2e-45
PAB1780 175 3e-44
PH1033 158 4e-39
PAB2158 56 3e-08
SSO2595 55 7e-08
PAE0239 43 2e-04
MTH310 38 0.007
PAE1465 37 0.018
msl3206 33 0.14
TVN1456 29 3.2
AGl2458 28 6.0
ECs2578 28 8.1
ZyecE 28 8.1
yecE 28 9.5
# >AF2356
# Length = 147
#
# Score = 277 bits (708), Expect = 7e-75
# Identities = 147/147 (100%), Positives = 147/147 (100%)
#
# Query: 1 MAYWLCITNEDNWRVIKEKNIWGVPERHKNTIAKVKKGDKLLIYIKQENVNGEVKPSRIV 60
# MAYWLCITNEDNWRVIKEKNIWGVPERHKNTIAKVKKGDKLLIYIKQENVNGEVKPSRIV
# Sbjct: 1 MAYWLCITNEDNWRVIKEKNIWGVPERHKNTIAKVKKGDKLLIYIKQENVNGEVKPSRIV 60
#
# Query: 61 AVYETASEVYRDSSRIFKSPKGMGNETFPLRIKLKPVKIFDRPIEFKPLIPKLKFITNKR 120
# AVYETASEVYRDSSRIFKSPKGMGNETFPLRIKLKPVKIFDRPIEFKPLIPKLKFITNKR
# Sbjct: 61 AVYETASEVYRDSSRIFKSPKGMGNETFPLRIKLKPVKIFDRPIEFKPLIPKLKFITNKR 120
#
# Query: 121 KWSGHLMGKAMREIPEEDYRLILEYAT 147
# KWSGHLMGKAMREIPEEDYRLILEYAT
# Sbjct: 121 KWSGHLMGKAMREIPEEDYRLILEYAT 147
#
#
# >MJ1382
# Length = 146
#
# Score = 181 bits (459), Expect = 5e-46
# Identities = 102/144 (70%), Positives = 114/144 (78%), Gaps = 1/144 (0%)
#
# Query: 1 MAYWLCITNEDNWRVIKEKNIWGVPERHKNTIAKVKKGDKLLIYIKQENVNGEVKPSRIV 60
# MAYWLCITNEDNW+VIK+K IWGV ERHKNTI KVK GDKL+IY Q + + KP I
# Sbjct: 1 MAYWLCITNEDNWKVIKDKKIWGVAERHKNTINKVKVGDKLIIYEIQRS-GKDYKPPYIR 59
#
# Query: 61 AVYETASEVYRDSSRIFKSPKGMGNETFPLRIKLKPVKIFDRPIEFKPLIPKLKFITNKR 120
# VYE SEVY+DSS+IFK NE FP R+KLK VK+F PI FK LIPKLKFITNK+
# Sbjct: 60 GVYEVVSEVYKDSSKIFKPTPRNPNEKFPYRVKLKEVKVFVPPINFKDLIPKLKFITNKK 119
#
# Query: 121 KWSGHLMGKAMREIPEEDYRLILE 144
# KWSGHLMGKAMREIPEEDY+LI+E
# Sbjct: 120 KWSGHLMGKAMREIPEEDYKLIIE 143
#
#
# >MJECL36
# Length = 147
#
# Score = 179 bits (454), Expect = 2e-45
# Identities = 99/143 (69%), Positives = 114/143 (79%), Gaps = 1/143 (0%)
#
# Query: 1 MAYWLCITNEDNWRVIKEKNIWGVPERHKNTIAKVKKGDKLLIYIKQENVNGEVKPSRIV 60
# MAYWLCITNEDNW+VIKEK IWGV ER+KNTI KVK GDKL+IY Q + + KP I
# Sbjct: 4 MAYWLCITNEDNWKVIKEKKIWGVAERYKNTINKVKVGDKLIIYEIQRS-GKDYKPPYIR 62
#
# Query: 61 AVYETASEVYRDSSRIFKSPKGMGNETFPLRIKLKPVKIFDRPIEFKPLIPKLKFITNKR 120
# VYE SEVY+DSS+IFK NE FP R+KLK +K+F+ PI FK LIPKLKFITNK+
# Sbjct: 63 GVYEVVSEVYKDSSKIFKPTPRNPNEKFPYRVKLKEIKVFEPPINFKELIPKLKFITNKK 122
#
# Query: 121 KWSGHLMGKAMREIPEEDYRLIL 143
# +WSGHLMGKAMREIPEEDY+LI+
# Sbjct: 123 RWSGHLMGKAMREIPEEDYKLIV 145
#
#
# >PAB1780
# Length = 142
#
# Score = 175 bits (444), Expect = 3e-44
# Identities = 90/142 (63%), Positives = 115/142 (80%), Gaps = 4/142 (2%)
#
# Query: 1 MAYWLCITNEDNWRVIKEKNIWGVPERHKNTIAKVKKGDKLLIYIKQENVNGEVKPSRIV 60
# M+YWLCITN DNW+V+KEKN+WGVP RH+NT+ +VK GDKL+ Y+KQE+ GEV IV
# Sbjct: 1 MSYWLCITNRDNWKVVKEKNVWGVPRRHENTMKRVKPGDKLVFYVKQESRKGEVLEPMIV 60
#
# Query: 61 AVYETASEVYRDSSRIFKSPKGMGNETFPLRIKLKPVKIFDRPIEFKPLIPKLKFITNKR 120
# ++E SE Y DS++IFKS ET+P+R+K++P+KI + ++FKPLIPKL FI NK+
# Sbjct: 61 GIFEVVSEPYSDSTKIFKS--HTPGETYPIRVKIRPIKIGE--VKFKPLIPKLSFIKNKK 116
#
# Query: 121 KWSGHLMGKAMREIPEEDYRLI 142
# KWSGHLMGKAMREIPEEDY+LI
# Sbjct: 117 KWSGHLMGKAMREIPEEDYKLI 138
#
#
# >PH1033
# Length = 145
#
# Score = 158 bits (399), Expect = 4e-39
# Identities = 84/143 (58%), Positives = 109/143 (75%), Gaps = 4/143 (2%)
#
# Query: 1 MAYWLCITNEDNWRVIKEKNIWGVPERHKNTIAKVKKGDKLLIYIKQE-NVNGEVKPSRI 59
# M YW+CITN +NW VIK N+WGVP++HKNT+++VK GDKL+IY++QE + G + +I
# Sbjct: 1 MTYWICITNRENWEVIKRHNVWGVPKKHKNTLSRVKPGDKLVIYVRQEKDKEGNLLEPKI 60
#
# Query: 60 VAVYETASEVYRDSSRIFKSPKGMGNETFPLRIKLKPVKIFDRPIEFKPLIPKLKFITNK 119
# V +YE SE Y D SRIFK +G G ET+P R+K+KP+KI + I FKPLI LKFI NK
# Sbjct: 61 VGIYEVTSEPYVDFSRIFKPHRG-GKETYPYRVKIKPIKIGE--INFKPLINDLKFIKNK 117
#
# Query: 120 RKWSGHLMGKAMREIPEEDYRLI 142
# ++WS H GKAMRE+PEEDY+LI
# Sbjct: 118 KRWSMHFFGKAMRELPEEDYKLI 140
#
#
# >PAB2158
# Length = 111
#
# Score = 55.8 bits (133), Expect = 3e-08
# Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 32/100 (32%)
#
# Query: 9 NEDNWRVIKEKNIWGVPERHKNTIAKVKKGDKLLIYIKQENVNGEVKPSRIVAVYETASE 68
# N DNW+V+K+KNIW ++P +IV ++E SE
# Sbjct: 40 NRDNWKVVKKKNIW----------------------------ESRIEP-KIVGIFEVVSE 70
#
# Query: 69 VYRDSSRIFKSPKGMGNETFPLRIKLKPVKIFDRPIEFKP 108
# Y DSSR FKSP + NET PLRIK++P+K+ + ++FKP
# Sbjct: 71 PYTDSSRNFKSPPHL-NETSPLRIKIRPLKLGE--LDFKP 107
#
#
# >SSO2595
# Length = 174
#
# Score = 54.7 bits (130), Expect = 7e-08
# Identities = 41/147 (27%), Positives = 74/147 (49%), Gaps = 10/147 (6%)
#
# Query: 1 MAYWLCITNEDNWRVIKEKNIWGVPERHKNTIAKVKKGDKLLIYIKQENVNGEVKPSRIV 60
# + YWL ED W VI++K I+G E N +K+GD ++IY+ + + +IV
# Sbjct: 26 VTYWLVPIQEDMWDVIRDKGIYGYKE---NLEEFIKEGDYIIIYVSK--YYAKRYGGKIV 80
#
# Query: 61 AVYETASEVYRDSSRIFKSPKGMGNETFPLRIKLKPVKIFDRPIEFKPLIPKLKFITNKR 120
# + + S Y D + I+ + R+K++PV I + + K ++ K++FI +K
# Sbjct: 81 GIVKVLSNWYEDQTPIYPEETVRNKGIYIYRVKVEPVVIGE--CDMKKILDKIRFIEDKG 138
#
# Query: 121 KWSGHLM---GKAMREIPEEDYRLILE 144
# + + +L R IPE D +++ E
# Sbjct: 139 QIAKYLRNAPANLKRPIPESDAKIVEE 165
#
#
# >PAE0239
# Length = 293
#
# Score = 42.7 bits (99), Expect = 2e-04
# Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
#
# Query: 3 YWLCITNEDNWRVIKEKNIWGVPERHKNTIAKVKKGDKLLIYIKQENVNGEVKPSRIVAV 62
# YWL + E+N++ + E ++G+P ++K GD+L++YI +E + AV
# Sbjct: 4 YWLTMLPEENFKRVVELGLYGLPASVAEMAKRIKPGDRLVVYIMKEGCRELCQ--SFAAV 61
#
# Query: 63 YETASEVYRDSSRIFKSPKGMGNETFPLRIKLKPV 97
# E + R + I+ G +PL + +K V
# Sbjct: 62 LEVVGQWRRSNKPIWPDEAREGRVKYPLVVDVKAV 96
#
#
# >MTH310
# Length = 237
#
# Score = 38.1 bits (87), Expect = 0.007
# Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 11/134 (8%)
#
# Query: 9 NEDNWRVIKEKNIWGVPERHKNTIAKVKKGDKLLIYIKQENVNGEVKPSRIVAVYETASE 68
# ++D I E + G +R I +++ GD++ I+ + +NG S + Y E
# Sbjct: 2 DDDVLEDISENLVIGSVKRRGKLINEIRAGDRIFIF-RAIPLNGRRTLSFV--AYTMVDE 58
#
# Query: 69 VYRDSSRIFKSPKGMGNETFPLRIKLKPVKIFDRPIEFKPLIPKLKFITNKRKWSGHLMG 128
# VY ++ + P ++KL+ +K F+ P+ KL + KR WS L
# Sbjct: 59 VYSSPETLYDYYES------PRKLKLRGIKFFNPPLPLIKFRDKLVSVEPKR-WSSTLKS 111
#
# Query: 129 KAMREIPEEDYRLI 142
# + R I E D+R+I
# Sbjct: 112 E-YRRIDERDFRII 124
#
#
# >PAE1465
# Length = 70
#
# Score = 36.6 bits (83), Expect = 0.018
# Identities = 14/46 (30%), Positives = 28/46 (60%)
#
# Query: 3 YWLCITNEDNWRVIKEKNIWGVPERHKNTIAKVKKGDKLLIYIKQE 48
# YWL + +E+N++ E+ I+G+PE +K G +L+ Y+ ++
# Sbjct: 4 YWLTMLDEENFKYTVERGIYGLPESASGLAQLIKPGHRLVAYVMKK 49
#
#
# >msl3206
# Length = 72
#
# Score = 33.5 bits (75), Expect = 0.14
# Identities = 22/62 (35%), Positives = 30/62 (47%), Gaps = 3/62 (4%)
#
# Query: 83 MGNETFPLRIKLKPVKIFDRPIEFKPLIPKLKFITNKRKWSGHLMGKAMREIPEEDYRLI 142
# MG P R ++ + PI KPL+ +L F K W HL + EI + D+RLI
# Sbjct: 1 MGGGFTPFRRDVEWAVAEEAPI--KPLLDRLDFTAGKSNWGYHLR-FGLFEITDHDFRLI 57
#
# Query: 143 LE 144
# E
# Sbjct: 58 AE 59
#
#
# >TVN1456
# Length = 389
#
# Score = 29.3 bits (64), Expect = 3.2
# Identities = 13/32 (40%), Positives = 19/32 (58%), Gaps = 2/32 (6%)
#
# Query: 111 PKLKFITNKRKWS--GHLMGKAMREIPEEDYR 140
# P+ +F+ N K+S H++ REIP E YR
# Sbjct: 9 PEGRFVGNTEKYSVYEHILSDQRREIPSESYR 40
#
#
# >AGl2458
# Length = 222
#
# Score = 28.1 bits (61), Expect = 6.0
# Identities = 20/58 (34%), Positives = 28/58 (47%), Gaps = 5/58 (8%)
#
# Query: 22 WGVPERHK----NTIAKVKKGDKLLIYIKQENVNGEVKPSRIVAVYET-ASEVYRDSS 74
# W VP R + N + K K GDK + +V + KP + Y+ A + YRDSS
# Sbjct: 112 WCVPCREEMPALNALEKEKGGDKFEVVAVNIDVGADEKPKAFMDEYKIDALKHYRDSS 169
#
#
# >ECs2578
# Length = 272
#
# Score = 27.7 bits (60), Expect = 8.1
# Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
#
# Query: 22 WGVPERHKNTIAKVKKGDKLLIYIKQENVNGEVKPSRIVAVYETASEVYRDSSRIFKSPK 81
# +GV RH AK ++ L + Q VN + SR V SE RD+ R K PK
# Sbjct: 127 YGVEVRHPQFFAKGEEEQTLNRGLHQRGVNQVILDSRPVHAARPHSEAIRDAQR--KKPK 184
#
#
# >ZyecE
# Length = 272
#
# Score = 27.7 bits (60), Expect = 8.1
# Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
#
# Query: 22 WGVPERHKNTIAKVKKGDKLLIYIKQENVNGEVKPSRIVAVYETASEVYRDSSRIFKSPK 81
# +GV RH AK ++ L + Q VN + SR V SE RD+ R K PK
# Sbjct: 127 YGVEVRHPQFFAKGEEEQTLNRGLHQRGVNQVILDSRPVHAARPHSEAIRDAQR--KKPK 184
#
#
# >yecE
# Length = 272
#
# Score = 27.7 bits (60), Expect = 9.5
# Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
#
# Query: 22 WGVPERHKNTIAKVKKGDKLLIYIKQENVNGEVKPSRIVAVYETASEVYRDSSRIFKSPK 81
# +GV RH AK ++ L + Q VN + SR V SE RD+ R K PK
# Sbjct: 127 YGVEVRHPQFFAKGEEEQTLNRGLHQRGVNRVILDSRPVHAARPHSEAIRDAQR--KKPK 184
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.319 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,699,752
Number of Sequences: 192987
Number of extensions: 695534
Number of successful extensions: 1746
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1723
Number of HSP's gapped (non-prelim): 32
length of query: 147
length of database: 59,019,183
effective HSP length: 99
effective length of query: 48
effective length of database: 39,913,470
effective search space: 1915846560
effective search space used: 1915846560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
S2: 60 (27.7 bits)