R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 17 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|6728988|gb|AAF26986.1|AC018363_31 (AC018363) putative aspartyl protease
[Arabidopsis thaliana]
Length = 488
Frame 3 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | 488
0 150 300 450
Plus Strand HSPs:
Score = 542 (190.8 bits), Expect = 2.7e-51, P = 2.7e-51
Identities = 102/195 (52%), Positives = 136/195 (69%), Frame = +3
Query: 6 VVLKSIEVDTDILQLPSDIFDSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKL 185
V L +IEV +L+L S+ FDS + KG +IDSGTTL YLP VY+ L+ ++LA P L L
Sbjct: 286 VNLNAIEVGNSVLELSSNAFDSGDDKGVIIDSGTTLVYLPDAVYNPLLNEILASHPELTL 345
Query: 186 YLVEQQFRCFLYTGNVDRGFPVVKLHFKDSLSLTVYPHDYLFQFKDGIWCIGWQRSVAQT 365
+ V++ F CF YT +DR FP V F S+SL VYP +YLFQ ++ WC GWQ QT
Sbjct: 346 HTVQESFTCFHYTDKLDR-FPTVTFQFDKSVSLAVYPREYLFQVREDTWCFGWQNGGLQT 404
Query: 366 KNGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNCSSSIKVKDEATGIVHTVVAHNISSA 545
K G +T+LGD+ LSNKLV+YD+E VIGWT++NCS I+VKDE +G ++TV AHN+S +
Sbjct: 405 KGGASLTILGDMALSNKLVVYDIENQVIGWTNHNCSGGIQVKDEESGAIYTVGAHNLSWS 464
Query: 546 STLFIGRILTFFLLL 590
S+L I ++LT LL
Sbjct: 465 SSLAITKLLTLVSLL 479
>gi|9759039|dbj|BAB09366.1| (AB026661) aspartyl protease-like [Arabidopsis
thaliana]
Length = 478
Frame 3 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | 478
0 150 300 450
Plus Strand HSPs:
Score = 541 (190.4 bits), Expect = 3.5e-51, P = 3.5e-51
Identities = 106/195 (54%), Positives = 144/195 (73%), Frame = +3
Query: 6 VVLKSIEVDTDILQLPSDIFDSVNGKG-TVIDSGTTLAYLPAIVYDELIQKVLARQPGLK 182
V+LK ++VD D + LP + S NG G T+IDSGTTLAYLP +Y+ LI+K+ A+Q +K
Sbjct: 276 VILKGMDVDGDPIDLPPSLA-STNGDGGTIIDSGTTLAYLPQNLYNSLIEKITAKQQ-VK 333
Query: 183 LYLVEQQFRCFLYTGNVDRGFPVVKLHFKDSLSLTVYPHDYLFQFKDGIWCIGWQRSVAQ 362
L++V++ F CF +T N D+ FPVV LHF+DSL L+VYPHDYLF ++ ++C GWQ
Sbjct: 334 LHMVQETFACFSFTSNTDKAFPVVNLHFEDSLKLSVYPHDYLFSLREDMYCFGWQSGGMT 393
Query: 363 TKNGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNCSSSIKVKDEATGIVHTVVAHN-IS 539
T++G D+ LLGDLVLSNKLV+YDLE VIGW D+NCSSSIKVKD +G + + A N IS
Sbjct: 394 TQDGADVILLGDLVLSNKLVVYDLENEVIGWADHNCSSSIKVKD-GSGAAYQLGAENLIS 452
Query: 540 SASTLFIGRILTFFLLL 590
+AS++ G ++T +L
Sbjct: 453 AASSVMNGTLVTLLSIL 469
>gi|4646203|gb|AAD26876.1|AC007230_10 (AC007230) Belongs to PF|00026 Eukaryotic
aspartyl protease family. [Arabidopsis thaliana]
Length = 449
Frame 3 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | 449
0 150 300
Plus Strand HSPs:
Score = 431 (151.7 bits), Expect = 1.6e-39, P = 1.6e-39
Identities = 82/154 (53%), Positives = 109/154 (70%), Frame = +3
Query: 6 VVLKSIEVDTDILQLPSDIFDSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKL 185
V+L ++VD L LP I NG GT++DSGTTLAY P ++YD LI+ +LARQP +KL
Sbjct: 276 VMLMGMDVDGTSLDLPRSIVR--NG-GTIVDSGTTLAYFPKVLYDSLIETILARQP-VKL 331
Query: 186 YLVEQQFRCFLYTGNVDRGFPVVKLHFKDSLSLTVYPHDYLFQFKDGIWCIGWQRSVAQT 365
++VE+ F+CF ++ NVD FP V F+DS+ LTVYPHDYLF ++ ++C GWQ T
Sbjct: 332 HIVEETFQCFSFSTNVDEAFPPVSFEFEDSVKLTVYPHDYLFTLEEELYCFGWQAGGLTT 391
Query: 366 KNGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYN 467
++ LLGDLVLSNKLV+YDL+ VIGW D+N
Sbjct: 392 DERSEVILLGDLVLSNKLVVYDLDNEVIGWADHN 425
>gi|6850312|gb|AAF29389.1|AC009999_9 (AC009999) Contains similarity to nucellin
from Hordeum vulgare gb|U87148. ESTs gb|T22068, gb|F14251,
gb|F14237, gb|F14242 come from this gene. [Arabidopsis thaliana]
Length = 388
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | 388
0 150 300
Plus Strand HSPs:
Score = 278 (97.9 bits), Expect = 2.6e-23, P = 2.6e-23
Identities = 49/102 (48%), Positives = 75/102 (73%), Frame = +3
Query: 6 VVLKSIEVDTDILQLPSDIFDSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKL 185
V + +++V + L +P+D+F + KG +IDSGTTLAYLP I+Y+ L++K +P LK+
Sbjct: 285 VNMTAVQVGQEFLTIPADLFQPGDRKGAIIDSGTTLAYLPEIIYEPLVKK----EPALKV 340
Query: 186 YLVEQQFRCFLYTGNVDRGFPVVKLHFKDSLSLTVYPHDYLF 311
++V++ ++CF Y+G VD GFP V HF++S+ L VYPHDYLF
Sbjct: 341 HIVDKDYKCFQYSGRVDEGFPNVTFHFENSVFLRVYPHDYLF 382
>gi|11993877|gb|AAG42922.1|AF329505_1 (AF329505) putative protease protein
[Arabidopsis thaliana]
Length = 492
Frame 3 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | 492
0 150 300 450
Plus Strand HSPs:
Score = 280 (98.6 bits), Expect = 5.3e-23, P = 5.3e-23
Identities = 68/167 (40%), Positives = 92/167 (55%), Frame = +3
Query: 6 VVLKSIEVDTDILQLPSDIFDSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKL 185
V L+SI V+ IL + +F G GT+ID+GTTLAYLP Y IQ V
Sbjct: 288 VNLQSIAVNGQILPIDPSVFTIATGDGTIIDTGTTLAYLPDEAYSPFIQAVANAVSQYGR 347
Query: 186 YLVEQQFRCFLYT-GNVDRGFPVVKLHFKDSLSLTVYPHDYLFQFKDG---IWCIGWQRS 353
+ + ++CF T G+VD FP V L F S+ + P YL F IWCIG+QR
Sbjct: 348 PITYESYQCFEITAGDVDV-FPQVSLSFAGGASMVLGPRAYLQIFSSSGSSIWCIGFQRM 406
Query: 354 VAQTKNGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNCSSSIKVKDEATG 506
+ + +T+LGDLVL +K+V+YDL IGW +Y+CS + V G
Sbjct: 407 -----SHRRITILGDLVLKDKVVVYDLVRQRIGWAEYDCSLEVNVSASRGG 452
>gi|10177232|dbj|BAB10606.1| (AB005243) protease-like protein [Arabidopsis
thaliana]
Length = 539
Frame 3 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | 539
0 150 300 450
Plus Strand HSPs:
Score = 276 (97.2 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 62/161 (38%), Positives = 95/161 (59%), Frame = +3
Query: 6 VVLKSIEVDTDILQLPSDIFDSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKL 185
V L SI V+ L + +F + NG+GT+ID+GTTLAYL Y ++ +
Sbjct: 287 VNLLSISVNGQALPINPSVFSTSNGQGTIIDTGTTLAYLSEAAYVPFVEAITNAVSQSVR 346
Query: 186 YLVEQQFRCFLYTGNVDRGFPVVKLHFKDSLSLTVYPHDYLFQFKD----GIWCIGWQRS 353
+V + +C++ T +V FP V L+F S+ + P DYL Q + +WCIG+QR
Sbjct: 347 PVVSKGNQCYVITTSVGDIFPPVSLNFAGGASMFLNPQDYLIQQNNVGGTAVWCIGFQR- 405
Query: 354 VAQTKNGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNCSSSIKV 488
+N + +T+LGDLVL +K+ +YDL IGW +Y+CS+S+ V
Sbjct: 406 ---IQN-QGITILGDLVLKDKIFVYDLVGQRIGWANYDCSTSVNV 446
>gi|4415912|gb|AAD20143.1| (AC006282) putative protease [Arabidopsis thaliana]
Length = 469
Frame 3 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | 469
0 150 300 450
Plus Strand HSPs:
Score = 265 (93.3 bits), Expect = 2.0e-21, P = 2.0e-21
Identities = 57/159 (35%), Positives = 93/159 (58%), Frame = +3
Query: 12 LKSIEVDTDILQLPSDIFDSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKLYL 191
L SI V+ +L L + +F++ N +GT++D+GTTL YL YD + + L +
Sbjct: 307 LLSIGVNGQMLPLDAAVFEASNTRGTIVDTGTTLTYLVKEAYDLFLNAISNSVSQLVTPI 366
Query: 192 VEQQFRCFLYTGNVDRGFPVVKLHFKDSLSLTVYPHDYLFQFK--DG--IWCIGWQRSVA 359
+ +C+L + ++ FP V L+F S+ + P DYLF + DG +WCIG+Q++
Sbjct: 367 ISNGEQCYLVSTSISDMFPSVSLNFAGGASMMLRPQDYLFHYGIYDGASMWCIGFQKAP- 425
Query: 360 QTKNGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNCSSSIKV 488
++ T+LGDLVL +K+ +YDL IGW Y+C + +V
Sbjct: 426 -----EEQTILGDLVLKDKVFVYDLARQRIGWASYDCKCNHRV 463
>gi|6579210|gb|AAF18253.1|AC011438_15 (AC011438) T23G18.7 [Arabidopsis
thaliana]
Length = 566
Frame 3 hits (HSPs): ______ _________
__________________________________________________
Database sequence: | | | | | 566
0 150 300 450
Plus Strand HSPs:
Score = 175 (61.6 bits), Expect = 5.7e-21, Sum P(2) = 5.7e-21
Identities = 41/94 (43%), Positives = 57/94 (60%), Frame = +3
Query: 198 QQFRCFLYT-GNVDRGFPVVKLHFKDSLSLTVYPHDYLFQFKDG---IWCIGWQRSVAQT 365
+ ++CF T G+VD FP V L F S+ + P YL F IWCIG+QR
Sbjct: 446 ESYQCFEITAGDVDV-FPQVSLSFAGGASMVLGPRAYLQIFSSSGSSIWCIGFQRM---- 500
Query: 366 KNGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNCSSS 479
+ + +T+LGDLVL +K+V+YDL IGW +Y+C S
Sbjct: 501 -SHRRITILGDLVLKDKVVVYDLVRQRIGWAEYDCEFS 537
Score = 114 (40.1 bits), Expect = 5.7e-21, Sum P(2) = 5.7e-21
Identities = 25/51 (49%), Positives = 31/51 (60%), Frame = +3
Query: 6 VVLKSIEVDTDILQLPSDIFDSVNGKGTVIDSGTTLAYLPAIVYDELIQKV 158
V L+SI V+ IL + +F G GT+ID+GTTLAYLP Y IQ V
Sbjct: 315 VNLQSIAVNGQILPIDPSVFTIATGDGTIIDTGTTLAYLPDEAYSPFIQAV 365
>gi|11357751|pir||T45858 hypothetical protein F3A4.130 - Arabidopsis thaliana
>gi|6522926|emb|CAB62113.1| (AL132978) putative protein
[Arabidopsis thaliana]
Length = 632
Frame 3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | 632
0 150 300 450 600
Plus Strand HSPs:
Score = 184 (64.8 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 57/157 (36%), Positives = 81/157 (51%), Frame = +3
Query: 12 LKSIEVDTDILQLPSDIFDSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLK-LY 188
L I V L L S +FD +G V+DSGTT AYLP + + V+ LK +
Sbjct: 281 LTGIRVAGKQLSLHSRVFDGEHG--AVLDSGTTYAYLPDAAFAAFEEAVMREVSTLKQID 338
Query: 189 LVEQQFR--CFL-----YTGNVDRGFPVVKLHFKDSLSLTVYPHDYLFQFKD--GIWCIG 341
+ F+ CF Y + + FP V++ FK S + P +Y+F+ G +C+G
Sbjct: 339 GPDPNFKDTCFQVAASNYVSELSKIFPSVEMVFKSGQSWLLSPENYMFRHSKVHGAYCLG 398
Query: 342 WQRSVAQTKNGKD-MTLLGDLVLSNKLVIYDLEXMVIGWTDYNCS 473
NGKD TLLG +V+ N LV+YD E +G+ NCS
Sbjct: 399 ------VFPNGKDHTTLLGGIVVRNTLVVYDRENSKVGFWRTNCS 437
>gi|9757837|dbj|BAB08274.1| (AB008267) contains similarity to chloroplast
nucleoid DNA-binding protein~gene_id:MMG4.12 [Arabidopsis thaliana]
Length = 586
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | 586
0 150 300 450
Plus Strand HSPs:
Score = 168 (59.1 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 53/155 (34%), Positives = 80/155 (51%), Frame = +3
Query: 12 LKSIEVDTDILQLPSDIFDSVNGK-GTVIDSGTTLAYLPAIVYDELIQKVLARQPGLK-L 185
LK + V L+L +F NGK GTV+DSGTT AY P + + V+ P LK +
Sbjct: 264 LKQMHVAGKSLKLNPKVF---NGKHGTVLDSGTTYAYFPKEAFIAIKDAVIKEIPSLKRI 320
Query: 186 YLVEQQFR--CFLYTGN----VDRGFPVVKLHFKDSLSLTVYPHDYLFQFKD--GIWCIG 341
+ + + CF G + FP + + F + L + P +YLF+ G +C+G
Sbjct: 321 HGPDPNYDDVCFSGAGRDVAEIHNFFPEIAMEFGNGQKLILSPENYLFRHTKVRGAYCLG 380
Query: 342 WQRSVAQTKNGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNCS 473
+ ++ TLLG +V+ N LV YD E +G+ NCS
Sbjct: 381 ----IFPDRDST--TLLGGIVVRNTLVTYDRENDKLGFLKTNCS 418
>gi|11358319|pir||T47313 hypothetical protein T32A11.120 - Arabidopsis thaliana
>gi|7413629|emb|CAB85978.1| (AL138653) putative protein
[Arabidopsis thaliana]
Length = 356
Frame 3 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | 356
0 150 300
Plus Strand HSPs:
Score = 145 (51.0 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 39/103 (37%), Positives = 50/103 (48%), Frame = +3
Query: 42 LQLPSD--IFDSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKLYLVEQQFRCF 215
L+LP D +F G GT+IDSGTTL + P YD LIQ +L + + F+CF
Sbjct: 240 LRLPIDPSVFSVAKGYGTIIDSGTTLVHFPGEAYDPLIQAILNVVSQYGRPIPYESFQCF 299
Query: 216 LYTGNVDRG------FPVVKLHFKDSLSLTVYPHDYLFQ-FKD 323
T + FP V L F S+ + P YLFQ F D
Sbjct: 300 NITSGISSHLVIADMFPEVHLGFAGGASMVIKPEAYLFQKFLD 342
>gi|11994412|dbj|BAB02414.1| (AB024033) chloroplast nucleoid DNA binding
protein-like [Arabidopsis thaliana]
Length = 461
Frame 3 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | 461
0 150 300 450
Plus Strand HSPs:
Score = 141 (49.6 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 39/151 (25%), Positives = 73/151 (48%), Frame = +3
Query: 21 IEVDTDILQLPSDIFDSVNGKGTVIDSGTTLAYLPAIVYDELIQ---KVLARQPGLKLYL 191
I + D+L +PS ++D+ +G GT++DSGT+L L Y +++ + L +K
Sbjct: 313 ISLGYDMLDIPSQVWDATSGGGTILDSGTSLTLLADAAYKQVVTGLARYLVELKRVKPEG 372
Query: 192 VEQQFRCFLYTG--NVDRGFPVVKLHFKDSLSLTVYPHDYLFQFKDGIWCIGWQRSVAQT 365
V ++ CF +T NV + P + H K + YL G+ C+G+ +
Sbjct: 373 VPIEY-CFSFTSGFNVSK-LPQLTFHLKGGARFEPHRKSYLVDAAPGVKCLGFVSAGTPA 430
Query: 366 KNGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNCS 473
N ++G+++ N L +DL + + C+
Sbjct: 431 TN-----VIGNIMQQNYLWEFDLMASTLSFAPSACT 461
>gi|7489412|pir||T06213 probable aspartic proteinase (EC 3.4.23.-) - barley
>gi|2290202|gb|AAB96882.1| (U87148) nucellin [Hordeum vulgare]
>gi|2290204|gb|AAB96883.1| (U87149) nucellin [Hordeum vulgare]
Length = 410
Frame 3 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | 410
0 150 300
Plus Strand HSPs:
Score = 128 (45.1 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 39/139 (28%), Positives = 64/139 (46%), Frame = +3
Query: 90 VIDSGTTLAYLPAIVYDELIQKV--------LARQPGLKLYLVEQQFRCFLYTGNVDRGF 245
V DSG+T ++PA +Y+E++ KV L G L L + + F +V F
Sbjct: 258 VFDSGSTYTHVPAQIYNEIVSKVRGTLSESSLEEVKGRALPLCWKGKKPFGSVNDVKNQF 317
Query: 246 PVVKL---HFKDSLSLTVYPHDYLFQFKDGIWCIG-WQRSVAQTKNGKDMTLLGDLVLSN 413
+ L H + + +L + P +YLF +DG C+ S+ + L+G + + +
Sbjct: 318 KALSLKITHARGTNNLDIPPQNYLFVKEDGETCLAILDASLDPVLKELNFILIGAVTMQD 377
Query: 414 KLVIYDLEXMVIGWTDYNC 470
VIYD E +GW C
Sbjct: 378 LFVIYDNEKKQLGWVRAQC 396
>gi|7489434|pir||T04372 protein EEA1 - barley >gi|2570402|gb|AAB97155.1|
(AF017430) EEA1 [Hordeum vulgare]
Length = 410
Frame 3 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | 410
0 150 300
Plus Strand HSPs:
Score = 128 (45.1 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 39/139 (28%), Positives = 64/139 (46%), Frame = +3
Query: 90 VIDSGTTLAYLPAIVYDELIQKV--------LARQPGLKLYLVEQQFRCFLYTGNVDRGF 245
V DSG+T ++PA +Y+E++ KV L G L L + + F +V F
Sbjct: 258 VFDSGSTYTHVPAQIYNEIVSKVRGTFSESSLEEVKGRALPLCWKGKKPFGSVNDVKNQF 317
Query: 246 PVVKL---HFKDSLSLTVYPHDYLFQFKDGIWCIG-WQRSVAQTKNGKDMTLLGDLVLSN 413
+ L H + + +L + P +YLF +DG C+ S+ + L+G + + +
Sbjct: 318 KALSLKITHARGTNNLDIPPQNYLFVKEDGETCLAILDASLDPVLKELNFILIGAVTMQD 377
Query: 414 KLVIYDLEXMVIGWTDYNC 470
VIYD E +GW C
Sbjct: 378 LFVIYDNEKKQLGWVRAQC 396
>gi|4803959|gb|AAD29831.1|AC006202_9 (AC006202) putative chloroplast nucleoid
DNA-binding protein [Arabidopsis thaliana]
Length = 756
Frame 3 hits (HSPs): ___________ ___________
__________________________________________________
Database sequence: | | | | | || 756
0 150 300 450 600 750
Plus Strand HSPs:
Score = 126 (44.4 bits), Expect = 0.00029, P = 0.00029
Identities = 44/155 (28%), Positives = 77/155 (49%), Frame = +3
Query: 12 LKSIEVDTDILQLPSDIFDSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQ-PGLKLY 188
L ++ V+ +++ F + +G IDSGTTL Y P + Y L+++ + + +K+
Sbjct: 605 LDAVSVEDNLIATLGTPFHAEDGN-IFIDSGTTLTYFP-MSYCNLVREAVEQVVTAVKVP 662
Query: 189 -LVEQQFRCFLYTGNVDRGFPVVKLHFKDSLSLTVYPHD-YLFQFKDGIWCIGWQRSVAQ 362
+ C+ Y+ +D FPV+ +HF L + ++ YL GI+C+ A
Sbjct: 663 DMGSDNLLCY-YSDTIDI-FPVITMHFSGGADLVLDKYNMYLETITGGIFCL------AI 714
Query: 363 TKNGKDM-TLLGDLVLSNKLVIYDLEXMVIGWTDYNCSS 476
N M + G+ +N LV YD VI ++ NCS+
Sbjct: 715 GCNDPSMPAVFGNRAQNNFLVGYDPSSNVISFSPTNCSA 753
Score = 94 (33.1 bits), Expect = 1.4, P = 0.76
Identities = 35/151 (23%), Positives = 75/151 (49%), Frame = +3
Query: 12 LKSIEVDTDILQLPSDIFDSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKLYL 191
L ++ V+ + ++ F + +G VIDSG+T+ Y P + Y L++K + Q + +
Sbjct: 266 LDAVSVEDNRIETLGTPFHAEDGN-IVIDSGSTVTYFP-VSYCNLVRKAV-EQVVTAVRV 322
Query: 192 VE---QQFRCFLYTGNVDRGFPVVKLHFKDSLSLTVYPHD-YLFQFKDGIWCIGWQRSVA 359
+ C+ ++ +D FPV+ +HF L + ++ Y+ G++C+ +
Sbjct: 323 PDPSGNDMLCY-FSETIDI-FPVITMHFSGGADLVLDKYNMYMESNSGGLFCLA---IIC 377
Query: 360 QTKNGKDMTLLGDLVLSNKLVIYDLEXMVI-GWTDY 464
+ + + G+ +N LV YD +++ G + Y
Sbjct: 378 NSPTQE--AIFGNRAQNNFLVGYDSSSLLLQGASPY 411
>gi|11994761|dbj|BAB03090.1| (AP001313) chloroplast nucleoid DNA binding
protein-like; nucellin-like protein [Arabidopsis thaliana]
Length = 452
Frame 3 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | || 452
0 150 300 450
Plus Strand HSPs:
Score = 123 (43.3 bits), Expect = 0.00032, P = 0.00032
Identities = 51/157 (32%), Positives = 81/157 (51%), Frame = +3
Query: 6 VVLKSIEVDTDILQL-PS--DIFDSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQPG 176
V LKS+ V+ L++ PS +I DS NG GTV+DSGTTLA+L Y +I V R
Sbjct: 294 VKLKSVFVNGAKLRIDPSIWEIDDSGNG-GTVVDSGTTLAFLAEPAYRSVIAAVRRR--- 349
Query: 177 LKLYLVEQQFRCFLYTGNV------DRGFPVVKLHFKDSLSLTVYPHDYLFQFKDGIWCI 338
+KL + + F NV ++ P +K F P +Y + ++ I C+
Sbjct: 350 VKLPIADALTPGFDLCVNVSGVTKPEKILPRLKFEFSGGAVFVPPPRNYFIETEEQIQCL 409
Query: 339 GWQRSVAQTKNGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNCS 473
Q SV K G +++G+L+ L +D + +G++ C+
Sbjct: 410 AIQ-SV-DPKVG--FSVIGNLMQQGFLFEFDRDRSRLGFSRRGCA 450
>gi|4063754|gb|AAC98462.1| (AC005851) putative chloroplast nucleoid DNA-binding
protein [Arabidopsis thaliana]
Length = 389
Frame 3 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | 389
0 150 300
Plus Strand HSPs:
Score = 121 (42.6 bits), Expect = 0.00042, P = 0.00042
Identities = 38/155 (24%), Positives = 72/155 (46%), Frame = +3
Query: 12 LKSIEVDTDILQLPSDIFDSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKLYL 191
L ++ V ++ F ++ G VIDSG+TL Y P Y L++K + Q +
Sbjct: 241 LDAVSVGNTRIETVGTPFHALKGN-IVIDSGSTLTYFPES-YCNLVRKAV-EQVVTAVRF 297
Query: 192 VEQQFRCFLYTGNVDRGFPVVKLHFKDSLSLTVYPHD-YLFQFKDGIWCIGWQRSVAQTK 368
C+ Y+ +D FPV+ +HF L + ++ Y+ G++C+ + +
Sbjct: 298 PRSDILCY-YSKTIDI-FPVITMHFSGGADLVLDKYNMYVASNTGGVFCLA---IICNSP 352
Query: 369 NGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNCSS 476
+ + G+ +N LV YD +++ + NCS+
Sbjct: 353 I--EEAIFGNRAQNNFLVGYDSSSLLVSFKPTNCSA 386
>gi|4063755|gb|AAC98463.1| (AC005851) putative chloroplast nucleoid DNA-binding
protein [Arabidopsis thaliana]
Length = 392
Frame 3 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | 392
0 150 300
Plus Strand HSPs:
Score = 120 (42.2 bits), Expect = 0.00057, P = 0.00057
Identities = 38/155 (24%), Positives = 74/155 (47%), Frame = +3
Query: 12 LKSIEVDTDILQLPSDIFDSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQ-PGLKLY 188
L ++ V ++ F ++ G +IDSGTTL Y P + Y L+++ + ++
Sbjct: 241 LDAVSVGDTHVETMGTTFHALEGN-IIIDSGTTLTYFP-VSYCNLVREAVDHYVTAVRTA 298
Query: 189 -LVEQQFRCFLYTGNVDRGFPVVKLHFKDSLSLTVYPHD-YLFQFKDGIWCIGWQRSVAQ 362
C+ YT +D FPV+ +HF L + ++ Y+ G +C+ ++
Sbjct: 299 DPTGNDMLCY-YTDTIDI-FPVITMHFSGGADLVLDKYNMYIETITRGTFCL----AIIC 352
Query: 363 TKNGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNCSS 476
+D + G+ +N LV YD +++ ++ NCS+
Sbjct: 353 NNPPQD-AIFGNRAQNNFLVGYDSSSLLVSFSPTNCSA 389
>gi|11357516|pir||T47790 hypothetical protein F17J16.130 - Arabidopsis thaliana
>gi|7529751|emb|CAB86936.1| (AL163527) putative protein
[Arabidopsis thaliana]
Length = 535
Frame 3 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 535
0 150 300 450
Plus Strand HSPs:
Score = 116 (40.8 bits), Expect = 0.0027, P = 0.0027
Identities = 41/156 (26%), Positives = 80/156 (51%), Frame = +3
Query: 6 VVLKSIEVDTDILQLPSDIFD-SVNGKG-TVIDSGTTLAYLPAIVYDELIQKVLARQPGL 179
V +KSI V ++L +P + ++ S +G G T+IDSGTTL+Y Y+ + K+ + G
Sbjct: 379 VQIKSILVAGEVLNIPEETWNISSDGAGGTIIDSGTTLSYFAEPAYEFIKNKIAEKAKGK 438
Query: 180 KLYLVEQQFR----CFLYTGNVDRGFPVVKLHFKDSLSLTVYPHDYLFQF-KDGIWCIGW 344
Y V + F CF +G + P + + F D ++ +P + F + + + C+
Sbjct: 439 --YPVYRDFPILDPCFNVSGIHNVQLPELGIAFADG-AVWNFPTENSFIWLNEDLVCLAM 495
Query: 345 QRSVAQTKNGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNCS 473
+ K+ +++G+ N ++YD + +G+ C+
Sbjct: 496 ---LGTPKSA--FSIIGNYQQQNFHILYDTKRSRLGYAPTKCA 533
>gi|12082174|dbj|BAB20797.1| (AB045379) pepsinogen C [Xenopus laevis]
Length = 383
Frame 3 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | 383
0 150 300
Plus Strand HSPs:
Score = 114 (40.1 bits), Expect = 0.0028, P = 0.0028
Identities = 34/126 (26%), Positives = 58/126 (46%), Frame = +3
Query: 78 GKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKLYLVEQQFRCFLYTGNVDRGFPVVK 257
G ++D+GT+L P V+ LIQ + A+Q Y+V C N+ + P +
Sbjct: 264 GCQAIVDTGTSLLTAPQSVFSSLIQSIGAQQDQNGQYVVS----C----SNI-QNLPTIS 314
Query: 258 LHFKDSLSLTVYPHDYLFQFKDGIWCIGWQRSVAQTKNGKDMTLLGDLVLSNKLVIYDLE 437
+S + P Y+ Q G IG + ++NG+ + +LGD+ L +YDL
Sbjct: 315 FTIS-GVSFPLPPSAYVLQQSSGYCTIGIMPTYLPSQNGQPLWILGDVFLREYYSVYDLG 373
Query: 438 XMVIGW 455
+G+
Sbjct: 374 NNQVGF 379
>gi|4510415|gb|AAD21501.1| (AC006929) putative chloroplast nucleoid DNA-binding
protein [Arabidopsis thaliana]
Length = 396
Frame 3 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | 396
0 150 300
Plus Strand HSPs:
Score = 114 (40.1 bits), Expect = 0.0029, P = 0.0029
Identities = 35/155 (22%), Positives = 69/155 (44%), Frame = +3
Query: 12 LKSIEVDTDILQLPSDIFDSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKLYL 191
L ++ V ++ F ++ G VIDSGTTL Y P + Y L+++ +
Sbjct: 245 LDAVSVGNTRIETMGTTFHALEGN-IVIDSGTTLTYFP-VSYCNLVRQAVEHVVTAVRAA 302
Query: 192 VEQQFRCFLYTGNVDRGFPVVKLHFKDSLSLTVYPHD-YLFQFKDGIWCIGWQRSVAQTK 368
Y + FPV+ +HF + L + ++ Y+ G++C+ + +
Sbjct: 303 DPTGNDMLCYNSDTIDIFPVITMHFSGGVDLVLDKYNMYMESNNGGVFCLA---IICNSP 359
Query: 369 NGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNCSS 476
+ + G+ +N LV YD +++ ++ NCS+
Sbjct: 360 TQE--AIFGNRAQNNFLVGYDSSSLLVSFSPTNCSA 393
>gi|104296|pir||A39314 gastricsin (EC 3.4.23.3) precursor - bullfrog
>gi|213688|gb|AAA49530.1| (M73750) pepsinogen [Rana catesbeiana]
Length = 384
Frame 3 hits (HSPs): __________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 384
0 150 300
__________________
Annotated Domains:
DOMO DM00126: EUKARYOTICANDVIRALASPARTYLPROTE 16..382
PROSITE ASP_PROTEASE: Eukaryotic and viral aspar 268..279
PROSITE ASP_PROTEASE: Eukaryotic and viral aspar 82..93
__________________
Plus Strand HSPs:
Score = 109 (38.4 bits), Expect = 0.011, P = 0.011
Identities = 37/129 (28%), Positives = 62/129 (48%), Frame = +3
Query: 69 SVNGKGT---------VIDSGTTLAYLPAIVYDELIQKVLARQPGLKLYLVEQQFRCFLY 221
SVNG+ T ++D+GT+L P V+ L+Q + A+Q Y V C
Sbjct: 253 SVNGQATGWCSQGCQGIVDTGTSLLTAPQSVFSSLMQSIGAQQDQNGQYAVS----C--- 305
Query: 222 TGNVDRGFPVVKLHFKDSLSLTVYPHDYLFQFKDGIWCIGWQRSVAQTKNGKDMTLLGDL 401
N+ + P + +S + P Y+ Q G IG + ++NG+ + +LGD+
Sbjct: 306 -SNI-QSLPTISFTIS-GVSFPLPPSAYVLQQNSGYCTIGIMPTYLPSQNGQPLWILGDV 362
Query: 402 VLSNKLVIYDLEXMVIGW 455
L +YDL +G+
Sbjct: 363 FLRQYYSVYDLGNNQVGF 380
>gi|12321511|gb|AAG50814.1|AC079281_16 (AC079281) hypothetical protein
[Arabidopsis thaliana]
Length = 483
Frame 3 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | 483
0 150 300 450
Plus Strand HSPs:
Score = 110 (38.7 bits), Expect = 0.012, P = 0.012
Identities = 37/153 (24%), Positives = 64/153 (41%), Frame = +3
Query: 12 LKSIEVDTDILQLPSDIF--DSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKL 185
L I V ++LQ+P F D G +IDSGT + L +Y+ L + L+
Sbjct: 333 LTGISVGGELLQIPQSSFEMDESGSGGIIIDSGTAVTRLQTEIYNSLRDSFVKGTLDLEK 392
Query: 186 YLVEQQF-RCFLYTGNVDRGFPVVKLHFKDSLSLTVYPHDYLFQFKD-GIWCIGWQRSVA 359
F C+ + P V HF L + +Y+ G +C+ + A
Sbjct: 393 AAGVAMFDTCYNLSAKTTVEVPTVAFHFPGGKMLALPAKNYMIPVDSVGTFCLAF----A 448
Query: 360 QTKNGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNC 470
T + + ++G++ V +DL +IG++ C
Sbjct: 449 PTASS--LAIIGNVQQQGTRVTFDLANSLIGFSSNKC 483
>gi|10334495|emb|CAC10209.1| (AJ299060) putative extracellular dermal
glycoprotein [Cicer arietinum]
Length = 369
Frame 3 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | 369
0 150 300
Plus Strand HSPs:
Score = 108 (38.0 bits), Expect = 0.013, P = 0.013
Identities = 34/155 (21%), Positives = 71/155 (45%), Frame = +3
Query: 12 LKSIEVDTDILQLPSDIF--DSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKL 185
+K+I++D ++ L ++ D+ GT I + + L VY I+ L + KL
Sbjct: 204 VKAIKIDGKVVNLKPSLWSIDNKGNGGTKISTMSPFTELQRSVYKPFIRDFLKKASDRKL 263
Query: 186 YLVEQ--QFR-CFLYTGNVDRGFPVVKLHFKDSLSLTVYPHDYLFQFKDGIWCIGWQRSV 356
VE F CF T N++ P + L + + ++Y ++ + K + C+G+
Sbjct: 264 KKVESVAPFEACFEST-NIENSLPRIDLVLQGGVQWSIYGNNLMVNVKKNVACLGFVDGG 322
Query: 357 AQTKNG--KDMTLLGDLVLSNKLVIYDLEXMVIGWT 458
+ + K ++G L + L+++DL + ++
Sbjct: 323 TEPRMSFAKASIVIGGHQLEDNLLVFDLNSSKLSFS 358
>gi|12322538|gb|AAG51267.1|AC027135_8 (AC027135) chloroplast nucleoid DNA
binding protein, putative [Arabidopsis thaliana]
Length = 445
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | 445
0 150 300
Plus Strand HSPs:
Score = 108 (38.0 bits), Expect = 0.018, P = 0.018
Identities = 35/131 (26%), Positives = 63/131 (48%), Frame = +3
Query: 90 VIDSGTTLAYLPAIVYDELIQKVLARQPGLKLYLVEQQF--RCFLYTGNVDRGFPVVKLH 263
+IDSGTTL L + YD+ V G K Q CF +G+ + G P + +H
Sbjct: 322 IIDSGTTLTLLDSGFYDDFGTAVEESVTGAKRVSDPQGLLTHCFK-SGDKEIGLPAITMH 380
Query: 264 FKDSLSLTVYPHDYLFQFKDGIWCIGWQRSVAQTKNGKDMTLLGDLVLSNKLVIYDLEXM 443
F ++ + + P + + + C+ S+ T ++ + G++V + LV YDLE
Sbjct: 381 FTNA-DVKLSPINAFVKLNEDTVCL----SMIPTT---EVAIYGNMVQMDFLVGYDLETK 432
Query: 444 VIGWTDYNCSSSI 482
+ + +CS ++
Sbjct: 433 TVSFQRMDCSGNL 445
>gi|416749|sp|P32951|CAR1_CANPA CANDIDAPEPSIN 1 PRECURSOR (ASPARTATE PROTEASE
1) (ACP 1) >gi|578135|emb|CAA77977.1| (Z11919) pro-acid protease
[Candida parapsilosis]
Length = 402
Frame 3 hits (HSPs): ________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 402
0 150 300
__________________
Annotated Domains:
BLOCKS BL00141A: Eukaryotic and viral aspartyl 89..104
BLOCKS BL00141B: Eukaryotic and viral aspartyl 177..188
BLOCKS BL00141C: Eukaryotic and viral aspartyl 237..246
BLOCKS BL00141D: Eukaryotic and viral aspartyl 279..288
BLOCKS BL00141E: Eukaryotic and viral aspartyl 365..388
DOMO DM00126: EUKARYOTICANDVIRALASPARTYLPROTE 45..390
Entrez active site: BY SIMILARITY. 94
Entrez active site: BY SIMILARITY. 282
Entrez glycosylation site: POTENTIAL. 52
PFAM asp: Eukaryotic aspartyl protease 68..391
PRINTS PEPSIN1: Pepsin family motif I - 1 82..102
PRINTS PEPSIN2: Pepsin family motif II - 1 232..245
PRINTS PEPSIN3: Pepsin family motif III - 1 279..290
PRINTS PEPSIN4: Pepsin family motif IV - 1 364..379
PRODOM PD187239: CAR1(1) CAR2(1) CAR8(1) 1..51
PRODOM PD000286: CARP(9) PEPA(8) CATD(5) 69..115
PRODOM PD000182: CARP(10) PEPA(8) CATD(5) 130..254
PRODOM PD006087: CAR1(2) CARP(2) 256..305
PRODOM PD000310: CARP(9) PEPA(8) CATD(5) 316..389
PROSITE ASP_PROTEASE: Eukaryotic and viral aspar 279..290
PROSITE ASP_PROTEASE: Eukaryotic and viral aspar 91..102
__________________
Plus Strand HSPs:
Score = 106 (37.3 bits), Expect = 0.026, P = 0.026
Identities = 43/135 (31%), Positives = 63/135 (46%), Frame = +3
Query: 78 GKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKLYLVEQQFRCFLYTGNVDRGFPVVK 257
G G ++DSGTTL Y P+ D Q LA + G +L V + + N D V
Sbjct: 276 GDGALLDSGTTLTYFPS---DFAAQ--LADKAGARLVQVARDQYLYFIDCNTDTSGTTV- 329
Query: 258 LHFKDSLSLTVYPHDYLFQFKDGIWCIGWQRSVAQTKNGKDMTLLGDLVLSNKL-VIYDL 434
+F + +TV +Y++Q DG G Q S D T+LGD L + ++Y+L
Sbjct: 330 FNFGNGAKITVPNTEYVYQNGDGTCLWGIQPS--------DDTILGDNFLRHAYYLLYNL 381
Query: 435 EX--MVIGWTDYNCSSSI 482
+ + I Y SSI
Sbjct: 382 DANTISIAQVKYTTDSSI 399
>gi|477734|pir||B47701 aspartic proteinase ACPR (EC 3.4.23.-) precursor - yeast
(Candida parapsilosis)
Length = 402
Frame 3 hits (HSPs): ________________
Annotated Domains: __ __
__________________________________________________
Database sequence: | | | | 402
0 150 300
__________________
Annotated Domains:
PROSITE ASP_PROTEASE: Eukaryotic and viral aspar 279..290
PROSITE ASP_PROTEASE: Eukaryotic and viral aspar 91..102
__________________
Plus Strand HSPs:
Score = 106 (37.3 bits), Expect = 0.026, P = 0.026
Identities = 43/135 (31%), Positives = 63/135 (46%), Frame = +3
Query: 78 GKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKLYLVEQQFRCFLYTGNVDRGFPVVK 257
G G ++DSGTTL Y P+ D Q LA + G +L V + + N D V
Sbjct: 276 GDGALLDSGTTLTYFPS---DFAAQ--LADKAGARLVQVARDQYLYFIDCNTDTSGTTV- 329
Query: 258 LHFKDSLSLTVYPHDYLFQFKDGIWCIGWQRSVAQTKNGKDMTLLGDLVLSNKL-VIYDL 434
+F + +TV +Y++Q DG G Q S D T+LGD L + ++Y+L
Sbjct: 330 FNFGNGAKITVPNTEYVYQNGDGTCLWGIQPS--------DDTILGDNFLRHAYYLLYNL 381
Query: 435 EX--MVIGWTDYNCSSSI 482
+ + I Y SSI
Sbjct: 382 DANTISIAQVKYTTDSSI 399
>gi|4512658|gb|AAD21712.1| (AC006931) hypothetical protein [Arabidopsis
thaliana]
Length = 481
Frame 3 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | 481
0 150 300 450
Plus Strand HSPs:
Score = 102 (35.9 bits), Expect = 0.097, P = 0.093
Identities = 41/157 (26%), Positives = 81/157 (51%), Frame = +3
Query: 6 VVLKSIEVDTDILQLPSDIFD-SVNGKG-TVIDSGTTLAYL--PA--IVYDELIQKVLAR 167
+ +KSI V L +P + ++ S +G G T+IDSGTTL+Y PA I+ ++ +K+
Sbjct: 323 IQIKSILVGGKALDIPEETWNISSDGDGGTIIDSGTTLSYFAEPAYEIIKNKFAEKMKEN 382
Query: 168 QPGLKLYLVEQQFRCFLYTGNVDRGF--PVVKLHFKDSLSLTVYPHDYLFQF-KDGIWCI 338
P + + V CF +G + P + + F D ++ +P + F + + + C+
Sbjct: 383 YPIFRDFPVLDP--CFNVSGIEENNIHLPELGIAFVDG-TVWNFPAENSFIWLSEDLVCL 439
Query: 339 GWQRSVAQTKNGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNCS 473
++ T +++G+ N ++YD + +G+T C+
Sbjct: 440 ----AILGTPKST-FSIIGNYQQQNFHILYDTKRSRLGFTPTKCA 479
>gi|2160166|gb|AAB60729.1| (AC000132) F21M12.13 gene product [Arabidopsis
thaliana]
Length = 449
Frame 3 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | 449
0 150 300
Plus Strand HSPs:
Score = 101 (35.6 bits), Expect = 0.12, P = 0.11
Identities = 40/156 (25%), Positives = 70/156 (44%), Frame = +3
Query: 6 VVLKSIEVDTDILQLPSDIFDSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKL 185
V + S++V D + L FD+ +G GT+IDSGT + VY E I+ +Q +
Sbjct: 301 VSVGSVQVPVDPVYLT---FDANSGAGTIIDSGTVITRFAQPVY-EAIRDEFRKQVNVSS 356
Query: 186 YLVEQQF-RCFLYTGNVDRGFPVVKLHFKDSLSLTVYPHDYLFQFKDG-IWCIGWQRSVA 359
+ F CF + + + P + LH SL L + + L G + C+ +
Sbjct: 357 FSTLGAFDTCF--SADNENVAPKITLHMT-SLDLKLPMENTLIHSSAGTLTCLS-MAGIR 412
Query: 360 QTKNGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNCS 473
Q N + ++ +L N +++D+ IG C+
Sbjct: 413 QNANAV-LNVIANLQQQNLRILFDVPNSRIGIAPEPCN 449
>gi|7715602|gb|AAF68120.1|AC010793_15 (AC010793) F20B17.14 [Arabidopsis
thaliana] >gi|12324588|gb|AAG52249.1|AC011717_17 (AC011717)
putative aspartyl protease; 105611-106921 [Arabidopsis thaliana]
Length = 436
Frame 3 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | 436
0 150 300
Plus Strand HSPs:
Score = 100 (35.2 bits), Expect = 0.14, P = 0.13
Identities = 34/131 (25%), Positives = 59/131 (45%), Frame = +3
Query: 78 GKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKL---YLVEQQFRCFLYTGNVDRGFP 248
G+G +IDSGT + LP +Y + + L + G Y + CF T D P
Sbjct: 305 GRGILIDSGTVITRLPPSIYKAVKIEFLKQFSGFPTAPGYSILDT--CFNLTSYEDISIP 362
Query: 249 VVKLHFKDSLSLTVYPHDYLFQFKD--GIWCIGWQRSVAQTKNGKDMTLLGDLVLSNKLV 422
++K+ F+ + L V + K + C+ ++A ++ ++G+ N+ V
Sbjct: 363 IIKMIFQGNAELEVDVTGVFYFVKPDASLVCL----ALASLSYENEVGIIGNYQQKNQRV 418
Query: 423 IYDLEXMVIGWTDYNC 470
IYD +G NC
Sbjct: 419 IYDTTQERLGIVGENC 434
>gi|9711879|dbj|BAB07973.1| (AP002524) hypothetical protein~similar to
Arabidopsis thaliana chromosome 1, F13O11.13 [Oryza sativa]
Length = 451
Frame 3 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | || 451
0 150 300 450
Plus Strand HSPs:
Score = 100 (35.2 bits), Expect = 0.15, P = 0.14
Identities = 35/130 (26%), Positives = 67/130 (51%), Frame = +3
Query: 90 VIDSGTTLAYL-PAI---VYDELIQKVL---ARQPGLKLYLVEQQFRCFLYTGN-VDRG- 242
++DSGTTL +L P++ + DEL +++ + P L L C+ G V+ G
Sbjct: 321 IVDSGTTLTFLDPSLLGPIVDELSRRITLPPVQSPDGLLQL------CYNVAGREVEAGE 374
Query: 243 -FPVVKLHFKDSLSLTVYPHDYLFQFKDGIWCIGWQRSVAQTKNGKDMTLLGDLVLSNKL 419
P + L F ++ + P + ++G C+ ++ T + +++LG+L N
Sbjct: 375 SIPDLTLEFGGGAAVALKPENAFVAVQEGTLCL----AIVATTEQQPVSILGNLAQQNIH 430
Query: 420 VIYDLEXMVIGWTDYNCSSS 479
V YDL+ + + +C+ S
Sbjct: 431 VGYDLDAGTVTFAGADCAGS 450
>gi|5042418|gb|AAD38257.1|AC006193_13 (AC006193) Hypothetical Protein
[Arabidopsis thaliana]
Length = 431
Frame 3 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | 431
0 150 300
Plus Strand HSPs:
Score = 99 (34.8 bits), Expect = 0.18, P = 0.17
Identities = 41/154 (26%), Positives = 68/154 (44%), Frame = +3
Query: 12 LKSIEVDTDILQLPSDIFDSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKLYL 191
L++I V + +Q S IF + G VIDSGTTL LP+ Y EL + V+A +K
Sbjct: 286 LEAISVGSKKIQFTSTIFGTGEGN-IVIDSGTTLTLLPSNFYYEL-ESVVAST--IKAER 341
Query: 192 VEQQ--FRCFLYTGNVDRGFPVVKLHFKDSLSLTVYPHDYLFQFKDGIWCIGWQRSVAQT 365
V+ Y + P + +HFK + + + + + C + +
Sbjct: 342 VQDPDGILSLCYRDSSSFKVPDITVHFKGG-DVKLGNLNTFVAVSEDVSCFAFAAN---- 396
Query: 366 KNGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNCS 473
+ +T+ G+L N LV YD + + +CS
Sbjct: 397 ---EQLTIFGNLAQMNFLVGYDTVSGTVSFKKTDCS 429
>gi|477042|pir||A47701 aspartic proteinase ACPL (EC 3.4.23.-) precursor - yeast
(Candida parapsilosis)
Length = 395
Frame 3 hits (HSPs): __________________
Annotated Domains: __ ___
__________________________________________________
Database sequence: | | | | 395
0 150 300
__________________
Annotated Domains:
PROSITE ASP_PROTEASE: Eukaryotic and viral aspar 269..280
PROSITE ASP_PROTEASE: Eukaryotic and viral aspar 90..101
__________________
Plus Strand HSPs:
Score = 97 (34.1 bits), Expect = 0.27, P = 0.24
Identities = 42/139 (30%), Positives = 71/139 (51%), Frame = +3
Query: 66 DSVN-GKGTVIDSGTTLAYLPAIVYDELIQKVLAR-QP-GL--KLYLVEQQFRCFLYTGN 230
D+ N G G V+DSGTT++YLP + ++L KV A +P GL +LY ++ C N
Sbjct: 261 DNSNAGFGVVVDSGTTISYLPDSIVNDLANKVGAYLEPVGLGNELYFID----C---NAN 313
Query: 231 VDRGFPVVKLHFKDSLSLTVYPHDYLFQFKDGIWCIGWQRSVAQTKNGKDMTLLGDLVLS 410
+G F + +TV +++ Q C+ W + +N +LGD L
Sbjct: 314 -PQGS--ASFTFDNGAKITVPLSEFVLQSTANA-CV-WGLQSSDRQNVPP--ILGDNFLR 366
Query: 411 NKLVIYDL--EXMVIGWTDYNCSSSI 482
+ V+++L E + + Y +SS+
Sbjct: 367 HAYVVFNLDKETVSLAQVKYTSASSV 392
>gi|12323376|gb|AAG51657.1|AC010704_1 (AC010704) nucellin-like protein;
27671-25467 [Arabidopsis thaliana]
Length = 427
Frame 3 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | 427
0 150 300
Plus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.40, P = 0.33
Identities = 40/149 (26%), Positives = 60/149 (40%), Frame = +3
Query: 54 SDIFDSVNGKGTVIDSGTTLAYLPAIVYD---ELIQKVLARQP------GLKLYLVEQQF 206
+D V G V DSG++ Y A Y +LI+K L +P L + +
Sbjct: 266 NDKTTGVKGINVVFDSGSSYTYFNAEAYQAILDLIRKDLNGKPLTDTKDDKSLPVCWKGK 325
Query: 207 RCFLYTGNVDRGFPVVKLHF---KDSLSLTVYPHDYLFQFKDGIWCIGWQRSVAQTKNGK 377
+ V + F + L F K+ V P YL + G C+G G
Sbjct: 326 KPLKSLDEVKKYFKTITLRFGNQKNGQLFQVPPESYLIITEKGRVCLGILNGTEIGLEGY 385
Query: 378 DMTLLGDLVLSNKLVIYDLEXMVIGWTDYNC 470
+ ++GD+ +VIYD E IGW +C
Sbjct: 386 N--IIGDISFQGIMVIYDNEKQRIGWISSDC 414
>gi|7485278|pir||T08860 hypothetical protein A_TM017A05.8 - Arabidopsis
thaliana
Length = 472
Frame 3 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 472
0 150 300 450
Plus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.46, P = 0.37
Identities = 35/133 (26%), Positives = 61/133 (45%), Frame = +3
Query: 90 VIDSGTTLAYLPAIVYDELIQKV--LARQPGLKLYLVEQQFR-CF-----LYTG----NV 233
V DSGT+ YL Y + + LA + E F C+ LY+G N
Sbjct: 276 VFDSGTSFTYLTDAAYTLISESFNSLALDKRYQTTDSELPFEYCYALRLPLYSGHHHPNK 335
Query: 234 DR-GFPVVKLHFKDSLSLTVYPHDYLFQFKDGIWCIGWQRSVAQTKNGKDMTLLGDLVLS 410
D +P V L K S VY + K ++C+ + +D++++G ++
Sbjct: 336 DSFQYPAVNLTMKGGSSYPVYHPLVVIPMKVNVYCLAIMKI-------EDISIIGQNFMT 388
Query: 411 NKLVIYDLEXMVIGWTDYNC 470
V++D E +++GW + +C
Sbjct: 389 GYRVVFDREKLILGWKESDC 408
>gi|12328547|dbj|BAB21205.1| (AP002913) nucleoid DNA-binding protein cnd41-like
protein [Oryza sativa]
Length = 504
Frame 3 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | 504
0 150 300 450
Plus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.50, P = 0.40
Identities = 39/155 (25%), Positives = 66/155 (42%), Frame = +3
Query: 6 VVLKSIEVDTDILQLPSDIF--DSVNGKGTVIDSGTTLAYLPAIVY----DELIQ--KVL 161
V L + V IL +P F DS G ++DSGT + L + Y D ++ + L
Sbjct: 352 VGLSGLSVGGQILSIPPSAFAMDSTGAGGVIVDSGTAVTRLQSSAYAALRDAFVRGTQSL 411
Query: 162 ARQPGLKLYLVEQQFRCFLYTGNVDRGFPVVKLHFKDSLSLTVYPHDYLFQFKD-GIWCI 338
R G+ L+ C+ + P V L F L + +YL G +C+
Sbjct: 412 PRTSGVSLFDT-----CYDLSDRTSVEVPAVSLRFAGGGELRLPAKNYLIPVDGAGTYCL 466
Query: 339 GWQRSVAQTKNGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNC 470
+ A T ++++G++ V +D +G+T C
Sbjct: 467 AF----APTNAA--VSIIGNVQQQGTRVSFDTAKSTVGFTTNKC 504
>gi|7486515|pir||T08979 hypothetical protein F6G3.60 - Arabidopsis thaliana
>gi|4938479|emb|CAB43838.1| (AL078464) putative protein
[Arabidopsis thaliana] >gi|7269903|emb|CAB80996.1| (AL161576)
putative protein [Arabidopsis thaliana]
Length = 424
Frame 3 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | 424
0 150 300
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.52, P = 0.40
Identities = 40/154 (25%), Positives = 66/154 (42%), Frame = +3
Query: 12 LKSIEVDTDILQLPSDIFDSVNGKG-TVIDSGTTLAYLPAIVYDELIQKV-LARQPGLKL 185
L++I +L + F +G TVID+G + L Y+ L +++ L+
Sbjct: 266 LQAISFGEKLLDIEPGTFQRYRSQGGTVIDTGCSPTILAREAYETLSEEIDFLLGEVLRR 325
Query: 186 YLVEQQFRCFLYTGNVDR---GFPVVKLHFKDSLSLTVYPHDYLFQFKDG-IWCIGWQRS 353
Q+ Y GN+ GFPVV HF L + + G +C+
Sbjct: 326 VKDWDQYTTPCYEGNLKLDLYGFPVVTFHFAGGAELALDVESLFVSSESGDSFCL----- 380
Query: 354 VAQTKNG-KDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNC 470
A T N DM+++G + N V Y+L M + + +C
Sbjct: 381 -AMTMNTFDDMSVIGAMAQQNYNVGYNLRTMKVYFQRTDC 419
>gi|7486516|pir||T08980 hypothetical protein F6G3.70 - Arabidopsis thaliana
>gi|4938480|emb|CAB43839.1| (AL078464) putative protein
[Arabidopsis thaliana] >gi|7269904|emb|CAB80997.1| (AL161576)
putative protein [Arabidopsis thaliana]
Length = 427
Frame 3 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | 427
0 150 300
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.52, P = 0.41
Identities = 37/153 (24%), Positives = 68/153 (44%), Frame = +3
Query: 6 VVLKSIEVDTDILQLPSDIFDSVNGKG---TVIDSGTTLAYLPAIVYDEL---IQKVLAR 167
V +++I VD IL + +F+ + G T+ID+G +L L Y L I+ +
Sbjct: 275 VTIEAISVDGIILPIDPRVFNRNHQTGLGGTIIDTGNSLTSLVEEAYKPLKNRIEDIFEG 334
Query: 168 QPGLKLYLVEQQFRCFLYTGNVDR-----GFPVVKLHFKDSLSLTVYPHDYLFQFKDGIW 332
+ + + Y GN +R GFP+V HF + L++ + ++
Sbjct: 335 RFTAADVSQDDMIKMECYNGNFERDLVESGFPIVTFHFSEGAELSLDVKSLFMKLSPNVF 394
Query: 333 CIGWQRSVAQTKNGKDMTLLGDLVLSNKLVIYDLEXMVIGW 455
C+ A T ++ +G + + YDLE M + +
Sbjct: 395 CL------AVTPG--NLNSIGATAQQSYNIGYDLEAMEVSF 427
>gi|11514162|pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With
Inhibitor >gi|11514163|pdb|1FKN|B Chain B, Structure Of
Beta-Secretase Complexed With Inhibitor
Length = 391
Frame 3 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | 391
0 150 300
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.60, P = 0.45
Identities = 36/159 (22%), Positives = 75/159 (47%), Frame = +3
Query: 6 VVLKSIEVDTDILQLPSDIFDSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKL 185
V++ +E++ L++ + N +++DSGTT LP V++ ++ + A K
Sbjct: 207 VIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKF 263
Query: 186 ---YLVEQQFRCFLYTGNVDRG-FPVVKLHF-----KDSLSLTVYPHDYLFQFKDGIWCI 338
+ + +Q C+ G FPV+ L+ S +T+ P YL +D
Sbjct: 264 PDGFWLGEQLVCW-QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQ 322
Query: 339 G--WQRSVAQTKNGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNC 470
++ +++Q+ G T++G +++ V++D IG+ C
Sbjct: 323 DDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 365
>gi|6598808|gb|AAB80784.2| (AF024504) putative chloroplast nucleoid DNA-binding
protein [Arabidopsis thaliana]
Length = 473
Frame 3 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 473
0 150 300 450
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.61, P = 0.45
Identities = 36/134 (26%), Positives = 62/134 (46%), Frame = +3
Query: 90 VIDSGTTLAYLPAIVYDELIQKV--LARQPGLKLYLVEQQFR-CF-----LYTG----NV 233
V DSGT+ YL Y + + LA + E F C+ LY+G N
Sbjct: 276 VFDSGTSFTYLTDAAYTLISESFNSLALDKRYQTTDSELPFEYCYALRLPLYSGHHHPNK 335
Query: 234 DR-GFPVVKLHFKDSLSLTVYPHDYLFQFKD-GIWCIGWQRSVAQTKNGKDMTLLGDLVL 407
D +P V L K S VY + KD ++C+ + +D++++G +
Sbjct: 336 DSFQYPAVNLTMKGGSSYPVYHPLVVIPMKDTDVYCLAIMKI-------EDISIIGQNFM 388
Query: 408 SNKLVIYDLEXMVIGWTDYNC 470
+ V++D E +++GW + +C
Sbjct: 389 TGYRVVFDREKLILGWKESDC 409
>gi|6330045|dbj|BAA86463.1| (AB032975) KIAA1149 protein [Homo sapiens]
Length = 396
Frame 3 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | 396
0 150 300
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.61, P = 0.46
Identities = 36/159 (22%), Positives = 75/159 (47%), Frame = +3
Query: 6 VVLKSIEVDTDILQLPSDIFDSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKL 185
V++ +E++ L++ + N +++DSGTT LP V++ ++ + A K
Sbjct: 157 VIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKF 213
Query: 186 ---YLVEQQFRCFLYTGNVDRG-FPVVKLHF-----KDSLSLTVYPHDYLFQFKDGIWCI 338
+ + +Q C+ G FPV+ L+ S +T+ P YL +D
Sbjct: 214 PDGFWLGEQLVCW-QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQ 272
Query: 339 G--WQRSVAQTKNGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNC 470
++ +++Q+ G T++G +++ V++D IG+ C
Sbjct: 273 DDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 315
>gi|9506421 ref|NP_062077.1| beta-site APP cleaving enzyme [Rattus norvegicus]
>gi|6685233|sp|P56819|BACE_RAT BETA-SECRETASE PRECURSOR (BETA-SITE
APP CLEAVING ENZYME) (BETA-SITE AMYLOID PRECURSOR PROTEIN CLEAVING
ENZYME) (ASPARTYL PROTEASE 2) (ASP 2) (ASP2) (MEMBRANE-ASSOCIATED
ASPARTIC PROTEASE 2) (MEMAPSIN-2)
>gi|6118543|gb|AAF04144.1|AF190727_1 (AF190727) beta-site APP
cleaving enzyme [Rattus norvegicus]
Length = 501
Frame 3 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | 501
0 150 300 450
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.65, P = 0.48
Identities = 37/159 (23%), Positives = 75/159 (47%), Frame = +3
Query: 6 VVLKSIEVDTDILQLPSDIFDSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKL 185
V++ +E++ L++ + N +++DSGTT LP V++ ++ + A K
Sbjct: 262 VIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKF 318
Query: 186 ---YLVEQQFRCFLYTGNVDRG-FPVVKLHF-----KDSLSLTVYPHDYLFQFKDGIWCI 338
+ + +Q C+ G FPV+ L+ S +T+ P YL +D
Sbjct: 319 PDGFWLGEQLVCW-QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQ 377
Query: 339 G--WQRSVAQTKNGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNC 470
++ +V+Q+ G T++G +++ V++D IG+ C
Sbjct: 378 DDCYKFAVSQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 420
>gi|6857759 ref|NP_035922.2| beta-site APP cleaving enzyme; APP beta-secretase
[Mus musculus] >gi|6561820|gb|AAF17082.1| (AF200346) aspartyl
protease 2 [Mus musculus] >gi|6760477|gb|AAF04143.2|AF190726_1
(AF190726) beta-site APP cleaving enzyme [Mus musculus]
Length = 501
Frame 3 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | 501
0 150 300 450
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.65, P = 0.48
Identities = 37/159 (23%), Positives = 75/159 (47%), Frame = +3
Query: 6 VVLKSIEVDTDILQLPSDIFDSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKL 185
V++ +E++ L++ + N +++DSGTT LP V++ ++ + A K
Sbjct: 262 VIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKF 318
Query: 186 ---YLVEQQFRCFLYTGNVDRG-FPVVKLHF-----KDSLSLTVYPHDYLFQFKDGIWCI 338
+ + +Q C+ G FPV+ L+ S +T+ P YL +D
Sbjct: 319 PDGFWLGEQLVCW-QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQ 377
Query: 339 G--WQRSVAQTKNGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNC 470
++ +V+Q+ G T++G +++ V++D IG+ C
Sbjct: 378 DDCYKFAVSQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 420
>gi|6685249|sp|P56818|BACE_MOUSE BETA-SECRETASE PRECURSOR (BETA-SITE APP
CLEAVING ENZYME) (BETA-SITE AMYLOID PRECURSOR PROTEIN CLEAVING
ENZYME) (ASPARTYL PROTEASE 2) (ASP 2) (ASP2) (MEMBRANE-ASSOCIATED
ASPARTIC PROTEASE 2) (MEMAPSIN-2)
Length = 501
Frame 3 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | 501
0 150 300 450
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.65, P = 0.48
Identities = 37/159 (23%), Positives = 75/159 (47%), Frame = +3
Query: 6 VVLKSIEVDTDILQLPSDIFDSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKL 185
V++ +E++ L++ + N +++DSGTT LP V++ ++ + A K
Sbjct: 262 VIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKF 318
Query: 186 ---YLVEQQFRCFLYTGNVDRG-FPVVKLHF-----KDSLSLTVYPHDYLFQFKDGIWCI 338
+ + +Q C+ G FPV+ L+ S +T+ P YL +D
Sbjct: 319 PDGFWLGEQLVCW-QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQ 377
Query: 339 G--WQRSVAQTKNGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNC 470
++ +V+Q+ G T++G +++ V++D IG+ C
Sbjct: 378 DDCYKFAVSQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 420
>gi|12736860 ref|XP_006430.2| beta-site APP-cleaving enzyme [Homo sapiens]
Length = 423
Frame 3 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | 423
0 150 300
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.67, P = 0.49
Identities = 36/159 (22%), Positives = 75/159 (47%), Frame = +3
Query: 6 VVLKSIEVDTDILQLPSDIFDSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKL 185
V++ +E++ L++ + N +++DSGTT LP V++ ++ + A K
Sbjct: 184 VIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKF 240
Query: 186 ---YLVEQQFRCFLYTGNVDRG-FPVVKLHF-----KDSLSLTVYPHDYLFQFKDGIWCI 338
+ + +Q C+ G FPV+ L+ S +T+ P YL +D
Sbjct: 241 PDGFWLGEQLVCW-QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQ 299
Query: 339 G--WQRSVAQTKNGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNC 470
++ +++Q+ G T++G +++ V++D IG+ C
Sbjct: 300 DDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 342
>gi|2664292|emb|CAA75754.1| (Y15744) cellular aspartic protease [Aspergillus
fumigatus] >gi|4200293|emb|CAA10674.1| (AJ132504) aspartic protease
[Aspergillus fumigatus]
Length = 398
Frame 3 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | 398
0 150 300
Plus Strand HSPs:
Score = 93 (32.7 bits), Expect = 0.79, P = 0.55
Identities = 37/143 (25%), Positives = 65/143 (45%), Frame = +3
Query: 24 EVDTDILQLPSDIFDSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKLYLVEQQ 203
EVD D + L ++ + N G ++D+GT+L LP+ + D L +++ A++ Y +E
Sbjct: 264 EVDFDAIALGDNVAELEN-TGIILDTGTSLIALPSTLADLLNKEIGAKKGFTGQYSIECD 322
Query: 204 FRCFLYTGNVDRGFPVVKLHFKDSLSLTVYPHDYLFQFKDGIWCIGWQRSVAQTKNGKDM 383
R L D F + +F T+ P+DY + + CI + + +
Sbjct: 323 KRDSL----PDLTFTLAGHNF------TIGPYDYTLEVQGS--CISSFMGMDFPEPVGPL 370
Query: 384 TLLGDLVLSNKLVIYDLEXMVIG 452
+LGD L +YDL +G
Sbjct: 371 AILGDAFLRKWYSVYDLGNNAVG 393
>gi|7770346|gb|AAF69716.1|AC016041_21 (AC016041) F27J15.15 [Arabidopsis
thaliana]
Length = 583
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | 583
0 150 300 450
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.80, P = 0.55
Identities = 40/150 (26%), Positives = 64/150 (42%), Frame = +3
Query: 66 DSVNGK-GTVI-DSGTTLAYLPAIVYDELIQKVLARQPGLKLYLVEQQ------FRC--- 212
D NG+ G V+ D+G++ Y P Y +L+ L GL+L + +R
Sbjct: 419 DGENGRVGKVLFDTGSSYTYFPNQAYSQLVTS-LQEVSGLELTRDDSDETLPICWRAKTN 477
Query: 213 --FLYTGNVDRGFPVVKLHFKD-----SLSLTVYPHDYLFQFKDGIWCIGWQRSVAQTKN 371
F +V + F + L S L + P DYL G C+G + +
Sbjct: 478 FPFSSLSDVKKFFRPITLQIGSKWLIISRKLLIQPEDYLIISNKGNVCLGILDG-SSVHD 536
Query: 372 GKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNC 470
G + +LGD+ + L++YD IGW +C
Sbjct: 537 GSTI-ILGDISMRGHLIVYDNVKRRIGWMKSDC 568
>gi|6470293|gb|AAF13715.1|AF200193_1 (AF200193) memapsin 2 [Homo sapiens]
Length = 488
Frame 3 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | 488
0 150 300 450
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.82, P = 0.56
Identities = 36/159 (22%), Positives = 75/159 (47%), Frame = +3
Query: 6 VVLKSIEVDTDILQLPSDIFDSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKL 185
V++ +E++ L++ + N +++DSGTT LP V++ ++ + A K
Sbjct: 249 VIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKF 305
Query: 186 ---YLVEQQFRCFLYTGNVDRG-FPVVKLHF-----KDSLSLTVYPHDYLFQFKDGIWCI 338
+ + +Q C+ G FPV+ L+ S +T+ P YL +D
Sbjct: 306 PDGFWLGEQLVCW-QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQ 364
Query: 339 G--WQRSVAQTKNGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNC 470
++ +++Q+ G T++G +++ V++D IG+ C
Sbjct: 365 DDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 407
>gi|6912266 ref|NP_036236.1| beta-site APP-cleaving enzyme [Homo sapiens]
>gi|6685248|sp|P56817|BACE_HUMAN BETA-SECRETASE PRECURSOR
(BETA-SITE APP CLEAVING ENZYME) (BETA-SITE AMYLOID PRECURSOR
PROTEIN CLEAVING ENZYME) (ASPARTYL PROTEASE 2) (ASP 2) (ASP2)
(MEMBRANE-ASSOCIATED ASPARTIC PROTEASE 2) (MEMAPSIN-2)
>gi|7435835|pir||A59090 aspartic proteinase (EC 3.4.23.-) BACE
precursor - human >gi|6118539|gb|AAF04142.1|AF190725_1 (AF190725)
beta-site APP cleaving enzyme [Homo sapiens]
>gi|6561814|gb|AAF17079.1| (AF200343) aspartyl protease 2 [Homo
sapiens] >gi|6601445|gb|AAF18982.1|AF201468_1 (AF201468) APP
beta-secretase [Homo sapiens] >gi|6715310|gb|AAF26367.1|AF204943_1
(AF204943) transmembrane aspartic proteinase Asp 2 [Homo sapiens]
Length = 501
Frame 3 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | 501
0 150 300 450
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.85, P = 0.57
Identities = 36/159 (22%), Positives = 75/159 (47%), Frame = +3
Query: 6 VVLKSIEVDTDILQLPSDIFDSVNGKGTVIDSGTTLAYLPAIVYDELIQKVLARQPGLKL 185
V++ +E++ L++ + N +++DSGTT LP V++ ++ + A K
Sbjct: 262 VIIVRVEINGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKF 318
Query: 186 ---YLVEQQFRCFLYTGNVDRG-FPVVKLHF-----KDSLSLTVYPHDYLFQFKDGIWCI 338
+ + +Q C+ G FPV+ L+ S +T+ P YL +D
Sbjct: 319 PDGFWLGEQLVCW-QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQ 377
Query: 339 G--WQRSVAQTKNGKDMTLLGDLVLSNKLVIYDLEXMVIGWTDYNC 470
++ +++Q+ G T++G +++ V++D IG+ C
Sbjct: 378 DDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 420
>gi|9665144|gb|AAF97328.1|AC023628_9 (AC023628) Unknown protein [Arabidopsis
thaliana]
Length = 485
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | 485
0 150 300 450
Plus Strand HSPs:
Score = 92 (32.4 bits), Expect = 1.4, P = 0.75
Identities = 37/136 (27%), Positives = 65/136 (47%), Frame = +3
Query: 66 DSVNGKGTVIDSGTTLAYL--PA-IVYDELIQ---KVLARQPGLKLYLVEQQFRCFLYTG 227
D + G +IDSGT++ L PA I + + K L R P L+ CF +
Sbjct: 355 DQIGNGGVIIDSGTSVTRLIRPAYIAMRDAFRVGAKTLKRAPDFSLFDT-----CFDLSN 409
Query: 228 NVDRGFPVVKLHFKDSLSLTVYPHDYLFQFK-DGIWCIGWQRSVAQTKNGKDMTLLGDLV 404
+ P V LHF+ + +++ +YL +G +C + A T G ++++G++
Sbjct: 410 MNEVKVPTVVLHFRGA-DVSLPATNYLIPVDTNGKFCFAF----AGTMGG--LSIIGNIQ 462
Query: 405 LSNKLVIYDLEXMVIGWTDYNCS 473
V+YDL +G+ C+
Sbjct: 463 QQGFRVVYDLASSRVGFAPGGCA 485
WARNING: HSPs involving 17 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.95
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.336 0.150 0.470
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.362 0.161 0.676
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.373 0.171 0.683
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.345 0.152 0.514
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.346 0.152 0.500
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.344 0.147 0.478
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 225 221 10. 77 3 12 22 0.11 35
32 0.12 38
+2 0 225 221 10. 77 3 12 22 0.11 35
32 0.12 38
+1 0 226 224 10. 77 3 12 22 0.11 35
32 0.12 38
-1 0 226 222 10. 77 3 12 22 0.11 35
32 0.12 38
-2 0 225 222 10. 77 3 12 22 0.11 35
32 0.12 38
-3 0 225 222 10. 77 3 12 22 0.11 35
32 0.12 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 67
No. of states in DFA: 597 (59 KB)
Total size of DFA: 251 KB (256 KB)
Time to generate neighborhood: 0.02u 0.01s 0.03t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 226.94u 0.93s 227.87t Elapsed: 00:01:42
Total cpu time: 227.01u 0.97s 227.98t Elapsed: 00:01:42
Start: Wed Jan 16 21:21:47 2002 End: Wed Jan 16 21:23:29 2002
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000